sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org

+==============================================================================+
| pbseqlib 5.3.5+dfsg-4 (arm64)                Sat, 12 Mar 2022 09:42:17 +0000 |
+==============================================================================+

Package: pbseqlib
Version: 5.3.5+dfsg-4
Source Version: 5.3.5+dfsg-4
Distribution: unstable
Machine Architecture: amd64
Host Architecture: arm64
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-3051a9d7-eaf3-465b-8b67-c18ca4d45ec2' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-sqSTQZ/resolver-FdeRBr' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-03-12-0802.16-F-2022-03-12-0802.16.pdiff [9614 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-03-12-0802.16-F-2022-03-12-0802.16.pdiff [2269 B]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-03-12-0802.16-F-2022-03-12-0802.16.pdiff [9614 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-03-12-0802.16-F-2022-03-12-0802.16.pdiff [2269 B]
Get:6 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8899 kB]
Fetched 9204 kB in 3s (3319 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'pbseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pbseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/pbseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 985 kB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main pbseqlib 5.3.5+dfsg-4 (dsc) [2428 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main pbseqlib 5.3.5+dfsg-4 (tar) [973 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main pbseqlib 5.3.5+dfsg-4 (diff) [9548 B]
Fetched 985 kB in 0s (16.0 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pbseqlib-sqSTQZ/pbseqlib-5.3.5+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-sqSTQZ' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev, libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev, libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [471 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [558 B]
Fetched 1986 B in 0s (73.4 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
  bsdextrautils build-essential cmake cmake-data cpp-11-aarch64-linux-gnu
  cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs
  debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross
  dpkg-dev dwz emacsen-common file g++ g++-11 g++-11-aarch64-linux-gnu
  g++-aarch64-linux-gnu gcc-11-aarch64-linux-gnu gcc-11-aarch64-linux-gnu-base
  gcc-11-base:arm64 gcc-11-cross-base gcc-12-base:arm64 gcc-12-cross-base
  gcc-aarch64-linux-gnu gettext gettext-base googletest groff-base
  hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64
  libarchive-zip-perl libarchive13 libasan6:arm64 libasan6-arm64-cross
  libatomic1:arm64 libatomic1-arm64-cross libboost-dev:arm64
  libboost1.74-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64
  libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64
  libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64
  libcurl3-gnutls:arm64 libcurl4 libcurl4:arm64 libcurl4-gnutls-dev:arm64
  libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl
  libdeflate-dev:arm64 libdeflate0:arm64 libdpkg-perl libelf1 libexpat1
  libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-11-dev:arm64 libgcc-11-dev-arm64-cross
  libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libglib2.0-0
  libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross
  libgssapi-krb5-2:arm64 libgtest-dev:arm64 libhdf5-103-1:arm64
  libhdf5-cpp-103-1:arm64 libhdf5-dev:arm64 libhdf5-fortran-102:arm64
  libhdf5-hl-100:arm64 libhdf5-hl-cpp-100:arm64 libhdf5-hl-fortran-100:arm64
  libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64
  libhwasan0:arm64 libhwasan0-arm64-cross libicu67 libidn2-0:arm64
  libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg-dev:arm64
  libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libjsoncpp25
  libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64
  libldap-2.4-2 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64
  liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1
  libmpdec3 libncurses6 libnettle8:arm64 libnghttp2-14 libnghttp2-14:arm64
  libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64
  libpbbam-dev:arm64 libpbbam1.7.0:arm64 libpbcopper-dev:arm64
  libpbcopper1.9.3:arm64 libpbcopper2.0.0:arm64 libperl5.34 libpipeline1
  libprocps8 libpsl5 libpsl5:arm64 libpython3-stdlib libpython3.9-minimal
  libpython3.9-stdlib librhash0 librtmp1 librtmp1:arm64 libsasl2-2
  libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64 libsigsegv2
  libsqlite3-0 libssh2-1 libssh2-1:arm64 libssl-dev:arm64 libssl1.1:arm64
  libstdc++-11-dev libstdc++-11-dev:arm64 libstdc++-11-dev-arm64-cross
  libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsz2:arm64
  libtasn1-6:arm64 libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool
  libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross
  libuchardet0 libunistring2:arm64 libuv1 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 linux-libc-dev:arm64
  linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build perl
  perl-modules-5.34 pkg-config po-debconf procps python3 python3-distutils
  python3-lib2to3 python3-minimal python3-pkg-resources python3.9
  python3.9-minimal rpcsvc-proto sensible-utils ucf zlib1g:arm64
  zlib1g-dev:arm64
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc
  cmake-format gcc-11-locales cpp-doc dh-make binutils-multiarch
  debian-keyring g++-multilib g++-11-multilib gcc-11-doc manpages-dev flex
  bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev
  libgettextpo-dev groff lrzip libboost-doc:arm64 libboost1.74-doc:arm64
  libboost-atomic1.74-dev:arm64 libboost-chrono1.74-dev:arm64
  libboost-container1.74-dev:arm64 libboost-context1.74-dev:arm64
  libboost-contract1.74-dev:arm64 libboost-coroutine1.74-dev:arm64
  libboost-date-time1.74-dev:arm64 libboost-exception1.74-dev:arm64
  libboost-fiber1.74-dev:arm64 libboost-filesystem1.74-dev:arm64
  libboost-graph1.74-dev:arm64 libboost-graph-parallel1.74-dev:arm64
  libboost-iostreams1.74-dev:arm64 libboost-locale1.74-dev:arm64
  libboost-log1.74-dev:arm64 libboost-math1.74-dev:arm64
  libboost-mpi1.74-dev:arm64 libboost-mpi-python1.74-dev:arm64
  libboost-numpy1.74-dev:arm64 libboost-program-options1.74-dev:arm64
  libboost-python1.74-dev:arm64 libboost-random1.74-dev:arm64
  libboost-regex1.74-dev:arm64 libboost-serialization1.74-dev:arm64
  libboost-stacktrace1.74-dev:arm64 libboost-system1.74-dev:arm64
  libboost-test1.74-dev:arm64 libboost-thread1.74-dev:arm64
  libboost-timer1.74-dev:arm64 libboost-type-erasure1.74-dev:arm64
  libboost-wave1.74-dev:arm64 libboost1.74-tools-dev:arm64
  libmpfrc++-dev:arm64 libntl-dev:arm64 libboost-nowide1.74-dev:arm64
  glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64
  libnss-nisplus:arm64 glibc-doc manpages-dev:arm64 libcurl4-doc:arm64
  libgnutls28-dev:arm64 libidn11-dev:arm64 libkrb5-dev:arm64
  libldap2-dev:arm64 librtmp-dev:arm64 libssh2-1-dev:arm64 gnupg git bzr
  gnutls-bin:arm64 krb5-doc:arm64 krb5-user:arm64 libhdf5-doc:arm64
  liblzma-doc:arm64 libssl-doc:arm64 libstdc++-11-doc libstdc++-11-doc:arm64
  libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc
  apparmor less www-browser perl-doc libterm-readline-gnu-perl
  | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl
  python3-doc python3-tk python3-venv python3-setuptools python3.9-venv
  python3.9-doc binfmt-support
Recommended packages:
  gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:arm64
  ca-certificates libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs krb5-locales:arm64 libldap-common
  libldap-common:arm64 libgpm2 publicsuffix publicsuffix:arm64
  libsasl2-modules libsasl2-modules:arm64 libltdl-dev libwww-perl
  libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase
  libmail-sendmail-perl psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
  bsdextrautils build-essential cmake cmake-data cpp-11-aarch64-linux-gnu
  cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs
  debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross
  dpkg-dev dwz emacsen-common file g++ g++-11 g++-11-aarch64-linux-gnu
  g++-aarch64-linux-gnu gcc-11-aarch64-linux-gnu gcc-11-aarch64-linux-gnu-base
  gcc-11-base:arm64 gcc-11-cross-base gcc-12-base:arm64 gcc-12-cross-base
  gcc-aarch64-linux-gnu gettext gettext-base googletest groff-base
  hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64
  libarchive-zip-perl libarchive13 libasan6:arm64 libasan6-arm64-cross
  libatomic1:arm64 libatomic1-arm64-cross libboost-dev:arm64
  libboost1.74-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64
  libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64
  libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64
  libcurl3-gnutls:arm64 libcurl4 libcurl4:arm64 libcurl4-gnutls-dev:arm64
  libdb5.3:arm64 libdebhelper-perl libdebian-dpkgcross-perl
  libdeflate-dev:arm64 libdeflate0:arm64 libdpkg-perl libelf1 libexpat1
  libffi8:arm64 libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-11-dev:arm64 libgcc-11-dev-arm64-cross
  libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libglib2.0-0
  libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgomp1-arm64-cross
  libgssapi-krb5-2:arm64 libgtest-dev:arm64 libhdf5-103-1:arm64
  libhdf5-cpp-103-1:arm64 libhdf5-dev:arm64 libhdf5-fortran-102:arm64
  libhdf5-hl-100:arm64 libhdf5-hl-cpp-100:arm64 libhdf5-hl-fortran-100:arm64
  libhogweed6:arm64 libhts-dev:arm64 libhts3:arm64 libhtscodecs2:arm64
  libhwasan0:arm64 libhwasan0-arm64-cross libicu67 libidn2-0:arm64
  libio-string-perl libitm1:arm64 libitm1-arm64-cross libjpeg-dev:arm64
  libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64 libjsoncpp25
  libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64
  libldap-2.4-2 libldap-2.4-2:arm64 liblocale-gettext-perl liblsan0:arm64
  liblsan0-arm64-cross liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1
  libmpdec3 libncurses6 libnettle8:arm64 libnghttp2-14 libnghttp2-14:arm64
  libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libp11-kit0:arm64
  libpbbam-dev:arm64 libpbbam1.7.0:arm64 libpbcopper-dev:arm64
  libpbcopper1.9.3:arm64 libpbcopper2.0.0:arm64 libperl5.34 libpipeline1
  libprocps8 libpsl5 libpsl5:arm64 libpython3-stdlib libpython3.9-minimal
  libpython3.9-stdlib librhash0 librtmp1 librtmp1:arm64 libsasl2-2
  libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64 libsigsegv2
  libsqlite3-0 libssh2-1 libssh2-1:arm64 libssl-dev:arm64 libssl1.1:arm64
  libstdc++-11-dev libstdc++-11-dev:arm64 libstdc++-11-dev-arm64-cross
  libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libsz2:arm64
  libtasn1-6:arm64 libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool
  libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross
  libuchardet0 libunistring2:arm64 libuv1 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl libzstd1:arm64 linux-libc-dev:arm64
  linux-libc-dev-arm64-cross m4 man-db media-types meson ninja-build perl
  perl-modules-5.34 pkg-config po-debconf procps python3 python3-distutils
  python3-lib2to3 python3-minimal python3-pkg-resources python3.9
  python3.9-minimal rpcsvc-proto sbuild-build-depends-main-dummy:arm64
  sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64
0 upgraded, 214 newly installed, 0 to remove and 0 not upgraded.
Need to get 171 MB of archives.
After this operation, 777 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [988 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.34 all 5.34.0-3 [2850 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.34 amd64 5.34.0-3 [4208 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.34.0-3 [297 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.10-2 [803 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.4.7-1 [109 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.10-2 [1937 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.8-1 [38.5 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 6.0.0 [32.8 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.38.0-1 [827 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.10-2 [1683 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.10-2 [487 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.8-1 [21.6 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.8-1 [38.1 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-12-base arm64 12-20220302-1 [206 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.3-2 [102 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.17-7+b1 [64.2 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.17-7+b1 [502 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.41-2 [295 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.41-2 [129 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.41-2 [66.9 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-8 [936 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.3-1+b1 [144 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.5-1 [37.6 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.10.1-1 [1407 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.5-1.1 [823 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.38-2 [3265 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.27-1.1 [118 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.33-7 [2289 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-18 [1959 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-18 [10.2 MB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.21.1 [1568 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.21.1 [2171 kB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.13+dfsg-1 [709 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.5.2-1 [345 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-2 [74.2 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg-2 [111 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1+b1 [233 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.10.0-3 [178 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.82.0-1 [357 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-3 [78.5 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.4.2-1 [129 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.43.0-1 [136 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dh-elpa-helper all 2.0.10 [11.3 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 emacsen-common all 3.0.4 [19.3 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.22.1-1 [1905 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.22.1-1+b1 [7990 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-aarch64-linux-gnu-base amd64 11.2.0-18cross1 [208 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-aarch64-linux-gnu amd64 11.2.0-18cross1 [8493 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:11.2.0-2 [17.0 kB]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-18cross1 [203 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-12-cross-base all 12-20220222-1cross1 [202 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.33-1cross1 [1243 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 12-20220222-1cross1 [35.1 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 12-20220222-1cross1 [102 kB]
Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 12-20220222-1cross1 [23.4 kB]
Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 12-20220222-1cross1 [9244 B]
Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-arm64-cross all 11.2.0-18cross1 [1941 kB]
Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 12-20220222-1cross1 [925 kB]
Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 11.2.0-18cross1 [1949 kB]
Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 12-20220222-1cross1 [517 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 12-20220222-1cross1 [860 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libhwasan0-arm64-cross all 12-20220222-1cross1 [997 kB]
Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-arm64-cross all 11.2.0-18cross1 [933 kB]
Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-aarch64-linux-gnu amd64 11.2.0-18cross1 [16.8 MB]
Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:11.2.0-2 [1456 B]
Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.15.5-1cross1 [1554 kB]
Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.33-1cross1 [1938 kB]
Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-arm64-cross all 11.2.0-18cross1 [1917 kB]
Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-aarch64-linux-gnu amd64 11.2.0-18cross1 [9380 kB]
Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:11.2.0-2 [1176 B]
Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB]
Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB]
Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB]
Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB]
Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB]
Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB]
Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB]
Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB]
Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB]
Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B]
Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.104 [18.6 kB]
Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.6 [193 kB]
Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB]
Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.186-1 [179 kB]
Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB]
Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB]
Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.6 [1054 kB]
Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-11-base arm64 11.2.0-18 [208 kB]
Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 googletest all 1.11.0-3 [535 kB]
Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 hdf5-helpers arm64 1.10.7+repack-4 [42.9 kB]
Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 12-20220302-1 [35.1 kB]
Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.33-7 [2478 kB]
Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libaec0 arm64 1.0.6-1 [19.7 kB]
Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 libsz2 arm64 1.0.6-1 [7384 B]
Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libaec-dev arm64 1.0.6-1 [18.5 kB]
Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 libasan6 arm64 11.2.0-18 [1951 kB]
Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 12-20220302-1 [9504 B]
Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 12-20220302-1 [104 kB]
Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 12-20220302-1 [23.9 kB]
Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 12-20220302-1 [926 kB]
Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 11.2.0-18 [1956 kB]
Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 12-20220302-1 [559 kB]
Get:137 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 12-20220302-1 [861 kB]
Get:138 http://debian.oregonstate.edu/debian unstable/main arm64 libhwasan0 arm64 12-20220302-1 [998 kB]
Get:139 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-11-dev arm64 11.2.0-18 [931 kB]
Get:140 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.16.12-1 [1487 kB]
Get:141 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.27-1.1 [90.7 kB]
Get:142 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.27-1.1 [121 kB]
Get:143 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.46.5-2 [75.5 kB]
Get:144 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.19.2-2 [64.9 kB]
Get:145 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.19.2-2 [114 kB]
Get:146 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6.1-3 [15.4 kB]
Get:147 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1m-1 [1386 kB]
Get:148 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.19.2-2 [346 kB]
Get:149 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.19.2-2 [156 kB]
Get:150 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc3 arm64 1.3.2-2 [80.4 kB]
Get:151 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB]
Get:152 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc-dev arm64 1.3.2-2 [193 kB]
Get:153 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB]
Get:154 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.33-7 [1941 kB]
Get:155 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-11-dev arm64 11.2.0-18 [1918 kB]
Get:156 http://debian.oregonstate.edu/debian unstable/main arm64 libboost1.74-dev arm64 1.74.0-14 [9533 kB]
Get:157 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-dev arm64 1.74.0.3 [4548 B]
Get:158 http://debian.oregonstate.edu/debian unstable/main arm64 libbrotli1 arm64 1.0.9-2+b3 [270 kB]
Get:159 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-5 [46.1 kB]
Get:160 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.2.1+dfsg-3 [538 kB]
Get:161 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle8 arm64 3.7.3-1 [277 kB]
Get:162 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed6 arm64 3.7.3-1 [316 kB]
Get:163 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 1.0-1 [406 kB]
Get:164 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.3.2-2 [94.6 kB]
Get:165 http://debian.oregonstate.edu/debian unstable/main arm64 libffi8 arm64 3.4.2-4 [23.0 kB]
Get:166 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.24.0-6 [330 kB]
Get:167 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.18.0-4 [54.0 kB]
Get:168 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.7.3-4+b1 [1297 kB]
Get:169 http://debian.oregonstate.edu/debian unstable/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.8 [622 kB]
Get:170 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-2 [74.5 kB]
Get:171 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg-2 [110 kB]
Get:172 http://debian.oregonstate.edu/debian unstable/main arm64 libldap-2.4-2 arm64 2.4.59+dfsg-1+b1 [223 kB]
Get:173 http://debian.oregonstate.edu/debian unstable/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB]
Get:174 http://debian.oregonstate.edu/debian unstable/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB]
Get:175 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-2 [87.9 kB]
Get:176 http://debian.oregonstate.edu/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB]
Get:177 http://debian.oregonstate.edu/debian unstable/main arm64 libssh2-1 arm64 1.10.0-3 [171 kB]
Get:178 http://debian.oregonstate.edu/debian unstable/main arm64 libzstd1 arm64 1.4.8+dfsg-3 [290 kB]
Get:179 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl3-gnutls arm64 7.82.0-1 [331 kB]
Get:180 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl4 arm64 7.82.0-1 [335 kB]
Get:181 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl4-gnutls-dev arm64 7.82.0-1 [436 kB]
Get:182 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate0 arm64 1.10-2 [61.0 kB]
Get:183 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate-dev arm64 1.10-2 [51.9 kB]
Get:184 http://debian.oregonstate.edu/debian unstable/main arm64 libgfortran5 arm64 12-20220302-1 [340 kB]
Get:185 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.70.4-1 [1405 kB]
Get:186 http://debian.oregonstate.edu/debian unstable/main arm64 libgtest-dev arm64 1.11.0-3 [227 kB]
Get:187 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-103-1 arm64 1.10.7+repack-4 [1067 kB]
Get:188 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-cpp-103-1 arm64 1.10.7+repack-4 [133 kB]
Get:189 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-fortran-102 arm64 1.10.7+repack-4 [107 kB]
Get:190 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-hl-100 arm64 1.10.7+repack-4 [81.1 kB]
Get:191 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-hl-fortran-100 arm64 1.10.7+repack-4 [57.8 kB]
Get:192 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-hl-cpp-100 arm64 1.10.7+repack-4 [40.1 kB]
Get:193 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB]
Get:194 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.2-1 [152 kB]
Get:195 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.2-1 [272 kB]
Get:196 http://debian.oregonstate.edu/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.2-1 [74.7 kB]
Get:197 http://debian.oregonstate.edu/debian unstable/main arm64 libssl-dev arm64 1.1.1m-1 [1691 kB]
Get:198 http://debian.oregonstate.edu/debian unstable/main arm64 libhdf5-dev arm64 1.10.7+repack-4 [2588 kB]
Get:199 http://debian.oregonstate.edu/debian unstable/main arm64 libhtscodecs2 arm64 1.2.1-1 [52.6 kB]
Get:200 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.5-2 [165 kB]
Get:201 http://debian.oregonstate.edu/debian unstable/main arm64 libhts3 arm64 1.13+ds-2 [361 kB]
Get:202 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB]
Get:203 http://debian.oregonstate.edu/debian unstable/main arm64 libhts-dev arm64 1.13+ds-2 [4087 kB]
Get:204 http://debian.oregonstate.edu/debian unstable/main arm64 libpbcopper1.9.3 arm64 1.9.3+dfsg-2 [499 kB]
Get:205 http://debian.oregonstate.edu/debian unstable/main arm64 libpbbam1.7.0 arm64 1.7.0+dfsg-2 [593 kB]
Get:206 http://debian.oregonstate.edu/debian unstable/main arm64 libpbbam-dev arm64 1.7.0+dfsg-2 [87.2 kB]
Get:207 http://debian.oregonstate.edu/debian unstable/main arm64 libpbcopper2.0.0 arm64 2.0.0+dfsg-2 [510 kB]
Get:208 http://debian.oregonstate.edu/debian unstable/main arm64 libpbcopper-dev arm64 2.0.0+dfsg-2 [846 kB]
Get:209 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.1-1 [112 kB]
Get:210 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:211 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.9.10-1 [79.4 kB]
Get:212 http://debian.oregonstate.edu/debian unstable/main amd64 python3-distutils all 3.9.10-1 [146 kB]
Get:213 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.61.2-1 [517 kB]
Get:214 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 171 MB in 1s (121 MB/s)
Selecting previously unselected package perl-modules-5.34.
(Reading database ... 10596 files and directories currently installed.)
Preparing to unpack .../0-perl-modules-5.34_5.34.0-3_all.deb ...
Unpacking perl-modules-5.34 (5.34.0-3) ...
Selecting previously unselected package libperl5.34:amd64.
Preparing to unpack .../1-libperl5.34_5.34.0-3_amd64.deb ...
Unpacking libperl5.34:amd64 (5.34.0-3) ...
Selecting previously unselected package perl.
Preparing to unpack .../2-perl_5.34.0-3_amd64.deb ...
Unpacking perl (5.34.0-3) ...
Selecting previously unselected package liblocale-gettext-perl.
Preparing to unpack .../3-liblocale-gettext-perl_1.07-4+b2_amd64.deb ...
Unpacking liblocale-gettext-perl (1.07-4+b2) ...
Selecting previously unselected package libpython3.9-minimal:amd64.
Preparing to unpack .../4-libpython3.9-minimal_3.9.10-2_amd64.deb ...
Unpacking libpython3.9-minimal:amd64 (3.9.10-2) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../5-libexpat1_2.4.7-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.4.7-1) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../6-python3.9-minimal_3.9.10-2_amd64.deb ...
Unpacking python3.9-minimal (3.9.10-2) ...
Setting up libpython3.9-minimal:amd64 (3.9.10-2) ...
Setting up libexpat1:amd64 (2.4.7-1) ...
Setting up python3.9-minimal (3.9.10-2) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 12869 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.9.8-1_amd64.deb ...
Unpacking python3-minimal (3.9.8-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_6.0.0_all.deb ...
Unpacking media-types (6.0.0) ...
Selecting previously unselected package libmpdec3:amd64.
Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ...
Unpacking libmpdec3:amd64 (2.5.1-2) ...
Selecting previously unselected package libsqlite3-0:amd64.
Preparing to unpack .../3-libsqlite3-0_3.38.0-1_amd64.deb ...
Unpacking libsqlite3-0:amd64 (3.38.0-1) ...
Selecting previously unselected package libpython3.9-stdlib:amd64.
Preparing to unpack .../4-libpython3.9-stdlib_3.9.10-2_amd64.deb ...
Unpacking libpython3.9-stdlib:amd64 (3.9.10-2) ...
Selecting previously unselected package python3.9.
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update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up g++-11-aarch64-linux-gnu (11.2.0-18cross1) ...
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update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
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Setting up libhts-dev:arm64 (1.13+ds-2) ...
Setting up libhdf5-dev:arm64 (1.10.7+repack-4) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libboost-dev:arm64 (1.74.0.3) ...
Setting up libpbbam-dev:arm64 (1.7.0+dfsg-2) ...
Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64)
Toolchain package versions: binutils_2.38-2 dpkg-dev_1.21.1 g++-11_11.2.0-18 gcc-11_11.2.0-18 libc6-dev_2.33-7 libstdc++-11-dev_11.2.0-18 libstdc++-11-dev-arm64-cross_11.2.0-18cross1 libstdc++6_12-20220302-1 libstdc++6-arm64-cross_12-20220222-1cross1 linux-libc-dev_5.16.12-1
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libprocps8_2:3.3.17-7+b1 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.8-1 libpython3.9-minimal_3.9.10-2 libpython3.9-stdlib_3.9.10-2 libquadmath0_12-20220302-1 libreadline8_8.1.2-1 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-2 libsasl2-modules-db_2.1.28+dfsg-2 libseccomp2_2.5.3-2 libselinux1_3.3-1+b2 libsemanage-common_3.3-1 libsemanage1_3.1-2 libsemanage2_3.3-1+b2 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.37.3-1+b1 libsqlite3-0_3.38.0-1 libss2_1.46.5-2 libssh2-1_1.10.0-3 libssl-dev_1.1.1m-1 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-18 libstdc++-11-dev-arm64-cross_11.2.0-18cross1 libstdc++6_12-20220302-1 libstdc++6-arm64-cross_12-20220222-1cross1 libsub-override-perl_0.09-2 libsystemd0_250.3-2 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-18 libtsan0-arm64-cross_11.2.0-18cross1 libubsan1_12-20220302-1 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: pbseqlib
Binary: libblasr-dev, libblasr5.3.5, libpbseq, libpbseq-dev, libpbdata-dev, libpbihdf-dev
Architecture: any
Version: 5.3.5+dfsg-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/PacificBiosciences/blasr_libcpp
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib
Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git
Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev, libpbcopper-dev, libhts-dev
Package-List:
 libblasr-dev deb libdevel optional arch=any
 libblasr5.3.5 deb libs optional arch=any
 libpbdata-dev deb libdevel optional arch=any
 libpbihdf-dev deb libdevel optional arch=any
 libpbseq deb science optional arch=any
 libpbseq-dev deb libdevel optional arch=any
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Files:
 53cbc19d8c807640dafbd04fcc47f86e 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz
 d6a4409c79e77d8c240fcc2949af9505 9548 pbseqlib_5.3.5+dfsg-4.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Zv8eixex/trustedkeys.kbx': General error
gpgv: Signature made Tue Mar  8 10:52:24 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./pbseqlib_5.3.5+dfsg-4.dsc
dpkg-source: info: extracting pbseqlib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-1.10.1-support.patch
dpkg-source: info: applying hdf5-1.10.0-support.patch
dpkg-source: info: applying meson.patch
dpkg-source: info: applying static+shared_lib.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-3051a9d7-eaf3-465b-8b67-c18ca4d45ec2
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package pbseqlib
dpkg-buildpackage: info: source version 5.3.5+dfsg-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
find -name defines.mk -delete
rm -f pbdata/libconfig.h
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --cross-file /<<BUILDDIR>>/pbseqlib-5.3.5\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf
DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
The Meson build system
Version: 0.61.2
Source dir: /<<PKGBUILDDIR>>
Build dir: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu
Build type: cross build
Project name: libblasr
Project version: 5.3.5
C++ compiler for the host machine: /usr/bin/aarch64-linux-gnu-g++ (gcc 11.2.0 "aarch64-linux-gnu-g++ (Debian 11.2.0-18) 11.2.0")
C++ linker for the host machine: /usr/bin/aarch64-linux-gnu-g++ ld.bfd 2.38
C++ compiler for the build machine: c++ (gcc 11.2.0 "c++ (Debian 11.2.0-18) 11.2.0")
C++ linker for the build machine: c++ ld.bfd 2.38
Build machine cpu family: x86_64
Build machine cpu: x86_64
Host machine cpu family: aarch64
Host machine cpu: arm64
Target machine cpu family: aarch64
Target machine cpu: arm64
Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES 
Compiler for C++ supports arguments -Wno-unused-variable: YES 
Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES 
Found pkg-config: /usr/bin/aarch64-linux-gnu-pkg-config (0.29.2)
Run-time dependency Boost found: YES 1.74.0 (/usr/include)
Run-time dependency pbbam found: YES 1.7.0
Run-time dependency zlib found: YES 1.2.11
Run-time dependency htslib found: YES 1.13+ds
Library rt found: YES
Run-time dependency HDF5 for cpp found: YES 1.10.7
Configuring LibBlasrConfig.h using configuration
Program tools/check-formatting found: YES (/<<PKGBUILDDIR>>/tools/check-formatting)
Run-time dependency GTest found: YES 1.11.0
Build targets in project: 3
NOTICE: Future-deprecated features used:
 * 0.56.0: {'meson.build_root', 'meson.source_root'}

libblasr 5.3.5

  User defined options
    Cross files  : /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/meson-cross-file.conf
    buildtype    : plain
    libdir       : lib/aarch64-linux-gnu
    localstatedir: /var
    prefix       : /usr
    sysconfdir   : /etc
    wrap_mode    : nodownload

Found ninja-1.10.1 at /usr/bin/ninja
   dh_auto_build -a
	cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v
[1/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -c ../hdf/BufferedHDF2DArray.cpp
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:82:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   82 | DEFINE_TYPED_CREATE_ROW(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:83:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   83 | DEFINE_TYPED_CREATE_ROW(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:84:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   84 | DEFINE_TYPED_CREATE_ROW(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned char]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:85:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   85 | DEFINE_TYPED_CREATE_ROW(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short unsigned int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:86:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   86 | DEFINE_TYPED_CREATE_ROW(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:87:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   87 | DEFINE_TYPED_CREATE_ROW(int16_t, H5::PredType::NATIVE_INT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = float]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:88:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   88 | DEFINE_TYPED_CREATE_ROW(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[2/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -c ../hdf/BufferedHDFArray.cpp
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:67:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   67 | DEFINE_TYPED_CREATE_ARRAY(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:68:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   68 | DEFINE_TYPED_CREATE_ARRAY(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char*]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:69:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   69 | DEFINE_TYPED_CREATE_ARRAY(char *, H5::StrType(0, H5T_VARIABLE))
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned char]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:70:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   70 | DEFINE_TYPED_CREATE_ARRAY(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:71:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   71 | DEFINE_TYPED_CREATE_ARRAY(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = float]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:72:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   72 | DEFINE_TYPED_CREATE_ARRAY(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short unsigned int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:73:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   73 | DEFINE_TYPED_CREATE_ARRAY(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = std::__cxx11::basic_string<char>]’:
../hdf/BufferedHDFArray.cpp:79:86: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |     dataset = container->createDataSet(datasetName.c_str(), varStrType, space, cparms);
      |                                                                                      ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[3/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -MF libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o.d -o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -c ../hdf/DatasetCollection.cpp
[4/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -c ../hdf/HDFAlnGroupGroup.cpp
[5/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -c ../hdf/HDFAlnInfoGroup.cpp
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAlnInfoGroup.cpp:44:23:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[6/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -c ../hdf/HDFAtom.cpp
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::Create(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:9:92: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
    9 |     attribute = object.createAttribute(atomName.c_str(), strType, H5::DataSpace(H5S_SCALAR));
      |                                                                                            ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:20:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   20 | DEFINE_TYPED_CREATE_ATOM(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:21:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   21 | DEFINE_TYPED_CREATE_ATOM(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:22:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   22 | DEFINE_TYPED_CREATE_ATOM(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:23:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   23 | DEFINE_TYPED_CREATE_ATOM(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:24:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   24 | DEFINE_TYPED_CREATE_ATOM(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:25:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   25 | DEFINE_TYPED_CREATE_ATOM(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:26:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   26 | DEFINE_TYPED_CREATE_ATOM(uint64_t, H5::PredType::STD_I64LE)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[7/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -c ../hdf/HDFAttributable.cpp
[8/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -c ../hdf/HDFBaseCallsWriter.cpp
In file included from ../hdf/HDFBaseCallsWriter.hpp:11,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFBaseCallsWriter.hpp:11,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[9/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -c ../hdf/HDFBaxWriter.cpp
[10/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -c ../hdf/HDFCmpExperimentGroup.cpp
[11/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -c ../hdf/HDFCmpSupportedFields.cpp
[12/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFData.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -c ../hdf/HDFData.cpp
../hdf/HDFData.cpp: In member function ‘int HDFData::BaseInitializeDataset(H5::Group&, const string&)’:
../hdf/HDFData.cpp:37:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   37 |     dataset = hdfFile.openDataSet(_datasetName.c_str());
      |                                                       ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/HDFData.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/HDFData.cpp: In member function ‘int HDFData::InitializeDataset(H5::Group&, const string&)’:
../hdf/HDFData.cpp:52:59: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   52 |         dataset = hdfFile.openDataSet(_datasetName.c_str());
      |                                                           ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/HDFData.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[13/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -c ../hdf/HDFFile.cpp
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:34:75: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy]
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:48,
                 from ../hdf/HDFFile.hpp:8,
                 from ../hdf/HDFFile.cpp:1:
/usr/include/hdf5/serial/H5File.h:101:9: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’
  101 |         H5File(const H5File& original);
      |         ^~~~~~
/usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’:
/usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   25 | class H5_DLLCPP H5File : public Group {
      |                 ^~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:47,
                 from ../hdf/HDFFile.hpp:8,
                 from ../hdf/HDFFile.cpp:1:
/usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   57 |         Group(const Group& original);
      |         ^~~~~
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:34:75: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
[14/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -c ../hdf/HDFGroup.cpp
../hdf/HDFGroup.cpp: In member function ‘int HDFGroup::Initialize(H5::Group&, std::string)’:
../hdf/HDFGroup.cpp:18:47: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   18 |         group = fg.openGroup(groupName.c_str());
      |                                               ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:47,
                 from ../hdf/HDFGroup.hpp:9,
                 from ../hdf/HDFGroup.cpp:1:
/usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   57 |         Group(const Group& original);
      |         ^~~~~
[15/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -c ../hdf/HDFNewBasReader.cpp
[16/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -c ../hdf/HDFPulseCallsWriter.cpp
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[17/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -c ../hdf/HDFPulseDataFile.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[18/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -c ../hdf/HDFPulseH5Writer.cpp
[19/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -c ../hdf/HDFPulseWriter.cpp
[20/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -c ../hdf/HDFRegionsWriter.cpp
../hdf/HDFRegionsWriter.cpp: In member function ‘bool HDFRegionsWriter::Write(const std::vector<RegionAnnotation>&)’:
../hdf/HDFRegionsWriter.cpp:44:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   44 |     for (auto annotation : annotations)
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFWriterBase.hpp:17,
                 from ../hdf/HDFRegionsWriter.hpp:13,
                 from ../hdf/HDFRegionsWriter.cpp:3:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
[21/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -c ../hdf/HDFRegionTableReader.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../hdf/HDFRegionTableReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:45:26:   required from ‘int HDFAtom<T>::Initialize(HDFData&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFRegionTableReader.cpp:31:31:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../hdf/HDFRegionTableReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[22/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -c ../hdf/HDFScanDataReader.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:26:33:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:29:33:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:33:39:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[23/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -c ../hdf/HDFScanDataWriter.cpp
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[24/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -c ../hdf/HDFUtils.cpp
In file included from /usr/aarch64-linux-gnu/include/c++/11/cassert:44,
                 from ../pbdata/reads/RegionTypeMap.hpp:7,
                 from ../pbdata/reads/RegionAnnotation.hpp:17,
                 from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFBasReader.hpp:21,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFBasReader.hpp: In instantiation of ‘void T_HDFBasReader<T_Sequence>::GetMinMaxHoleNumber(UInt&, UInt&) [with T_Sequence = FASTASequence; UInt = unsigned int]’:
../hdf/HDFUtils.cpp:41:38:   required from here
../hdf/HDFBasReader.hpp:1233:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
 1233 |         assert(nReads >= 0);
      |                ~~~~~~~^~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = FASTASequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFUtils.cpp:39:29:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[25/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -c ../hdf/HDFWriterBase.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFWriterBase.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFWriterBase.cpp:49:29:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFWriterBase.hpp:11,
                 from ../hdf/HDFWriterBase.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFWriterBase.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFWriterBase.hpp:11,
                 from ../hdf/HDFWriterBase.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[26/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -c ../hdf/HDFZMWMetricsWriter.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWMetricsWriter.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.hpp:6,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[27/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -c ../hdf/HDFZMWReader.cpp
[28/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -c ../hdf/HDFZMWWriter.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWWriter.hpp:12,
                 from ../hdf/HDFZMWWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWWriter.hpp:10,
                 from ../hdf/HDFZMWWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[29/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -c ../alignment/algorithms/alignment/sdp/SDPFragment.cpp
[30/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -c ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/11/string:41,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:4,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
/usr/aarch64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[31/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -c ../alignment/algorithms/alignment/AlignmentUtils.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/11/string:41,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:4,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
/usr/aarch64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[32/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -c ../alignment/algorithms/alignment/BaseScoreFunction.cpp
[33/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -c ../alignment/algorithms/alignment/ExtendAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_Tp1> >::construct(std::allocator_traits<std::allocator<_Tp1> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_Tp1> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/11/unordered_map:40,
                 from /usr/aarch64-linux-gnu/include/c++/11/functional:61,
                 from /usr/aarch64-linux-gnu/include/c++/11/pstl/glue_algorithm_defs.h:13,
                 from /usr/aarch64-linux-gnu/include/c++/11/algorithm:74,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:4,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
/usr/aarch64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[34/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -c ../alignment/algorithms/alignment/GuidedAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/11/string:41,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/locale_classes.h:40,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/ios_base.h:41,
                 from /usr/aarch64-linux-gnu/include/c++/11/ios:42,
                 from /usr/aarch64-linux-gnu/include/c++/11/ostream:38,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:6,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
/usr/aarch64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[35/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -c ../alignment/algorithms/alignment/IDSScoreFunction.cpp
[36/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -c ../alignment/algorithms/alignment/KBandAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_Tp1> >::construct(std::allocator_traits<std::allocator<_Tp1> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_Tp1> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/11/unordered_map:40,
                 from /usr/aarch64-linux-gnu/include/c++/11/functional:61,
                 from /usr/aarch64-linux-gnu/include/c++/11/pstl/glue_algorithm_defs.h:13,
                 from /usr/aarch64-linux-gnu/include/c++/11/algorithm:74,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:4,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
/usr/aarch64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[37/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -c ../alignment/algorithms/alignment/QualityValueScoreFunction.cpp
[38/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -c ../alignment/algorithms/alignment/ScoreMatrices.cpp
[39/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -c ../alignment/algorithms/alignment/StringToScoreMatrix.cpp
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../alignment/datastructures/alignment/Alignment.cpp: In member function ‘void blasr::Alignment::CopyStats(blasr::Alignment&)’:
../alignment/datastructures/alignment/Alignment.cpp:35:47: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   35 |     AlignmentStats::CopyStats((AlignmentStats)rhs);
      |                                               ^~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/datastructures/alignment/Alignment.cpp:2:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
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[59/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o -c ../alignment/datastructures/anchoring/ClusterList.cpp
[60/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o -c ../alignment/datastructures/anchoring/MatchPos.cpp
[61/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -c ../alignment/datastructures/anchoring/WeightedInterval.cpp
[62/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o -c ../alignment/files/BaseSequenceIO.cpp
[63/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -c ../alignment/files/CCSIterator.cpp
[64/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -c ../alignment/files/FragmentCCSIterator.cpp
[65/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -c ../pbdata/FASTASequence.cpp
[66/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -c ../alignment/files/ReaderAgglomerate.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../alignment/files/ReaderAgglomerate.cpp:250:47:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[67/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -c ../alignment/format/CompareSequencesPrinter.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/11/string:41,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/locale_classes.h:40,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/ios_base.h:41,
                 from /usr/aarch64-linux-gnu/include/c++/11/ios:42,
                 from /usr/aarch64-linux-gnu/include/c++/11/istream:38,
                 from /usr/aarch64-linux-gnu/include/c++/11/fstream:38,
                 from ../alignment/format/CompareSequencesPrinter.hpp:4,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
/usr/aarch64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[68/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -c ../alignment/format/IntervalPrinter.cpp
[69/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -c ../alignment/format/SAMHeaderPrinter.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
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In file included from /usr/aarch64-linux-gnu/include/c++/11/cassert:44,
                 from ../alignment/statistics/StatUtils.hpp:5,
                 from ../alignment/simulator/CDFMap.hpp:8,
                 from ../alignment/simulator/LengthHistogram.hpp:8,
                 from ../alignment/simulator/LengthHistogram.cpp:1:
../alignment/simulator/CDFMap.hpp: In instantiation of ‘int CDFMap<T_Data>::SelectRandomValue(T_Data&) [with T_Data = int]’:
../alignment/simulator/LengthHistogram.cpp:27:87:   required from here
../alignment/simulator/CDFMap.hpp:37:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
   37 |     assert(cdf.size() >= 0);
      |            ~~~~~~~~~~~^~~~
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[94/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o -MF libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o -c ../pbdata/amos/AfgBasWriter.cpp
[95/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o -MF libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o -c ../pbdata/loadpulses/MetricField.cpp
[96/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -c ../pbdata/loadpulses/MovieAlnIndexLookupTable.cpp
[97/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o -c ../pbdata/metagenome/TitleTable.cpp
[98/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o -MF libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o -c ../pbdata/qvs/BlasrQualityValue.cpp
[99/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o -MF libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o -c ../pbdata/qvs/QualityTransform.cpp
[100/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o -c ../pbdata/reads/AcqParams.cpp
[101/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o -c ../pbdata/reads/BaseFile.cpp
[102/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o -c ../pbdata/reads/HoleXY.cpp
[103/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o -c ../pbdata/reads/PulseBaseCommon.cpp
[104/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -c ../pbdata/reads/PulseFile.cpp
[105/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -c ../pbdata/reads/ReadType.cpp
[106/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -c ../pbdata/reads/RegionAnnotation.cpp
[107/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -c ../pbdata/reads/RegionAnnotations.cpp
../pbdata/reads/RegionAnnotations.cpp: In constructor ‘RegionAnnotations::RegionAnnotations(UInt, const std::vector<RegionAnnotation>&, const std::vector<T_RegionType>&)’:
../pbdata/reads/RegionAnnotations.cpp:14:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   14 |     for (auto annotation : annotations) {
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<RegionAnnotation> RegionAnnotations::RegionAnnotationsOfType(RegionType) const’:
../pbdata/reads/RegionAnnotations.cpp:37:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   37 |         for (auto ra : table_)
      |                        ^~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘RegionAnnotation RegionAnnotations::TheHQRegion() const’:
../pbdata/reads/RegionAnnotations.cpp:65:22: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   65 |         return hqs_[0];
      |                      ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::AdapterIntervals() const’:
../pbdata/reads/RegionAnnotations.cpp:85:34: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   85 |     for (auto adapter : Adapters()) {
      |                                  ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::SubreadIntervals(DNALength, bool, bool) const’:
../pbdata/reads/RegionAnnotations.cpp:103:42: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  103 |             for (auto adapter : Adapters()) {
      |                                          ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp:122:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  122 |     for (auto insert : inserts) {
      |                        ^~~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
[108/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o -c ../pbdata/reads/RegionTable.cpp
[109/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o -c ../pbdata/reads/RegionTypeMap.cpp
[110/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o -c ../pbdata/reads/ScanData.cpp
[111/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -c ../pbdata/reads/ZMWGroupEntry.cpp
[112/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o -c ../pbdata/saf/AlnGroup.cpp
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[118/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o -c ../pbdata/sam/SAMAlignment.cpp
[119/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o -c ../pbdata/sam/SAMHeader.cpp
[120/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o -c ../pbdata/sam/SAMKeywordValuePair.cpp
[121/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o -c ../pbdata/utils/BitUtils.cpp
[122/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -c ../pbdata/utils/SMRTReadUtils.cpp
[123/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o -c ../pbdata/utils/SMRTTitle.cpp
[124/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -c ../pbdata/utils/TimeUtils.cpp
[125/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -c ../pbdata/BlasrFASTAReader.cpp
In file included from ../pbdata/FASTAReader.hpp:7,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
../pbdata/FASTASequence.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = FASTASequence; _Args = {FASTASequence}; _Tp = FASTASequence]’:
/usr/aarch64-linux-gnu/include/c++/11/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = FASTASequence; _Args = {FASTASequence}; _Tp = FASTASequence; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<FASTASequence>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_uninitialized.h:994:26:   required from ‘void std::__relocate_object_a(_Tp*, _Up*, _Allocator&) [with _Tp = FASTASequence; _Up = FASTASequence; _Allocator = std::allocator<FASTASequence>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_uninitialized.h:1032:26:   required from ‘_ForwardIterator std::__relocate_a_1(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = std::allocator<FASTASequence>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_uninitialized.h:1046:28:   required from ‘_ForwardIterator std::__relocate_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = std::allocator<FASTASequence>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:456:26:   required from ‘static std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_S_do_relocate(std::vector<_Tp, _Alloc>::pointer, std::vector<_Tp, _Alloc>::pointer, std::vector<_Tp, _Alloc>::pointer, std::vector<_Tp, _Alloc>::_Tp_alloc_type&, std::true_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::pointer = FASTASequence*; std::vector<_Tp, _Alloc>::_Tp_alloc_type = std::vector<FASTASequence>::_Tp_alloc_type; std::true_type = std::integral_constant<bool, true>]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:469:23:   required from ‘static std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_S_relocate(std::vector<_Tp, _Alloc>::pointer, std::vector<_Tp, _Alloc>::pointer, std::vector<_Tp, _Alloc>::pointer, std::vector<_Tp, _Alloc>::_Tp_alloc_type&) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::pointer = FASTASequence*; std::vector<_Tp, _Alloc>::_Tp_alloc_type = std::vector<FASTASequence>::_Tp_alloc_type]’
/usr/aarch64-linux-gnu/include/c++/11/bits/vector.tcc:648:16:   required from ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::size_type = long unsigned int]’
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:940:4:   required from ‘void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::size_type = long unsigned int]’
../pbdata/BlasrFASTAReader.cpp:441:21:   required from here
../pbdata/FASTASequence.hpp:19:7: warning: implicitly-declared ‘constexpr DNASequence::DNASequence(const DNASequence&)’ is deprecated [-Wdeprecated-copy]
   19 | class FASTASequence : public DNASequence
      |       ^~~~~~~~~~~~~
In file included from ../pbdata/FASTASequence.hpp:13,
                 from ../pbdata/FASTAReader.hpp:7,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
../pbdata/DNASequence.hpp:51:18: note: because ‘DNASequence’ has user-provided ‘DNASequence& DNASequence::operator=(const DNASequence&)’
   51 |     DNASequence &operator=(const DNASequence &rhs);
      |                  ^~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/11/string:41,
                 from ../pbdata/FASTAReader.hpp:5,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
/usr/aarch64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘constexpr FASTASequence::FASTASequence(const FASTASequence&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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[127/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o -c ../pbdata/CCSSequence.cpp
[128/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o -MF libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o -c ../pbdata/ChangeListID.cpp
[129/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -MF libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -c ../pbdata/CommandLineParser.cpp
[130/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -c ../pbdata/DNASequence.cpp
[131/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -c ../pbdata/FASTQSequence.cpp
[132/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -c ../pbdata/GFFFile.cpp
[133/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -c ../pbdata/MD5Utils.cpp
[134/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -MF libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -c ../pbdata/NucConversion.cpp
[135/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -c ../pbdata/PackedDNASequence.cpp
[136/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -MF libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -c ../pbdata/ReverseCompressIndex.cpp
[137/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -c ../pbdata/SMRTSequence.cpp
../pbdata/SMRTSequence.cpp: In member function ‘void SMRTSequence::MadeFromSubreadsAsPolymerase(const std::vector<SMRTSequence>&)’:
../pbdata/SMRTSequence.cpp:354:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  354 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
../pbdata/SMRTSequence.cpp:379:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  379 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
[138/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -c ../pbdata/StringUtils.cpp
[139/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -c ../unittest/pbdata/saf/MovieInfo_gtest.cpp
[140/187] /usr/bin/aarch64-linux-gnu-g++  -o libblasr.so.5.3.5 libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libblasr.so.5.3.5 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-rpath-link,/usr/lib/aarch64-linux-gnu/hdf5/serial /usr/lib/aarch64-linux-gnu/libpbbam.so /usr/lib/aarch64-linux-gnu/libpbcopper.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhts.so -lrt /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so -Wl,--end-group
[141/187] /usr/bin/meson --internal symbolextractor /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu libblasr.so.5.3.5 libblasr.so.5.3.5 libblasr.so.5.3.5.p/libblasr.so.5.3.5.symbols --cross-host=linux
[142/187] rm -f libblasr.a && /usr/bin/aarch64-linux-gnu-ar csrD libblasr.a libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o
[143/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[144/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -c ../unittest/pbdata/saf/AlnGroup_gtest.cpp
[145/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[146/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -c ../unittest/alignment/files/CCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/CCSIterator_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/CCSIterator_gtest.cpp:23:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[147/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -c ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[148/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -c ../unittest/pbdata/saf/RefInfo_gtest.cpp
[149/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMPrinter_gtest.cpp
[150/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMHeaderPrinter_gtest.cpp
[151/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/CmpIndexedStringTable_gtest.cpp
[152/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/AlignmentMap_gtest.cpp
[153/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/SequentialZmwGroupQuery_gtest.cpp
[154/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/PbiFilterZmwGroupQuery_gtest.cpp
[155/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -c ../unittest/alignment/utils/FileUtils_gtest.cpp
[156/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -c ../unittest/alignment/utils/RangeUtils_gtest.cpp
[157/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -c ../unittest/alignment/utils/RegionUtils_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[158/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -c ../unittest/hdf/HDFScanDataWriter_gtest.cpp
[159/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -c ../unittest/hdf/HDFCCSReader_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFCCSReader.hpp:93:57:   required from ‘int HDFCCSReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFCCSReader_gtest.cpp:39:5:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[160/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -c ../unittest/hdf/HDFZMWReader_gtest.cpp
[161/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -c ../unittest/hdf/HDFPlsReader_gtest.cpp
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[162/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -c ../unittest/hdf/HDF2DArray_gtest.cpp
[163/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -c ../unittest/hdf/HDFUtils_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../unittest/hdf/HDFUtils_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../unittest/hdf/HDFUtils_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[164/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -c ../unittest/hdf/HDFBasReader_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFBasReader_gtest.cpp:33:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[165/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -c ../unittest/hdf/HDFScanDataReader_gtest.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[166/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -c ../unittest/pbdata/metagenome/TitleTable_gtest.cpp
[167/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -c ../unittest/pbdata/utils/SMRTTitle_gtest.cpp
[168/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -c ../unittest/pbdata/qvs/QualityValueVector_gtest.cpp
[169/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -c ../unittest/pbdata/reads/RegionTypeMap_gtest.cpp
[170/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -c ../unittest/pbdata/reads/ReadType_gtest.cpp
[171/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -c ../unittest/pbdata/reads/RegionAnnotations_gtest.cpp
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[173/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -c ../unittest/pbdata/StringUtils_gtest.cpp
[174/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -c ../unittest/pbdata/SMRTSequence_gtest.cpp
../unittest/pbdata/SMRTSequence_gtest.cpp: In function ‘SMRTSequence _make_a_smrt_read_(const string&, const UInt&, DNALength, DNALength, const string&, bool, bool, bool, int, int, char, int, char)’:
../unittest/pbdata/SMRTSequence_gtest.cpp:66:12: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
   66 |     return smrt;
      |            ^~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymerase_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletion_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletionNoSubstitution_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/aarch64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
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[184/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -c ../unittest/pbdata/FASTQSequence_gtest.cpp
[185/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -c ../unittest/pbdata/DNASequence_gtest.cpp
[186/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -c ../unittest/pbdata/FASTAReader_gtest.cpp
[187/187] /usr/bin/aarch64-linux-gnu-g++  -o unittest/libblasr_unittest unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now '-Wl,-rpath,$ORIGIN/..:/usr/lib/aarch64-linux-gnu/hdf5/serial' -Wl,-rpath-link,/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/ -Wl,-rpath-link,/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--start-group libblasr.so.5.3.5 /usr/lib/aarch64-linux-gnu/libpbbam.so /usr/lib/aarch64-linux-gnu/libpbcopper.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhts.so -lrt /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libgtest_main.a -lpthread /usr/lib/aarch64-linux-gnu/libgtest.a -Wl,--end-group
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
	cd obj-aarch64-linux-gnu && DESTDIR=/<<BUILDDIR>>/pbseqlib-5.3.5\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install
[0/1] Installing files.
Installing libblasr.so.5.3.5 to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu
Installing symlink pointing to libblasr.so.5.3.5 to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libblasr.so
Installing libblasr.a to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu
Installing /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/LibBlasrConfig.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollection.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollectionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAtom.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAttributable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBaseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBaxWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCCSReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpExperimentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRefAlignmentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRootGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpSupportedFields.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCommonFG.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFConfig.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFFileLogGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFMovieInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFNewBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseDataFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRefGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRefInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFSentinalFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFSMRTSequenceReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFWriteBuffer.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFWriterBase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWMetricsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPColumn.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPFragment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineGuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineKBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentFormats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/BaseScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ExtendAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/FullQVAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaper.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaperImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/IDSScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/KBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/OneGapAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/QualityValueScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ScoreMatrices.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/StringToScoreMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpoint.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpointImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearch.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearchImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ClusterProbability.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/Coordinate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChain.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChainImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISQValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTree.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchors.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/compare/CompareStrings.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/compare
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/DifferenceCovers.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/Karkkainen.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/LightweightSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/MultikeyQuicksort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/qsufsort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/bwt/BWT.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/Occ.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/PackedHash.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/Pos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignedPair.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentCandidate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentContext.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentGapList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Alignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentStats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/ByteAlignment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpIndexedStringTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpReadGroupTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpRefSeqTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/FilterCriteria.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Path.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMQVConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/AnchorParameters.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/ClusterList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/MatchPos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/WeightedInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/files/BaseSequenceIO.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/CCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/FragmentCCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerateImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/IntervalPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMHeaderPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/StickAlignmentPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SummaryPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/VulgarPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/XMLPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/ipc/SharedMemoryAllocator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/ipc
Installing /<<PKGBUILDDIR>>/alignment/query/PbiFilterZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query
Installing /<<PKGBUILDDIR>>/alignment/query/SequentialZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query
Installing /<<PKGBUILDDIR>>/alignment/qvs/QualityValueProfile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/qvs
Installing /<<PKGBUILDDIR>>/alignment/simulator/CDFMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextOutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/LengthHistogram.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleListSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/QualitySample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/statistics/AnchorDistributionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/cdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/LookupAnchorDistribution.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/pdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulatorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/LCPTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SharedSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/ssort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArrayTypes.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/tuples/BaseTuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/CompressedDNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/CountedTuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTableImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/tuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMask.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatching.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatchingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleOperations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleTranslations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/utils/FileOfFileNames.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/FileUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/LogUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/PhredUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RangeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/SimpleXMLUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/MappingMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignmentImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment
Installing /<<PKGBUILDDIR>>/pbdata/amos/AfgBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/amos
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MetricField.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/Matrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/MatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/FindRandomSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/TitleTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/reads/AcqParams.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/HoleXY.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseBaseCommon.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadType.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotation.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotations.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTypeMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ScanData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ZMWGroupEntry.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/MovieInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/CigarString.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReadGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReferenceSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMFlag.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMHeader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePair.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePairImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReaderImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/utils/BitUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTReadUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTTitle.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/TimeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/CCSSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/ChangeListID.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CommandLineParser.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Compare4BitCompressed.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/defs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/DNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Enumerations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTAReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTQReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTQSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/GFFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/MD5Utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/MD5UtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/NucConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PacBioDefs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PackedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PrettyException.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/ReverseCompressIndex.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SMRTSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/StringUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Types.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/utilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/VectorUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/meson-private/libblasr.pc to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -p libpbdata-dev usr/include/libblasr/pbdata		usr/include/pbseq
dh_install -p libpbihdf-dev usr/include/libblasr/hdf		usr/include/pbseq
dh_install -p libblasr-dev  usr/include/libblasr/alignment	usr/include/pbseq
find -L debian/*/usr/include/ -type f -regextype posix-egrep -not -regex '.*(hpp|h)$' -delete
find debian/*/usr/include/ -name "*.mk" -delete
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --exclude-la \
	    --override s/libhdf5_serial_cpp103-dev/libhdf5-dev/ \
	    --override s/libpbbam1.6.0-dev/libpbbam-dev/ \
	    --override s/libpbcopper1.8.0-dev/libpbcopper-dev/ \
	    --movedev debian/tmp/usr/include/libblasr usr/include \
	    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/aarch64-linux-gnu/pkgconfig \
	    debian/tmp/usr/lib/*/libblasr.so
Library package automatic movement utility
 --> libhdf5-dev package exists.
 --> libpbbam-dev package exists.
 --> libpbcopper-dev package exists.
set -e
install -d -m 755 debian/libblasr-dev/usr/lib/aarch64-linux-gnu
install -d -m 755 debian/libblasr5.3.5/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libblasr.a debian/libblasr-dev/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libblasr.so debian/libblasr-dev/usr/lib/aarch64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libblasr.so.5.3.5 debian/libblasr5.3.5/usr/lib/aarch64-linux-gnu
PKGDEV=libblasr-dev
PKGSHL=libblasr5.3.5
install -d -m 755 debian/libblasr-dev/usr/include
mv debian/tmp/usr/include/libblasr debian/libblasr-dev/usr/include
install -d -m 755 debian/libblasr-dev/usr/lib/aarch64-linux-gnu/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libblasr-dev/usr/lib/aarch64-linux-gnu/pkgconfig
mv debian/libblasr-dev/usr/include/libblasr debian/libblasr-dev/usr/include/pbseq
mv debian/libblasr-dev/usr/include/pbseq/libblasr/LibBlasrConfig.h debian/libblasr-dev/usr/include/pbseq
dh_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package libblasr-dev: substitution variable ${devlibs:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libblasr-dev' in '../libblasr-dev_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libblasr5.3.5' in '../libblasr5.3.5_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libblasr5.3.5-dbgsym' in '../libblasr5.3.5-dbgsym_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libpbseq' in '../libpbseq_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libpbseq-dev' in '../libpbseq-dev_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libpbdata-dev' in '../libpbdata-dev_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libpbihdf-dev' in '../libpbihdf-dev_5.3.5+dfsg-4_arm64.deb'.
 dpkg-genbuildinfo --build=any -O../pbseqlib_5.3.5+dfsg-4_arm64.buildinfo
 dpkg-genchanges --build=any -O../pbseqlib_5.3.5+dfsg-4_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-03-12T09:51:42Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


pbseqlib_5.3.5+dfsg-4_arm64.changes:
------------------------------------

Format: 1.8
Date: Tue, 08 Mar 2022 11:42:12 +0100
Source: pbseqlib
Binary: libblasr-dev libblasr5.3.5 libblasr5.3.5-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev
Built-For-Profiles: cross nocheck
Architecture: arm64
Version: 5.3.5+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libblasr-dev - tools for aligning PacBio reads to target sequences (development
 libblasr5.3.5 - tools for aligning PacBio reads to target sequences
 libpbdata-dev - tools for handling PacBio sequences (development files)
 libpbihdf-dev - tools for handling PacBio hdf5 files (development files)
 libpbseq   - library for analyzing PacBio sequencing data
 libpbseq-dev - library for analyzing PacBio sequencing data (development files)
Closes: 1006777
Changes:
 pbseqlib (5.3.5+dfsg-4) unstable; urgency=medium
 .
   * Switch watch file to tags
   * d/rules: drop DEB_CXXFLAGS_MAINT_APPEND=-O3 -std=c++14
     Closes: #1006777
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 1263fb9f549adaeb42936038c1cc2c08 41228 libdevel optional libpbdata-dev_5.3.5+dfsg-4_arm64.deb
 d529dac75c1d5cfa0c5532177693fc5b 47720 libdevel optional libpbihdf-dev_5.3.5+dfsg-4_arm64.deb
 e03129cb93c95e905329a7a1211b6188 5500 libdevel optional libpbseq-dev_5.3.5+dfsg-4_arm64.deb
 bec8678755eb93da1e70ef1a3c7942fc 5472 science optional libpbseq_5.3.5+dfsg-4_arm64.deb
 472fda4d0afbff464521c4f64bb4e1bb 9128 science optional pbseqlib_5.3.5+dfsg-4_arm64.buildinfo

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: pbseqlib
Binary: libblasr-dev libblasr5.3.5 libblasr5.3.5-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev
Architecture: arm64
Version: 5.3.5+dfsg-4
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Sat, 12 Mar 2022 09:51:42 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 adduser (= 3.120),
 apt (= 2.4.1),
 autoconf (= 2.71-2),
 automake (= 1:1.16.5-1.1),
 autopoint (= 0.21-4),
 autotools-dev (= 20220109.1),
 base-files (= 12.2),
 base-passwd (= 3.5.52),
 bash (= 5.1-6),
 binutils (= 2.38-2),
 binutils-common (= 2.38-2),
 binutils-x86-64-linux-gnu (= 2.38-2),
 bsdextrautils (= 2.37.3-1+b1),
 bsdutils (= 1:2.37.3-1+b1),
 build-essential (= 12.9),
 bzip2 (= 1.0.8-5),
 cmake (= 3.22.1-1+b1),
 cmake-data (= 3.22.1-1),
 coreutils (= 8.32-4.1),
 cpp (= 4:11.2.0-2),
 cpp-11 (= 11.2.0-18),
 d-shlibs (= 0.104),
 dash (= 0.5.11+git20210903+057cd650a4ed-7),
 debconf (= 1.5.79),
 debhelper (= 13.6),
 debian-archive-keyring (= 2021.1.1),
 debianutils (= 5.7-0.1),
 dh-autoreconf (= 20),
 dh-elpa-helper (= 2.0.10),
 dh-strip-nondeterminism (= 1.13.0-1),
 diffutils (= 1:3.7-5),
 dpkg (= 1.21.1),
 dpkg-dev (= 1.21.1),
 dwz (= 0.14-1),
 emacsen-common (= 3.0.4),
 file (= 1:5.41-2),
 findutils (= 4.9.0-2),
 g++ (= 4:11.2.0-2),
 g++-11 (= 11.2.0-18),
 gcc (= 4:11.2.0-2),
 gcc-11 (= 11.2.0-18),
 gcc-11-base (= 11.2.0-18),
 gcc-12-base (= 12-20220302-1),
 gettext (= 0.21-4),
 gettext-base (= 0.21-4),
 googletest (= 1.11.0-3),
 gpgv (= 2.2.27-3),
 grep (= 3.7-1),
 groff-base (= 1.22.4-8),
 gzip (= 1.10-4),
 hdf5-helpers (= 1.10.7+repack-4),
 hostname (= 3.23),
 init-system-helpers (= 1.62),
 intltool-debian (= 0.35.0+20060710.5),
 libacl1 (= 2.3.1-1),
 libaec-dev (= 1.0.6-1),
 libaec0 (= 1.0.6-1),
 libapt-pkg6.0 (= 2.4.1),
 libarchive-zip-perl (= 1.68-1),
 libarchive13 (= 3.5.2-1),
 libasan6 (= 11.2.0-18),
 libatomic1 (= 12-20220302-1),
 libattr1 (= 1:2.5.1-1),
 libaudit-common (= 1:3.0.7-1),
 libaudit1 (= 1:3.0.7-1),
 libbinutils (= 2.38-2),
 libblkid1 (= 2.37.3-1+b1),
 libboost-dev (= 1.74.0.3),
 libboost1.74-dev (= 1.74.0-14),
 libbrotli1 (= 1.0.9-2+b3),
 libbz2-1.0 (= 1.0.8-5),
 libc-bin (= 2.33-7),
 libc-dev-bin (= 2.33-7),
 libc6 (= 2.33-7),
 libc6-dev (= 2.33-7),
 libcap-ng0 (= 0.7.9-2.2+b1),
 libcap2 (= 1:2.44-1),
 libcc1-0 (= 12-20220302-1),
 libcom-err2 (= 1.46.5-2),
 libcrypt-dev (= 1:4.4.27-1.1),
 libcrypt1 (= 1:4.4.27-1.1),
 libctf-nobfd0 (= 2.38-2),
 libctf0 (= 2.38-2),
 libcurl3-gnutls (= 7.82.0-1),
 libcurl4 (= 7.82.0-1),
 libcurl4-gnutls-dev (= 7.82.0-1),
 libdb5.3 (= 5.3.28+dfsg1-0.8),
 libdebconfclient0 (= 0.261),
 libdebhelper-perl (= 13.6),
 libdeflate-dev (= 1.10-2),
 libdeflate0 (= 1.10-2),
 libdpkg-perl (= 1.21.1),
 libelf1 (= 0.186-1),
 libexpat1 (= 2.4.7-1),
 libffi8 (= 3.4.2-4),
 libfile-stripnondeterminism-perl (= 1.13.0-1),
 libgcc-11-dev (= 11.2.0-18),
 libgcc-s1 (= 12-20220302-1),
 libgcrypt20 (= 1.9.4-5),
 libgdbm-compat4 (= 1.23-1),
 libgdbm6 (= 1.23-1),
 libgfortran5 (= 12-20220302-1),
 libglib2.0-0 (= 2.70.4-1),
 libgmp10 (= 2:6.2.1+dfsg-3),
 libgnutls30 (= 3.7.3-4+b1),
 libgomp1 (= 12-20220302-1),
 libgpg-error0 (= 1.43-3),
 libgssapi-krb5-2 (= 1.19.2-2),
 libgtest-dev (= 1.11.0-3),
 libhdf5-103-1 (= 1.10.7+repack-4),
 libhdf5-cpp-103-1 (= 1.10.7+repack-4),
 libhdf5-dev (= 1.10.7+repack-4),
 libhdf5-fortran-102 (= 1.10.7+repack-4),
 libhdf5-hl-100 (= 1.10.7+repack-4),
 libhdf5-hl-cpp-100 (= 1.10.7+repack-4),
 libhdf5-hl-fortran-100 (= 1.10.7+repack-4),
 libhogweed6 (= 3.7.3-1),
 libhts-dev (= 1.13+ds-2),
 libhts3 (= 1.13+ds-2),
 libhtscodecs2 (= 1.2.1-1),
 libicu67 (= 67.1-7),
 libidn2-0 (= 2.3.2-2),
 libisl23 (= 0.24-2),
 libitm1 (= 12-20220302-1),
 libjpeg-dev (= 1:2.1.2-1),
 libjpeg62-turbo (= 1:2.1.2-1),
 libjpeg62-turbo-dev (= 1:2.1.2-1),
 libjsoncpp25 (= 1.9.5-3),
 libk5crypto3 (= 1.19.2-2),
 libkeyutils1 (= 1.6.1-3),
 libkrb5-3 (= 1.19.2-2),
 libkrb5support0 (= 1.19.2-2),
 libldap-2.4-2 (= 2.4.59+dfsg-1+b1),
 liblsan0 (= 12-20220302-1),
 liblz4-1 (= 1.9.3-2),
 liblzma-dev (= 5.2.5-2),
 liblzma5 (= 5.2.5-2),
 libmagic-mgc (= 1:5.41-2),
 libmagic1 (= 1:5.41-2),
 libmount1 (= 2.37.3-1+b1),
 libmpc3 (= 1.2.1-1),
 libmpdec3 (= 2.5.1-2),
 libmpfr6 (= 4.1.0-3),
 libncurses6 (= 6.3-2),
 libncursesw6 (= 6.3-2),
 libnettle8 (= 3.7.3-1),
 libnghttp2-14 (= 1.43.0-1),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libp11-kit0 (= 0.24.0-6),
 libpam-modules (= 1.4.0-11),
 libpam-modules-bin (= 1.4.0-11),
 libpam-runtime (= 1.4.0-11),
 libpam0g (= 1.4.0-11),
 libpbbam-dev (= 1.7.0+dfsg-2),
 libpbbam1.7.0 (= 1.7.0+dfsg-2),
 libpbcopper-dev (= 2.0.0+dfsg-2),
 libpbcopper1.9.3 (= 1.9.3+dfsg-2),
 libpbcopper2.0.0 (= 2.0.0+dfsg-2),
 libpcre2-8-0 (= 10.39-3),
 libpcre3 (= 2:8.39-13),
 libperl5.34 (= 5.34.0-3),
 libpipeline1 (= 1.5.5-1),
 libprocps8 (= 2:3.3.17-7+b1),
 libpsl5 (= 0.21.0-1.2),
 libpython3-stdlib (= 3.9.8-1),
 libpython3.9-minimal (= 3.9.10-2),
 libpython3.9-stdlib (= 3.9.10-2),
 libquadmath0 (= 12-20220302-1),
 libreadline8 (= 8.1.2-1),
 librhash0 (= 1.4.2-1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.28+dfsg-2),
 libsasl2-modules-db (= 2.1.28+dfsg-2),
 libseccomp2 (= 2.5.3-2),
 libselinux1 (= 3.3-1+b2),
 libsemanage-common (= 3.3-1),
 libsemanage2 (= 3.3-1+b2),
 libsepol2 (= 3.3-1),
 libsigsegv2 (= 2.14-1),
 libsmartcols1 (= 2.37.3-1+b1),
 libsqlite3-0 (= 3.38.0-1),
 libssh2-1 (= 1.10.0-3),
 libssl-dev (= 1.1.1m-1),
 libssl1.1 (= 1.1.1m-1),
 libstdc++-11-dev (= 11.2.0-18),
 libstdc++6 (= 12-20220302-1),
 libsub-override-perl (= 0.09-2),
 libsystemd0 (= 250.3-2),
 libsz2 (= 1.0.6-1),
 libtasn1-6 (= 4.18.0-4),
 libtinfo6 (= 6.3-2),
 libtirpc-common (= 1.3.2-2),
 libtirpc-dev (= 1.3.2-2),
 libtirpc3 (= 1.3.2-2),
 libtool (= 2.4.6-15),
 libtsan0 (= 11.2.0-18),
 libubsan1 (= 12-20220302-1),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 250.3-2),
 libunistring2 (= 1.0-1),
 libuuid1 (= 2.37.3-1+b1),
 libuv1 (= 1.43.0-1),
 libxml2 (= 2.9.13+dfsg-1),
 libxxhash0 (= 0.8.1-1),
 libzstd1 (= 1.4.8+dfsg-3),
 linux-libc-dev (= 5.16.12-1),
 login (= 1:4.11.1+dfsg1-2),
 lsb-base (= 11.1.0),
 m4 (= 1.4.18-5),
 make (= 4.3-4.1),
 man-db (= 2.10.1-1),
 mawk (= 1.3.4.20200120-3+b1),
 media-types (= 6.0.0),
 meson (= 0.61.2-1),
 ncurses-base (= 6.3-2),
 ncurses-bin (= 6.3-2),
 ninja-build (= 1.10.1-1),
 passwd (= 1:4.11.1+dfsg1-2),
 patch (= 2.7.6-7),
 perl (= 5.34.0-3),
 perl-base (= 5.34.0-3),
 perl-modules-5.34 (= 5.34.0-3),
 pkg-config (= 0.29.2-1),
 po-debconf (= 1.0.21+nmu1),
 procps (= 2:3.3.17-7+b1),
 python3 (= 3.9.8-1),
 python3-distutils (= 3.9.10-1),
 python3-lib2to3 (= 3.9.10-1),
 python3-minimal (= 3.9.8-1),
 python3-pkg-resources (= 59.6.0-1.2),
 python3.9 (= 3.9.10-2),
 python3.9-minimal (= 3.9.10-2),
 readline-common (= 8.1.2-1),
 rpcsvc-proto (= 1.4.2-4),
 sed (= 4.8-1),
 sensible-utils (= 0.0.17),
 sysvinit-utils (= 3.01-1),
 tar (= 1.34+dfsg-1),
 tzdata (= 2021e-1),
 util-linux (= 2.37.3-1+b1),
 xz-utils (= 5.2.5-2),
 zlib1g (= 1:1.2.11.dfsg-2),
 zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1646736132"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libblasr-dev_5.3.5+dfsg-4_arm64.deb
-----------------------------------

 new Debian package, version 2.0.
 size 2003264 bytes: control archive=9484 bytes.
     816 bytes,    20 lines      control              
   45418 bytes,   467 lines      md5sums              
 Package: libblasr-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 15342
 Depends: libblasr5.3.5 (= 5.3.5+dfsg-4), libpbdata-dev (= 5.3.5+dfsg-4)
 Breaks: libblasr (<< 5.3.3)
 Replaces: libblasr (<< 5.3.3)
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the alignment
  sublibrary.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/
-rw-r--r-- root/root       130 2022-03-08 10:42 ./usr/include/pbseq/LibBlasrConfig.h
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/
-rw-r--r-- root/root      2868 2021-02-18 09:42 ./usr/include/pbseq/alignment/MappingMetrics.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/algorithms/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/algorithms/alignment/
-rw-r--r-- root/root     21547 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp
-rw-r--r-- root/root     14470 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp
-rw-r--r-- root/root       253 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentFormats.hpp
-rw-r--r-- root/root      5585 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp
-rw-r--r-- root/root     18470 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
-rw-r--r-- root/root       446 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/BaseScoreFunction.hpp
-rw-r--r-- root/root      1664 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
-rw-r--r-- root/root      4641 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
-rw-r--r-- root/root     14955 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/ExtendAlign.hpp
-rw-r--r-- root/root      5694 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/FullQVAlign.hpp
-rw-r--r-- root/root       737 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/GraphPaper.hpp
-rw-r--r-- root/root      4795 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/GraphPaperImpl.hpp
-rw-r--r-- root/root     21551 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp
-rw-r--r-- root/root      5922 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/IDSScoreFunction.hpp
-rw-r--r-- root/root     12931 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp
-rw-r--r-- root/root     12739 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp
-rw-r--r-- root/root      2595 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/QualityValueScoreFunction.hpp
-rw-r--r-- root/root      2536 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp
-rw-r--r-- root/root     26297 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp
-rw-r--r-- root/root       508 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/SWAlign.hpp
-rw-r--r-- root/root     15288 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/SWAlignImpl.hpp
-rw-r--r-- root/root       378 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/ScoreMatrices.hpp
-rw-r--r-- root/root       212 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/StringToScoreMatrix.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/
-rw-r--r-- root/root       432 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSort.hpp
-rw-r--r-- root/root       509 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp
-rw-r--r-- root/root      7162 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h
-rw-r--r-- root/root       502 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPColumn.hpp
-rw-r--r-- root/root      2931 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPFragment.hpp
-rw-r--r-- root/root      1120 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSet.hpp
-rw-r--r-- root/root      2262 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/algorithms/anchoring/
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-rw-r--r-- root/root      2371 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpointImpl.hpp
-rw-r--r-- root/root       361 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/ClusterProbability.hpp
-rw-r--r-- root/root      1194 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/Coordinate.hpp
-rw-r--r-- root/root      5936 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/FindMaxInterval.hpp
-rw-r--r-- root/root     33971 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp
-rw-r--r-- root/root      1411 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/GlobalChain.hpp
-rw-r--r-- root/root      7592 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/GlobalChainImpl.hpp
-rw-r--r-- root/root       743 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValue.hpp
-rw-r--r-- root/root      5054 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValueImpl.hpp
-rw-r--r-- root/root      1517 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightor.hpp
-rw-r--r-- root/root      4041 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp
-rw-r--r-- root/root       900 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISQValueWeightor.hpp
-rw-r--r-- root/root       267 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightor.hpp
-rw-r--r-- root/root       360 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp
-rw-r--r-- root/root       818 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp
-rw-r--r-- root/root      3755 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp
-rw-r--r-- root/root      1848 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArray.hpp
-rw-r--r-- root/root     11118 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp
-rw-r--r-- root/root      1964 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/PrioritySearchTree.hpp
-rw-r--r-- root/root     10112 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp
-rw-r--r-- root/root      1642 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/ScoreAnchors.hpp
-rw-r--r-- root/root      5620 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/algorithms/compare/
-rw-r--r-- root/root      1815 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/compare/CompareStrings.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/algorithms/sorting/
-rw-r--r-- root/root      1508 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/sorting/DifferenceCovers.hpp
-rw-r--r-- root/root      4672 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/sorting/Karkkainen.hpp
-rw-r--r-- root/root      3130 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/sorting/LightweightSuffixArray.hpp
-rw-r--r-- root/root      1683 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/sorting/MultikeyQuicksort.hpp
-rw-r--r-- root/root     14544 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/sorting/qsufsort.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/bwt/
-rw-r--r-- root/root      9659 2021-02-18 09:42 ./usr/include/pbseq/alignment/bwt/BWT.hpp
-rw-r--r-- root/root      8156 2021-02-18 09:42 ./usr/include/pbseq/alignment/bwt/Occ.hpp
-rw-r--r-- root/root     12460 2021-02-18 09:42 ./usr/include/pbseq/alignment/bwt/PackedHash.hpp
-rw-r--r-- root/root      1121 2021-02-18 09:42 ./usr/include/pbseq/alignment/bwt/Pos.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/datastructures/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/datastructures/alignment/
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-rw-r--r-- root/root      6138 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp
-rw-r--r-- root/root     18126 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp
-rw-r--r-- root/root       652 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/AlignmentContext.hpp
-rw-r--r-- root/root       422 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/AlignmentGapList.h
-rw-r--r-- root/root       445 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/AlignmentMap.hpp
-rw-r--r-- root/root       463 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp
-rw-r--r-- root/root     11850 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h
-rw-r--r-- root/root       849 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/CmpFile.hpp
-rw-r--r-- root/root      1611 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/CmpIndexedStringTable.h
-rw-r--r-- root/root       412 2021-02-18 09:42 ./usr/include/pbseq/alignment/datastructures/alignment/CmpReadGroupTable.h
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/libblasr/pbdata/matrix/
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/libblasr/pbdata/metagenome/
-rw-r--r-- root/root      2280 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/metagenome/FindRandomSequence.hpp
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/libblasr/pbdata/reads/
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-rw-r--r-- root/root      2429 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/reads/PulseFile.hpp
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-rw-r--r-- root/root      1028 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/reads/ReadInterval.hpp
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-rw-r--r-- root/root      5799 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/reads/RegionAnnotation.hpp
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-rw-r--r-- root/root      2388 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/reads/ScanData.hpp
-rw-r--r-- root/root       294 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/reads/ZMWGroupEntry.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/libblasr/pbdata/saf/
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/libblasr/pbdata/sam/
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-rw-r--r-- root/root       538 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/sam/CigarString.h
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-rw-r--r-- root/root      2346 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/sam/SAMReader.hpp
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-rw-r--r-- root/root       532 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utils.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/libblasr/pbdata/utils/
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-rw-r--r-- root/root       523 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utils/SMRTReadUtils.hpp
-rw-r--r-- root/root      1099 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utils/SMRTTitle.hpp
-rw-r--r-- root/root       118 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utils/TimeUtils.hpp
-rw-r--r-- root/root      1269 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utilsImpl.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/
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lrwxrwxrwx root/root         0 2022-03-08 10:42 ./usr/lib/aarch64-linux-gnu/libblasr.so -> libblasr.so.5.3.5
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/aarch64-linux-gnu/pkgconfig/
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
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-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libblasr-dev/copyright


libblasr5.3.5-dbgsym_5.3.5+dfsg-4_arm64.deb
-------------------------------------------

 new Debian package, version 2.0.
 size 7795576 bytes: control archive=564 bytes.
     417 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: libblasr5.3.5-dbgsym
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Auto-Built-Package: debug-symbols
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 7939
 Depends: libblasr5.3.5 (= 5.3.5+dfsg-4)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libblasr5.3.5
 Build-Ids: 9d17098fc9afb1b11767fad969fdfba9d0e8b2d0

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/debug/.build-id/9d/
-rw-r--r-- root/root   8118440 2022-03-08 10:42 ./usr/lib/debug/.build-id/9d/17098fc9afb1b11767fad969fdfba9d0e8b2d0.debug
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-03-08 10:42 ./usr/share/doc/libblasr5.3.5-dbgsym -> libblasr5.3.5


libblasr5.3.5_5.3.5+dfsg-4_arm64.deb
------------------------------------

 new Debian package, version 2.0.
 size 999168 bytes: control archive=968 bytes.
     797 bytes,    17 lines      control              
     232 bytes,     3 lines      md5sums              
      45 bytes,     1 lines      shlibs               
      65 bytes,     2 lines      triggers             
 Package: libblasr5.3.5
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3026
 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libhdf5-103-1, libhdf5-cpp-103-1 (>= 1.10.5), libpbbam1.7.0 (>= 1.7.0+dfsg), libpbcopper2.0.0 (>= 2.0.0+dfsg), libstdc++6 (>= 11)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the alignment sublibrary.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/aarch64-linux-gnu/
-rw-r--r-- root/root   3079336 2022-03-08 10:42 ./usr/lib/aarch64-linux-gnu/libblasr.so.5.3.5
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/libblasr5.3.5/
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-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libblasr5.3.5/copyright


libpbdata-dev_5.3.5+dfsg-4_arm64.deb
------------------------------------

 new Debian package, version 2.0.
 size 41228 bytes: control archive=3044 bytes.
     691 bytes,    18 lines      control              
    6805 bytes,    85 lines      md5sums              
 Package: libpbdata-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 228
 Depends: libpbcopper-dev
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the pbdata
  sublibrary.

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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/
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-rw-r--r-- root/root       294 2021-02-18 09:42 ./usr/include/pbseq/pbdata/reads/ZMWGroupEntry.hpp
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-rw-r--r-- root/root       477 2021-02-18 09:42 ./usr/include/pbseq/pbdata/saf/RefInfo.hpp
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-rw-r--r-- root/root       538 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/CigarString.h
-rw-r--r-- root/root       898 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/ReadGroup.hpp
-rw-r--r-- root/root      1639 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/ReferenceSequence.hpp
-rw-r--r-- root/root      2342 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMAlignment.hpp
-rw-r--r-- root/root       853 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMFlag.h
-rw-r--r-- root/root       420 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMHeader.hpp
-rw-r--r-- root/root      1137 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMKeywordValuePair.hpp
-rw-r--r-- root/root       833 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMKeywordValuePairImpl.hpp
-rw-r--r-- root/root      2346 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMReader.hpp
-rw-r--r-- root/root      8002 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMReaderImpl.hpp
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-rw-r--r-- root/root      1099 2021-02-18 09:42 ./usr/include/pbseq/pbdata/utils/SMRTTitle.hpp
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
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libpbihdf-dev_5.3.5+dfsg-4_arm64.deb
------------------------------------

 new Debian package, version 2.0.
 size 47720 bytes: control archive=2132 bytes.
     668 bytes,    17 lines      control              
    4158 bytes,    55 lines      md5sums              
 Package: libpbihdf-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 330
 Depends: libhdf5-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio hdf5 files (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the hdf
  sublibrary.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/hdf/
-rw-r--r-- root/root      5767 2022-03-08 10:42 ./usr/include/pbseq/hdf/BufferedHDF2DArray.hpp
-rw-r--r-- root/root     12469 2022-03-08 10:42 ./usr/include/pbseq/hdf/BufferedHDF2DArrayImpl.hpp
-rw-r--r-- root/root      8257 2022-03-08 10:42 ./usr/include/pbseq/hdf/BufferedHDFArray.hpp
-rw-r--r-- root/root     13367 2022-03-08 10:42 ./usr/include/pbseq/hdf/BufferedHDFArrayImpl.hpp
-rw-r--r-- root/root       970 2021-02-18 09:42 ./usr/include/pbseq/hdf/DatasetCollection.hpp
-rw-r--r-- root/root       967 2021-02-18 09:42 ./usr/include/pbseq/hdf/DatasetCollectionImpl.hpp
-rw-r--r-- root/root       653 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDF2DArray.hpp
-rw-r--r-- root/root      1129 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFAlnGroup.hpp
-rw-r--r-- root/root       481 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFAlnGroupGroup.hpp
-rw-r--r-- root/root      1125 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFAlnInfoGroup.hpp
-rw-r--r-- root/root      2361 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFArray.hpp
-rw-r--r-- root/root      5823 2022-03-08 10:42 ./usr/include/pbseq/hdf/HDFAtom.hpp
-rw-r--r-- root/root       488 2022-03-08 10:42 ./usr/include/pbseq/hdf/HDFAttributable.hpp
-rw-r--r-- root/root     41860 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBasReader.hpp
-rw-r--r-- root/root     13629 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBasWriter.hpp
-rw-r--r-- root/root      6346 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBaseCallsWriter.hpp
-rw-r--r-- root/root      3471 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBaxWriter.hpp
-rw-r--r-- root/root     11612 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCCSReader.hpp
-rw-r--r-- root/root      1002 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpData.hpp
-rw-r--r-- root/root      2463 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpExperimentGroup.hpp
-rw-r--r-- root/root     37131 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpFile.hpp
-rw-r--r-- root/root     29734 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpReader.hpp
-rw-r--r-- root/root      4075 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpRefAlignmentGroup.hpp
-rw-r--r-- root/root      2186 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpRootGroup.hpp
-rw-r--r-- root/root       226 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpSupportedFields.hpp
-rw-r--r-- root/root       128 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCommonFG.hpp
-rw-r--r-- root/root       174 2022-03-08 10:42 ./usr/include/pbseq/hdf/HDFConfig.hpp
-rw-r--r-- root/root      1465 2022-03-08 10:42 ./usr/include/pbseq/hdf/HDFData.hpp
-rw-r--r-- root/root       733 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFFile.hpp
-rw-r--r-- root/root      1851 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFFileLogGroup.hpp
-rw-r--r-- root/root       703 2022-03-08 10:42 ./usr/include/pbseq/hdf/HDFGroup.hpp
-rw-r--r-- root/root      2262 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFMovieInfoGroup.hpp
-rw-r--r-- root/root       856 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFNewBasReader.hpp
-rw-r--r-- root/root     23141 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPlsReader.hpp
-rw-r--r-- root/root      6703 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPlsWriter.hpp
-rw-r--r-- root/root      7986 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPulseCallsWriter.hpp
-rw-r--r-- root/root      1795 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPulseDataFile.hpp
-rw-r--r-- root/root      3358 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPulseWriter.hpp
-rw-r--r-- root/root      1920 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRefGroupGroup.hpp
-rw-r--r-- root/root      3006 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRefInfoGroup.hpp
-rw-r--r-- root/root      1333 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRegionTableReader.hpp
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-rw-r--r-- root/root      1923 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRegionsWriter.hpp
-rw-r--r-- root/root      2167 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFSMRTSequenceReader.hpp
-rw-r--r-- root/root      3280 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFScanDataReader.hpp
-rw-r--r-- root/root      2330 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFScanDataWriter.hpp
-rw-r--r-- root/root       484 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFSentinalFile.hpp
-rw-r--r-- root/root      1599 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFUtils.hpp
-rw-r--r-- root/root       928 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFWriteBuffer.hpp
-rw-r--r-- root/root      5105 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFWriterBase.hpp
-rw-r--r-- root/root      2023 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFZMWMetricsWriter.hpp
-rw-r--r-- root/root       991 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFZMWReader.hpp
-rw-r--r-- root/root      3966 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFZMWWriter.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/libpbihdf-dev/
-rw-r--r-- root/root      2218 2022-03-08 10:42 ./usr/share/doc/libpbihdf-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libpbihdf-dev/copyright


libpbseq-dev_5.3.5+dfsg-4_arm64.deb
-----------------------------------

 new Debian package, version 2.0.
 size 5500 bytes: control archive=776 bytes.
     770 bytes,    17 lines      control              
     152 bytes,     2 lines      md5sums              
 Package: libpbseq-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 14
 Depends: libpbdata-dev (= 5.3.5+dfsg-4), libpbihdf-dev (= 5.3.5+dfsg-4), libblasr-dev (= 5.3.5+dfsg-4)
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component development files.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/libpbseq-dev/
-rw-r--r-- root/root      2218 2022-03-08 10:42 ./usr/share/doc/libpbseq-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libpbseq-dev/copyright


libpbseq_5.3.5+dfsg-4_arm64.deb
-------------------------------

 new Debian package, version 2.0.
 size 5472 bytes: control archive=752 bytes.
     681 bytes,    17 lines      control              
     144 bytes,     2 lines      md5sums              
 Package: libpbseq
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 14
 Depends: libblasr5.3.5 (= 5.3.5+dfsg-4)
 Section: science
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component shared libraries.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/libpbseq/
-rw-r--r-- root/root      2218 2022-03-08 10:42 ./usr/share/doc/libpbseq/changelog.Debian.gz
-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libpbseq/copyright


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Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b2 [15.5 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.28-1 [17.3 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b2 [25.7 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libconst-fast-perl all 0.014-1.1 [8552 B]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.27-1+b1 [129 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2+b1 [40.5 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.01-2+b1 [35.7 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-netmask-perl all 2.0001-1 [32.2 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-1+b6 [104 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b3 [26.1 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b4 [28.0 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-2 [7448 B]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-2 [8992 B]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-3 [60.5 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b2 [173 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b4 [12.1 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b2 [13.9 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.122-1 [56.0 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b8 [17.5 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.009-1+b1 [12.2 kB]
Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1+b1 [46.9 kB]
Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.023+ds-1 [99.7 kB]
Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.023+ds-1 [104 kB]
Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB]
Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.22-1 [51.2 kB]
Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.27-1 [28.5 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b3 [27.8 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b9 [8800 B]
Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1+b1 [13.6 kB]
Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-1+b1 [197 kB]
Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB]
Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b4 [75.8 kB]
Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b3 [20.3 kB]
Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.10-1 [91.0 kB]
Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB]
Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1+b1 [35.9 kB]
Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.23-2 [90.0 kB]
Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB]
Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.114.0 [1382 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 6757 kB in 0s (29.2 MB/s)
Selecting previously unselected package diffstat.
(Reading database ... 41981 files and directories currently installed.)
Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ...
Unpacking diffstat (1.64-1) ...
Selecting previously unselected package libassuan0:amd64.
Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ...
Unpacking libassuan0:amd64 (2.5.5-1) ...
Selecting previously unselected package gpgconf.
Preparing to unpack .../02-gpgconf_2.2.27-3_amd64.deb ...
Unpacking gpgconf (2.2.27-3) ...
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Preparing to unpack .../03-gpg_2.2.27-3_amd64.deb ...
Unpacking gpg (2.2.27-3) ...
Selecting previously unselected package libaliased-perl.
Preparing to unpack .../04-libaliased-perl_0.34-1.1_all.deb ...
Unpacking libaliased-perl (0.34-1.1) ...
Selecting previously unselected package libapt-pkg-perl.
Preparing to unpack .../05-libapt-pkg-perl_0.1.40+b1_amd64.deb ...
Unpacking libapt-pkg-perl (0.1.40+b1) ...
Selecting previously unselected package libb-hooks-op-check-perl.
Preparing to unpack .../06-libb-hooks-op-check-perl_0.22-1+b4_amd64.deb ...
Unpacking libb-hooks-op-check-perl (0.22-1+b4) ...
Selecting previously unselected package libdynaloader-functions-perl.
Preparing to unpack .../07-libdynaloader-functions-perl_0.003-1.1_all.deb ...
Unpacking libdynaloader-functions-perl (0.003-1.1) ...
Selecting previously unselected package libdevel-callchecker-perl.
Preparing to unpack .../08-libdevel-callchecker-perl_0.008-1+b3_amd64.deb ...
Unpacking libdevel-callchecker-perl (0.008-1+b3) ...
Selecting previously unselected package libparams-classify-perl.
Preparing to unpack .../09-libparams-classify-perl_0.015-1+b4_amd64.deb ...
Unpacking libparams-classify-perl (0.015-1+b4) ...
Selecting previously unselected package libmodule-runtime-perl.
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Unpacking libmodule-runtime-perl (0.016-1) ...
Selecting previously unselected package libtry-tiny-perl.
Preparing to unpack .../11-libtry-tiny-perl_0.31-1_all.deb ...
Unpacking libtry-tiny-perl (0.31-1) ...
Selecting previously unselected package libmodule-implementation-perl.
Preparing to unpack .../12-libmodule-implementation-perl_0.09-1.1_all.deb ...
Unpacking libmodule-implementation-perl (0.09-1.1) ...
Selecting previously unselected package libsub-exporter-progressive-perl.
Preparing to unpack .../13-libsub-exporter-progressive-perl_0.001013-1_all.deb ...
Unpacking libsub-exporter-progressive-perl (0.001013-1) ...
Selecting previously unselected package libvariable-magic-perl.
Preparing to unpack .../14-libvariable-magic-perl_0.62-1+b4_amd64.deb ...
Unpacking libvariable-magic-perl (0.62-1+b4) ...
Selecting previously unselected package libb-hooks-endofscope-perl.
Preparing to unpack .../15-libb-hooks-endofscope-perl_0.26-1_all.deb ...
Unpacking libb-hooks-endofscope-perl (0.26-1) ...
Selecting previously unselected package libcapture-tiny-perl.
Preparing to unpack .../16-libcapture-tiny-perl_0.48-1_all.deb ...
Unpacking libcapture-tiny-perl (0.48-1) ...
Selecting previously unselected package libclass-data-inheritable-perl.
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Unpacking libclass-data-inheritable-perl (0.08-3) ...
Selecting previously unselected package libclass-method-modifiers-perl.
Preparing to unpack .../18-libclass-method-modifiers-perl_2.13-1_all.deb ...
Unpacking libclass-method-modifiers-perl (2.13-1) ...
Selecting previously unselected package libclass-xsaccessor-perl.
Preparing to unpack .../19-libclass-xsaccessor-perl_1.19-3+b8_amd64.deb ...
Unpacking libclass-xsaccessor-perl (1.19-3+b8) ...
Selecting previously unselected package libclone-perl.
Preparing to unpack .../20-libclone-perl_0.45-1+b2_amd64.deb ...
Unpacking libclone-perl (0.45-1+b2) ...
Selecting previously unselected package libconfig-tiny-perl.
Preparing to unpack .../21-libconfig-tiny-perl_2.28-1_all.deb ...
Unpacking libconfig-tiny-perl (2.28-1) ...
Selecting previously unselected package libparams-util-perl.
Preparing to unpack .../22-libparams-util-perl_1.102-1+b2_amd64.deb ...
Unpacking libparams-util-perl (1.102-1+b2) ...
Selecting previously unselected package libsub-install-perl.
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Unpacking libsub-install-perl (0.928-1.1) ...
Selecting previously unselected package libdata-optlist-perl.
Preparing to unpack .../24-libdata-optlist-perl_0.112-1_all.deb ...
Unpacking libdata-optlist-perl (0.112-1) ...
Selecting previously unselected package libsub-exporter-perl.
Preparing to unpack .../25-libsub-exporter-perl_0.988-1_all.deb ...
Unpacking libsub-exporter-perl (0.988-1) ...
Selecting previously unselected package libconst-fast-perl.
Preparing to unpack .../26-libconst-fast-perl_0.014-1.1_all.deb ...
Unpacking libconst-fast-perl (0.014-1.1) ...
Selecting previously unselected package libcpanel-json-xs-perl:amd64.
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Unpacking libcpanel-json-xs-perl:amd64 (4.27-1+b1) ...
Selecting previously unselected package libdevel-stacktrace-perl.
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Unpacking libdevel-stacktrace-perl (2.0400-1) ...
Selecting previously unselected package libexception-class-perl.
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Unpacking libexception-class-perl (1.45-1) ...
Selecting previously unselected package libiterator-perl.
Preparing to unpack .../30-libiterator-perl_0.03+ds1-1.1_all.deb ...
Unpacking libiterator-perl (0.03+ds1-1.1) ...
Selecting previously unselected package libiterator-util-perl.
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Unpacking libiterator-util-perl (0.02+ds1-1.1) ...
Selecting previously unselected package libexporter-tiny-perl.
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Unpacking libexporter-tiny-perl (1.002002-1) ...
Selecting previously unselected package liblist-moreutils-xs-perl.
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Unpacking liblist-moreutils-xs-perl (0.430-2+b1) ...
Selecting previously unselected package liblist-moreutils-perl.
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Unpacking liblist-moreutils-perl (0.430-2) ...
Selecting previously unselected package libdata-dpath-perl.
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Unpacking libdata-dpath-perl (0.58-1) ...
Selecting previously unselected package libdata-messagepack-perl.
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Unpacking libdata-messagepack-perl (1.01-2+b1) ...
Selecting previously unselected package libnet-domain-tld-perl.
Preparing to unpack .../37-libnet-domain-tld-perl_1.75-1.1_all.deb ...
Unpacking libnet-domain-tld-perl (1.75-1.1) ...
Selecting previously unselected package libdata-validate-domain-perl.
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Unpacking libdata-validate-domain-perl (0.10-1.1) ...
Selecting previously unselected package libnet-ipv6addr-perl.
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Unpacking libnet-ipv6addr-perl (1.02-1) ...
Selecting previously unselected package libnet-netmask-perl.
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Unpacking libnet-netmask-perl (2.0001-1) ...
Selecting previously unselected package libnetaddr-ip-perl.
Preparing to unpack .../41-libnetaddr-ip-perl_4.079+dfsg-1+b6_amd64.deb ...
Unpacking libnetaddr-ip-perl (4.079+dfsg-1+b6) ...
Selecting previously unselected package libdata-validate-ip-perl.
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Unpacking libdata-validate-ip-perl (0.30-1) ...
Selecting previously unselected package libdata-validate-uri-perl.
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Unpacking libdata-validate-uri-perl (0.07-2) ...
Selecting previously unselected package libdevel-size-perl.
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Selecting previously unselected package libemail-address-xs-perl.
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Unpacking libemail-address-xs-perl (1.04-1+b4) ...
Selecting previously unselected package libipc-system-simple-perl.
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Unpacking libipc-system-simple-perl (1.30-1) ...
Selecting previously unselected package libfile-basedir-perl.
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Unpacking libfile-basedir-perl (0.09-1) ...
Selecting previously unselected package libnumber-compare-perl.
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Unpacking libnumber-compare-perl (0.03-2) ...
Selecting previously unselected package libtext-glob-perl.
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Unpacking libtext-glob-perl (0.11-2) ...
Selecting previously unselected package libfile-find-rule-perl.
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Unpacking libfile-find-rule-perl (0.34-1) ...
Selecting previously unselected package libfont-ttf-perl.
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Unpacking libfont-ttf-perl (1.06-1.1) ...
Selecting previously unselected package libhtml-html5-entities-perl.
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Selecting previously unselected package libimport-into-perl.
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Unpacking libimport-into-perl (1.002005-1) ...
Selecting previously unselected package libio-interactive-perl.
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Unpacking libio-interactive-perl (1.023-1) ...
Selecting previously unselected package libio-prompt-tiny-perl.
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Unpacking libio-prompt-tiny-perl (0.003-1) ...
Selecting previously unselected package libipc-run3-perl.
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Selecting previously unselected package libjson-maybexs-perl.
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Selecting previously unselected package liblist-compare-perl.
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Unpacking liblist-compare-perl (0.55-1) ...
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Unpacking liblist-someutils-perl (0.58-1) ...
Selecting previously unselected package liblist-utilsby-perl.
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Unpacking liblist-utilsby-perl (0.11-1) ...
Selecting previously unselected package liblzo2-2:amd64.
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Unpacking liblzo2-2:amd64 (2.10-2) ...
Selecting previously unselected package libmarkdown2:amd64.
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Unpacking libmarkdown2:amd64 (2.2.7-2) ...
Selecting previously unselected package librole-tiny-perl.
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Unpacking librole-tiny-perl (2.002004-1) ...
Selecting previously unselected package libsub-quote-perl.
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Unpacking libsub-quote-perl (2.006006-1) ...
Selecting previously unselected package libmoo-perl.
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Unpacking libmoo-perl (2.005004-3) ...
Selecting previously unselected package libstrictures-perl.
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Unpacking libstrictures-perl (2.000006-1) ...
Selecting previously unselected package libmoox-aliases-perl.
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Selecting previously unselected package libmouse-perl.
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Unpacking libmouse-perl (2.5.10-1+b2) ...
Selecting previously unselected package libpackage-stash-perl.
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Setting up libmarkdown2:amd64 (2.2.7-2) ...
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Setting up lintian (2.114.0) ...
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Not building database; man-db/auto-update is not 'true'.
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I: Lintian run was successful.

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| Post Build                                                                   |
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| Cleanup                                                                      |
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| Summary                                                                      |
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Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 297308
Build-Time: 517
Distribution: unstable
Foreign Architectures: arm64
Host Architecture: arm64
Install-Time: 37
Job: pbseqlib_5.3.5+dfsg-4
Lintian: pass
Machine Architecture: amd64
Package: pbseqlib
Package-Time: 565
Source-Version: 5.3.5+dfsg-4
Space: 297308
Status: successful
Version: 5.3.5+dfsg-4
--------------------------------------------------------------------------------
Finished at 2022-03-12T09:51:42Z
Build needed 00:09:25, 297308k disk space