sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley

+==============================================================================+
| pbseqlib 5.3.5+dfsg-4 (arm64)                Thu, 16 Mar 2023 11:27:51 +0000 |
+==============================================================================+

Package: pbseqlib
Version: 5.3.5+dfsg-4
Source Version: 5.3.5+dfsg-4
Distribution: unstable
Machine Architecture: amd64
Host Architecture: arm64
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-4e3ea3f7-cb68-4d7e-9b5b-cb3c2aff6c43' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-7NQ20p/resolver-uW7li8' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://localhost:3142/debian sid InRelease [180 kB]
Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB]
Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB]
Get:4 http://localhost:3142/debian sid/main Sources T-2023-03-16-0802.59-F-2023-03-16-0232.47.pdiff [6468 B]
Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-03-16-0802.59-F-2023-03-16-0232.47.pdiff [10.1 kB]
Get:4 http://localhost:3142/debian sid/main Sources T-2023-03-16-0802.59-F-2023-03-16-0232.47.pdiff [6468 B]
Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-03-16-0802.59-F-2023-03-16-0232.47.pdiff [10.1 kB]
Get:6 http://localhost:3142/debian sid/main arm64 Packages [9284 kB]
Fetched 9608 kB in 2s (3969 kB/s)
Reading package lists...
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0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'pbseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pbseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/pbseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 985 kB of source archives.
Get:1 http://localhost:3142/debian sid/main pbseqlib 5.3.5+dfsg-4 (dsc) [2428 B]
Get:2 http://localhost:3142/debian sid/main pbseqlib 5.3.5+dfsg-4 (tar) [973 kB]
Get:3 http://localhost:3142/debian sid/main pbseqlib 5.3.5+dfsg-4 (diff) [9548 B]
Fetched 985 kB in 0s (18.1 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pbseqlib-7NQ20p/pbseqlib-5.3.5+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-7NQ20p' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev, libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev, libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [560 B]
Fetched 1988 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
  bsdextrautils cmake cmake-data cpp-12-aarch64-linux-gnu
  cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs
  debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file
  g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-12-aarch64-linux-gnu
  gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base
  gcc-aarch64-linux-gnu gettext gettext-base googletest groff-base
  hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64
  libarchive-zip-perl libarchive13 libasan8:arm64 libasan8-arm64-cross
  libatomic1:arm64 libatomic1-arm64-cross libboost-dev:arm64
  libboost1.74-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64
  libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross
  libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl
  libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4
  libcurl4:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl
  libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libelf1
  libexpat1 libffi8:arm64 libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:arm64
  libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross
  libgfortran5:arm64 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64
  libgomp1-arm64-cross libgssapi-krb5-2:arm64 libgtest-dev:arm64
  libhdf5-103-1:arm64 libhdf5-cpp-103-1:arm64 libhdf5-dev:arm64
  libhdf5-fortran-102:arm64 libhdf5-hl-100:arm64 libhdf5-hl-cpp-100:arm64
  libhdf5-hl-fortran-100:arm64 libhogweed6:arm64 libhts-dev:arm64
  libhts3:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross
  libicu72 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross
  libjpeg-dev:arm64 libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64
  libjsoncpp25 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64
  libkrb5support0:arm64 libldap-2.5-0 libldap-2.5-0:arm64
  liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64
  liblzma5:arm64 libmagic-mgc libmagic1 libncursesw6 libnettle8:arm64
  libnghttp2-14 libnghttp2-14:arm64 libnsl-dev:arm64 libnsl2:arm64
  libp11-kit0:arm64 libpbbam-dev:arm64 libpbbam2.1.0:arm64
  libpbcopper-dev:arm64 libpbcopper2.0.0:arm64 libpipeline1 libpkgconf3
  libproc2-0 libpsl5 libpsl5:arm64 libpython3-stdlib libpython3.11-minimal
  libpython3.11-stdlib libreadline8 librhash0 librtmp1 librtmp1:arm64
  libsasl2-2 libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64
  libsqlite3-0 libssh2-1 libssh2-1:arm64 libssl-dev:arm64 libssl3:arm64
  libstdc++-12-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64
  libstdc++6-arm64-cross libsub-override-perl libsz2:arm64 libtasn1-6:arm64
  libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan2:arm64
  libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0
  libunistring2:arm64 libuv1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  libzstd1:arm64 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db
  media-types meson ninja-build pkg-config:arm64 pkgconf:arm64 pkgconf-bin
  po-debconf procps python3 python3-distutils python3-lib2to3 python3-minimal
  python3-pkg-resources python3-setuptools python3.11 python3.11-minimal
  readline-common sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc
  cmake-format elpa-cmake-mode gcc-12-locales cpp-12-doc cpp-doc dh-make
  binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-aarch64-linux-gnu
  gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip
  libboost-doc:arm64 libboost1.74-doc:arm64 libboost-atomic1.74-dev:arm64
  libboost-chrono1.74-dev:arm64 libboost-container1.74-dev:arm64
  libboost-context1.74-dev:arm64 libboost-contract1.74-dev:arm64
  libboost-coroutine1.74-dev:arm64 libboost-date-time1.74-dev:arm64
  libboost-exception1.74-dev:arm64 libboost-fiber1.74-dev:arm64
  libboost-filesystem1.74-dev:arm64 libboost-graph1.74-dev:arm64
  libboost-graph-parallel1.74-dev:arm64 libboost-iostreams1.74-dev:arm64
  libboost-locale1.74-dev:arm64 libboost-log1.74-dev:arm64
  libboost-math1.74-dev:arm64 libboost-mpi1.74-dev:arm64
  libboost-mpi-python1.74-dev:arm64 libboost-numpy1.74-dev:arm64
  libboost-program-options1.74-dev:arm64 libboost-python1.74-dev:arm64
  libboost-random1.74-dev:arm64 libboost-regex1.74-dev:arm64
  libboost-serialization1.74-dev:arm64 libboost-stacktrace1.74-dev:arm64
  libboost-system1.74-dev:arm64 libboost-test1.74-dev:arm64
  libboost-thread1.74-dev:arm64 libboost-timer1.74-dev:arm64
  libboost-type-erasure1.74-dev:arm64 libboost-wave1.74-dev:arm64
  libboost1.74-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64
  libboost-nowide1.74-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64
  libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 libcurl4-doc:arm64
  libgnutls28-dev:arm64 libidn-dev:arm64 libkrb5-dev:arm64 libldap2-dev:arm64
  librtmp-dev:arm64 libssh2-1-dev:arm64 gnutls-bin:arm64 krb5-doc:arm64
  krb5-user:arm64 libhdf5-doc:arm64 liblzma-doc:arm64 libssl-doc:arm64
  libstdc++-12-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk
  libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl
  python3-doc python3-tk python3-venv python-setuptools-doc python3.11-venv
  python3.11-doc binfmt-support readline-doc
Recommended packages:
  curl | wget | lynx ca-certificates:arm64 ca-certificates
  libarchive-cpio-perl krb5-locales:arm64 libldap-common libldap-common:arm64
  libgpm2 publicsuffix publicsuffix:arm64 libsasl2-modules
  libsasl2-modules:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl
  libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
  bsdextrautils cmake cmake-data cpp-12-aarch64-linux-gnu
  cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs
  debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file
  g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-12-aarch64-linux-gnu
  gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base
  gcc-aarch64-linux-gnu gettext gettext-base googletest groff-base
  hdf5-helpers:arm64 intltool-debian libaec-dev:arm64 libaec0:arm64
  libarchive-zip-perl libarchive13 libasan8:arm64 libasan8-arm64-cross
  libatomic1:arm64 libatomic1-arm64-cross libboost-dev:arm64
  libboost1.74-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64
  libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross
  libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl
  libcrypt-dev:arm64 libcrypt1:arm64 libcurl3-gnutls:arm64 libcurl4
  libcurl4:arm64 libcurl4-gnutls-dev:arm64 libdb5.3:arm64 libdebhelper-perl
  libdebian-dpkgcross-perl libdeflate-dev:arm64 libdeflate0:arm64 libelf1
  libexpat1 libffi8:arm64 libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:arm64
  libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross
  libgfortran5:arm64 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64
  libgomp1-arm64-cross libgssapi-krb5-2:arm64 libgtest-dev:arm64
  libhdf5-103-1:arm64 libhdf5-cpp-103-1:arm64 libhdf5-dev:arm64
  libhdf5-fortran-102:arm64 libhdf5-hl-100:arm64 libhdf5-hl-cpp-100:arm64
  libhdf5-hl-fortran-100:arm64 libhogweed6:arm64 libhts-dev:arm64
  libhts3:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross
  libicu72 libidn2-0:arm64 libio-string-perl libitm1:arm64 libitm1-arm64-cross
  libjpeg-dev:arm64 libjpeg62-turbo:arm64 libjpeg62-turbo-dev:arm64
  libjsoncpp25 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64
  libkrb5support0:arm64 libldap-2.5-0 libldap-2.5-0:arm64
  liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross liblzma-dev:arm64
  liblzma5:arm64 libmagic-mgc libmagic1 libncursesw6 libnettle8:arm64
  libnghttp2-14 libnghttp2-14:arm64 libnsl-dev:arm64 libnsl2:arm64
  libp11-kit0:arm64 libpbbam-dev:arm64 libpbbam2.1.0:arm64
  libpbcopper-dev:arm64 libpbcopper2.0.0:arm64 libpipeline1 libpkgconf3
  libproc2-0 libpsl5 libpsl5:arm64 libpython3-stdlib libpython3.11-minimal
  libpython3.11-stdlib libreadline8 librhash0 librtmp1 librtmp1:arm64
  libsasl2-2 libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64
  libsqlite3-0 libssh2-1 libssh2-1:arm64 libssl-dev:arm64 libssl3:arm64
  libstdc++-12-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64
  libstdc++6-arm64-cross libsub-override-perl libsz2:arm64 libtasn1-6:arm64
  libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan2:arm64
  libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0
  libunistring2:arm64 libuv1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  libzstd1:arm64 linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db
  media-types meson ninja-build pkg-config:arm64 pkgconf:arm64 pkgconf-bin
  po-debconf procps python3 python3-distutils python3-lib2to3 python3-minimal
  python3-pkg-resources python3-setuptools python3.11 python3.11-minimal
  readline-common sbuild-build-depends-main-dummy:arm64 sensible-utils ucf
  zlib1g:arm64 zlib1g-dev:arm64
0 upgraded, 198 newly installed, 0 to remove and 0 not upgraded.
Need to get 146 MB of archives.
After this operation, 703 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [988 B]
Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB]
Get:3 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB]
Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB]
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Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.2-1 [26.0 kB]
Get:7 http://localhost:3142/debian sid/main amd64 media-types all 10.0.0 [26.1 kB]
Get:8 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4-2 [134 kB]
Get:9 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB]
Get:10 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB]
Get:11 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.40.1-1 [838 kB]
Get:12 http://localhost:3142/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB]
Get:13 http://localhost:3142/debian sid/main amd64 python3.11 amd64 3.11.2-6 [572 kB]
Get:14 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.11.2-1 [9012 B]
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Get:18 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get:19 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
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Get:21 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get:22 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get:23 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:24 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get:25 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-5 [86.1 kB]
Get:26 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get:27 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get:28 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get:29 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get:30 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB]
Get:31 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:32 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:33 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-12 [495 kB]
Get:34 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.40-2 [3353 kB]
Get:35 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get:36 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB]
Get:37 http://localhost:3142/debian sid/main amd64 libarchive13 amd64 3.6.2-1 [343 kB]
Get:38 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB]
Get:39 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-11 [20.1 kB]
Get:40 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg-11 [59.5 kB]
Get:41 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB]
Get:42 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB]
Get:43 http://localhost:3142/debian sid/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB]
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Get:45 http://localhost:3142/debian sid/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB]
Get:46 http://localhost:3142/debian sid/main amd64 libcurl4 amd64 7.88.1-6 [385 kB]
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Get:48 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3 [134 kB]
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Get:50 http://localhost:3142/debian sid/main amd64 cmake-data all 3.25.1-1 [2026 kB]
Get:51 http://localhost:3142/debian sid/main amd64 cmake amd64 3.25.1-1 [8692 kB]
Get:52 http://localhost:3142/debian sid/main amd64 gcc-12-aarch64-linux-gnu-base amd64 12.2.0-14cross1 [37.7 kB]
Get:53 http://localhost:3142/debian sid/main amd64 cpp-12-aarch64-linux-gnu amd64 12.2.0-14cross1 [9150 kB]
Get:54 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:12.2.0-3 [3980 B]
Get:55 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB]
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Get:57 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.36-8cross1 [1005 kB]
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Get:59 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 12.2.0-14cross1 [102 kB]
Get:60 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 12.2.0-14cross1 [23.5 kB]
Get:61 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 12.2.0-14cross1 [9292 B]
Get:62 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 12.2.0-14cross1 [2097 kB]
Get:63 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 12.2.0-14cross1 [926 kB]
Get:64 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 12.2.0-14cross1 [2179 kB]
Get:65 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 12.2.0-14cross1 [514 kB]
Get:66 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 12.2.0-14cross1 [861 kB]
Get:67 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 12.2.0-14cross1 [998 kB]
Get:68 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-arm64-cross all 12.2.0-14cross1 [961 kB]
Get:69 http://localhost:3142/debian sid/main amd64 gcc-12-aarch64-linux-gnu amd64 12.2.0-14cross1 [18.0 MB]
Get:70 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:12.2.0-3 [1468 B]
Get:71 http://localhost:3142/debian sid/main amd64 linux-libc-dev-arm64-cross all 6.1.4-1cross1 [1815 kB]
Get:72 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.36-8cross1 [1424 kB]
Get:73 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-arm64-cross all 12.2.0-14cross1 [1975 kB]
Get:74 http://localhost:3142/debian sid/main amd64 g++-12-aarch64-linux-gnu amd64 12.2.0-14cross1 [10.1 MB]
Get:75 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:12.2.0-3 [1176 B]
Get:76 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB]
Get:77 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:78 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:79 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:80 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:81 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB]
Get:82 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB]
Get:83 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB]
Get:84 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB]
Get:85 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get:86 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB]
Get:87 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB]
Get:88 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB]
Get:89 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B]
Get:90 http://localhost:3142/debian sid/main amd64 d-shlibs all 0.104 [18.6 kB]
Get:91 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get:92 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB]
Get:93 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:94 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:95 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get:96 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:97 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:98 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get:99 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB]
Get:100 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-12 [1300 kB]
Get:101 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:102 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:103 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB]
Get:104 http://localhost:3142/debian sid/main arm64 gcc-12-base arm64 12.2.0-14 [37.5 kB]
Get:105 http://localhost:3142/debian sid/main amd64 googletest all 1.12.1-0.2 [506 kB]
Get:106 http://localhost:3142/debian sid/main arm64 hdf5-helpers arm64 1.10.8+repack1-1 [27.9 kB]
Get:107 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 12.2.0-14 [34.8 kB]
Get:108 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.36-8 [2310 kB]
Get:109 http://localhost:3142/debian sid/main arm64 libaec0 arm64 1.0.6-1+b1 [19.9 kB]
Get:110 http://localhost:3142/debian sid/main arm64 libsz2 arm64 1.0.6-1+b1 [7740 B]
Get:111 http://localhost:3142/debian sid/main arm64 libaec-dev arm64 1.0.6-1+b1 [18.7 kB]
Get:112 http://localhost:3142/debian sid/main arm64 libasan8 arm64 12.2.0-14 [2095 kB]
Get:113 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 12.2.0-14 [9536 B]
Get:114 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 12.2.0-14 [104 kB]
Get:115 http://localhost:3142/debian sid/main arm64 libitm1 arm64 12.2.0-14 [23.9 kB]
Get:116 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 12.2.0-14 [926 kB]
Get:117 http://localhost:3142/debian sid/main arm64 libtsan2 arm64 12.2.0-14 [2179 kB]
Get:118 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 12.2.0-14 [557 kB]
Get:119 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 12.2.0-14 [862 kB]
Get:120 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 12.2.0-14 [998 kB]
Get:121 http://localhost:3142/debian sid/main arm64 libgcc-12-dev arm64 12.2.0-14 [959 kB]
Get:122 http://localhost:3142/debian sid/main arm64 linux-libc-dev arm64 6.1.15-1 [1712 kB]
Get:123 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.33-2 [90.0 kB]
Get:124 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.33-2 [121 kB]
Get:125 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.47.0-2 [19.6 kB]
Get:126 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20.1-1 [31.5 kB]
Get:127 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20.1-1 [78.9 kB]
Get:128 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-2 [8844 B]
Get:129 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.0.8-1 [1801 kB]
Get:130 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-1 [313 kB]
Get:131 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-1 [123 kB]
Get:132 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.3+ds-1 [80.9 kB]
Get:133 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB]
Get:134 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.3+ds-1 [194 kB]
Get:135 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB]
Get:136 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.36-8 [1427 kB]
Get:137 http://localhost:3142/debian sid/main arm64 libstdc++-12-dev arm64 12.2.0-14 [2006 kB]
Get:138 http://localhost:3142/debian sid/main arm64 libboost1.74-dev arm64 1.74.0+ds1-20 [9510 kB]
Get:139 http://localhost:3142/debian sid/main arm64 libboost-dev arm64 1.74.0.3 [4548 B]
Get:140 http://localhost:3142/debian sid/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB]
Get:141 http://localhost:3142/debian sid/main arm64 libbz2-1.0 arm64 1.0.8-5+b1 [47.5 kB]
Get:142 http://localhost:3142/debian sid/main arm64 libgmp10 arm64 2:6.2.1+dfsg1-1.1 [538 kB]
Get:143 http://localhost:3142/debian sid/main arm64 libnettle8 arm64 3.8.1-2 [294 kB]
Get:144 http://localhost:3142/debian sid/main arm64 libhogweed6 arm64 3.8.1-2 [324 kB]
Get:145 http://localhost:3142/debian sid/main arm64 libunistring2 arm64 1.0-2 [423 kB]
Get:146 http://localhost:3142/debian sid/main arm64 libidn2-0 arm64 2.3.3-1+b1 [122 kB]
Get:147 http://localhost:3142/debian sid/main arm64 libffi8 arm64 3.4.4-1 [20.5 kB]
Get:148 http://localhost:3142/debian sid/main arm64 libp11-kit0 arm64 0.24.1-2 [327 kB]
Get:149 http://localhost:3142/debian sid/main arm64 libtasn1-6 arm64 4.19.0-2 [54.2 kB]
Get:150 http://localhost:3142/debian sid/main arm64 libgnutls30 arm64 3.7.9-1 [1313 kB]
Get:151 http://localhost:3142/debian sid/main arm64 libdb5.3 arm64 5.3.28+dfsg2-1 [626 kB]
Get:152 http://localhost:3142/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-11 [20.6 kB]
Get:153 http://localhost:3142/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg-11 [57.8 kB]
Get:154 http://localhost:3142/debian sid/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB]
Get:155 http://localhost:3142/debian sid/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB]
Get:156 http://localhost:3142/debian sid/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB]
Get:157 http://localhost:3142/debian sid/main arm64 zlib1g arm64 1:1.2.13.dfsg-1 [82.7 kB]
Get:158 http://localhost:3142/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB]
Get:159 http://localhost:3142/debian sid/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB]
Get:160 http://localhost:3142/debian sid/main arm64 libzstd1 arm64 1.5.4+dfsg2-4 [250 kB]
Get:161 http://localhost:3142/debian sid/main arm64 libcurl3-gnutls arm64 7.88.1-6 [355 kB]
Get:162 http://localhost:3142/debian sid/main arm64 libcurl4 arm64 7.88.1-6 [360 kB]
Get:163 http://localhost:3142/debian sid/main arm64 libcurl4-gnutls-dev arm64 7.88.1-6 [465 kB]
Get:164 http://localhost:3142/debian sid/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB]
Get:165 http://localhost:3142/debian sid/main arm64 libdeflate-dev arm64 1.14-1 [50.0 kB]
Get:166 http://localhost:3142/debian sid/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB]
Get:167 http://localhost:3142/debian sid/main arm64 libgtest-dev arm64 1.12.1-0.2 [231 kB]
Get:168 http://localhost:3142/debian sid/main arm64 libhdf5-103-1 arm64 1.10.8+repack1-1 [1037 kB]
Get:169 http://localhost:3142/debian sid/main arm64 libhdf5-cpp-103-1 arm64 1.10.8+repack1-1 [119 kB]
Get:170 http://localhost:3142/debian sid/main arm64 libhdf5-fortran-102 arm64 1.10.8+repack1-1 [91.1 kB]
Get:171 http://localhost:3142/debian sid/main arm64 libhdf5-hl-100 arm64 1.10.8+repack1-1 [64.0 kB]
Get:172 http://localhost:3142/debian sid/main arm64 libhdf5-hl-fortran-100 arm64 1.10.8+repack1-1 [42.7 kB]
Get:173 http://localhost:3142/debian sid/main arm64 libhdf5-hl-cpp-100 arm64 1.10.8+repack1-1 [25.4 kB]
Get:174 http://localhost:3142/debian sid/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB]
Get:175 http://localhost:3142/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB]
Get:176 http://localhost:3142/debian sid/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-2 [292 kB]
Get:177 http://localhost:3142/debian sid/main arm64 libjpeg-dev arm64 1:2.1.5-2 [71.8 kB]
Get:178 http://localhost:3142/debian sid/main arm64 libssl-dev arm64 3.0.8-1 [2296 kB]
Get:179 http://localhost:3142/debian sid/main arm64 libhdf5-dev arm64 1.10.8+repack1-1 [2654 kB]
Get:180 http://localhost:3142/debian sid/main arm64 libhtscodecs2 arm64 1.3.0-4 [70.5 kB]
Get:181 http://localhost:3142/debian sid/main arm64 liblzma5 arm64 5.4.1-0.2 [199 kB]
Get:182 http://localhost:3142/debian sid/main arm64 libhts3 arm64 1.16+ds-3 [392 kB]
Get:183 http://localhost:3142/debian sid/main arm64 liblzma-dev arm64 5.4.1-0.2 [255 kB]
Get:184 http://localhost:3142/debian sid/main arm64 libhts-dev arm64 1.16+ds-3 [1525 kB]
Get:185 http://localhost:3142/debian sid/main arm64 libpbcopper2.0.0 arm64 2.0.0+dfsg-2 [510 kB]
Get:186 http://localhost:3142/debian sid/main arm64 libpbbam2.1.0 arm64 2.1.0+dfsg-2 [665 kB]
Get:187 http://localhost:3142/debian sid/main arm64 libpbbam-dev arm64 2.1.0+dfsg-2 [88.8 kB]
Get:188 http://localhost:3142/debian sid/main arm64 libpbcopper-dev arm64 2.0.0+dfsg-2 [846 kB]
Get:189 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB]
Get:190 http://localhost:3142/debian sid/main amd64 ninja-build amd64 1.11.1-1 [136 kB]
Get:191 http://localhost:3142/debian sid/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB]
Get:192 http://localhost:3142/debian sid/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get:193 http://localhost:3142/debian sid/main amd64 python3-distutils all 3.11.2-2 [131 kB]
Get:194 http://localhost:3142/debian sid/main amd64 python3-setuptools all 66.1.1-1 [521 kB]
Get:195 http://localhost:3142/debian sid/main amd64 meson all 1.0.1-5 [548 kB]
Get:196 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB]
Get:197 http://localhost:3142/debian sid/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB]
Get:198 http://localhost:3142/debian sid/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 146 MB in 1s (176 MB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 15261 files and directories currently installed.)
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Unpacking liblocale-gettext-perl (1.07-5) ...
Selecting previously unselected package libpython3.11-minimal:amd64.
Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ...
Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ...
Selecting previously unselected package libexpat1:amd64.
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Unpacking libexpat1:amd64 (2.5.0-1) ...
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Unpacking python3.11-minimal (3.11.2-6) ...
Setting up libpython3.11-minimal:amd64 (3.11.2-6) ...
Setting up libexpat1:amd64 (2.5.0-1) ...
Setting up python3.11-minimal (3.11.2-6) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 15591 files and directories currently installed.)
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Unpacking python3-minimal (3.11.2-1) ...
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Unpacking libncursesw6:amd64 (6.4-2) ...
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Unpacking readline-common (8.2-1.3) ...
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Unpacking libreadline8:amd64 (8.2-1.3) ...
Selecting previously unselected package libsqlite3-0:amd64.
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Unpacking libsqlite3-0:amd64 (3.40.1-1) ...
Selecting previously unselected package libpython3.11-stdlib:amd64.
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Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ...
Selecting previously unselected package python3.11.
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Unpacking python3.11 (3.11.2-6) ...
Selecting previously unselected package libpython3-stdlib:amd64.
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Unpacking libpython3-stdlib:amd64 (3.11.2-1) ...
Setting up python3-minimal (3.11.2-1) ...
Selecting previously unselected package python3.
(Reading database ... 16040 files and directories currently installed.)
Preparing to unpack .../000-python3_3.11.2-1_amd64.deb ...
Unpacking python3 (3.11.2-1) ...
Selecting previously unselected package libproc2-0:amd64.
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Unpacking libproc2-0:amd64 (2:4.0.3-1) ...
Selecting previously unselected package procps.
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Unpacking procps (2:4.0.3-1) ...
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Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
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Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
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Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
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Unpacking file (1:5.44-3) ...
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Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
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Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
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Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
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Unpacking bsdextrautils (2.38.1-5) ...
Selecting previously unselected package libpipeline1:amd64.
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Unpacking libpipeline1:amd64 (1.5.7-1) ...
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Unpacking man-db (2.11.2-2) ...
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Moving old data out of the way
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Selecting previously unselected package m4.
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Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
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Unpacking autoconf (2.71-3) ...
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Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
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Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
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Unpacking autopoint (0.21-12) ...
Selecting previously unselected package binutils-aarch64-linux-gnu.
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Unpacking binutils-aarch64-linux-gnu (2.40-2) ...
Selecting previously unselected package libicu72:amd64.
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Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libxml2:amd64.
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Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b3) ...
Selecting previously unselected package libarchive13:amd64.
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Unpacking libarchive13:amd64 (3.6.2-1) ...
Selecting previously unselected package libbrotli1:amd64.
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Unpacking libbrotli1:amd64 (1.0.9-2+b6) ...
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Setting up libhdf5-cpp-103-1:arm64 (1.10.8+repack1-1) ...
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Setting up libhdf5-hl-cpp-100:arm64 (1.10.8+repack1-1) ...
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Setting up libhdf5-hl-fortran-100:arm64 (1.10.8+repack1-1) ...
Setting up libboost1.74-dev:arm64 (1.74.0+ds1-20) ...
Setting up libjpeg-dev:arm64 (1:2.1.5-2) ...
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Setting up libhdf5-dev:arm64 (1.10.8+repack1-1) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libboost-dev:arm64 (1.74.0.3) ...
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Processing triggers for libc-bin (2.36-8) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) amd64 (x86_64)
Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.21 g++-11_11.3.0-12 g++-12_12.2.0-14 gcc-11_11.3.0-12 gcc-12_12.2.0-14 libc6-dev_2.36-8 libstdc++-11-dev_11.3.0-12 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-arm64-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-arm64-cross_12.2.0-14cross1 linux-libc-dev_6.1.15-1
Package versions: adduser_3.131 apt_2.6.0 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.4 base-passwd_3.6.1 bash_5.2.15-2+b1 binutils_2.40-2 binutils-aarch64-linux-gnu_2.40-2 binutils-common_2.40-2 binutils-x86-64-linux-gnu_2.40-2 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bzip2_1.0.8-5+b1 cmake_3.25.1-1 cmake-data_3.25.1-1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-11_11.3.0-12 cpp-12_12.2.0-14 cpp-12-aarch64-linux-gnu_12.2.0-14cross1 cpp-aarch64-linux-gnu_4:12.2.0-3 cross-config_2.6.20 crossbuild-essential-arm64_12.9 d-shlibs_0.104 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2021.1.1 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.21 dpkg-cross_2.6.20 dpkg-dev_1.21.21 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.31-1.1 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3 g++-11_11.3.0-12 g++-12_12.2.0-14 g++-12-aarch64-linux-gnu_12.2.0-14cross1 g++-aarch64-linux-gnu_4:12.2.0-3 gcc_4:12.2.0-3 gcc-11_11.3.0-12 gcc-11-base_11.3.0-12 gcc-12_12.2.0-14 gcc-12-aarch64-linux-gnu_12.2.0-14cross1 gcc-12-aarch64-linux-gnu-base_12.2.0-14cross1 gcc-12-base_12.2.0-14 gcc-12-cross-base_12.2.0-14cross1 gcc-9-base_9.5.0-3 gcc-aarch64-linux-gnu_4:12.2.0-3 gettext_0.21-12 gettext-base_0.21-12 googletest_1.12.1-0.2 gpgv_2.2.40-1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hdf5-helpers_1.10.8+repack1-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libaec-dev_1.0.6-1+b1 libaec0_1.0.6-1+b1 libapt-pkg6.0_2.6.0 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1 libasan6_11.3.0-12 libasan8_12.2.0-14 libasan8-arm64-cross_12.2.0-14cross1 libatomic1_12.2.0-14 libatomic1-arm64-cross_12.2.0-14cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2 libblkid1_2.38.1-5 libboost-dev_1.74.0.3 libboost1.74-dev_1.74.0+ds1-20 libbrotli1_1.0.9-2+b6 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-8 libc-dev-bin_2.36-8 libc6_2.36-8 libc6-arm64-cross_2.36-8cross1 libc6-dev_2.36-8 libc6-dev-arm64-cross_2.36-8cross1 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-3 libcc1-0_12.2.0-14 libcom-err2_1.47.0-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2 libctf0_2.40-2 libcurl3-gnutls_7.88.1-6 libcurl4_7.88.1-6 libcurl4-gnutls-dev_7.88.1-6 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.267 libdebhelper-perl_13.11.4 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdpkg-perl_1.21.21 libelf1_0.188-2.1 libexpat1_2.5.0-1 libext2fs2_1.47.0-2 libfakeroot_1.31-1.1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-12 libgcc-12-dev_12.2.0-14 libgcc-12-dev-arm64-cross_12.2.0-14cross1 libgcc-s1_12.2.0-14 libgcc-s1-arm64-cross_12.2.0-14cross1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-1 libgomp1_12.2.0-14 libgomp1-arm64-cross_12.2.0-14cross1 libgpg-error0_1.46-1 libgprofng0_2.40-2 libgssapi-krb5-2_1.20.1-1 libgtest-dev_1.12.1-0.2 libhdf5-103-1_1.10.8+repack1-1 libhdf5-cpp-103-1_1.10.8+repack1-1 libhdf5-dev_1.10.8+repack1-1 libhdf5-fortran-102_1.10.8+repack1-1 libhdf5-hl-100_1.10.8+repack1-1 libhdf5-hl-cpp-100_1.10.8+repack1-1 libhdf5-hl-fortran-100_1.10.8+repack1-1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libhwasan0_12.2.0-14 libhwasan0-arm64-cross_12.2.0-14cross1 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-4 libisl23_0.25-1 libitm1_12.2.0-14 libitm1-arm64-cross_12.2.0-14cross1 libjansson4_2.14-2 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libjsoncpp25_1.9.5-4 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libldap-2.5-0_2.5.13+dfsg-5 liblocale-gettext-perl_1.07-5 liblsan0_12.2.0-14 liblsan0-arm64-cross_12.2.0-14cross1 liblz4-1_1.9.4-1 liblzma-dev_5.4.1-0.2 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4-2 libnettle8_3.8.1-2 libnghttp2-14_1.52.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpbbam-dev_2.1.0+dfsg-2 libpbbam2.1.0_2.1.0+dfsg-2 libpbcopper-dev_2.0.0+dfsg-2 libpbcopper2.0.0_2.0.0+dfsg-2 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libproc2-0_2:4.0.3-1 libpsl5_0.21.2-1 libpython3-stdlib_3.11.2-1 libpython3.11-minimal_3.11.2-6 libpython3.11-stdlib_3.11.2-6 libquadmath0_12.2.0-14 libreadline8_8.2-1.3 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-11 libsasl2-modules-db_2.1.28+dfsg-11 libseccomp2_2.5.4-1+b3 libselinux1_3.4-1+b5 libsemanage-common_3.4-1 libsemanage2_3.4-1+b5 libsepol2_3.4-2 libsmartcols1_2.38.1-5 libsqlite3-0_3.40.1-1 libss2_1.47.0-2 libssh2-1_1.10.0-3+b1 libssl-dev_3.0.8-1 libssl3_3.0.8-1 libstdc++-11-dev_11.3.0-12 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-arm64-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-arm64-cross_12.2.0-14cross1 libsub-override-perl_0.09-4 libsystemd0_252.6-1 libsz2_1.0.6-1+b1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan0_11.3.0-12 libtsan2_12.2.0-14 libtsan2-arm64-cross_12.2.0-14cross1 libubsan1_12.2.0-14 libubsan1-arm64-cross_12.2.0-14cross1 libuchardet0_0.0.7-1 libudev1_252.6-1 libunistring2_1.0-2 libuuid1_2.38.1-5 libuv1_1.44.2-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.1+b3 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.4+dfsg2-4 linux-libc-dev_6.1.15-1 linux-libc-dev-arm64-cross_6.1.4-1cross1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20200120-3.1 media-types_10.0.0 meson_1.0.1-5 mount_2.38.1-5 ncurses-base_6.4-2 ncurses-bin_6.4-2 ninja-build_1.11.1-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-7 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 procps_2:4.0.3-1 python3_3.11.2-1 python3-distutils_3.11.2-2 python3-lib2to3_3.11.2-2 python3-minimal_3.11.2-1 python3-pkg-resources_66.1.1-1 python3-setuptools_66.1.1-1 python3.11_3.11.2-6 python3.11-minimal_3.11.2-6 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sysvinit-utils_3.06-2 tar_1.34+dfsg-1.1 tzdata_2022g-7 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.38.1-5 util-linux-extra_2.38.1-5 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: pbseqlib
Binary: libblasr-dev, libblasr5.3.5, libpbseq, libpbseq-dev, libpbdata-dev, libpbihdf-dev
Architecture: any
Version: 5.3.5+dfsg-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/PacificBiosciences/blasr_libcpp
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib
Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git
Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev, libpbcopper-dev, libhts-dev
Package-List:
 libblasr-dev deb libdevel optional arch=any
 libblasr5.3.5 deb libs optional arch=any
 libpbdata-dev deb libdevel optional arch=any
 libpbihdf-dev deb libdevel optional arch=any
 libpbseq deb science optional arch=any
 libpbseq-dev deb libdevel optional arch=any
Checksums-Sha1:
 52e008afcd7a07d4df0a18e2299c8b8e7c480e91 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz
 e040d19184b3ba0f291b442cc6715efae164a9e5 9548 pbseqlib_5.3.5+dfsg-4.debian.tar.xz
Checksums-Sha256:
 81afecd5d7ccb3cd70ed42cd8afa64876fde4c0deee89e1112c7f3b3d6ee8c49 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz
 8162f46328b77a4a0fefcef112e25e6f20b6bb5397d2318a076cb07f8fada9db 9548 pbseqlib_5.3.5+dfsg-4.debian.tar.xz
Files:
 53cbc19d8c807640dafbd04fcc47f86e 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz
 d6a4409c79e77d8c240fcc2949af9505 9548 pbseqlib_5.3.5+dfsg-4.debian.tar.xz

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gpgv: Signature made Tue Mar  8 10:52:24 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./pbseqlib_5.3.5+dfsg-4.dsc: no acceptable signature found
dpkg-source: info: extracting pbseqlib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-1.10.1-support.patch
dpkg-source: info: applying hdf5-1.10.0-support.patch
dpkg-source: info: applying meson.patch
dpkg-source: info: applying static+shared_lib.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-4e3ea3f7-cb68-4d7e-9b5b-cb3c2aff6c43
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package pbseqlib
dpkg-buildpackage: info: source version 5.3.5+dfsg-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
find -name defines.mk -delete
rm -f pbdata/libconfig.h
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu --cross-file /<<BUILDDIR>>/pbseqlib-5.3.5\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf
DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
The Meson build system
Version: 1.0.1
Source dir: /<<PKGBUILDDIR>>
Build dir: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu
Build type: cross build
Project name: libblasr
Project version: 5.3.5
C++ compiler for the host machine: /usr/bin/aarch64-linux-gnu-g++ (gcc 12.2.0 "aarch64-linux-gnu-g++ (Debian 12.2.0-14) 12.2.0")
C++ linker for the host machine: /usr/bin/aarch64-linux-gnu-g++ ld.bfd 2.40
C++ compiler for the build machine: c++ (gcc 12.2.0 "c++ (Debian 12.2.0-14) 12.2.0")
C++ linker for the build machine: c++ ld.bfd 2.40
Build machine cpu family: x86_64
Build machine cpu: x86_64
Host machine cpu family: aarch64
Host machine cpu: arm64
Target machine cpu family: aarch64
Target machine cpu: arm64
Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES 
Compiler for C++ supports arguments -Wno-unused-variable: YES 
Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES 
Found pkg-config: /usr/bin/aarch64-linux-gnu-pkg-config (1.8.1)
Run-time dependency Boost found: YES 1.74.0 (/usr/include)
Run-time dependency pbbam found: YES 2.1.0
Run-time dependency zlib found: YES 1.2.13
Run-time dependency htslib found: YES 1.16
Library rt found: YES
Run-time dependency HDF5 for cpp found: YES 1.10.8
Configuring LibBlasrConfig.h using configuration
Program tools/check-formatting found: YES (/<<PKGBUILDDIR>>/tools/check-formatting)
Run-time dependency GTest found: YES 1.12.1
Build targets in project: 3
NOTICE: Future-deprecated features used:
 * 0.56.0: {'meson.build_root', 'meson.source_root'}

libblasr 5.3.5

  User defined options
    Cross files  : /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/meson-cross-file.conf
    buildtype    : plain
    libdir       : lib/aarch64-linux-gnu
    localstatedir: /var
    prefix       : /usr
    sysconfdir   : /etc
    wrap_mode    : nodownload

Found ninja-1.11.1 at /usr/bin/ninja
   dh_auto_build -a
	cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v
[1/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -c ../hdf/BufferedHDF2DArray.cpp
[2/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -c ../hdf/BufferedHDFArray.cpp
[3/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -MF libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o.d -o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -c ../hdf/DatasetCollection.cpp
[4/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -c ../hdf/HDFAlnGroupGroup.cpp
[5/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -c ../hdf/HDFAlnInfoGroup.cpp
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAlnInfoGroup.cpp:44:23:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[6/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -c ../hdf/HDFAtom.cpp
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:9:92: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
    9 |     attribute = object.createAttribute(atomName.c_str(), strType, H5::DataSpace(H5S_SCALAR));
      |                                                                                            ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const std::string&, H5::DataSpace&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:20:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   20 | DEFINE_TYPED_CREATE_ATOM(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const std::string&, H5::DataSpace&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:21:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   21 | DEFINE_TYPED_CREATE_ATOM(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const std::string&, H5::DataSpace&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:22:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   22 | DEFINE_TYPED_CREATE_ATOM(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const std::string&, H5::DataSpace&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:23:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   23 | DEFINE_TYPED_CREATE_ATOM(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const std::string&, H5::DataSpace&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:24:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   24 | DEFINE_TYPED_CREATE_ATOM(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const std::string&, H5::DataSpace&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:25:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   25 | DEFINE_TYPED_CREATE_ATOM(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const std::string&, H5::DataSpace&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:26:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   26 | DEFINE_TYPED_CREATE_ATOM(uint64_t, H5::PredType::STD_I64LE)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const std::string&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, std::vector<int>&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[7/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -c ../hdf/HDFAttributable.cpp
[8/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -c ../hdf/HDFBaseCallsWriter.cpp
In file included from ../hdf/HDFBaseCallsWriter.hpp:11,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[9/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -c ../hdf/HDFBaxWriter.cpp
[10/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -c ../hdf/HDFCmpExperimentGroup.cpp
[11/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -c ../hdf/HDFCmpSupportedFields.cpp
[12/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFData.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -c ../hdf/HDFData.cpp
[13/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -c ../hdf/HDFFile.cpp
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:34:75: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy]
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:48,
                 from ../hdf/HDFFile.hpp:8,
                 from ../hdf/HDFFile.cpp:1:
/usr/include/hdf5/serial/H5File.h:105:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’
  105 |     H5File(const H5File &original);
      |     ^~~~~~
/usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’:
/usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   25 | class H5_DLLCPP H5File : public Group {
      |                 ^~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:47:
/usr/include/hdf5/serial/H5Group.h:63:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   63 |     Group(const Group &original);
      |     ^~~~~
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:34:75: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
[14/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -c ../hdf/HDFGroup.cpp
../hdf/HDFGroup.cpp: In member function ‘int HDFGroup::Initialize(H5::Group&, std::string)’:
../hdf/HDFGroup.cpp:18:47: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   18 |         group = fg.openGroup(groupName.c_str());
      |                                               ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:47,
                 from ../hdf/HDFGroup.hpp:9,
                 from ../hdf/HDFGroup.cpp:1:
/usr/include/hdf5/serial/H5Group.h:63:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   63 |     Group(const Group &original);
      |     ^~~~~
[15/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -c ../hdf/HDFNewBasReader.cpp
[16/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -c ../hdf/HDFPulseCallsWriter.cpp
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[17/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -c ../hdf/HDFPulseDataFile.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[18/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -c ../hdf/HDFPulseH5Writer.cpp
[19/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -c ../hdf/HDFPulseWriter.cpp
[20/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -c ../hdf/HDFRegionsWriter.cpp
../hdf/HDFRegionsWriter.cpp: In member function ‘bool HDFRegionsWriter::Write(const std::vector<RegionAnnotation>&)’:
../hdf/HDFRegionsWriter.cpp:44:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   44 |     for (auto annotation : annotations)
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFWriterBase.hpp:17,
                 from ../hdf/HDFRegionsWriter.hpp:13,
                 from ../hdf/HDFRegionsWriter.cpp:3:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
[21/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -c ../hdf/HDFRegionTableReader.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../hdf/HDFRegionTableReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:45:26:   required from ‘int HDFAtom<T>::Initialize(HDFData&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFRegionTableReader.cpp:31:31:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[22/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -c ../hdf/HDFScanDataReader.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:26:33:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:29:33:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:33:39:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[23/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -c ../hdf/HDFScanDataWriter.cpp
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[24/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -c ../hdf/HDFUtils.cpp
In file included from /usr/aarch64-linux-gnu/include/c++/12/cassert:44,
                 from ../pbdata/reads/RegionTypeMap.hpp:7,
                 from ../pbdata/reads/RegionAnnotation.hpp:17,
                 from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFBasReader.hpp:21,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFBasReader.hpp: In instantiation of ‘void T_HDFBasReader<T_Sequence>::GetMinMaxHoleNumber(UInt&, UInt&) [with T_Sequence = FASTASequence; UInt = unsigned int]’:
../hdf/HDFUtils.cpp:41:38:   required from here
../hdf/HDFBasReader.hpp:1233:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
 1233 |         assert(nReads >= 0);
      |                ~~~~~~~^~~~
In file included from ../hdf/HDFBasReader.hpp:14:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = FASTASequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFUtils.cpp:39:29:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[25/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -c ../hdf/HDFWriterBase.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFWriterBase.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFWriterBase.cpp:49:29:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFWriterBase.hpp:11:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[26/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -c ../hdf/HDFZMWMetricsWriter.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWMetricsWriter.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.hpp:6:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[27/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -c ../hdf/HDFZMWReader.cpp
[28/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -c ../hdf/HDFZMWWriter.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWWriter.hpp:12,
                 from ../hdf/HDFZMWWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWWriter.hpp:10:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[29/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -c ../alignment/algorithms/alignment/sdp/SDPFragment.cpp
[30/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -c ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/12/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:1281:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/12/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/12/string:41,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:4:
/usr/aarch64-linux-gnu/include/c++/12/bits/new_allocator.h:175:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  175 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[31/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -c ../alignment/algorithms/alignment/AlignmentUtils.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/12/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:1281:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/12/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/12/string:41,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:4:
/usr/aarch64-linux-gnu/include/c++/12/bits/new_allocator.h:175:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  175 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[32/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -c ../alignment/algorithms/alignment/BaseScoreFunction.cpp
[33/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -c ../alignment/algorithms/alignment/ExtendAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/12/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:1281:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/12/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/12/vector:61,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:6:
/usr/aarch64-linux-gnu/include/c++/12/bits/new_allocator.h:175:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  175 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[34/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -c ../alignment/algorithms/alignment/GuidedAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/12/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:1281:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/12/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/12/string:41,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/locale_classes.h:40,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/ios_base.h:41,
                 from /usr/aarch64-linux-gnu/include/c++/12/ios:42,
                 from /usr/aarch64-linux-gnu/include/c++/12/ostream:38,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:6:
/usr/aarch64-linux-gnu/include/c++/12/bits/new_allocator.h:175:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  175 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[35/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -c ../alignment/algorithms/alignment/IDSScoreFunction.cpp
[36/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -c ../alignment/algorithms/alignment/KBandAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/12/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:1281:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/12/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/12/vector:61,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:7:
/usr/aarch64-linux-gnu/include/c++/12/bits/new_allocator.h:175:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  175 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[37/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -c ../alignment/algorithms/alignment/QualityValueScoreFunction.cpp
[38/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -c ../alignment/algorithms/alignment/ScoreMatrices.cpp
[39/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -c ../alignment/algorithms/alignment/StringToScoreMatrix.cpp
[40/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -c ../alignment/algorithms/anchoring/BWTSearch.cpp
[41/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -c ../alignment/algorithms/anchoring/ClusterProbability.cpp
[42/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o -c ../alignment/algorithms/anchoring/Coordinate.cpp
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../alignment/datastructures/alignment/Alignment.cpp: In member function ‘void blasr::Alignment::CopyStats(blasr::Alignment&)’:
../alignment/datastructures/alignment/Alignment.cpp:35:47: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   35 |     AlignmentStats::CopyStats((AlignmentStats)rhs);
      |                                               ^~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/datastructures/alignment/Alignment.cpp:2:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
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[63/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -c ../alignment/files/CCSIterator.cpp
[64/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -c ../alignment/files/FragmentCCSIterator.cpp
[65/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -c ../alignment/files/ReaderAgglomerate.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../alignment/files/ReaderAgglomerate.cpp:250:47:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[66/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -c ../alignment/format/CompareSequencesPrinter.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/aarch64-linux-gnu/include/c++/12/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:1281:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/12/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/12/string:41,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/locale_classes.h:40,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/ios_base.h:41,
                 from /usr/aarch64-linux-gnu/include/c++/12/ios:42,
                 from /usr/aarch64-linux-gnu/include/c++/12/istream:38,
                 from /usr/aarch64-linux-gnu/include/c++/12/fstream:38,
                 from ../alignment/format/CompareSequencesPrinter.hpp:4:
/usr/aarch64-linux-gnu/include/c++/12/bits/new_allocator.h:175:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  175 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[67/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -c ../alignment/format/IntervalPrinter.cpp
[68/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -c ../alignment/format/SAMHeaderPrinter.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[69/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o -c ../alignment/format/SAMPrinter.cpp
[70/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o -c ../alignment/format/SummaryPrinter.cpp
[71/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -MF libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -c ../alignment/query/PbiFilterZmwGroupQuery.cpp
[72/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o -MF libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o -c ../alignment/query/SequentialZmwGroupQuery.cpp
[73/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o -MF libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o.d -o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o -c ../alignment/qvs/QualityValueProfile.cpp
[74/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o -c ../alignment/simulator/ContextSample.cpp
[75/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o -c ../alignment/simulator/ContextSet.cpp
[76/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o -c ../alignment/simulator/LengthHistogram.cpp
In file included from /usr/aarch64-linux-gnu/include/c++/12/cassert:44,
                 from ../alignment/statistics/StatUtils.hpp:5,
                 from ../alignment/simulator/CDFMap.hpp:8,
                 from ../alignment/simulator/LengthHistogram.hpp:8,
                 from ../alignment/simulator/LengthHistogram.cpp:1:
../alignment/simulator/CDFMap.hpp: In instantiation of ‘int CDFMap<T_Data>::SelectRandomValue(T_Data&) [with T_Data = int]’:
../alignment/simulator/LengthHistogram.cpp:27:87:   required from here
../alignment/simulator/CDFMap.hpp:37:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
   37 |     assert(cdf.size() >= 0);
      |            ~~~~~~~~~~~^~~~
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[103/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -c ../pbdata/reads/PulseFile.cpp
[104/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -c ../pbdata/reads/ReadType.cpp
[105/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -c ../pbdata/reads/RegionAnnotation.cpp
[106/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -c ../pbdata/reads/RegionAnnotations.cpp
../pbdata/reads/RegionAnnotations.cpp: In constructor ‘RegionAnnotations::RegionAnnotations(UInt, const std::vector<RegionAnnotation>&, const std::vector<T_RegionType>&)’:
../pbdata/reads/RegionAnnotations.cpp:14:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   14 |     for (auto annotation : annotations) {
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<RegionAnnotation> RegionAnnotations::RegionAnnotationsOfType(RegionType) const’:
../pbdata/reads/RegionAnnotations.cpp:37:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   37 |         for (auto ra : table_)
      |                        ^~~~~~
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘RegionAnnotation RegionAnnotations::TheHQRegion() const’:
../pbdata/reads/RegionAnnotations.cpp:65:22: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   65 |         return hqs_[0];
      |                      ^
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::AdapterIntervals() const’:
../pbdata/reads/RegionAnnotations.cpp:85:34: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   85 |     for (auto adapter : Adapters()) {
      |                                  ^
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::SubreadIntervals(DNALength, bool, bool) const’:
../pbdata/reads/RegionAnnotations.cpp:103:42: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  103 |             for (auto adapter : Adapters()) {
      |                                          ^
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp:122:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  122 |     for (auto insert : inserts) {
      |                        ^~~~~~~
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
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[110/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -c ../pbdata/reads/ZMWGroupEntry.cpp
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[121/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -c ../pbdata/utils/SMRTReadUtils.cpp
[122/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o -c ../pbdata/utils/SMRTTitle.cpp
[123/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -c ../pbdata/utils/TimeUtils.cpp
[124/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -c ../pbdata/BlasrFASTAReader.cpp
In file included from ../pbdata/FASTAReader.hpp:7,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
../pbdata/FASTASequence.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = FASTASequence; _Args = {FASTASequence}; _Tp = FASTASequence]’:
/usr/aarch64-linux-gnu/include/c++/12/bits/alloc_traits.h:516:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = FASTASequence; _Args = {FASTASequence}; _Tp = FASTASequence; allocator_type = std::allocator<FASTASequence>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_uninitialized.h:1064:26:   required from ‘void std::__relocate_object_a(_Tp*, _Up*, _Allocator&) [with _Tp = FASTASequence; _Up = FASTASequence; _Allocator = allocator<FASTASequence>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_uninitialized.h:1092:26:   required from ‘_ForwardIterator std::__relocate_a_1(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = allocator<FASTASequence>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_uninitialized.h:1133:33:   required from ‘_ForwardIterator std::__relocate_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = allocator<FASTASequence>]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:504:26:   required from ‘static std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_S_relocate(pointer, pointer, pointer, _Tp_alloc_type&) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; pointer = FASTASequence*; _Tp_alloc_type = std::vector<FASTASequence>::_Tp_alloc_type]’
/usr/aarch64-linux-gnu/include/c++/12/bits/vector.tcc:663:16:   required from ‘void std::vector<_Tp, _Alloc>::_M_default_append(size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; size_type = long unsigned int]’
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:1011:4:   required from ‘void std::vector<_Tp, _Alloc>::resize(size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; size_type = long unsigned int]’
../pbdata/BlasrFASTAReader.cpp:441:21:   required from here
../pbdata/FASTASequence.hpp:19:7: warning: implicitly-declared ‘constexpr DNASequence::DNASequence(const DNASequence&)’ is deprecated [-Wdeprecated-copy]
   19 | class FASTASequence : public DNASequence
      |       ^~~~~~~~~~~~~
In file included from ../pbdata/FASTASequence.hpp:13:
../pbdata/DNASequence.hpp:51:18: note: because ‘DNASequence’ has user-provided ‘DNASequence& DNASequence::operator=(const DNASequence&)’
   51 |     DNASequence &operator=(const DNASequence &rhs);
      |                  ^~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/12/aarch64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/aarch64-linux-gnu/include/c++/12/bits/allocator.h:46,
                 from /usr/aarch64-linux-gnu/include/c++/12/string:41,
                 from ../pbdata/FASTAReader.hpp:5:
/usr/aarch64-linux-gnu/include/c++/12/bits/new_allocator.h:175:11: note: synthesized method ‘constexpr FASTASequence::FASTASequence(const FASTASequence&)’ first required here
  175 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[125/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o -c ../pbdata/BlasrFASTQReader.cpp
[126/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o -c ../pbdata/CCSSequence.cpp
[127/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o -MF libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o -c ../pbdata/ChangeListID.cpp
[128/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -MF libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -c ../pbdata/CommandLineParser.cpp
[129/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -c ../pbdata/DNASequence.cpp
[130/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -c ../pbdata/FASTASequence.cpp
[131/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -c ../pbdata/FASTQSequence.cpp
[132/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -c ../pbdata/GFFFile.cpp
[133/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -c ../pbdata/MD5Utils.cpp
[134/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -MF libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -c ../pbdata/NucConversion.cpp
[135/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -c ../pbdata/PackedDNASequence.cpp
[136/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -MF libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -c ../pbdata/ReverseCompressIndex.cpp
[137/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -c ../pbdata/SMRTSequence.cpp
../pbdata/SMRTSequence.cpp: In member function ‘void SMRTSequence::MadeFromSubreadsAsPolymerase(const std::vector<SMRTSequence>&)’:
../pbdata/SMRTSequence.cpp:354:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  354 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
../pbdata/SMRTSequence.cpp:379:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  379 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
[138/187] /usr/bin/aarch64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -c ../pbdata/StringUtils.cpp
[139/187] /usr/bin/aarch64-linux-gnu-g++  -o libblasr.so.5.3.5 libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libblasr.so.5.3.5 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-rpath-link,/usr/lib/aarch64-linux-gnu/hdf5/serial /usr/lib/aarch64-linux-gnu/libpbbam.so /usr/lib/aarch64-linux-gnu/libpbcopper.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhts.so -lrt /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so -Wl,--end-group
[140/187] /usr/bin/meson --internal symbolextractor /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu libblasr.so.5.3.5 libblasr.so.5.3.5 libblasr.so.5.3.5.p/libblasr.so.5.3.5.symbols --cross-host=linux
[141/187] rm -f libblasr.a && /usr/bin/aarch64-linux-gnu-ar csrD libblasr.a libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o
[142/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[143/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -c ../unittest/alignment/files/CCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/CCSIterator_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[144/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -c ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[145/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[146/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMPrinter_gtest.cpp
[147/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMHeaderPrinter_gtest.cpp
[148/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/CmpIndexedStringTable_gtest.cpp
[149/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/AlignmentMap_gtest.cpp
[150/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/SequentialZmwGroupQuery_gtest.cpp
[151/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/PbiFilterZmwGroupQuery_gtest.cpp
[152/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -c ../unittest/alignment/utils/FileUtils_gtest.cpp
[153/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -c ../unittest/alignment/utils/RangeUtils_gtest.cpp
[154/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -c ../unittest/alignment/utils/RegionUtils_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[155/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -c ../unittest/hdf/HDFScanDataWriter_gtest.cpp
[156/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -c ../unittest/hdf/HDFCCSReader_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFCCSReader.hpp:93:57:   required from ‘int HDFCCSReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFCCSReader_gtest.cpp:39:5:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[157/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -c ../unittest/hdf/HDFZMWReader_gtest.cpp
[158/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -c ../unittest/hdf/HDFPlsReader_gtest.cpp
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[159/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -c ../unittest/hdf/HDF2DArray_gtest.cpp
[160/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -c ../unittest/hdf/HDFUtils_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../unittest/hdf/HDFUtils_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[161/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -c ../unittest/hdf/HDFBasReader_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFBasReader_gtest.cpp:33:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[162/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -c ../unittest/hdf/HDFScanDataReader_gtest.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9:
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const std::string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/hdf5/serial/H5Attribute.h:32:5: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   32 |     Attribute(const Attribute &original);
      |     ^~~~~~~~~
[163/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -c ../unittest/pbdata/metagenome/TitleTable_gtest.cpp
[164/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -c ../unittest/pbdata/saf/RefInfo_gtest.cpp
[165/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -c ../unittest/pbdata/saf/MovieInfo_gtest.cpp
[166/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -c ../unittest/pbdata/saf/AlnGroup_gtest.cpp
[167/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -c ../unittest/pbdata/utils/SMRTTitle_gtest.cpp
[168/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -c ../unittest/pbdata/qvs/QualityValueVector_gtest.cpp
[169/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -c ../unittest/pbdata/reads/RegionTypeMap_gtest.cpp
[170/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -c ../unittest/pbdata/reads/ReadType_gtest.cpp
[171/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -c ../unittest/pbdata/reads/RegionAnnotations_gtest.cpp
[172/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -c ../unittest/pbdata/ScanData_gtest.cpp
[173/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -c ../unittest/pbdata/StringUtils_gtest.cpp
[174/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -c ../unittest/pbdata/SMRTSequence_gtest.cpp
../unittest/pbdata/SMRTSequence_gtest.cpp: In function ‘SMRTSequence _make_a_smrt_read_(const std::string&, const UInt&, DNALength, DNALength, const std::string&, bool, bool, bool, int, int, char, int, char)’:
../unittest/pbdata/SMRTSequence_gtest.cpp:66:12: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
   66 |     return smrt;
      |            ^~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymerase_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/12/vector:64,
                 from /usr/include/gtest/gtest.h:57,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:673:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; allocator_type = std::allocator<SMRTSequence>]’
  673 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:673:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; allocator_type = std::allocator<SMRTSequence>]’
  673 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletion_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:673:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; allocator_type = std::allocator<SMRTSequence>]’
  673 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:673:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; allocator_type = std::allocator<SMRTSequence>]’
  673 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletionNoSubstitution_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:673:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; allocator_type = std::allocator<SMRTSequence>]’
  673 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
/usr/aarch64-linux-gnu/include/c++/12/bits/stl_vector.h:673:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; allocator_type = std::allocator<SMRTSequence>]’
  673 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
[175/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o -c ../unittest/pbdata/NucConversion_gtest.cpp
[176/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o -c ../unittest/pbdata/VectorUtils_gtest.cpp
[177/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o -c ../unittest/pbdata/defs_gtest.cpp
[178/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o -c ../unittest/pbdata/FASTASequence_gtest.cpp
[179/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o -c ../unittest/pbdata/ChangeListID_gtest.cpp
[180/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -c ../unittest/pbdata/FASTQReader_gtest.cpp
[181/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -c ../unittest/pbdata/SeqUtils_gtest.cpp
[182/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -c ../unittest/pbdata/CCSSequence_gtest.cpp
[183/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -c ../unittest/pbdata/utils_gtest.cpp
[184/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -c ../unittest/pbdata/FASTQSequence_gtest.cpp
[185/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -c ../unittest/pbdata/DNASequence_gtest.cpp
[186/187] /usr/bin/aarch64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -c ../unittest/pbdata/FASTAReader_gtest.cpp
[187/187] /usr/bin/aarch64-linux-gnu-g++  -o unittest/libblasr_unittest unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now '-Wl,-rpath,$ORIGIN/..:/usr/lib/aarch64-linux-gnu/hdf5/serial' -Wl,-rpath-link,/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/ -Wl,-rpath-link,/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--start-group libblasr.so.5.3.5 /usr/lib/aarch64-linux-gnu/libpbbam.so /usr/lib/aarch64-linux-gnu/libpbcopper.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhts.so -lrt /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a -lpthread -Wl,--end-group
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
	cd obj-aarch64-linux-gnu && DESTDIR=/<<BUILDDIR>>/pbseqlib-5.3.5\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install
[0/1] Installing files.
Installing libblasr.so.5.3.5 to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu
Installing libblasr.a to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu
Installing /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/LibBlasrConfig.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollection.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollectionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFAtom.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFAttributable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFBaseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFBaxWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFCCSReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpExperimentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRefAlignmentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRootGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpSupportedFields.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFCommonFG.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFConfig.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFFileLogGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFMovieInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFNewBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseDataFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFRefGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFRefInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFSentinalFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFSMRTSequenceReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFWriteBuffer.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFWriterBase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWMetricsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPColumn.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPFragment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineGuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineKBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentFormats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/BaseScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ExtendAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/FullQVAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaper.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaperImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/IDSScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/KBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/OneGapAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/QualityValueScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ScoreMatrices.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/StringToScoreMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpoint.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpointImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearch.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearchImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ClusterProbability.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/Coordinate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChain.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChainImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISQValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTree.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchors.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/compare/CompareStrings.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/compare/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/DifferenceCovers.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/Karkkainen.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/LightweightSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/MultikeyQuicksort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting/
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/qsufsort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting/
Installing /<<PKGBUILDDIR>>/alignment/bwt/BWT.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt/
Installing /<<PKGBUILDDIR>>/alignment/bwt/Occ.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt/
Installing /<<PKGBUILDDIR>>/alignment/bwt/PackedHash.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt/
Installing /<<PKGBUILDDIR>>/alignment/bwt/Pos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignedPair.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentCandidate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentContext.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentGapList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Alignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentStats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/ByteAlignment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpIndexedStringTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpReadGroupTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpRefSeqTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/FilterCriteria.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Path.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMQVConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/AnchorParameters.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/ClusterList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/MatchPos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/WeightedInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring/
Installing /<<PKGBUILDDIR>>/alignment/files/BaseSequenceIO.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files/
Installing /<<PKGBUILDDIR>>/alignment/files/CCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files/
Installing /<<PKGBUILDDIR>>/alignment/files/FragmentCCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files/
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files/
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerateImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files/
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/IntervalPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/SAMHeaderPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/StickAlignmentPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/SummaryPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/VulgarPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/format/XMLPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format/
Installing /<<PKGBUILDDIR>>/alignment/ipc/SharedMemoryAllocator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/ipc/
Installing /<<PKGBUILDDIR>>/alignment/query/PbiFilterZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query/
Installing /<<PKGBUILDDIR>>/alignment/query/SequentialZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query/
Installing /<<PKGBUILDDIR>>/alignment/qvs/QualityValueProfile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/qvs/
Installing /<<PKGBUILDDIR>>/alignment/simulator/CDFMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextOutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/simulator/LengthHistogram.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleListSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/simulator/QualitySample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator/
Installing /<<PKGBUILDDIR>>/alignment/statistics/AnchorDistributionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics/
Installing /<<PKGBUILDDIR>>/alignment/statistics/cdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics/
Installing /<<PKGBUILDDIR>>/alignment/statistics/LookupAnchorDistribution.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics/
Installing /<<PKGBUILDDIR>>/alignment/statistics/pdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics/
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics/
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics/
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics/
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulatorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics/
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/LCPTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray/
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SharedSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray/
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/ssort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray/
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray/
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArrayTypes.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray/
Installing /<<PKGBUILDDIR>>/alignment/tuples/BaseTuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/CompressedDNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/CountedTuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTableImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/tuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMask.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatching.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatchingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleOperations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleTranslations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples/
Installing /<<PKGBUILDDIR>>/alignment/utils/FileOfFileNames.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils/
Installing /<<PKGBUILDDIR>>/alignment/utils/FileUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils/
Installing /<<PKGBUILDDIR>>/alignment/utils/LogUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils/
Installing /<<PKGBUILDDIR>>/alignment/utils/PhredUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils/
Installing /<<PKGBUILDDIR>>/alignment/utils/RangeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils/
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils/
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils/
Installing /<<PKGBUILDDIR>>/alignment/utils/SimpleXMLUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils/
Installing /<<PKGBUILDDIR>>/alignment/MappingMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment/
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignmentImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment/
Installing /<<PKGBUILDDIR>>/pbdata/amos/AfgBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/amos/
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MetricField.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses/
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses/
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix/
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix/
Installing /<<PKGBUILDDIR>>/pbdata/matrix/Matrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix/
Installing /<<PKGBUILDDIR>>/pbdata/matrix/MatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix/
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/FindRandomSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome/
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome/
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome/
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/TitleTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome/
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs/
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs/
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs/
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs/
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/reads/AcqParams.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/HoleXY.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseBaseCommon.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadType.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotation.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotations.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTypeMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/ScanData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/reads/ZMWGroupEntry.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads/
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf/
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf/
Installing /<<PKGBUILDDIR>>/pbdata/saf/MovieInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf/
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf/
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf/
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/CigarString.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReadGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReferenceSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMFlag.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMHeader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePair.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePairImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReaderImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam/
Installing /<<PKGBUILDDIR>>/pbdata/utils/BitUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils/
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTReadUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils/
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTTitle.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils/
Installing /<<PKGBUILDDIR>>/pbdata/utils/TimeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils/
Installing /<<PKGBUILDDIR>>/pbdata/CCSSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/ChangeListID.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/CommandLineParser.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/Compare4BitCompressed.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/CompressedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/defs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/DNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/Enumerations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/FASTAReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/FASTASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/FASTQReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/FASTQSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/GFFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/MD5Utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/MD5UtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/NucConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/PacBioDefs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/PackedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/PrettyException.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/ReverseCompressIndex.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/SMRTSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/StringUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/Types.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/utilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/pbdata/VectorUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/
Installing /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/meson-private/libblasr.pc to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig
Installing symlink pointing to libblasr.so.5.3.5 to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libblasr.so
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -p libpbdata-dev usr/include/libblasr/pbdata		usr/include/pbseq
dh_install -p libpbihdf-dev usr/include/libblasr/hdf		usr/include/pbseq
dh_install -p libblasr-dev  usr/include/libblasr/alignment	usr/include/pbseq
find -L debian/*/usr/include/ -type f -regextype posix-egrep -not -regex '.*(hpp|h)$' -delete
find debian/*/usr/include/ -name "*.mk" -delete
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --exclude-la \
	    --override s/libhdf5_serial_cpp103-dev/libhdf5-dev/ \
	    --override s/libpbbam1.6.0-dev/libpbbam-dev/ \
	    --override s/libpbcopper1.8.0-dev/libpbcopper-dev/ \
	    --movedev debian/tmp/usr/include/libblasr usr/include \
	    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/aarch64-linux-gnu/pkgconfig \
	    debian/tmp/usr/lib/*/libblasr.so
Library package automatic movement utility
 --> libhdf5-dev package exists.
 --> libpbbam-dev package exists.
 --> libpbcopper-dev package exists.
set -e
install -d -m 755 debian/libblasr-dev/usr/lib/aarch64-linux-gnu
install -d -m 755 debian/libblasr5.3.5/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libblasr.a debian/libblasr-dev/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libblasr.so debian/libblasr-dev/usr/lib/aarch64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libblasr.so.5.3.5 debian/libblasr5.3.5/usr/lib/aarch64-linux-gnu
PKGDEV=libblasr-dev
PKGSHL=libblasr5.3.5
install -d -m 755 debian/libblasr-dev/usr/include
mv debian/tmp/usr/include/libblasr debian/libblasr-dev/usr/include
install -d -m 755 debian/libblasr-dev/usr/lib/aarch64-linux-gnu/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libblasr-dev/usr/lib/aarch64-linux-gnu/pkgconfig
mv debian/libblasr-dev/usr/include/libblasr debian/libblasr-dev/usr/include/pbseq
mv debian/libblasr-dev/usr/include/pbseq/libblasr/LibBlasrConfig.h debian/libblasr-dev/usr/include/pbseq
dh_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package libblasr-dev: substitution variable ${devlibs:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libblasr-dev' in '../libblasr-dev_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libblasr5.3.5' in '../libblasr5.3.5_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libblasr5.3.5-dbgsym' in '../libblasr5.3.5-dbgsym_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libpbseq' in '../libpbseq_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libpbseq-dev' in '../libpbseq-dev_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libpbdata-dev' in '../libpbdata-dev_5.3.5+dfsg-4_arm64.deb'.
dpkg-deb: building package 'libpbihdf-dev' in '../libpbihdf-dev_5.3.5+dfsg-4_arm64.deb'.
 dpkg-genbuildinfo --build=any -O../pbseqlib_5.3.5+dfsg-4_arm64.buildinfo
 dpkg-genchanges --build=any -O../pbseqlib_5.3.5+dfsg-4_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-03-16T11:35:20Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


pbseqlib_5.3.5+dfsg-4_arm64.changes:
------------------------------------

Format: 1.8
Date: Tue, 08 Mar 2022 11:42:12 +0100
Source: pbseqlib
Binary: libblasr-dev libblasr5.3.5 libblasr5.3.5-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev
Built-For-Profiles: cross nocheck
Architecture: arm64
Version: 5.3.5+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libblasr-dev - tools for aligning PacBio reads to target sequences (development
 libblasr5.3.5 - tools for aligning PacBio reads to target sequences
 libpbdata-dev - tools for handling PacBio sequences (development files)
 libpbihdf-dev - tools for handling PacBio hdf5 files (development files)
 libpbseq   - library for analyzing PacBio sequencing data
 libpbseq-dev - library for analyzing PacBio sequencing data (development files)
Closes: 1006777
Changes:
 pbseqlib (5.3.5+dfsg-4) unstable; urgency=medium
 .
   * Switch watch file to tags
   * d/rules: drop DEB_CXXFLAGS_MAINT_APPEND=-O3 -std=c++14
     Closes: #1006777
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/<<BUILDDIR>>/pbseqlib_5.3.5+dfsg-4_arm64.changes.new could not be renamed to /<<BUILDDIR>>/pbseqlib_5.3.5+dfsg-4_arm64.changes: Illegal seek
Distribution field may be wrong!!!
+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Thu, 16 Mar 2023 11:35:19 +0000
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 SOURCE_DATE_EPOCH="1646736132"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libblasr-dev_5.3.5+dfsg-4_arm64.deb
-----------------------------------

 new Debian package, version 2.0.
 size 2010316 bytes: control archive=9484 bytes.
     816 bytes,    20 lines      control              
   45418 bytes,   467 lines      md5sums              
 Package: libblasr-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 15559
 Depends: libblasr5.3.5 (= 5.3.5+dfsg-4), libpbdata-dev (= 5.3.5+dfsg-4)
 Breaks: libblasr (<< 5.3.3)
 Replaces: libblasr (<< 5.3.3)
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the alignment
  sublibrary.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/
-rw-r--r-- root/root       130 2022-03-08 10:42 ./usr/include/pbseq/LibBlasrConfig.h
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/
-rw-r--r-- root/root      2868 2021-02-18 09:42 ./usr/include/pbseq/alignment/MappingMetrics.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/algorithms/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/alignment/algorithms/alignment/
-rw-r--r-- root/root     21547 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp
-rw-r--r-- root/root     14470 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp
-rw-r--r-- root/root       253 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentFormats.hpp
-rw-r--r-- root/root      5585 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp
-rw-r--r-- root/root     18470 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
-rw-r--r-- root/root       446 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/BaseScoreFunction.hpp
-rw-r--r-- root/root      1664 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
-rw-r--r-- root/root      4641 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
-rw-r--r-- root/root     14955 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/ExtendAlign.hpp
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/
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lrwxrwxrwx root/root         0 2022-03-08 10:42 ./usr/lib/aarch64-linux-gnu/libblasr.so -> libblasr.so.5.3.5
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/aarch64-linux-gnu/pkgconfig/
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-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libblasr-dev/copyright


libblasr5.3.5-dbgsym_5.3.5+dfsg-4_arm64.deb
-------------------------------------------

 new Debian package, version 2.0.
 size 7925628 bytes: control archive=564 bytes.
     417 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: libblasr5.3.5-dbgsym
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Auto-Built-Package: debug-symbols
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 8068
 Depends: libblasr5.3.5 (= 5.3.5+dfsg-4)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libblasr5.3.5
 Build-Ids: e6cfebc14a672cb10481ac204f565e488162e96c

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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/debug/
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-03-08 10:42 ./usr/share/doc/libblasr5.3.5-dbgsym -> libblasr5.3.5


libblasr5.3.5_5.3.5+dfsg-4_arm64.deb
------------------------------------

 new Debian package, version 2.0.
 size 1003864 bytes: control archive=968 bytes.
     797 bytes,    17 lines      control              
     232 bytes,     3 lines      md5sums              
      45 bytes,     1 lines      shlibs               
      68 bytes,     2 lines      triggers             
 Package: libblasr5.3.5
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3101
 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libhdf5-103-1, libhdf5-cpp-103-1 (>= 1.10.8), libpbbam2.1.0 (>= 2.1.0+dfsg), libpbcopper2.0.0 (>= 2.0.0+dfsg), libstdc++6 (>= 11)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the alignment sublibrary.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/lib/
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-rw-r--r-- root/root   3157160 2022-03-08 10:42 ./usr/lib/aarch64-linux-gnu/libblasr.so.5.3.5
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/libblasr5.3.5/
-rw-r--r-- root/root      1217 2022-03-08 10:42 ./usr/share/doc/libblasr5.3.5/changelog.Debian.gz
-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libblasr5.3.5/copyright


libpbdata-dev_5.3.5+dfsg-4_arm64.deb
------------------------------------

 new Debian package, version 2.0.
 size 40204 bytes: control archive=3040 bytes.
     691 bytes,    18 lines      control              
    6805 bytes,    85 lines      md5sums              
 Package: libpbdata-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 227
 Depends: libpbcopper-dev
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the pbdata
  sublibrary.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/pbdata/
-rw-r--r-- root/root      1419 2021-02-18 09:42 ./usr/include/pbseq/pbdata/CCSSequence.hpp
-rw-r--r-- root/root       854 2021-02-18 09:42 ./usr/include/pbseq/pbdata/ChangeListID.hpp
-rw-r--r-- root/root      4953 2021-02-18 09:42 ./usr/include/pbseq/pbdata/CommandLineParser.hpp
-rw-r--r-- root/root      2385 2021-02-18 09:42 ./usr/include/pbseq/pbdata/Compare4BitCompressed.hpp
-rw-r--r-- root/root      2366 2021-02-18 09:42 ./usr/include/pbseq/pbdata/CompressedDNASequence.hpp
-rw-r--r-- root/root      2394 2021-02-18 09:42 ./usr/include/pbseq/pbdata/CompressedSequence.hpp
-rw-r--r-- root/root      9494 2021-02-18 09:42 ./usr/include/pbseq/pbdata/CompressedSequenceImpl.hpp
-rw-r--r-- root/root      5024 2021-02-18 09:42 ./usr/include/pbseq/pbdata/DNASequence.hpp
-rw-r--r-- root/root       887 2021-02-18 09:42 ./usr/include/pbseq/pbdata/Enumerations.h
-rw-r--r-- root/root      1888 2021-02-18 09:42 ./usr/include/pbseq/pbdata/FASTAReader.hpp
-rw-r--r-- root/root      1917 2021-02-18 09:42 ./usr/include/pbseq/pbdata/FASTASequence.hpp
-rw-r--r-- root/root       512 2021-02-18 09:42 ./usr/include/pbseq/pbdata/FASTQReader.hpp
-rw-r--r-- root/root      5112 2021-02-18 09:42 ./usr/include/pbseq/pbdata/FASTQSequence.hpp
-rw-r--r-- root/root       685 2021-02-18 09:42 ./usr/include/pbseq/pbdata/GFFFile.hpp
-rw-r--r-- root/root      4233 2021-02-18 09:42 ./usr/include/pbseq/pbdata/MD5Utils.hpp
-rw-r--r-- root/root      1317 2021-02-18 09:42 ./usr/include/pbseq/pbdata/MD5UtilsImpl.hpp
-rw-r--r-- root/root       974 2021-02-18 09:42 ./usr/include/pbseq/pbdata/NucConversion.hpp
-rw-r--r-- root/root      5809 2021-02-18 09:42 ./usr/include/pbseq/pbdata/PacBioDefs.h
-rw-r--r-- root/root      1805 2021-02-18 09:42 ./usr/include/pbseq/pbdata/PackedDNASequence.hpp
-rw-r--r-- root/root       498 2021-02-18 09:42 ./usr/include/pbseq/pbdata/PrettyException.hpp
-rw-r--r-- root/root       501 2021-02-18 09:42 ./usr/include/pbseq/pbdata/ReverseCompressIndex.hpp
-rw-r--r-- root/root      6436 2021-02-18 09:42 ./usr/include/pbseq/pbdata/SMRTSequence.hpp
-rw-r--r-- root/root       362 2021-02-18 09:42 ./usr/include/pbseq/pbdata/SeqUtils.hpp
-rw-r--r-- root/root       975 2021-02-18 09:42 ./usr/include/pbseq/pbdata/SeqUtilsImpl.hpp
-rw-r--r-- root/root      2174 2021-02-18 09:42 ./usr/include/pbseq/pbdata/StringUtils.hpp
-rw-r--r-- root/root       725 2021-02-18 09:42 ./usr/include/pbseq/pbdata/Types.h
-rw-r--r-- root/root       408 2021-02-18 09:42 ./usr/include/pbseq/pbdata/VectorUtils.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/pbdata/alignment/
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-rw-r--r-- root/root       236 2021-02-18 09:42 ./usr/include/pbseq/pbdata/alignment/CmpAlignmentImpl.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/pbdata/amos/
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/pbdata/loadpulses/
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-rw-r--r-- root/root      4431 2021-02-18 09:42 ./usr/include/pbseq/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/pbdata/reads/
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-rw-r--r-- root/root       574 2021-02-18 09:42 ./usr/include/pbseq/pbdata/reads/PulseBaseCommon.hpp
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-rw-r--r-- root/root      2388 2021-02-18 09:42 ./usr/include/pbseq/pbdata/reads/ScanData.hpp
-rw-r--r-- root/root       294 2021-02-18 09:42 ./usr/include/pbseq/pbdata/reads/ZMWGroupEntry.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/pbdata/saf/
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-rw-r--r-- root/root       367 2021-02-18 09:42 ./usr/include/pbseq/pbdata/saf/MovieInfo.hpp
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-rw-r--r-- root/root       898 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/ReadGroup.hpp
-rw-r--r-- root/root      1639 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/ReferenceSequence.hpp
-rw-r--r-- root/root      2342 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMAlignment.hpp
-rw-r--r-- root/root       853 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMFlag.h
-rw-r--r-- root/root       420 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMHeader.hpp
-rw-r--r-- root/root      1137 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMKeywordValuePair.hpp
-rw-r--r-- root/root       833 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMKeywordValuePairImpl.hpp
-rw-r--r-- root/root      2346 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMReader.hpp
-rw-r--r-- root/root      8002 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMReaderImpl.hpp
-rw-r--r-- root/root       532 2021-02-18 09:42 ./usr/include/pbseq/pbdata/utils.hpp
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-rw-r--r-- root/root       523 2021-02-18 09:42 ./usr/include/pbseq/pbdata/utils/SMRTReadUtils.hpp
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drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/libpbdata-dev/
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libpbihdf-dev_5.3.5+dfsg-4_arm64.deb
------------------------------------

 new Debian package, version 2.0.
 size 46700 bytes: control archive=2132 bytes.
     668 bytes,    17 lines      control              
    4158 bytes,    55 lines      md5sums              
 Package: libpbihdf-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 329
 Depends: libhdf5-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio hdf5 files (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the hdf
  sublibrary.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/include/pbseq/hdf/
-rw-r--r-- root/root      5767 2022-03-08 10:42 ./usr/include/pbseq/hdf/BufferedHDF2DArray.hpp
-rw-r--r-- root/root     12469 2022-03-08 10:42 ./usr/include/pbseq/hdf/BufferedHDF2DArrayImpl.hpp
-rw-r--r-- root/root      8257 2022-03-08 10:42 ./usr/include/pbseq/hdf/BufferedHDFArray.hpp
-rw-r--r-- root/root     13367 2022-03-08 10:42 ./usr/include/pbseq/hdf/BufferedHDFArrayImpl.hpp
-rw-r--r-- root/root       970 2021-02-18 09:42 ./usr/include/pbseq/hdf/DatasetCollection.hpp
-rw-r--r-- root/root       967 2021-02-18 09:42 ./usr/include/pbseq/hdf/DatasetCollectionImpl.hpp
-rw-r--r-- root/root       653 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDF2DArray.hpp
-rw-r--r-- root/root      1129 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFAlnGroup.hpp
-rw-r--r-- root/root       481 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFAlnGroupGroup.hpp
-rw-r--r-- root/root      1125 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFAlnInfoGroup.hpp
-rw-r--r-- root/root      2361 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFArray.hpp
-rw-r--r-- root/root      5823 2022-03-08 10:42 ./usr/include/pbseq/hdf/HDFAtom.hpp
-rw-r--r-- root/root       488 2022-03-08 10:42 ./usr/include/pbseq/hdf/HDFAttributable.hpp
-rw-r--r-- root/root     41860 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBasReader.hpp
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-rw-r--r-- root/root      6346 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBaseCallsWriter.hpp
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-rw-r--r-- root/root     11612 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCCSReader.hpp
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-rw-r--r-- root/root      4075 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpRefAlignmentGroup.hpp
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-rw-r--r-- root/root       226 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpSupportedFields.hpp
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-rw-r--r-- root/root       174 2022-03-08 10:42 ./usr/include/pbseq/hdf/HDFConfig.hpp
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-rw-r--r-- root/root      1795 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPulseDataFile.hpp
-rw-r--r-- root/root      3358 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPulseWriter.hpp
-rw-r--r-- root/root      1920 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRefGroupGroup.hpp
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-rw-r--r-- root/root      1333 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRegionTableReader.hpp
-rw-r--r-- root/root      4108 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRegionTableWriter.hpp
-rw-r--r-- root/root      1923 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRegionsWriter.hpp
-rw-r--r-- root/root      2167 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFSMRTSequenceReader.hpp
-rw-r--r-- root/root      3280 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFScanDataReader.hpp
-rw-r--r-- root/root      2330 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFScanDataWriter.hpp
-rw-r--r-- root/root       484 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFSentinalFile.hpp
-rw-r--r-- root/root      1599 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFUtils.hpp
-rw-r--r-- root/root       928 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFWriteBuffer.hpp
-rw-r--r-- root/root      5105 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFWriterBase.hpp
-rw-r--r-- root/root      2023 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFZMWMetricsWriter.hpp
-rw-r--r-- root/root       991 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFZMWReader.hpp
-rw-r--r-- root/root      3966 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFZMWWriter.hpp
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/libpbihdf-dev/
-rw-r--r-- root/root      1216 2022-03-08 10:42 ./usr/share/doc/libpbihdf-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libpbihdf-dev/copyright


libpbseq-dev_5.3.5+dfsg-4_arm64.deb
-----------------------------------

 new Debian package, version 2.0.
 size 4480 bytes: control archive=772 bytes.
     770 bytes,    17 lines      control              
     152 bytes,     2 lines      md5sums              
 Package: libpbseq-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 13
 Depends: libpbdata-dev (= 5.3.5+dfsg-4), libpbihdf-dev (= 5.3.5+dfsg-4), libblasr-dev (= 5.3.5+dfsg-4)
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component development files.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/libpbseq-dev/
-rw-r--r-- root/root      1215 2022-03-08 10:42 ./usr/share/doc/libpbseq-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libpbseq-dev/copyright


libpbseq_5.3.5+dfsg-4_arm64.deb
-------------------------------

 new Debian package, version 2.0.
 size 4452 bytes: control archive=748 bytes.
     681 bytes,    17 lines      control              
     144 bytes,     2 lines      md5sums              
 Package: libpbseq
 Source: pbseqlib
 Version: 5.3.5+dfsg-4
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 13
 Depends: libblasr5.3.5 (= 5.3.5+dfsg-4)
 Section: science
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component shared libraries.

drwxr-xr-x root/root         0 2022-03-08 10:42 ./
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-03-08 10:42 ./usr/share/doc/libpbseq/
-rw-r--r-- root/root      1214 2022-03-08 10:42 ./usr/share/doc/libpbseq/changelog.Debian.gz
-rw-r--r-- root/root      4767 2022-03-08 10:42 ./usr/share/doc/libpbseq/copyright


lintian
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Merged Build-Depends: lintian:amd64
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The following additional packages will be installed:
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  perl-openssl-defaults plzip t1utils unzip
Suggested packages:
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  libscalar-number-perl libbareword-filehandles-perl libindirect-perl
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Recommended packages:
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  libfreezethaw-perl libmath-base85-perl libsocket6-perl
  libpackage-stash-xs-perl libxstring-perl libdata-dump-perl
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The following NEW packages will be installed:
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  libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
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  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
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Setting up libapt-pkg-perl (0.1.40+b2) ...
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Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ...
Setting up plzip (1.10-5) ...
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode
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Setting up libyaml-0-2:amd64 (0.2.5-1) ...
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Setting up libcpanel-json-xs-perl:amd64 (4.35-1) ...
Setting up libhtml-tagset-perl (3.20-6) ...
Setting up libdevel-size-perl (0.83-2+b1) ...
Setting up unzip (6.0-28) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libyaml-libyaml-perl (0.86+ds-1) ...
Setting up libio-interactive-perl (1.023-2) ...
Setting up libtry-tiny-perl (0.31-2) ...
Setting up perl-openssl-defaults:amd64 (7+b1) ...
Setting up libmldbm-perl (2.05-4) ...
Setting up liblzo2-2:amd64 (2.10-2) ...
Setting up libtime-moment-perl (0.44-2+b1) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libassuan0:amd64 (2.5.5-5) ...
Setting up libconfig-tiny-perl (2.28-2) ...
Setting up libsereal-encoder-perl (5.003+ds-1) ...
Setting up liblist-utilsby-perl (0.12-2) ...
Setting up libnet-netmask-perl (2.0002-2) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up patchutils (0.4.2-1) ...
Setting up libjson-maybexs-perl (1.004004-1) ...
Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ...
Setting up libclass-data-inheritable-perl (0.08-3) ...
Setting up libxs-parse-keyword-perl (0.33-1) ...
Setting up libipc-system-simple-perl (1.30-2) ...
Setting up libnet-domain-tld-perl (1.75-3) ...
Setting up libperlio-utf8-strict-perl (0.010-1) ...
Setting up t1utils (1.41-4) ...
Setting up diffstat (1.65-1) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libtime-duration-perl (1.21-2) ...
Setting up libtext-xslate-perl:amd64 (3.5.9-1+b2) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libcapture-tiny-perl (0.48-2) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libregexp-ipv6-perl (0.03-3) ...
Setting up libsub-name-perl:amd64 (0.26-2+b1) ...
Setting up libsyntax-keyword-try-perl (0.28-1) ...
Setting up libdata-validate-domain-perl (0.10-1.1) ...
Setting up libproc-processtable-perl:amd64 (0.634-1+b2) ...
Setting up libpath-tiny-perl (0.144-1) ...
Setting up lzop (1.04-2) ...
Setting up gpgconf (2.2.40-1) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libipc-run3-perl (0.048-3) ...
Setting up libregexp-wildcards-perl (1.05-3) ...
Setting up libaliased-perl (0.34-3) ...
Setting up netbase (6.4) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up libclass-xsaccessor-perl (1.19-4+b1) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libterm-readkey-perl (2.38-2+b1) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up openssl (3.0.8-1) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b1) ...
Setting up libperlio-gzip-perl (0.20-1+b1) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.003+ds-1) ...
Setting up libmarkdown2:amd64 (2.2.7-2) ...
Setting up liburi-perl (5.17-1) ...
Setting up iso-codes (4.13.0-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up gpg (2.2.40-1) ...
Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b1) ...
Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.15-1) ...
Setting up libnet-http-perl (6.22-1) ...
Setting up libtext-markdown-discount-perl (0.16-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.008-2) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libdata-validate-uri-perl (0.07-2) ...
Setting up libdata-optlist-perl (0.113-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libhtml-parser-perl:amd64 (3.81-1) ...
Setting up libio-socket-ssl-perl (2.081-2) ...
Setting up libsub-exporter-perl (0.989-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libhtml-form-perl (6.11-1) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.10-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b1) ...
Setting up libcgi-pm-perl (4.55-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.58-2) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-perl (6.68-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.16-1) ...
Setting up liblwp-protocol-https-perl (6.10-1) ...
Setting up lintian (2.116.3) ...
Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ...
Processing triggers for libc-bin (2.36-8) ...
Processing triggers for man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 300644
Build-Time: 420
Distribution: unstable
Foreign Architectures: arm64
Host Architecture: arm64
Install-Time: 18
Job: pbseqlib_5.3.5+dfsg-4
Lintian: pass
Machine Architecture: amd64
Package: pbseqlib
Package-Time: 449
Source-Version: 5.3.5+dfsg-4
Space: 300644
Status: successful
Version: 5.3.5+dfsg-4
--------------------------------------------------------------------------------
Finished at 2023-03-16T11:35:20Z
Build needed 00:07:29, 300644k disk space