sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | phylonium 1.7-1 (i386) Sun, 09 Jul 2023 20:11:05 +0000 | +==============================================================================+ Package: phylonium Version: 1.7-1 Source Version: 1.7-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.NSX1fNagQs... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/phylonium-z3y3fr/resolver-OKvIa4' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [199 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.2 MB] Get:3 http://mirror.einval.org/debian unstable/main i386 Packages [9439 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [9398 kB] Fetched 29.2 MB in 8s (3806 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libsepol2 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 248 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 libsepol2 arm64 3.5-1 [248 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 248 kB in 0s (8380 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10819 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-1_arm64.deb ... Unpacking libsepol2:arm64 (3.5-1) over (3.4-2.1) ... Setting up libsepol2:arm64 (3.5-1) ... Processing triggers for libc-bin (2.37-5) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'phylonium' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/phylonium.git Please use: git clone https://salsa.debian.org/med-team/phylonium.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 44.5 MB of source archives. Get:1 http://mirror.einval.org/debian unstable/main phylonium 1.7-1 (dsc) [1682 B] Get:2 http://mirror.einval.org/debian unstable/main phylonium 1.7-1 (tar) [44.1 MB] Get:3 http://mirror.einval.org/debian unstable/main phylonium 1.7-1 (tar) [424 kB] Get:4 http://mirror.einval.org/debian unstable/main phylonium 1.7-1 (diff) [4956 B] Fetched 44.5 MB in 1s (85.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/phylonium-z3y3fr/phylonium-1.7' with '<>' I: NOTICE: Log filtering will replace 'build/phylonium-z3y3fr' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [730 B] Get:5 copy:/<>/apt_archive ./ Packages [772 B] Fetched 2111 B in 0s (121 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu gcc-12-i686-linux-gnu-base gcc-13-base:i386 gcc-13-cross-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libdivsufsort-dev:i386 libdivsufsort3:i386 libelf1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libssl3:i386 libstdc++-12-dev:i386 libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-i686-linux-gnu gcc-12-doc gcc-12-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 krb5-doc:i386 krb5-user:i386 libstdc++-12-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:i386 libarchive-cpio-perl krb5-locales:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu gcc-12-i686-linux-gnu-base gcc-13-base:i386 gcc-13-cross-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libdivsufsort-dev:i386 libdivsufsort3:i386 libelf1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libssl3:i386 libstdc++-12-dev:i386 libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils ucf 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 90.8 MB of archives. After this operation, 367 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.20 [19.3 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.44-3 [42.5 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-12 [159 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-3 [276 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-12 [495 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu-base arm64 12.3.0-4cross1 [39.8 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-12-i686-linux-gnu arm64 12.3.0-4cross1 [8842 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:12.3.0-1 [3980 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.40.90.20230705-1 [2381 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 gcc-12-cross-base all 12.3.0-4cross1 [35.2 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.1.0-6cross1 [34.1 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.37-3cross1 [1338 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 13.1.0-6cross1 [65.9 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 13.1.0-6cross1 [129 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 13.1.0-6cross1 [27.1 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 13.1.0-6cross1 [7404 B] Get:31 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 13.1.0-6cross1 [2469 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 13.1.0-6cross1 [701 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 13.1.0-6cross1 [983 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 13.1.0-6cross1 [229 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libgcc-12-dev-i386-cross all 12.3.0-4cross1 [2428 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu arm64 12.3.0-4cross1 [17.6 MB] Get:37 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:12.3.0-1 [1468 B] Get:38 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.3.7-1cross1 [1918 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.37-3cross1 [1715 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libstdc++-12-dev-i386-cross all 12.3.0-4cross1 [2106 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 g++-12-i686-linux-gnu arm64 12.3.0-4cross1 [9675 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:12.3.0-1 [1168 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.30-2 [63.4 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.10 [3480 B] Get:59 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-5 [517 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get:64 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:66 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.189-4 [173 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-12 [1248 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.4 [942 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.31-1.2 [27.9 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.31-1.2 [66.4 kB] Get:74 http://mirror.einval.org/debian unstable/main i386 gcc-12-base i386 12.3.0-5 [39.7 kB] Get:75 http://mirror.einval.org/debian unstable/main i386 gcc-13-base i386 13.1.0-7 [38.6 kB] Get:76 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 13.1.0-7 [65.9 kB] Get:77 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.37-5 [2622 kB] Get:78 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 13.1.0-7 [2470 kB] Get:79 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 13.1.0-7 [7616 B] Get:80 http://mirror.einval.org/debian unstable/main i386 linux-libc-dev i386 6.3.11-1 [1789 kB] Get:81 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.35-1 [96.0 kB] Get:82 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.35-1 [126 kB] Get:83 http://mirror.einval.org/debian unstable/main i386 libcom-err2 i386 1.47.0-2 [20.1 kB] Get:84 http://mirror.einval.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-2 [35.1 kB] Get:85 http://mirror.einval.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-2 [82.4 kB] Get:86 http://mirror.einval.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-2 [9284 B] Get:87 http://mirror.einval.org/debian unstable/main i386 libssl3 i386 3.0.9-1 [2019 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-2 [359 kB] Get:89 http://mirror.einval.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-2 [144 kB] Get:90 http://mirror.einval.org/debian unstable/main i386 libtirpc3 i386 1.3.3+ds-1 [92.6 kB] Get:91 http://mirror.einval.org/debian unstable/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libtirpc-dev i386 1.3.3+ds-1 [202 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.37-5 [1719 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 libdivsufsort3 i386 2.0.1-5 [49.5 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 libdivsufsort-dev i386 2.0.1-5 [19.1 kB] Get:97 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 13.1.0-7 [131 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 13.1.0-7 [27.6 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 13.1.0-7 [747 kB] Get:100 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 13.1.0-7 [984 kB] Get:101 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 13.1.0-7 [229 kB] Get:102 http://mirror.einval.org/debian unstable/main i386 libgcc-12-dev i386 12.3.0-5 [2426 kB] Get:103 http://mirror.einval.org/debian unstable/main i386 libstdc++-12-dev i386 12.3.0-5 [2123 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 90.8 MB in 1s (90.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 10819 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... 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Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libicu72:arm64 (72.1-3) ... Setting up gcc-12-cross-base (12.3.0-4cross1) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up binutils-i686-linux-gnu (2.40.90.20230705-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up linux-libc-dev:i386 (6.3.11-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up libfakeroot:arm64 (1.31-1.2) ... Setting up gcc-12-base:i386 (12.3.0-5) ... Setting up gcc-12-i686-linux-gnu-base:arm64 (12.3.0-4cross1) ... Setting up fakeroot (1.31-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up linux-libc-dev-i386-cross (6.3.7-1cross1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:i386 (13.1.0-7) ... Setting up gcc-13-cross-base (13.1.0-6cross1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libc6-i386-cross (2.37-3cross1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libquadmath0-i386-cross (13.1.0-6cross1) ... Setting up libelf1:arm64 (0.189-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up cpp-12-i686-linux-gnu (12.3.0-4cross1) ... Setting up libtool (2.4.7-5) ... Setting up libatomic1-i386-cross (13.1.0-6cross1) ... Setting up libgomp1-i386-cross (13.1.0-6cross1) ... Setting up libc6-dev-i386-cross (2.37-3cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (13.1.0-6cross1) ... Setting up dh-autoreconf (20) ... Setting up libitm1-i386-cross (13.1.0-6cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up cpp-i686-linux-gnu (4:12.3.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan8-i386-cross (13.1.0-6cross1) ... Setting up libstdc++6-i386-cross (13.1.0-6cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.11.4) ... Setting up libubsan1-i386-cross (13.1.0-6cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libgcc-12-dev-i386-cross (12.3.0-4cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libstdc++-12-dev-i386-cross (12.3.0-4cross1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up gcc-12-i686-linux-gnu (12.3.0-4cross1) ... Setting up g++-12-i686-linux-gnu (12.3.0-4cross1) ... Setting up gcc-i686-linux-gnu (4:12.3.0-1) ... Setting up dpkg-cross (2.6.20) ... Setting up g++-i686-linux-gnu (4:12.3.0-1) ... Setting up crossbuild-essential-i386 (12.10) ... Setting up libgcc-s1:i386 (13.1.0-7) ... Setting up libc6:i386 (2.37-5) ... Setting up libasan8:i386 (13.1.0-7) ... Setting up libdivsufsort3:i386 (2.0.1-5) ... Setting up libstdc++6:i386 (13.1.0-7) ... Setting up libitm1:i386 (13.1.0-7) ... Setting up libdivsufsort-dev:i386 (2.0.1-5) ... Setting up libkeyutils1:i386 (1.6.3-2) ... Setting up libssl3:i386 (3.0.9-1) ... Setting up libcrypt1:i386 (1:4.4.35-1) ... Setting up libcom-err2:i386 (1.47.0-2) ... Setting up libgomp1:i386 (13.1.0-7) ... Setting up libkrb5support0:i386 (1.20.1-2) ... Setting up libquadmath0:i386 (13.1.0-7) ... Setting up libatomic1:i386 (13.1.0-7) ... Setting up libk5crypto3:i386 (1.20.1-2) ... Setting up libubsan1:i386 (13.1.0-7) ... Setting up libcrypt-dev:i386 (1:4.4.35-1) ... Setting up libkrb5-3:i386 (1.20.1-2) ... Setting up libgcc-12-dev:i386 (12.3.0-5) ... Setting up libgssapi-krb5-2:i386 (1.20.1-2) ... Setting up libtirpc3:i386 (1.3.3+ds-1) ... Setting up libtirpc-dev:i386 (1.3.3+ds-1) ... Setting up libnsl2:i386 (1.3.0-2) ... Setting up libnsl-dev:i386 (1.3.0-2) ... Setting up libc6-dev:i386 (2.37-5) ... Setting up libstdc++-12-dev:i386 (12.3.0-5) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.37-5) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.40.90.20230705-1 dpkg-dev_1.21.22 g++-12_12.3.0-5 gcc-12_12.3.0-5 libc6-dev_2.37-5 libstdc++-12-dev_12.3.0-5 libstdc++-12-dev-i386-cross_12.3.0-4cross1 libstdc++6_13.1.0-7 libstdc++6-i386-cross_13.1.0-6cross1 linux-libc-dev_6.3.11-1 Package versions: adduser_3.137 apt_2.6.1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.1 bash_5.2.15-2+b2 binutils_2.40.90.20230705-1 binutils-aarch64-linux-gnu_2.40.90.20230705-1 binutils-common_2.40.90.20230705-1 binutils-i686-linux-gnu_2.40.90.20230705-1 bsdextrautils_2.38.1-5+b1 bsdutils_1:2.38.1-5+b1 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.3.0-1 cpp-12_12.3.0-5 cpp-12-i686-linux-gnu_12.3.0-4cross1 cpp-i686-linux-gnu_4:12.3.0-1 cross-config_2.6.20 crossbuild-essential-i386_12.10 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.3 debianutils_5.7-0.5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-5 g++_4:12.3.0-1 g++-12_12.3.0-5 g++-12-i686-linux-gnu_12.3.0-4cross1 g++-i686-linux-gnu_4:12.3.0-1 gcc_4:12.3.0-1 gcc-12_12.3.0-5 gcc-12-base_12.3.0-5 gcc-12-cross-base_12.3.0-4cross1 gcc-12-i686-linux-gnu_12.3.0-4cross1 gcc-12-i686-linux-gnu-base_12.3.0-4cross1 gcc-13-base_13.1.0-7 gcc-13-cross-base_13.1.0-6cross1 gcc-i686-linux-gnu_4:12.3.0-1 gettext_0.21-12 gettext-base_0.21-12 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.6.1 libarchive-zip-perl_1.68-1 libasan8_13.1.0-7 libasan8-i386-cross_13.1.0-6cross1 libatomic1_13.1.0-7 libatomic1-i386-cross_13.1.0-6cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libbinutils_2.40.90.20230705-1 libblkid1_2.38.1-5+b1 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-5 libc-dev-bin_2.37-5 libc6_2.37-5 libc6-dev_2.37-5 libc6-dev-i386-cross_2.37-3cross1 libc6-i386-cross_2.37-3cross1 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-4 libcc1-0_13.1.0-7 libcom-err2_1.47.0-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.35-1 libcrypt1_1:4.4.35-1 libctf-nobfd0_2.40.90.20230705-1 libctf0_2.40.90.20230705-1 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.270 libdebhelper-perl_13.11.4 libdebian-dpkgcross-perl_2.6.20 libdivsufsort-dev_2.0.1-5 libdivsufsort3_2.0.1-5 libdpkg-perl_1.21.22 libelf1_0.189-4 libfakeroot_1.31-1.2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-12-dev_12.3.0-5 libgcc-12-dev-i386-cross_12.3.0-4cross1 libgcc-s1_13.1.0-7 libgcc-s1-i386-cross_13.1.0-6cross1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-2 libgomp1_13.1.0-7 libgomp1-i386-cross_13.1.0-6cross1 libgpg-error0_1.46-1 libgprofng0_2.40.90.20230705-1 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.8.1-2 libhwasan0_13.1.0-7 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-4 libisl23_0.26-3 libitm1_13.1.0-7 libitm1-i386-cross_13.1.0-6cross1 libjansson4_2.14-2 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 liblocale-gettext-perl_1.07-5 liblsan0_13.1.0-7 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.1.0-1 libmount1_2.38.1-5+b1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-2 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libquadmath0_13.1.0-7 libquadmath0-i386-cross_13.1.0-6cross1 libseccomp2_2.5.4-1+b3 libselinux1_3.4-1+b6 libsemanage-common_3.4-1 libsemanage2_3.4-1+b5 libsepol2_3.5-1 libsframe1_2.40.90.20230705-1 libsmartcols1_2.38.1-5+b1 libssl3_3.0.9-1 libstdc++-12-dev_12.3.0-5 libstdc++-12-dev-i386-cross_12.3.0-4cross1 libstdc++6_13.1.0-7 libstdc++6-i386-cross_13.1.0-6cross1 libsub-override-perl_0.09-4 libsystemd0_253.5-1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20230625-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan2_13.1.0-7 libubsan1_13.1.0-7 libubsan1-i386-cross_13.1.0-6cross1 libuchardet0_0.0.7-1 libudev1_253.5-1 libunistring2_1.0-2 libuuid1_2.38.1-5+b1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.3.11-1 linux-libc-dev-i386-cross_6.3.7-1cross1 login_1:4.13+dfsg1-1+b1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20230525-1 ncurses-base_6.4+20230625-1 ncurses-bin_6.4+20230625-1 passwd_1:4.13+dfsg1-1+b1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.07-1 tar_1.34+dfsg-1.2 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.38.1-5+b1 util-linux-extra_2.38.1-5+b1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: phylonium Binary: phylonium Architecture: any Version: 1.7-1 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl Homepage: https://github.com/EvolBioInf/phylonium Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/phylonium Vcs-Git: https://salsa.debian.org/med-team/phylonium.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libdivsufsort-dev Package-List: phylonium deb science optional arch=any Checksums-Sha1: 7245812e1aa646235d2c3238a87b19c1f9d045dd 44071659 phylonium_1.7.orig-debian-tests-data.tar.gz 452d117b87b8473e2cc710feb5caa32581fad424 424468 phylonium_1.7.orig.tar.gz c16d4964dcc77ff8a860a7c553694f4583f4b0b9 4956 phylonium_1.7-1.debian.tar.xz Checksums-Sha256: 004b12f29d12ff61334ff18919db62d3557aba3b72eaa1c2a3c7e1091cd0197b 44071659 phylonium_1.7.orig-debian-tests-data.tar.gz 4a19798ecff468e905a3ed2f6a859f65f6d163151cbbc78095e11b4c20a8e9bf 424468 phylonium_1.7.orig.tar.gz 9abf8951d5b72709b374c35d8a25bc971b3ae4736c4fefa62e3aa05e08154cfb 4956 phylonium_1.7-1.debian.tar.xz Files: 21a3be06d87270c5bc287173f53b1a94 44071659 phylonium_1.7.orig-debian-tests-data.tar.gz 73b8346f68f8cfeafc342a9aca9862c5 424468 phylonium_1.7.orig.tar.gz 904dc3b52d5b5c834930de0e07312c4a 4956 phylonium_1.7-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iIgEARYIADAWIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZJaymxIcbmlsZXNoQGRl Ymlhbi5vcmcACgkQKieQS9ckPtq9tQEAnVyd3WjIbO1XZkIi6d0gYlFnC77CDye4 78LDSbok/1sA/1vWV51DeZat8uIXywVvKaFJ15OwFroFEUEAPAmoWHQB =3WYw -----END PGP SIGNATURE----- gpgv: Signature made Sat Jun 24 09:08:43 2023 UTC gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./phylonium_1.7-1.dsc: no acceptable signature found dpkg-source: info: extracting phylonium in /<> dpkg-source: info: unpacking phylonium_1.7.orig.tar.gz dpkg-source: info: unpacking phylonium_1.7.orig-debian-tests-data.tar.gz dpkg-source: info: unpacking phylonium_1.7-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package phylonium dpkg-buildpackage: info: source version 1.7-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:3: installing './install-sh' configure.ac:3: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:7: warning: source file '$(top_srcdir)/src/esa.cxx' is in a subdirectory, test/Makefile.am:7: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. test/Makefile.am:7: warning: source file '$(top_srcdir)/src/evo_model.cxx' is in a subdirectory, test/Makefile.am:7: but option 'subdir-objects' is disabled test/Makefile.am:7: warning: source file '$(top_srcdir)/src/process.cxx' is in a subdirectory, test/Makefile.am:7: but option 'subdir-objects' is disabled test/Makefile.am:7: warning: source file '$(top_srcdir)/src/sequence.cxx' is in a subdirectory, test/Makefile.am:7: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.i386 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of i686-linux-gnu-gcc... none checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking for i686-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of i686-linux-gnu-g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... i686-linux-gnu-gcc -E checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking the archiver (i686-linux-gnu-ar) interface... ar checking for i686-linux-gnu-g++ option to support OpenMP... -fopenmp checking whether i686-linux-gnu-g++ supports C++17 features with -std=gnu++17... yes checking for i686-linux-gnu-gcc option to support OpenMP... -fopenmp checking for __attribute__((ifunc))... yes checking for cos in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for divsufsort64.h... yes checking for divsufsort64 in -ldivsufsort64... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for err.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating libs/Makefile config.status: creating Makefile config.status: creating man/phylonium.1 config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating config.h config.status: executing depfiles commands make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in libs make[3]: Entering directory '/<>/libs' rm -f libcompat.a i686-linux-gnu-ar cru libcompat.a i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libcompat.a i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a i686-linux-gnu-ar cru libpfasta.a libpfasta_a-pfasta.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libpfasta.a i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o revseqcmp.o revseqcmp.c i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mssse3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librevseqcmp_ssse3_a-revseqcmp_ssse3.o `test -f 'revseqcmp_ssse3.c' || echo './'`revseqcmp_ssse3.c rm -f librevseqcmp_ssse3.a i686-linux-gnu-ar cru librevseqcmp_ssse3.a librevseqcmp_ssse3_a-revseqcmp_ssse3.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib librevseqcmp_ssse3.a i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mavx2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librevseqcmp_avx2_a-revseqcmp_avx2.o `test -f 'revseqcmp_avx2.c' || echo './'`revseqcmp_avx2.c rm -f librevseqcmp_avx2.a i686-linux-gnu-ar cru librevseqcmp_avx2.a librevseqcmp_avx2_a-revseqcmp_avx2.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib librevseqcmp_avx2.a rm -f librevseqcmp.a i686-linux-gnu-ar cru librevseqcmp.a revseqcmp.o librevseqcmp_ssse3.a librevseqcmp_avx2.a i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib librevseqcmp.a i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqcmp.o seqcmp.c i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -msse2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqcmp_sse2_a-seqcmp_sse2.o `test -f 'seqcmp_sse2.c' || echo './'`seqcmp_sse2.c rm -f libseqcmp_sse2.a i686-linux-gnu-ar cru libseqcmp_sse2.a libseqcmp_sse2_a-seqcmp_sse2.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libseqcmp_sse2.a i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mavx2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqcmp_avx2_a-seqcmp_avx2.o `test -f 'seqcmp_avx2.c' || echo './'`seqcmp_avx2.c rm -f libseqcmp_avx2.a i686-linux-gnu-ar cru libseqcmp_avx2.a libseqcmp_avx2_a-seqcmp_avx2.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libseqcmp_avx2.a i686-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mavx512bw -mavx512vl -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqcmp_avx512_a-seqcmp_avx512.o `test -f 'seqcmp_avx512.c' || echo './'`seqcmp_avx512.c rm -f libseqcmp_avx512.a i686-linux-gnu-ar cru libseqcmp_avx512.a libseqcmp_avx512_a-seqcmp_avx512.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libseqcmp_avx512.a rm -f libseqcmp.a i686-linux-gnu-ar cru libseqcmp.a seqcmp.o libseqcmp_sse2.a libseqcmp_avx2.a libseqcmp_avx512.a i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') i686-linux-gnu-ranlib libseqcmp.a make[3]: Leaving directory '/<>/libs' Making all in src make[3]: Entering directory '/<>/src' i686-linux-gnu-g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -fopenmp -Wall -Wextra -I../libs -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -O2 -ggdb -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylonium-phylonium.o `test -f 'phylonium.cxx' || echo './'`phylonium.cxx i686-linux-gnu-g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -fopenmp -Wall -Wextra -I../libs -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -O2 -ggdb -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylonium-io.o `test -f 'io.cxx' || echo './'`io.cxx i686-linux-gnu-g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -fopenmp -Wall -Wextra -I../libs -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -O2 -ggdb -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylonium-sequence.o `test -f 'sequence.cxx' || echo './'`sequence.cxx sequence.cxx: In constructor ‘sequence::sequence(std::string, std::string)’: sequence.cxx:37:47: warning: left shift count >= width of type [-Wshift-count-overflow] 37 | const size_t LENGTH_LIMIT = (size_t)1 << (sizeof(saidx64_t) * CHAR_BIT - 2); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -fopenmp -Wall -Wextra -I../libs -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -O2 -ggdb -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylonium-esa.o `test -f 'esa.cxx' || echo './'`esa.cxx i686-linux-gnu-g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -fopenmp -Wall -Wextra -I../libs -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -O2 -ggdb -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylonium-process.o `test -f 'process.cxx' || echo './'`process.cxx process.cxx: In lambda function: process.cxx:222:39: error: no matching function for call to ‘max(saidx64_t&, long int)’ 222 | this_length = std::max(inter.l, 0l); | ~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/12/vector:60, from process.h:8, from process.cxx:6: /usr/i686-linux-gnu/include/c++/12/bits/stl_algobase.h:254:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&)’ 254 | max(const _Tp& __a, const _Tp& __b) | ^~~ /usr/i686-linux-gnu/include/c++/12/bits/stl_algobase.h:254:5: note: template argument deduction/substitution failed: process.cxx:222:39: note: deduced conflicting types for parameter ‘const _Tp’ (‘long long int’ and ‘long int’) 222 | this_length = std::max(inter.l, 0l); | ~~~~~~~~^~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/12/bits/stl_algobase.h:300:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 300 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/i686-linux-gnu/include/c++/12/bits/stl_algobase.h:300:5: note: template argument deduction/substitution failed: process.cxx:222:39: note: deduced conflicting types for parameter ‘const _Tp’ (‘long long int’ and ‘long int’) 222 | this_length = std::max(inter.l, 0l); | ~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/12/algorithm:61, from evo_model.h:7, from process.h:9: /usr/i686-linux-gnu/include/c++/12/bits/stl_algo.h:5746:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>)’ 5746 | max(initializer_list<_Tp> __l) | ^~~ /usr/i686-linux-gnu/include/c++/12/bits/stl_algo.h:5746:5: note: template argument deduction/substitution failed: process.cxx:222:39: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long long int’ 222 | this_length = std::max(inter.l, 0l); | ~~~~~~~~^~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/12/bits/stl_algo.h:5756:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>, _Compare)’ 5756 | max(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/i686-linux-gnu/include/c++/12/bits/stl_algo.h:5756:5: note: template argument deduction/substitution failed: process.cxx:222:39: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long long int’ 222 | this_length = std::max(inter.l, 0l); | ~~~~~~~~^~~~~~~~~~~~~ make[3]: *** [Makefile:480: phylonium-process.o] Error 1 make[3]: Leaving directory '/<>/src' make[2]: *** [Makefile:648: all-recursive] Error 1 make[2]: Leaving directory '/<>' make[1]: *** [Makefile:522: all] Error 2 make[1]: Leaving directory '/<>' dh_auto_build: error: make -j1 returned exit code 2 make: *** [debian/rules:15: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2023-07-09T20:13:23Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 47796 Build-Time: 54 Distribution: unstable Fail-Stage: build Foreign Architectures: i386 Host Architecture: i386 Install-Time: 47 Job: phylonium_1.7-1 Machine Architecture: arm64 Package: phylonium Package-Time: 138 Source-Version: 1.7-1 Space: 47796 Status: attempted Version: 1.7-1 -------------------------------------------------------------------------------- Finished at 2023-07-09T20:13:23Z Build needed 00:02:18, 47796k disk space