sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | phyml 3:3.3.20180621-2 (armel) Wed, 12 Jun 2019 23:20:23 +0000 | +==============================================================================+ Package: phyml Version: 3:3.3.20180621-2 Source Version: 3:3.3.20180621-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-1d5d287e-f1cb-4226-95ed-818dc74bdbb5' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [210 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-12-0814.19.pdiff [1084 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-12-1419.15.pdiff [1681 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-12-2019.45.pdiff [4973 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-12-2019.45.pdiff [4973 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-12-0814.19.pdiff [306 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-12-1419.15.pdiff [1540 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-12-2019.45.pdiff [4061 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-12-2019.45.pdiff [4061 B] Get:10 http://debian.oregonstate.edu/debian unstable/main armel Packages [8006 kB] Fetched 8286 kB in 2s (4290 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'phyml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/phyml.git Please use: git clone https://salsa.debian.org/med-team/phyml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2325 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main phyml 3:3.3.20180621-2 (dsc) [2064 B] Get:2 http://debian.oregonstate.edu/debian unstable/main phyml 3:3.3.20180621-2 (tar) [2306 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main phyml 3:3.3.20180621-2 (diff) [16.9 kB] Fetched 2325 kB in 0s (40.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/phyml-TdISXC/phyml-3.3.20180621' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-TdISXC' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-0HDpYu/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-0HDpYu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0HDpYu/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-0HDpYu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0HDpYu/apt_archive ./ Sources [359 B] Get:5 copy:/<>/resolver-0HDpYu/apt_archive ./ Packages [450 B] Fetched 1766 B in 0s (94.2 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libmpx2-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabi gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sbuild-build-depends-core-dummy:armel sensible-utils ucf 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 154 MB of additional disk space will be used. Get:1 copy:/<>/resolver-0HDpYu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.31.1-16 [2832 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi-base amd64 8.3.0-7cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabi amd64 8.3.0-7cross1 [6545 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.28-10cross2 [1190 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:8.3.0-7cross1 [38.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 8.3.0-7cross1 [65.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 8.3.0-7cross1 [8812 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 8.3.0-7cross1 [288 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 8.3.0-7cross1 [311 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 8.3.0-7cross1 [102 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armel-cross all 8.3.0-7cross1 [601 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi amd64 8.3.0-7cross1 [6970 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:8.3.0-1 [1460 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 4.19.28-2cross2 [1228 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.28-10cross2 [2184 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armel-cross all 8.3.0-7cross1 [1543 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabi amd64 8.3.0-7cross1 [7123 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:8.3.0-1 [1176 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.6 [6568 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 1s (60.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11954 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-arm-linux-gnueabi. Preparing to unpack .../06-binutils-arm-linux-gnueabi_2.31.1-16_amd64.deb ... Unpacking binutils-arm-linux-gnueabi (2.31.1-16) ... Selecting previously unselected package gcc-8-arm-linux-gnueabi-base:amd64. Preparing to unpack .../07-gcc-8-arm-linux-gnueabi-base_8.3.0-7cross1_amd64.deb ... Unpacking gcc-8-arm-linux-gnueabi-base:amd64 (8.3.0-7cross1) ... Selecting previously unselected package cpp-8-arm-linux-gnueabi. Preparing to unpack .../08-cpp-8-arm-linux-gnueabi_8.3.0-7cross1_amd64.deb ... Unpacking cpp-8-arm-linux-gnueabi (8.3.0-7cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabi. Preparing to unpack .../09-cpp-arm-linux-gnueabi_4%3a8.3.0-1_amd64.deb ... Unpacking cpp-arm-linux-gnueabi (4:8.3.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-8-cross-base. Preparing to unpack .../11-gcc-8-cross-base_8.3.0-7cross1_all.deb ... Unpacking gcc-8-cross-base (8.3.0-7cross1) ... Selecting previously unselected package libc6-armel-cross. Preparing to unpack .../12-libc6-armel-cross_2.28-10cross2_all.deb ... Unpacking libc6-armel-cross (2.28-10cross2) ... Selecting previously unselected package libgcc1-armel-cross. Preparing to unpack .../13-libgcc1-armel-cross_1%3a8.3.0-7cross1_all.deb ... Unpacking libgcc1-armel-cross (1:8.3.0-7cross1) ... Selecting previously unselected package libgomp1-armel-cross. Preparing to unpack .../14-libgomp1-armel-cross_8.3.0-7cross1_all.deb ... Unpacking libgomp1-armel-cross (8.3.0-7cross1) ... Selecting previously unselected package libatomic1-armel-cross. Preparing to unpack .../15-libatomic1-armel-cross_8.3.0-7cross1_all.deb ... Unpacking libatomic1-armel-cross (8.3.0-7cross1) ... Selecting previously unselected package libstdc++6-armel-cross. Preparing to unpack .../16-libstdc++6-armel-cross_8.3.0-7cross1_all.deb ... Unpacking libstdc++6-armel-cross (8.3.0-7cross1) ... Selecting previously unselected package libasan5-armel-cross. Preparing to unpack .../17-libasan5-armel-cross_8.3.0-7cross1_all.deb ... Unpacking libasan5-armel-cross (8.3.0-7cross1) ... Selecting previously unselected package libubsan1-armel-cross. Preparing to unpack .../18-libubsan1-armel-cross_8.3.0-7cross1_all.deb ... Unpacking libubsan1-armel-cross (8.3.0-7cross1) ... Selecting previously unselected package libgcc-8-dev-armel-cross. Preparing to unpack .../19-libgcc-8-dev-armel-cross_8.3.0-7cross1_all.deb ... Unpacking libgcc-8-dev-armel-cross (8.3.0-7cross1) ... Selecting previously unselected package gcc-8-arm-linux-gnueabi. Preparing to unpack .../20-gcc-8-arm-linux-gnueabi_8.3.0-7cross1_amd64.deb ... Unpacking gcc-8-arm-linux-gnueabi (8.3.0-7cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabi. Preparing to unpack .../21-gcc-arm-linux-gnueabi_4%3a8.3.0-1_amd64.deb ... Unpacking gcc-arm-linux-gnueabi (4:8.3.0-1) ... Selecting previously unselected package linux-libc-dev-armel-cross. Preparing to unpack .../22-linux-libc-dev-armel-cross_4.19.28-2cross2_all.deb ... Unpacking linux-libc-dev-armel-cross (4.19.28-2cross2) ... Selecting previously unselected package libc6-dev-armel-cross. Preparing to unpack .../23-libc6-dev-armel-cross_2.28-10cross2_all.deb ... Unpacking libc6-dev-armel-cross (2.28-10cross2) ... Selecting previously unselected package libstdc++-8-dev-armel-cross. Preparing to unpack .../24-libstdc++-8-dev-armel-cross_8.3.0-7cross1_all.deb ... Unpacking libstdc++-8-dev-armel-cross (8.3.0-7cross1) ... Selecting previously unselected package g++-8-arm-linux-gnueabi. Preparing to unpack .../25-g++-8-arm-linux-gnueabi_8.3.0-7cross1_amd64.deb ... Unpacking g++-8-arm-linux-gnueabi (8.3.0-7cross1) ... Selecting previously unselected package g++-arm-linux-gnueabi. Preparing to unpack .../26-g++-arm-linux-gnueabi_4%3a8.3.0-1_amd64.deb ... Unpacking g++-arm-linux-gnueabi (4:8.3.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../27-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../28-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../29-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../30-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../31-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../32-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../33-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../34-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../35-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../36-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../37-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../38-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../39-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../40-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../41-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../42-crossbuild-essential-armel_12.6_all.deb ... Unpacking crossbuild-essential-armel (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:armel. Preparing to unpack .../43-sbuild-build-depends-core-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-arm-linux-gnueabi (2.31.1-16) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-arm-linux-gnueabi-base:amd64 (8.3.0-7cross1) ... Setting up gcc-8-cross-base (8.3.0-7cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up cpp-8-arm-linux-gnueabi (8.3.0-7cross1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up linux-libc-dev-armel-cross (4.19.28-2cross2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up cpp-arm-linux-gnueabi (4:8.3.0-1) ... Setting up libc6-armel-cross (2.28-10cross2) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-armel-cross (2.28-10cross2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgomp1-armel-cross (8.3.0-7cross1) ... Setting up libatomic1-armel-cross (8.3.0-7cross1) ... Setting up libgcc1-armel-cross (1:8.3.0-7cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-armel-cross (8.3.0-7cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armel-cross (8.3.0-7cross1) ... Setting up libubsan1-armel-cross (8.3.0-7cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-armel-cross (8.3.0-7cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-8-arm-linux-gnueabi (8.3.0-7cross1) ... Setting up libstdc++-8-dev-armel-cross (8.3.0-7cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-arm-linux-gnueabi (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-8-arm-linux-gnueabi (8.3.0-7cross1) ... Setting up g++-arm-linux-gnueabi (4:8.3.0-1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.6) ... Setting up sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-0HDpYu/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-0HDpYu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0HDpYu/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-0HDpYu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0HDpYu/apt_archive ./ Sources [481 B] Get:5 copy:/<>/resolver-0HDpYu/apt_archive ./ Packages [570 B] Fetched 2014 B in 0s (111 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-0HDpYu/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armel. (Reading database ... 15002 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), pkg-config, libopenmpi-dev, chrpath Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), pkg-config, libopenmpi-dev, chrpath dpkg-deb: building package 'sbuild-build-depends-phyml-dummy' in '/<>/resolver-0HDpYu/apt_archive/sbuild-build-depends-phyml-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-phyml-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-0HDpYu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0HDpYu/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-0HDpYu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0HDpYu/apt_archive ./ Sources [653 B] Get:5 copy:/<>/resolver-0HDpYu/apt_archive ./ Packages [738 B] Fetched 2354 B in 0s (121 kB/s) Reading package lists... Reading package lists... Install phyml build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gettext gettext-base groff-base ibverbs-providers:armel intltool-debian libarchive-zip-perl libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcroco3 libedit2 libelf1 libevent-2.1-6:armel libevent-core-2.1-6:armel libevent-pthreads-2.1-6:armel libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libgfortran5:armel libglib2.0-0 libgomp1:armel libgssapi-krb5-2 libhwloc-dev:armel libhwloc-plugins:armel libhwloc5:armel libibverbs-dev:armel libibverbs1:armel libicu63:armel libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev:armel libltdl7:armel liblzma5:armel libncurses6 libnl-3-200:armel libnl-3-dev:armel libnl-route-3-200:armel libnl-route-3-dev:armel libopenmpi-dev:armel libopenmpi3:armel libpciaccess0:armel libpipeline1 libpmix2:armel libsigsegv2 libssl1.1 libstdc++-8-dev:armel libstdc++6:armel libtool libubsan1:armel libuchardet0 libxml2:armel linux-libc-dev:armel m4 man-db ocl-icd-libopencl1:armel openmpi-bin:armel openmpi-common openssh-client pkg-config po-debconf zlib1g:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel krb5-doc krb5-user libhwloc-contrib-plugins:armel libtool-doc:armel openmpi-doc:armel pciutils:armel libstdc++-8-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd:armel gfortran:armel | fortran-compiler:armel keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev:armel libltdl-dev xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gettext gettext-base groff-base ibverbs-providers:armel intltool-debian libarchive-zip-perl libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcroco3 libedit2 libelf1 libevent-2.1-6:armel libevent-core-2.1-6:armel libevent-pthreads-2.1-6:armel libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libgfortran5:armel libglib2.0-0 libgomp1:armel libgssapi-krb5-2 libhwloc-dev:armel libhwloc-plugins:armel libhwloc5:armel libibverbs-dev:armel libibverbs1:armel libicu63:armel libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev:armel libltdl7:armel liblzma5:armel libncurses6 libnl-3-200:armel libnl-3-dev:armel libnl-route-3-200:armel libnl-route-3-dev:armel libopenmpi-dev:armel libopenmpi3:armel libpciaccess0:armel libpipeline1 libpmix2:armel libsigsegv2 libssl1.1 libstdc++-8-dev:armel libstdc++6:armel libtool libubsan1:armel libuchardet0 libxml2:armel linux-libc-dev:armel m4 man-db ocl-icd-libopencl1:armel openmpi-bin:armel openmpi-common openssh-client pkg-config po-debconf sbuild-build-depends-phyml-dummy:armel zlib1g:armel 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 36.2 MB of archives. After this operation, 148 MB of additional disk space will be used. Get:1 copy:/<>/resolver-0HDpYu/apt_archive ./ sbuild-build-depends-phyml-dummy 0.invalid.0 [900 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-2 [65.6 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-2 [121 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-2 [368 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-2 [158 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 openssh-client amd64 1:7.9p1-10 [782 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-2 [1259 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main armel gcc-8-base armel 8.3.0-7 [191 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:8.3.0-7 [38.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.28-10 [2399 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main armel libnl-3-200 armel 3.4.0-1 [56.0 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armel libnl-route-3-200 armel 3.4.0-1 [135 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main armel libibverbs1 armel 22.1-1 [43.8 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main armel ibverbs-providers armel 22.1-1 [20.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 8.3.0-7 [325 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 8.3.0-7 [317 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 8.3.0-7 [8948 B] Get:48 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 4.19.37-3 [1167 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.28-10 [2185 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main armel libevent-2.1-6 armel 2.1.8-stable-4 [159 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main armel libevent-core-2.1-6 armel 2.1.8-stable-4 [118 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main armel libevent-pthreads-2.1-6 armel 2.1.8-stable-4 [47.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 8.3.0-7 [67.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 8.3.0-7 [103 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main armel libgcc-8-dev armel 8.3.0-7 [604 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-1 [86.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main armel libgfortran5 armel 8.3.0-7 [216 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main armel libltdl7 armel 2.4.6-10 [387 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main armel libhwloc5 armel 1.11.12-3 [88.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main armel libltdl-dev armel 2.4.6-10 [160 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main armel libhwloc-dev armel 1.11.12-3 [153 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main armel libpciaccess0 armel 0.14-1 [50.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main armel libicu63 armel 63.2-2 [7979 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main armel liblzma5 armel 5.2.4-1 [144 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main armel libxml2 armel 2.9.4+dfsg1-7+b3 [572 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main armel ocl-icd-libopencl1 armel 2.2.12-2 [36.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main armel libhwloc-plugins armel 1.11.12-3 [17.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main armel libnl-3-dev armel 3.4.0-1 [96.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main armel libnl-route-3-dev armel 3.4.0-1 [158 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main armel libibverbs-dev armel 22.1-1 [151 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main armel libpmix2 armel 3.1.2-3 [430 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main armel libopenmpi3 armel 3.1.3-11 [1828 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main armel openmpi-bin armel 3.1.3-11 [200 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main armel libopenmpi-dev armel 3.1.3-11 [963 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-8-dev armel 8.3.0-7 [1571 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.2 MB in 1s (62.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15002 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../07-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../08-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../09-libkrb5support0_1.17-2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../10-libk5crypto3_1.17-2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../11-libssl1.1_1.1.1c-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1c-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../12-libkrb5-3_1.17-2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-2) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../13-libgssapi-krb5-2_1.17-2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-2) ... Selecting previously unselected package openssh-client. Preparing to unpack .../14-openssh-client_1%3a7.9p1-10_amd64.deb ... Unpacking openssh-client (1:7.9p1-10) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../15-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package chrpath. Preparing to unpack .../21-chrpath_0.16-2+b1_amd64.deb ... Unpacking chrpath (0.16-2+b1) ... Selecting previously unselected package libtool. Preparing to unpack .../22-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../23-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../24-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../25-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../26-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../27-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../29-libglib2.0-0_2.58.3-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../30-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../31-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../32-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../33-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../34-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../35-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package gcc-8-base:armel. Preparing to unpack .../36-gcc-8-base_8.3.0-7_armel.deb ... Unpacking gcc-8-base:armel (8.3.0-7) ... Selecting previously unselected package libgcc1:armel. Preparing to unpack .../37-libgcc1_1%3a8.3.0-7_armel.deb ... Unpacking libgcc1:armel (1:8.3.0-7) ... Selecting previously unselected package libc6:armel. Preparing to unpack .../38-libc6_2.28-10_armel.deb ... Unpacking libc6:armel (2.28-10) ... Selecting previously unselected package libnl-3-200:armel. Preparing to unpack .../39-libnl-3-200_3.4.0-1_armel.deb ... Unpacking libnl-3-200:armel (3.4.0-1) ... Selecting previously unselected package libnl-route-3-200:armel. Preparing to unpack .../40-libnl-route-3-200_3.4.0-1_armel.deb ... Unpacking libnl-route-3-200:armel (3.4.0-1) ... Selecting previously unselected package libibverbs1:armel. Preparing to unpack .../41-libibverbs1_22.1-1_armel.deb ... Unpacking libibverbs1:armel (22.1-1) ... Selecting previously unselected package ibverbs-providers:armel. Preparing to unpack .../42-ibverbs-providers_22.1-1_armel.deb ... Unpacking ibverbs-providers:armel (22.1-1) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../43-libstdc++6_8.3.0-7_armel.deb ... Unpacking libstdc++6:armel (8.3.0-7) ... Selecting previously unselected package libasan5:armel. Preparing to unpack .../44-libasan5_8.3.0-7_armel.deb ... Unpacking libasan5:armel (8.3.0-7) ... Selecting previously unselected package libatomic1:armel. Preparing to unpack .../45-libatomic1_8.3.0-7_armel.deb ... Unpacking libatomic1:armel (8.3.0-7) ... Selecting previously unselected package linux-libc-dev:armel. Preparing to unpack .../46-linux-libc-dev_4.19.37-3_armel.deb ... Unpacking linux-libc-dev:armel (4.19.37-3) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../47-libc6-dev_2.28-10_armel.deb ... Unpacking libc6-dev:armel (2.28-10) ... Selecting previously unselected package libevent-2.1-6:armel. Preparing to unpack .../48-libevent-2.1-6_2.1.8-stable-4_armel.deb ... Unpacking libevent-2.1-6:armel (2.1.8-stable-4) ... Selecting previously unselected package libevent-core-2.1-6:armel. Preparing to unpack .../49-libevent-core-2.1-6_2.1.8-stable-4_armel.deb ... Unpacking libevent-core-2.1-6:armel (2.1.8-stable-4) ... Selecting previously unselected package libevent-pthreads-2.1-6:armel. Preparing to unpack .../50-libevent-pthreads-2.1-6_2.1.8-stable-4_armel.deb ... Unpacking libevent-pthreads-2.1-6:armel (2.1.8-stable-4) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../51-libgomp1_8.3.0-7_armel.deb ... Unpacking libgomp1:armel (8.3.0-7) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../52-libubsan1_8.3.0-7_armel.deb ... Unpacking libubsan1:armel (8.3.0-7) ... Selecting previously unselected package libgcc-8-dev:armel. Preparing to unpack .../53-libgcc-8-dev_8.3.0-7_armel.deb ... Unpacking libgcc-8-dev:armel (8.3.0-7) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../54-zlib1g_1%3a1.2.11.dfsg-1_armel.deb ... Unpacking zlib1g:armel (1:1.2.11.dfsg-1) ... Selecting previously unselected package libgfortran5:armel. Preparing to unpack .../55-libgfortran5_8.3.0-7_armel.deb ... Unpacking libgfortran5:armel (8.3.0-7) ... Selecting previously unselected package libltdl7:armel. Preparing to unpack .../56-libltdl7_2.4.6-10_armel.deb ... Unpacking libltdl7:armel (2.4.6-10) ... Selecting previously unselected package libhwloc5:armel. Preparing to unpack .../57-libhwloc5_1.11.12-3_armel.deb ... Unpacking libhwloc5:armel (1.11.12-3) ... Selecting previously unselected package libltdl-dev:armel. Preparing to unpack .../58-libltdl-dev_2.4.6-10_armel.deb ... Unpacking libltdl-dev:armel (2.4.6-10) ... Selecting previously unselected package libhwloc-dev:armel. Preparing to unpack .../59-libhwloc-dev_1.11.12-3_armel.deb ... Unpacking libhwloc-dev:armel (1.11.12-3) ... Selecting previously unselected package libpciaccess0:armel. Preparing to unpack .../60-libpciaccess0_0.14-1_armel.deb ... Unpacking libpciaccess0:armel (0.14-1) ... Selecting previously unselected package libicu63:armel. Preparing to unpack .../61-libicu63_63.2-2_armel.deb ... Unpacking libicu63:armel (63.2-2) ... Selecting previously unselected package liblzma5:armel. Preparing to unpack .../62-liblzma5_5.2.4-1_armel.deb ... Unpacking liblzma5:armel (5.2.4-1) ... Selecting previously unselected package libxml2:armel. Preparing to unpack .../63-libxml2_2.9.4+dfsg1-7+b3_armel.deb ... Unpacking libxml2:armel (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package ocl-icd-libopencl1:armel. Preparing to unpack .../64-ocl-icd-libopencl1_2.2.12-2_armel.deb ... Unpacking ocl-icd-libopencl1:armel (2.2.12-2) ... Selecting previously unselected package libhwloc-plugins:armel. Preparing to unpack .../65-libhwloc-plugins_1.11.12-3_armel.deb ... Unpacking libhwloc-plugins:armel (1.11.12-3) ... Selecting previously unselected package libnl-3-dev:armel. Preparing to unpack .../66-libnl-3-dev_3.4.0-1_armel.deb ... Unpacking libnl-3-dev:armel (3.4.0-1) ... Selecting previously unselected package libnl-route-3-dev:armel. Preparing to unpack .../67-libnl-route-3-dev_3.4.0-1_armel.deb ... Unpacking libnl-route-3-dev:armel (3.4.0-1) ... Selecting previously unselected package libibverbs-dev:armel. Preparing to unpack .../68-libibverbs-dev_22.1-1_armel.deb ... Unpacking libibverbs-dev:armel (22.1-1) ... Selecting previously unselected package libpmix2:armel. Preparing to unpack .../69-libpmix2_3.1.2-3_armel.deb ... Unpacking libpmix2:armel (3.1.2-3) ... Selecting previously unselected package libopenmpi3:armel. Preparing to unpack .../70-libopenmpi3_3.1.3-11_armel.deb ... Unpacking libopenmpi3:armel (3.1.3-11) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../71-openmpi-common_3.1.3-11_all.deb ... Unpacking openmpi-common (3.1.3-11) ... Selecting previously unselected package openmpi-bin:armel. Preparing to unpack .../72-openmpi-bin_3.1.3-11_armel.deb ... Unpacking openmpi-bin:armel (3.1.3-11) ... Selecting previously unselected package libopenmpi-dev:armel. Preparing to unpack .../73-libopenmpi-dev_3.1.3-11_armel.deb ... Unpacking libopenmpi-dev:armel (3.1.3-11) ... Selecting previously unselected package libstdc++-8-dev:armel. Preparing to unpack .../74-libstdc++-8-dev_8.3.0-7_armel.deb ... Unpacking libstdc++-8-dev:armel (8.3.0-7) ... Selecting previously unselected package pkg-config. Preparing to unpack .../75-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package sbuild-build-depends-phyml-dummy:armel. Preparing to unpack .../76-sbuild-build-depends-phyml-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-phyml-dummy:armel (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1c-1) ... Setting up linux-libc-dev:armel (4.19.37-3) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libkrb5support0:amd64 (1.17-2) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:armel (8.3.0-7) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up libk5crypto3:amd64 (1.17-2) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up openmpi-common (3.1.3-11) ... Setting up libkrb5-3:amd64 (1.17-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up chrpath (0.16-2+b1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-2) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up openssh-client (1:7.9p1-10) ... Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:armel (2.28-10) ... Setting up ocl-icd-libopencl1:armel (2.2.12-2) ... Setting up libnl-3-200:armel (3.4.0-1) ... Setting up libc6-dev:armel (2.28-10) ... Setting up liblzma5:armel (5.2.4-1) ... Setting up libgcc1:armel (1:8.3.0-7) ... Setting up zlib1g:armel (1:1.2.11.dfsg-1) ... Setting up libgomp1:armel (8.3.0-7) ... Setting up libnl-route-3-200:armel (3.4.0-1) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:armel (8.3.0-7) ... Setting up libltdl7:armel (2.4.6-10) ... Setting up libevent-core-2.1-6:armel (2.1.8-stable-4) ... Setting up libgfortran5:armel (8.3.0-7) ... Setting up libevent-2.1-6:armel (2.1.8-stable-4) ... Setting up libnl-3-dev:armel (3.4.0-1) ... Setting up libstdc++6:armel (8.3.0-7) ... Setting up libevent-pthreads-2.1-6:armel (2.1.8-stable-4) ... Setting up libpciaccess0:armel (0.14-1) ... Setting up libibverbs1:armel (22.1-1) ... Setting up ibverbs-providers:armel (22.1-1) ... Setting up libhwloc5:armel (1.11.12-3) ... Setting up debhelper (12.1.1) ... Setting up libicu63:armel (63.2-2) ... Setting up libnl-route-3-dev:armel (3.4.0-1) ... Setting up libltdl-dev:armel (2.4.6-10) ... Setting up libasan5:armel (8.3.0-7) ... Setting up libubsan1:armel (8.3.0-7) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libhwloc-dev:armel (1.11.12-3) ... Setting up libxml2:armel (2.9.4+dfsg1-7+b3) ... Setting up libibverbs-dev:armel (22.1-1) ... Setting up libhwloc-plugins:armel (1.11.12-3) ... Setting up libgcc-8-dev:armel (8.3.0-7) ... Setting up libstdc++-8-dev:armel (8.3.0-7) ... Setting up libpmix2:armel (3.1.2-3) ... Setting up libopenmpi3:armel (3.1.3-11) ... Setting up openmpi-bin:armel (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:armel (3.1.3-11) ... update-alternatives: using /usr/lib/arm-linux-gnueabi/openmpi/include to provide /usr/include/arm-linux-gnueabi/mpi (mpi-arm-linux-gnueabi) in auto mode Setting up sbuild-build-depends-phyml-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.7 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-armel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-armel-cross_8.3.0-7cross1 linux-libc-dev_4.19.37-3 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-arm-linux-gnueabi_2.31.1-16 binutils-common_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 chrpath_0.16-2+b1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-arm-linux-gnueabi_8.3.0-7cross1 cpp-arm-linux-gnueabi_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-armel_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12-3 e2fsprogs_1.45.2-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-arm-linux-gnueabi_8.3.0-7cross1 g++-arm-linux-gnueabi_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-arm-linux-gnueabi_8.3.0-7cross1 gcc-8-arm-linux-gnueabi-base_8.3.0-7cross1 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-arm-linux-gnueabi_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-2 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 ibverbs-providers_22.1-1 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_8.3.0-7 libasan5-armel-cross_8.3.0-7cross1 libatomic1_8.3.0-7 libatomic1-armel-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-armel-cross_2.28-10cross2 libc6-dev_2.28-10 libc6-dev-armel-cross_2.28-10cross2 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-7 libcom-err2_1.45.2-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libedit2_3.1-20181209-1 libelf1_0.176-1.1 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libext2fs2_1.45.2-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-7 libgcc-8-dev-armel-cross_8.3.0-7cross1 libgcc1_1:8.3.0-7 libgcc1-armel-cross_1:8.3.0-7cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgfortran5_8.3.0-7 libglib2.0-0_2.58.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-3 libgomp1_8.3.0-7 libgomp1-armel-cross_8.3.0-7cross1 libgpg-error0_1.35-1 libgssapi-krb5-2_1.17-2 libhogweed4_3.4.1-1 libhwloc-dev_1.11.12-3 libhwloc-plugins_1.11.12-3 libhwloc5_1.11.12-3 libibverbs-dev_22.1-1 libibverbs1_22.1-1 libicu63_63.2-2 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-7 libk5crypto3_1.17-2 libkeyutils1_1.6-6 libkrb5-3_1.17-2 libkrb5support0_1.17-2 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-7 libltdl-dev_2.4.6-10 libltdl7_2.4.6-10 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-7 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libopenmpi-dev_3.1.3-11 libopenmpi3_3.1.3-11 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpmix2_3.1.2-3 libquadmath0_8.3.0-7 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.2-1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-armel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-armel-cross_8.3.0-7cross1 libsystemd0_241-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libubsan1_8.3.0-7 libubsan1-armel-cross_8.3.0-7cross1 libuchardet0_0.0.6-3 libudev1_241-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-3 linux-libc-dev-armel-cross_4.19.28-2cross2 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 ocl-icd-libopencl1_2.2.12-2 openmpi-bin_3.1.3-11 openmpi-common_3.1.3-11 openssh-client_1:7.9p1-10 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-phyml-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jun 27 16:29:16 2018 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./phyml_3.3.20180621-2.dsc dpkg-source: info: extracting phyml in /<> dpkg-source: info: unpacking phyml_3.3.20180621.orig.tar.gz dpkg-source: info: unpacking phyml_3.3.20180621-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sse_only_if_supported.patch dpkg-source: info: applying no-stdc++.patch dpkg-source: info: applying no-configure-ac-date.patch dpkg-source: info: applying fix_declaration_of_temp.patch dpkg-source: info: applying fix_wrong_initialisation_of_array.patch dpkg-source: info: applying no-march-native.patch dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-1d5d287e-f1cb-4226-95ed-818dc74bdbb5 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package phyml dpkg-buildpackage: info: source version 3:3.3.20180621-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Graham Inggs dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # save pdf from cleaning mv doc/phyml-manual.pdf . dh_auto_clean mv phyml-manual.pdf doc # remove temporary bin dir for phyml (see above hack) rm -rf debian/bin make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' dh_autoreconf --as-needed make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # According to README you need different configure options to get different executables # Here we hack in a full build process for phyml executable # The hack includes saving the documentation from beeing cleaned up mv doc/phyml-manual.pdf . dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --libexecdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabi checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabi-gcc... none checking dependency style of arm-linux-gnueabi-gcc... (cached) none configure: "Do not use MSSE = because not available on arch arm-unknown-linux-gnueabi" checking for log in -lm... yes checking how to run the C preprocessor... arm-linux-gnueabi-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for arm-linux-gnueabi-pkg-config... /usr/bin/arm-linux-gnueabi-pkg-config checking pkg-config is at least version 0.9.0... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml]. Version 3.3.3:3.3.20180621-2 :. arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o main.o main.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o utilities.o utilities.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o optimiz.o optimiz.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o lk.o lk.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o bionj.o bionj.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o models.o models.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o free.o free.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o help.o help.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o simu.o simu.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o eigen.o eigen.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o pars.o pars.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o alrt.o alrt.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o interface.o interface.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o cl.o cl.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o spr.o spr.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o draw.o draw.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o stats.o stats.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o rates.o rates.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o mcmc.o mcmc.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o times.o times.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o tiporder.o tiporder.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o m4.o m4.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o io.o io.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o make.o make.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o nexus.o nexus.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o init.o init.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o xml.o xml.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o date.o date.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o sse.o sse.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o avx.o avx.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o tbe.o tbe.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o mixt.o mixt.c arm-linux-gnueabi-gcc -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -Wl,-z,relro -Wl,-z,now -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o rates.o mcmc.o times.o tiporder.o m4.o io.o make.o nexus.o init.o xml.o date.o sse.o avx.o tbe.o mixt.o -lm -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ mkdir -p /<>/debian/bin mv src/phyml /<>/debian/bin/phyml /usr/bin/make distclean make[2]: Entering directory '/<>' Making distclean in src make[3]: Entering directory '/<>/src' test -z "phyml" || rm -f phyml rm -f *.o rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f ./.deps/alrt.Po rm -f ./.deps/avx.Po rm -f ./.deps/beagle_utils.Po rm -f ./.deps/bionj.Po rm -f ./.deps/checkpoint.Po rm -f ./.deps/cl.Po rm -f ./.deps/date.Po rm -f ./.deps/draw.Po rm -f ./.deps/eigen.Po rm -f ./.deps/free.Po rm -f ./.deps/geo.Po rm -f ./.deps/help.Po rm -f ./.deps/init.Po rm -f ./.deps/interface.Po rm -f ./.deps/invitee.Po rm -f ./.deps/io.Po rm -f ./.deps/lk.Po rm -f ./.deps/m4.Po rm -f ./.deps/main.Po rm -f ./.deps/make.Po rm -f ./.deps/mcmc.Po rm -f ./.deps/mg.Po rm -f ./.deps/mixt.Po rm -f ./.deps/models.Po rm -f ./.deps/nexus.Po rm -f ./.deps/optimiz.Po rm -f ./.deps/pars.Po rm -f ./.deps/phyml_mpi-alrt.Po rm -f ./.deps/phyml_mpi-avx.Po rm -f ./.deps/phyml_mpi-bionj.Po rm -f ./.deps/phyml_mpi-cl.Po rm -f ./.deps/phyml_mpi-date.Po rm -f ./.deps/phyml_mpi-draw.Po rm -f ./.deps/phyml_mpi-eigen.Po rm -f ./.deps/phyml_mpi-free.Po rm -f ./.deps/phyml_mpi-help.Po rm -f ./.deps/phyml_mpi-init.Po rm -f ./.deps/phyml_mpi-interface.Po rm -f ./.deps/phyml_mpi-io.Po rm -f ./.deps/phyml_mpi-lk.Po rm -f ./.deps/phyml_mpi-m4.Po rm -f ./.deps/phyml_mpi-main.Po rm -f ./.deps/phyml_mpi-make.Po rm -f ./.deps/phyml_mpi-mcmc.Po rm -f ./.deps/phyml_mpi-mg.Po rm -f ./.deps/phyml_mpi-mixt.Po rm -f ./.deps/phyml_mpi-models.Po rm -f ./.deps/phyml_mpi-mpi_boot.Po rm -f ./.deps/phyml_mpi-nexus.Po rm -f ./.deps/phyml_mpi-optimiz.Po rm -f ./.deps/phyml_mpi-pars.Po rm -f ./.deps/phyml_mpi-rates.Po rm -f ./.deps/phyml_mpi-simu.Po rm -f ./.deps/phyml_mpi-spr.Po rm -f ./.deps/phyml_mpi-sse.Po rm -f ./.deps/phyml_mpi-stats.Po rm -f ./.deps/phyml_mpi-tbe.Po rm -f ./.deps/phyml_mpi-times.Po rm -f ./.deps/phyml_mpi-tiporder.Po rm -f ./.deps/phyml_mpi-utilities.Po rm -f ./.deps/phyml_mpi-xml.Po rm -f ./.deps/phyrex.Po rm -f ./.deps/rates.Po rm -f ./.deps/simu.Po rm -f ./.deps/spr.Po rm -f ./.deps/sse.Po rm -f ./.deps/stats.Po rm -f ./.deps/tbe.Po rm -f ./.deps/times.Po rm -f ./.deps/tiporder.Po rm -f ./.deps/utilities.Po rm -f ./.deps/xml.Po rm -f Makefile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f cscope.out cscope.in.out cscope.po.out cscope.files make[3]: Leaving directory '/<>' rm -f config.status config.cache config.log configure.lineno config.status.lineno rm -f Makefile make[2]: Leaving directory '/<>' dh_auto_configure -- --enable-mpi ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --libexecdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --enable-mpi configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabi checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabi-gcc... none checking dependency style of arm-linux-gnueabi-gcc... (cached) none configure: "Do not use MSSE = because not available on arch arm-unknown-linux-gnueabi" checking for log in -lm... yes checking how to run the C preprocessor... arm-linux-gnueabi-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for arm-linux-gnueabi-pkg-config... /usr/bin/arm-linux-gnueabi-pkg-config checking pkg-config is at least version 0.9.0... yes checking for MPI_C... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20180621-2 :. arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-main.o `test -f 'main.c' || echo './'`main.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-utilities.o `test -f 'utilities.c' || echo './'`utilities.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-optimiz.o `test -f 'optimiz.c' || echo './'`optimiz.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-lk.o `test -f 'lk.c' || echo './'`lk.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-bionj.o `test -f 'bionj.c' || echo './'`bionj.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-models.o `test -f 'models.c' || echo './'`models.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-free.o `test -f 'free.c' || echo './'`free.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-help.o `test -f 'help.c' || echo './'`help.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-simu.o `test -f 'simu.c' || echo './'`simu.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-eigen.o `test -f 'eigen.c' || echo './'`eigen.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-pars.o `test -f 'pars.c' || echo './'`pars.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-alrt.o `test -f 'alrt.c' || echo './'`alrt.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-interface.o `test -f 'interface.c' || echo './'`interface.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-cl.o `test -f 'cl.c' || echo './'`cl.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-spr.o `test -f 'spr.c' || echo './'`spr.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-draw.o `test -f 'draw.c' || echo './'`draw.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-stats.o `test -f 'stats.c' || echo './'`stats.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-rates.o `test -f 'rates.c' || echo './'`rates.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-mcmc.o `test -f 'mcmc.c' || echo './'`mcmc.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-times.o `test -f 'times.c' || echo './'`times.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-tiporder.o `test -f 'tiporder.c' || echo './'`tiporder.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-mg.o `test -f 'mg.c' || echo './'`mg.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-m4.o `test -f 'm4.c' || echo './'`m4.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-io.o `test -f 'io.c' || echo './'`io.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-make.o `test -f 'make.c' || echo './'`make.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-nexus.o `test -f 'nexus.c' || echo './'`nexus.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-init.o `test -f 'init.c' || echo './'`init.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-xml.o `test -f 'xml.c' || echo './'`xml.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-mixt.o `test -f 'mixt.c' || echo './'`mixt.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-tbe.o `test -f 'tbe.c' || echo './'`tbe.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-date.o `test -f 'date.c' || echo './'`date.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-sse.o `test -f 'sse.c' || echo './'`sse.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-avx.o `test -f 'avx.c' || echo './'`avx.c arm-linux-gnueabi-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-mpi_boot.o `test -f 'mpi_boot.c' || echo './'`mpi_boot.c arm-linux-gnueabi-gcc -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -Wl,-z,relro -Wl,-z,now -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-m4.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/arm-linux-gnueabi/openmpi/lib -lmpi -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ # mkdir -p /<>/debian/bin mv src/phyml-mpi /<>/debian/bin/phyml-mpi mv phyml-manual.pdf doc make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j1 install DESTDIR=/<>/debian/phyml AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20180621-2 :. arm-linux-gnueabi-gcc -pthread -I/usr/lib/arm-linux-gnueabi/openmpi/include -I/usr/lib/arm-linux-gnueabi/openmpi/include/openmpi -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-m4.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/arm-linux-gnueabi/openmpi/lib -lmpi -lm Done. make[4]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/phyml/usr/bin' /usr/bin/install -c phyml-mpi '/<>/debian/phyml/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # install phyml binary we have kept safe above mkdir -p /<>/debian/phyml/usr/lib/phyml/bin mv /<>/debian/bin/* /<>/debian/phyml/usr/lib/phyml/bin chrpath --delete debian/phyml/usr/lib/phyml/bin/phyml* make[1]: Leaving directory '/<>' dh_install -a debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs mv /<>/debian/phyml/usr/share/doc/phyml/phyml-manual.pdf /<>/debian/phyml/usr/share/doc/phyml/phyml_manual.pdf make[1]: Leaving directory '/<>' dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/*/usr/share/doc -name "*.nxs" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.xml" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.mat" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.txt" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'phyml' in '../phyml_3.3.20180621-2_armel.deb'. dpkg-deb: building package 'phyml-dbgsym' in '../phyml-dbgsym_3.3.20180621-2_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../phyml_3.3.20180621-2_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-06-12T23:22:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-0HDpYu/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-phyml-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-0HDpYu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0HDpYu/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-0HDpYu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0HDpYu/apt_archive ./ Sources [773 B] Get:5 copy:/<>/resolver-0HDpYu/apt_archive ./ Packages [854 B] Fetched 2590 B in 0s (218 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armel t1utils 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 6238 kB of archives. After this operation, 16.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-0HDpYu/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-2 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-3 [641 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-2 [866 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.15.0 [1181 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6238 kB in 0s (28.8 MB/s) Selecting previously unselected package netbase. (Reading database ... 19503 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.13-2_amd64.deb ... Unpacking gpgconf (2.2.13-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.27.2-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-3) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.13-2_amd64.deb ... Unpacking gpg (2.2.13-2) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.34+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.34+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../09-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../10-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../11-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../12-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../13-libcgi-pm-perl_4.40-1_all.deb ... Unpacking libcgi-pm-perl (4.40-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../14-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../15-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../16-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../17-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../18-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../19-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../20-libnet-ssleay-perl_1.85-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.85-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../21-libio-socket-ssl-perl_2.060-3_all.deb ... Unpacking libio-socket-ssl-perl (2.060-3) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../22-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../23-libmailtools-perl_2.18-1_all.deb ... Unpacking libmailtools-perl (2.18-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../24-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../25-libnet-dns-perl_1.19-1_all.deb ... Unpacking libnet-dns-perl (1.19-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../26-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../27-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../28-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../29-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../30-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../31-libfuture-perl_0.39-1_all.deb ... Unpacking libfuture-perl (0.39-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../32-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../33-libio-async-perl_0.72-1_all.deb ... Unpacking libio-async-perl (0.72-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../34-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../35-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../36-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../37-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../38-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../39-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../40-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../41-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../42-libyaml-libyaml-perl_0.76+repack-1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.76+repack-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../43-patchutils_0.3.4-2_amd64.deb ... Unpacking patchutils (0.3.4-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../44-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../45-lintian_2.15.0_all.deb ... Unpacking lintian (2.15.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:armel. Preparing to unpack .../46-sbuild-build-depends-lintian-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.34+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libsqlite3-0:amd64 (3.27.2-3) ... Setting up libfuture-perl (0.39-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libio-async-perl (0.72-1) ... Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up netbase (5.6) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (7.0-5) ... Setting up liburi-perl (1.76-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.13-2) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.13-2) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.15.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-10) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ phyml_3.3.20180621-2_armel.changes: ----------------------------------- Format: 1.8 Date: Wed, 27 Jun 2018 16:24:13 +0000 Source: phyml Binary: phyml phyml-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 3:3.3.20180621-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Graham Inggs Description: phyml - Phylogenetic estimation using Maximum Likelihood Changes: phyml (3:3.3.20180621-2) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * Install test script to user documentation . [ Graham Inggs ] * Allow MPI oversubscription in autopkgtests Checksums-Sha1: 747c7915acdcda38fec20ad0d4a73d2fabc78343 39356 phyml-dbgsym_3.3.20180621-2_armel.deb 15a8a5c3b40b3c6ea964a86bc16444db51144104 5556 phyml_3.3.20180621-2_armel.buildinfo c9563f9c99b498fc34410805093e781eade18714 1550204 phyml_3.3.20180621-2_armel.deb Checksums-Sha256: e5fcc5178f10d65d0b236b02b51eede5ef01e9860c24c7fa7171a6efb85cb5a3 39356 phyml-dbgsym_3.3.20180621-2_armel.deb 20ce55575c27445f4b1a06cb650fb04f418607902628f858c8d4456b13ecb43e 5556 phyml_3.3.20180621-2_armel.buildinfo b3e51ebd67ee310721514ad1d203000209bc0571ab1c8611d86586484dcab959 1550204 phyml_3.3.20180621-2_armel.deb Files: 460b656c79b8807eb0514d874ed2bde1 39356 debug optional phyml-dbgsym_3.3.20180621-2_armel.deb 60bb2950a1043f1a86eefb00b72ed913 5556 science optional phyml_3.3.20180621-2_armel.buildinfo 26025f97300e37c9a140668686abd61e 1550204 science optional phyml_3.3.20180621-2_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: phyml Binary: phyml Architecture: armel Version: 3:3.3.20180621-2 Checksums-Md5: 460b656c79b8807eb0514d874ed2bde1 39356 phyml-dbgsym_3.3.20180621-2_armel.deb 26025f97300e37c9a140668686abd61e 1550204 phyml_3.3.20180621-2_armel.deb Checksums-Sha1: 747c7915acdcda38fec20ad0d4a73d2fabc78343 39356 phyml-dbgsym_3.3.20180621-2_armel.deb c9563f9c99b498fc34410805093e781eade18714 1550204 phyml_3.3.20180621-2_armel.deb Checksums-Sha256: e5fcc5178f10d65d0b236b02b51eede5ef01e9860c24c7fa7171a6efb85cb5a3 39356 phyml-dbgsym_3.3.20180621-2_armel.deb b3e51ebd67ee310721514ad1d203000209bc0571ab1c8611d86586484dcab959 1550204 phyml_3.3.20180621-2_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 12 Jun 2019 23:22:58 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.3), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), chrpath (= 0.16-2+b1), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-7), dash (= 0.5.10.2-5), debconf (= 1.5.72), debhelper (= 12.1.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-7), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-7), gcc-8-base (= 8.3.0-7), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), ibverbs-providers (= 22.1-1), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-7), libatomic1 (= 8.3.0-7), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-3), libaudit1 (= 1:2.8.4-3), libbinutils (= 2.31.1-16), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-7), libcom-err2 (= 1.45.2-1), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.7), libedit2 (= 3.1-20181209-1), libelf1 (= 0.176-1.1), libevent-2.1-6 (= 2.1.8-stable-4), libevent-core-2.1-6 (= 2.1.8-stable-4), libevent-pthreads-2.1-6 (= 2.1.8-stable-4), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-7), libgcc1 (= 1:8.3.0-7), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libgfortran5 (= 8.3.0-7), libglib2.0-0 (= 2.58.3-2), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 8.3.0-7), libgpg-error0 (= 1.35-1), libgssapi-krb5-2 (= 1.17-2), libhwloc-dev (= 1.11.12-3), libhwloc-plugins (= 1.11.12-3), libhwloc5 (= 1.11.12-3), libibverbs-dev (= 22.1-1), libibverbs1 (= 22.1-1), libicu63 (= 63.2-2), libisl19 (= 0.20-2), libitm1 (= 8.3.0-7), libk5crypto3 (= 1.17-2), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-2), libkrb5support0 (= 1.17-2), liblsan0 (= 8.3.0-7), libltdl-dev (= 2.4.6-10), libltdl7 (= 2.4.6-10), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-7), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libnl-3-200 (= 3.4.0-1), libnl-3-dev (= 3.4.0-1), libnl-route-3-200 (= 3.4.0-1), libnl-route-3-dev (= 3.4.0-1), libopenmpi-dev (= 3.1.3-11), libopenmpi3 (= 3.1.3-11), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpciaccess0 (= 0.14-1), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libpmix2 (= 3.1.2-3), libquadmath0 (= 8.3.0-7), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsemanage-common (= 2.8-2), libsemanage1 (= 2.8-2), libsepol1 (= 2.8-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libssl1.1 (= 1.1.1c-1), libstdc++-8-dev (= 8.3.0-7), libstdc++6 (= 8.3.0-7), libsystemd0 (= 241-5), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-7), libubsan1 (= 8.3.0-7), libuchardet0 (= 0.0.6-3), libudev1 (= 241-5), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 4.19.37-3), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), ocl-icd-libopencl1 (= 2.2.12-2), openmpi-bin (= 3.1.3-11), openmpi-common (= 3.1.3-11), openssh-client (= 1:7.9p1-10), passwd (= 1:4.5-1.1), patch (= 2.7.6-3), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), pkg-config (= 0.29-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-6), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1530116653" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ phyml-dbgsym_3.3.20180621-2_armel.deb ------------------------------------- new Debian package, version 2.0. size 39356 bytes: control archive=660 bytes. 462 bytes, 12 lines control 318 bytes, 3 lines md5sums Package: phyml-dbgsym Source: phyml Version: 3:3.3.20180621-2 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 261 Depends: phyml (= 3:3.3.20180621-2) Section: debug Priority: optional Description: debug symbols for phyml Build-Ids: 3a6c385e6f850ab937db744df04da927e69b681a d658b7f1c0f7235d4aa6b9f92b48e1d238b18c2d e44f571cc5863991a307ecd410094632b8162df1 drwxr-xr-x root/root 0 2018-06-27 16:24 ./ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/lib/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/lib/debug/.build-id/3a/ -rw-r--r-- root/root 84904 2018-06-27 16:24 ./usr/lib/debug/.build-id/3a/6c385e6f850ab937db744df04da927e69b681a.debug drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/lib/debug/.build-id/d6/ -rw-r--r-- root/root 84092 2018-06-27 16:24 ./usr/lib/debug/.build-id/d6/58b7f1c0f7235d4aa6b9f92b48e1d238b18c2d.debug drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/lib/debug/.build-id/e4/ -rw-r--r-- root/root 84904 2018-06-27 16:24 ./usr/lib/debug/.build-id/e4/4f571cc5863991a307ecd410094632b8162df1.debug drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-06-27 16:24 ./usr/share/doc/phyml-dbgsym -> phyml phyml_3.3.20180621-2_armel.deb ------------------------------ new Debian package, version 2.0. size 1550204 bytes: control archive=1888 bytes. 1666 bytes, 31 lines control 1710 bytes, 24 lines md5sums Package: phyml Version: 3:3.3.20180621-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 4714 Depends: libc6 (>= 2.7), libopenmpi3, openmpi-bin Section: science Priority: optional Homepage: http://www.atgc-montpellier.fr/phyml Description: Phylogenetic estimation using Maximum Likelihood PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). . PhyML was designed to process moderate to large data sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long can be analyzed. In practice however, the amount of memory required to process a data set is proportional of the product of the number of sequences by their length. Hence, a large number of sequences can only be processed provided that they are short. Also, PhyML can handle long sequences provided that they are not numerous. With most standard personal computers, the “comfort zone” for PhyML generally lies around 3 to 500 sequences less than 2,000 character long. . This package also includes PhyTime. drwxr-xr-x root/root 0 2018-06-27 16:24 ./ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/bin/ -rwxr-xr-x root/root 579 2018-06-27 13:21 ./usr/bin/phyml -rwxr-xr-x root/root 1260924 2018-06-27 16:24 ./usr/bin/phyml-mpi drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/lib/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/lib/phyml/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/lib/phyml/bin/ -rwxr-xr-x root/root 1252288 2018-06-27 16:24 ./usr/lib/phyml/bin/phyml -rwxr-xr-x root/root 1264576 2018-06-27 16:24 ./usr/lib/phyml/bin/phyml-mpi drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/doc-base/ -rw-r--r-- root/root 202 2018-06-27 13:21 ./usr/share/doc-base/phyml drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/doc/phyml/ -rw-r--r-- root/root 2446 2018-06-27 13:21 ./usr/share/doc/phyml/README.Debian -rw-r--r-- root/root 2930 2018-06-27 16:24 ./usr/share/doc/phyml/changelog.Debian.gz -rw-r--r-- root/root 1489 2018-06-27 13:21 ./usr/share/doc/phyml/copyright drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/doc/phyml/examples/ -rw-r--r-- root/root 5082 2018-06-27 13:21 ./usr/share/doc/phyml/examples/example.nex.gz drwxr-xr-x root/root 0 2018-06-21 14:17 ./usr/share/doc/phyml/examples/lg4x/ -rw-r--r-- root/root 1900 2018-06-21 14:17 ./usr/share/doc/phyml/examples/lg4x/X1.mat -rw-r--r-- root/root 1899 2018-06-21 14:17 ./usr/share/doc/phyml/examples/lg4x/X2.mat -rw-r--r-- root/root 1893 2018-06-21 14:17 ./usr/share/doc/phyml/examples/lg4x/X3.mat -rw-r--r-- root/root 1895 2018-06-21 14:17 ./usr/share/doc/phyml/examples/lg4x/X4.mat -rw-r--r-- root/root 1994 2018-06-21 14:17 ./usr/share/doc/phyml/examples/lg4x/lg4x.xml -rw-r--r-- root/root 2175 2018-06-21 14:17 ./usr/share/doc/phyml/examples/nexus_example.nxs -rw-r--r-- root/root 3543 2018-06-21 14:17 ./usr/share/doc/phyml/examples/nucleic.gz drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/doc/phyml/examples/phyrex/ -rw-r--r-- root/root 4107 2018-06-21 14:17 ./usr/share/doc/phyml/examples/phyrex/h1n1.nxs.gz -rw-r--r-- root/root 1784 2018-06-21 14:17 ./usr/share/doc/phyml/examples/phyrex/usa_coord.txt drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/doc/phyml/examples/phytime/ -rw-r--r-- root/root 2189 2018-06-21 14:17 ./usr/share/doc/phyml/examples/phytime/dating_example.xml -rw-r--r-- root/root 13297 2018-06-21 14:17 ./usr/share/doc/phyml/examples/phytime/seq.txt.gz -rw-r--r-- root/root 5114 2018-06-21 14:17 ./usr/share/doc/phyml/examples/proteic.gz -rw-r--r-- root/root 963957 2018-06-21 14:17 ./usr/share/doc/phyml/phyml_manual.pdf -rw-r--r-- root/root 1046 2018-06-27 13:21 ./usr/share/doc/phyml/run-unit-test drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/man/ drwxr-xr-x root/root 0 2018-06-27 16:24 ./usr/share/man/man1/ -rw-r--r-- root/root 2899 2018-06-27 16:24 ./usr/share/man/man1/phyml.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 17316 Build-Time: 117 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 29 Job: phyml_3:3.3.20180621-2 Lintian: pass Machine Architecture: amd64 Package: phyml Package-Time: 156 Source-Version: 3:3.3.20180621-2 Space: 17316 Status: successful Version: 3:3.3.20180621-2 -------------------------------------------------------------------------------- Finished at 2019-06-12T23:22:59Z Build needed 00:02:36, 17316k disk space