sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | phyml 3:3.3.20190321-2 (armhf) Thu, 26 Sep 2019 16:42:59 +0000 | +==============================================================================+ Package: phyml Version: 3:3.3.20190321-2 Source Version: 3:3.3.20190321-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-394fce41-c1c1-4fa7-b147-208943110234' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-8iJyAk/resolver-oDVpT4' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-26-0821.19.pdiff [2895 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-26-1413.34.pdiff [16.2 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-26-1413.34.pdiff [16.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-26-0821.19.pdiff [4454 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-26-1413.34.pdiff [7388 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-26-1413.34.pdiff [7388 B] Get:8 http://debian.oregonstate.edu/debian unstable/main armhf Packages [7994 kB] Fetched 8219 kB in 2s (3876 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: sysvinit-utils 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 83.4 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 sysvinit-utils amd64 2.96~beta-2 [83.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.4 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13083 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96~beta-2_amd64.deb ... Unpacking sysvinit-utils (2.96~beta-2) over (2.96~beta-1) ... Setting up sysvinit-utils (2.96~beta-2) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'phyml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/phyml.git Please use: git clone https://salsa.debian.org/med-team/phyml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2243 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main phyml 3:3.3.20190321-2 (dsc) [2094 B] Get:2 http://debian.oregonstate.edu/debian unstable/main phyml 3:3.3.20190321-2 (tar) [2223 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main phyml 3:3.3.20190321-2 (diff) [17.1 kB] Fetched 2243 kB in 0s (42.0 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/phyml-8iJyAk/phyml-3.3.20190321' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-8iJyAk' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), pkg-config, libopenmpi-dev, chrpath, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 12), pkg-config, libopenmpi-dev, chrpath, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [423 B] Get:5 copy:/<>/apt_archive ./ Packages [513 B] Fetched 1893 B in 0s (90.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils chrpath cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base ibverbs-providers:armhf intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libelf1 libevent-2.1-6:armhf libevent-core-2.1-6:armhf libevent-pthreads-2.1-6:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libgfortran5:armhf libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2 libhwloc-dev:armhf libhwloc-plugins:armhf libhwloc5:armhf libibverbs-dev:armhf libibverbs1:armhf libicu63 libicu63:armhf libio-string-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libltdl-dev:armhf libltdl7:armhf liblzma5:armhf libmagic-mgc libmagic1 libncurses6 libnl-3-200:armhf libnl-3-dev:armhf libnl-route-3-200:armhf libnl-route-3-dev:armhf libopenmpi-dev:armhf libopenmpi3:armhf libpciaccess0:armhf libpipeline1 libpmix2:armhf libsigsegv2 libssl1.1 libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:armhf libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db ocl-icd-libopencl1:armhf openmpi-bin:armhf openmpi-common openssh-client pkg-config po-debconf sensible-utils ucf zlib1g:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-armhf-cross libgcc1-dbg-armhf-cross libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross libubsan1-dbg-armhf-cross libquadmath0-dbg-armhf-cross manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf krb5-doc krb5-user libhwloc-contrib-plugins:armhf libtool-doc:armhf openmpi-doc:armhf pciutils:armhf libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser opencl-icd:armhf gfortran:armhf | fortran-compiler:armhf keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils chrpath cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base ibverbs-providers:armhf intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbsd0 libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libelf1 libevent-2.1-6:armhf libevent-core-2.1-6:armhf libevent-pthreads-2.1-6:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc1:armhf libgcc1-armhf-cross libgfortran5:armhf libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2 libhwloc-dev:armhf libhwloc-plugins:armhf libhwloc5:armhf libibverbs-dev:armhf libibverbs1:armhf libicu63 libicu63:armhf libio-string-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblocale-gettext-perl libltdl-dev:armhf libltdl7:armhf liblzma5:armhf libmagic-mgc libmagic1 libncurses6 libnl-3-200:armhf libnl-3-dev:armhf libnl-route-3-200:armhf libnl-route-3-dev:armhf libopenmpi-dev:armhf libopenmpi3:armhf libpciaccess0:armhf libpipeline1 libpmix2:armhf libsigsegv2 libssl1.1 libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:armhf libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db ocl-icd-libopencl1:armhf openmpi-bin:armhf openmpi-common openssh-client pkg-config po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf 0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 79.8 MB of archives. After this operation, 300 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.2.1-8 [193 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20190324-1 [94.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-1 [1533 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 openssh-client amd64 1:8.0p1-6 [809 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.32.51.20190909-1 [2719 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf-base amd64 9.2.1-8cross1 [193 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabihf amd64 9.2.1-8cross1 [6808 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [16.7 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.29-1cross7 [1122 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:9.2.1-8cross1 [37.3 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 9.2.1-8cross1 [73.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 9.2.1-8cross1 [6688 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.2.1-8cross1 [362 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 9.2.1-8cross1 [392 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 9.2.1-8cross1 [112 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armhf-cross all 9.2.1-8cross1 [665 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf amd64 9.2.1-8cross1 [7143 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1476 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.2.9-2cross7 [1312 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.29-1cross7 [2122 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armhf-cross all 9.2.1-8cross1 [1717 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabihf amd64 9.2.1-8cross1 [7385 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1184 B] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.8 [6644 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.66-2 [103 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.6.1 [172 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.6.1 [993 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:9.2.1-8 [37.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.29-2 [2341 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armhf libnl-3-200 armhf 3.4.0-1+b1 [55.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armhf libnl-route-3-200 armhf 3.4.0-1+b1 [136 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libibverbs1 armhf 24.0-2 [44.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf ibverbs-providers armhf 24.0-2 [20.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.2.1-8 [370 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 9.2.1-8 [6868 B] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.2.9-2 [1216 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.29-2 [2141 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [159 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [118 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 9.2.1-8 [75.3 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 9.2.1-8 [431 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 9.2.1-8 [113 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.2.1-8 [665 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armhf libgfortran5 armhf 9.2.1-8 [239 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armhf libltdl7 armhf 2.4.6-11 [387 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armhf libhwloc5 armhf 1.11.13-1 [88.5 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armhf libltdl-dev armhf 2.4.6-11 [160 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libhwloc-dev armhf 1.11.13-1 [154 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-1+b1 [85.1 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armhf libicu63 armhf 63.2-2 [8005 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armhf liblzma5 armhf 5.2.4-1+b1 [145 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armhf ocl-icd-libopencl1 armhf 2.2.12-2 [35.6 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armhf libhwloc-plugins armhf 1.11.13-1 [15.8 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armhf libnl-3-dev armhf 3.4.0-1+b1 [97.1 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armhf libnl-route-3-dev armhf 3.4.0-1+b1 [160 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armhf libibverbs-dev armhf 24.0-2 [157 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armhf libpmix2 armhf 3.1.4-1 [458 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armhf libopenmpi3 armhf 3.1.3-11 [1890 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armhf openmpi-bin armhf 3.1.3-11 [198 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armhf libopenmpi-dev armhf 3.1.3-11 [964 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.2.1-8 [1748 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.8 MB in 1s (67.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 13083 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... 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Setting up libmagic1:amd64 (1:5.37-5) ... Setting up linux-libc-dev:armhf (5.2.9-2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up gcc-9-arm-linux-gnueabihf-base:amd64 (9.2.1-8cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up linux-libc-dev-armhf-cross (5.2.9-2cross7) ... Setting up autopoint (0.19.8.1-9) ... Setting up pkg-config (0.29-6) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up openmpi-common (3.1.3-11) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up binutils-arm-linux-gnueabihf (2.32.51.20190909-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up chrpath (0.16-2+b1) ... Setting up gcc-9-base:armhf (9.2.1-8) ... Setting up libgomp1-armhf-cross (9.2.1-8cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up libtool (2.4.6-11) ... Setting up cpp-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Setting up libedit2:amd64 (3.1-20190324-1) ... Setting up libc6-dev-armhf-cross (2.29-1cross7) ... Setting up m4 (1.4.18-2) ... Setting up libatomic1-armhf-cross (9.2.1-8cross1) ... Setting up libgcc1-armhf-cross (1:9.2.1-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up cpp-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up openssh-client (1:8.0p1-6) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.2.1-8cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++6-armhf-cross (9.2.1-8cross1) ... Setting up libubsan1-armhf-cross (9.2.1-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-armhf-cross (9.2.1-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Setting up libstdc++-9-dev-armhf-cross (9.2.1-8cross1) ... Setting up gcc-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-9-arm-linux-gnueabihf (9.2.1-8cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.8) ... Setting up libc6:armhf (2.29-2) ... Setting up ocl-icd-libopencl1:armhf (2.2.12-2) ... Setting up libnl-3-200:armhf (3.4.0-1+b1) ... Setting up libc6-dev:armhf (2.29-2) ... Setting up liblzma5:armhf (5.2.4-1+b1) ... Setting up libgcc1:armhf (1:9.2.1-8) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:armhf (9.2.1-8) ... Setting up libnl-route-3-200:armhf (3.4.0-1+b1) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armhf (9.2.1-8) ... Setting up libatomic1:armhf (9.2.1-8) ... Setting up libltdl7:armhf (2.4.6-11) ... Setting up libevent-core-2.1-6:armhf (2.1.8-stable-4) ... Setting up libgfortran5:armhf (9.2.1-8) ... Setting up libevent-2.1-6:armhf (2.1.8-stable-4) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up libnl-3-dev:armhf (3.4.0-1+b1) ... Setting up libstdc++6:armhf (9.2.1-8) ... Setting up libevent-pthreads-2.1-6:armhf (2.1.8-stable-4) ... Setting up libpciaccess0:armhf (0.14-1) ... Setting up libibverbs1:armhf (24.0-2) ... Setting up ibverbs-providers:armhf (24.0-2) ... Setting up libhwloc5:armhf (1.11.13-1) ... Setting up debhelper (12.6.1) ... Setting up libicu63:armhf (63.2-2) ... Setting up libnl-route-3-dev:armhf (3.4.0-1+b1) ... Setting up libltdl-dev:armhf (2.4.6-11) ... Setting up libubsan1:armhf (9.2.1-8) ... Setting up libhwloc-dev:armhf (1.11.13-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libibverbs-dev:armhf (24.0-2) ... Setting up libhwloc-plugins:armhf (1.11.13-1) ... Setting up libgcc-9-dev:armhf (9.2.1-8) ... Setting up libstdc++-9-dev:armhf (9.2.1-8) ... Setting up libpmix2:armhf (3.1.4-1) ... Setting up libopenmpi3:armhf (3.1.3-11) ... Setting up openmpi-bin:armhf (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:armhf (3.1.3-11) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.29-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190909-1 dpkg-dev_1.19.7 g++-8_8.3.0-22 g++-9_9.2.1-8 gcc-8_8.3.0-22 gcc-9_9.2.1-8 libc6-dev_2.29-2 libstdc++-8-dev_8.3.0-22 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-armhf-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-armhf-cross_9.2.1-8cross1 linux-libc-dev_5.2.9-2 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1 binutils-arm-linux-gnueabihf_2.32.51.20190909-1 binutils-common_2.32.51.20190909-1 binutils-x86-64-linux-gnu_2.32.51.20190909-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 chrpath_0.16-2+b1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-22 cpp-9_9.2.1-8 cpp-9-arm-linux-gnueabihf_9.2.1-8cross1 cpp-arm-linux-gnueabihf_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-22 g++-9_9.2.1-8 g++-9-arm-linux-gnueabihf_9.2.1-8cross1 g++-arm-linux-gnueabihf_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-22 gcc-8-base_8.3.0-22 gcc-9_9.2.1-8 gcc-9-arm-linux-gnueabihf_9.2.1-8cross1 gcc-9-arm-linux-gnueabihf-base_9.2.1-8cross1 gcc-9-base_9.2.1-8 gcc-9-cross-base_9.2.1-8cross1 gcc-arm-linux-gnueabihf_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 ibverbs-providers_24.0-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.66-2 libasan5_9.2.1-8 libasan5-armhf-cross_9.2.1-8cross1 libatomic1_9.2.1-8 libatomic1-armhf-cross_9.2.1-8cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2 libc-dev-bin_2.29-2 libc6_2.29-2 libc6-armhf-cross_2.29-1cross7 libc6-dev_2.29-2 libc6-dev-armhf-cross_2.29-1cross7 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-8 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libedit2_3.1-20190324-1 libelf1_0.176-1.1 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-22 libgcc-9-dev_9.2.1-8 libgcc-9-dev-armhf-cross_9.2.1-8cross1 libgcc1_1:9.2.1-8 libgcc1-armhf-cross_1:9.2.1-8cross1 libgcrypt20_1.8.5-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-8 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8 libgomp1-armhf-cross_9.2.1-8cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhwloc-dev_1.11.13-1 libhwloc-plugins_1.11.13-1 libhwloc5_1.11.13-1 libibverbs-dev_24.0-2 libibverbs1_24.0-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-8 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.2.1-8 libltdl-dev_2.4.6-11 libltdl7_2.4.6-11 liblz4-1_1.8.3-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-22 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.5.1+really3.4.1-1 libnl-3-200_3.4.0-1+b1 libnl-3-dev_3.4.0-1+b1 libnl-route-3-200_3.4.0-1+b1 libnl-route-3-dev_3.4.0-1+b1 libopenmpi-dev_3.1.3-11 libopenmpi3_3.1.3-11 libp11-kit0_0.23.17-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpmix2_3.1.4-1 libquadmath0_9.2.1-8 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libssl1.1_1.1.1d-1 libstdc++-8-dev_8.3.0-22 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-armhf-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-armhf-cross_9.2.1-8cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-3 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-8 libubsan1_9.2.1-8 libubsan1-armhf-cross_9.2.1-8cross1 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.9-2 linux-libc-dev-armhf-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 ocl-icd-libopencl1_2.2.12-2 openmpi-bin_3.1.3-11 openmpi-common_3.1.3-11 openssh-client_1:8.0p1-6 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-2 tar_1.30+dfsg-6+b1 tzdata_2019c-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: phyml Binary: phyml Architecture: any Version: 3:3.3.20190321-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Kevin Murray Homepage: http://www.atgc-montpellier.fr/phyml Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/phyml Vcs-Git: https://salsa.debian.org/med-team/phyml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), pkg-config, libopenmpi-dev, chrpath Package-List: phyml deb science optional arch=any Checksums-Sha1: d0ec076d0c50d347c3c86776a4f23ac3a272c660 2223457 phyml_3.3.20190321.orig.tar.gz 81893f56f1e57c152f0095be20fb7f2f04f12fb5 17060 phyml_3.3.20190321-2.debian.tar.xz Checksums-Sha256: 5274546cda7445c947fd26838487cd4246e2becf18d333882b7a2a24dff853ee 2223457 phyml_3.3.20190321.orig.tar.gz 4404b2b508943267c82b298b9927cbc31b094448ed8a8096c19ffe114b424b37 17060 phyml_3.3.20190321-2.debian.tar.xz Files: 72d375be9c08ec34bedee126bfb141d9 2223457 phyml_3.3.20190321.orig.tar.gz 4e0075637cd4c3c9592a9ed59ea92416 17060 phyml_3.3.20190321-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl1hRvwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHmkQ//Rydyc0vJzUUjTN2zg8BE+CMZeCCXor3p NvgFaLFqF425MAPYdfIvbn0/9IS+wKLv8i0lE3bX6pLHWQ8DqQhC2jAfwt9YyYMO 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signature on ./phyml_3.3.20190321-2.dsc dpkg-source: info: extracting phyml in /<> dpkg-source: info: unpacking phyml_3.3.20190321.orig.tar.gz dpkg-source: info: unpacking phyml_3.3.20190321-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sse_only_if_supported.patch dpkg-source: info: applying no-stdc++.patch dpkg-source: info: applying no-configure-ac-date.patch dpkg-source: info: applying fix_declaration_of_temp.patch dpkg-source: info: applying fix_wrong_initialisation_of_array.patch dpkg-source: info: applying no-march-native.patch dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-394fce41-c1c1-4fa7-b147-208943110234 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package phyml dpkg-buildpackage: info: source version 3:3.3.20190321-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # save pdf from cleaning mv doc/phyml-manual.pdf . dh_auto_clean mv phyml-manual.pdf doc # remove temporary bin dir for phyml (see above hack) rm -rf debian/bin make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' dh_autoreconf --as-needed configure.ac:16: installing './compile' configure.ac:14: installing './config.guess' configure.ac:14: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # According to README you need different configure options to get different executables # Here we hack in a full build process for phyml executable # The hack includes saving the documentation from beeing cleaned up mv doc/phyml-manual.pdf . dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabihf-gcc... none checking dependency style of arm-linux-gnueabihf-gcc... (cached) none configure: "Do not use MSSE = because not available on arch arm-unknown-linux-gnueabihf" checking for log in -lm... yes checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for arm-linux-gnueabihf-pkg-config... /usr/bin/arm-linux-gnueabihf-pkg-config checking pkg-config is at least version 0.9.0... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml]. Version 3.3.3:3.3.20190321-2 :. arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o main.o main.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o utilities.o utilities.c utilities.c: In function ‘Assign_State_With_Ambiguity’: utilities.c:3033:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 3033 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:3033:26: note: directive argument in the range [0, 2147483647] 3033 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from utilities.h:19, from utilities.c:12: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utilities.c: In function ‘Are_Compatible’: utilities.c:4863:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 4863 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:4863:26: note: directive argument in the range [0, 2147483647] 4863 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from utilities.h:19, from utilities.c:12: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o optimiz.o optimiz.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o lk.o lk.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o bionj.o bionj.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o models.o models.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o free.o free.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o help.o help.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o simu.o simu.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o eigen.o eigen.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o pars.o pars.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o alrt.o alrt.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o interface.o interface.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o cl.o cl.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o spr.o spr.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o draw.o draw.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o stats.o stats.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o rates.o rates.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o mcmc.o mcmc.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o times.o times.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o tiporder.o tiporder.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o m4.o m4.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o io.o io.c io.c: In function ‘Print_Fp_Out’: io.c:2744:47: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 6 [-Wformat-truncation=] 2744 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~ io.c:2744:43: note: directive argument in the range [1, 2147483647] 2744 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from utilities.h:19, from io.h:18, from io.c:13: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 5 and 14 bytes into a destination of size 8 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o make.o make.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o nexus.o nexus.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o init.o init.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o xml.o xml.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o date.o date.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o sse.o sse.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o avx.o avx.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o tbe.o tbe.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o ancestral.o ancestral.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o mixt.o mixt.c arm-linux-gnueabihf-gcc -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -Wl,-z,relro -Wl,-z,now -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o rates.o mcmc.o times.o tiporder.o m4.o io.o make.o nexus.o init.o xml.o date.o sse.o avx.o tbe.o ancestral.o mixt.o -lm -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ mkdir -p /<>/debian/bin mv src/phyml /<>/debian/bin/phyml /usr/bin/make distclean make[2]: Entering directory '/<>' Making distclean in src make[3]: Entering directory '/<>/src' test -z "phyml" || rm -f phyml rm -f *.o rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f ./.deps/alrt.Po rm -f ./.deps/ancestral.Po rm -f ./.deps/avx.Po rm -f ./.deps/beagle_utils.Po rm -f ./.deps/bionj.Po rm -f ./.deps/checkpoint.Po rm -f ./.deps/cl.Po rm -f ./.deps/date.Po rm -f ./.deps/draw.Po rm -f ./.deps/eigen.Po rm -f ./.deps/free.Po rm -f ./.deps/geo.Po rm -f ./.deps/help.Po rm -f ./.deps/init.Po rm -f ./.deps/interface.Po rm -f ./.deps/invitee.Po rm -f ./.deps/io.Po rm -f ./.deps/lk.Po rm -f ./.deps/m4.Po rm -f ./.deps/main.Po rm -f ./.deps/make.Po rm -f ./.deps/mcmc.Po rm -f ./.deps/mg.Po rm -f ./.deps/mixt.Po rm -f ./.deps/models.Po rm -f ./.deps/nexus.Po rm -f ./.deps/optimiz.Po rm -f ./.deps/pars.Po rm -f ./.deps/phyml_mpi-alrt.Po rm -f ./.deps/phyml_mpi-ancestral.Po rm -f ./.deps/phyml_mpi-avx.Po rm -f ./.deps/phyml_mpi-bionj.Po rm -f ./.deps/phyml_mpi-cl.Po rm -f ./.deps/phyml_mpi-date.Po rm -f ./.deps/phyml_mpi-draw.Po rm -f ./.deps/phyml_mpi-eigen.Po rm -f ./.deps/phyml_mpi-free.Po rm -f ./.deps/phyml_mpi-help.Po rm -f ./.deps/phyml_mpi-init.Po rm -f ./.deps/phyml_mpi-interface.Po rm -f ./.deps/phyml_mpi-io.Po rm -f ./.deps/phyml_mpi-lk.Po rm -f ./.deps/phyml_mpi-m4.Po rm -f ./.deps/phyml_mpi-main.Po rm -f ./.deps/phyml_mpi-make.Po rm -f ./.deps/phyml_mpi-mcmc.Po rm -f ./.deps/phyml_mpi-mg.Po rm -f ./.deps/phyml_mpi-mixt.Po rm -f ./.deps/phyml_mpi-models.Po rm -f ./.deps/phyml_mpi-mpi_boot.Po rm -f ./.deps/phyml_mpi-nexus.Po rm -f ./.deps/phyml_mpi-optimiz.Po rm -f ./.deps/phyml_mpi-pars.Po rm -f ./.deps/phyml_mpi-rates.Po rm -f ./.deps/phyml_mpi-simu.Po rm -f ./.deps/phyml_mpi-spr.Po rm -f ./.deps/phyml_mpi-sse.Po rm -f ./.deps/phyml_mpi-stats.Po rm -f ./.deps/phyml_mpi-tbe.Po rm -f ./.deps/phyml_mpi-times.Po rm -f ./.deps/phyml_mpi-tiporder.Po rm -f ./.deps/phyml_mpi-utilities.Po rm -f ./.deps/phyml_mpi-xml.Po rm -f ./.deps/phyrex.Po rm -f ./.deps/rates.Po rm -f ./.deps/simu.Po rm -f ./.deps/spr.Po rm -f ./.deps/sse.Po rm -f ./.deps/stats.Po rm -f ./.deps/tbe.Po rm -f ./.deps/times.Po rm -f ./.deps/tiporder.Po rm -f ./.deps/utilities.Po rm -f ./.deps/xml.Po rm -f Makefile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f cscope.out cscope.in.out cscope.po.out cscope.files make[3]: Leaving directory '/<>' rm -f config.status config.cache config.log configure.lineno config.status.lineno rm -f Makefile make[2]: Leaving directory '/<>' dh_auto_configure -- --enable-mpi ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf --enable-mpi configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabihf-gcc... none checking dependency style of arm-linux-gnueabihf-gcc... (cached) none configure: "Do not use MSSE = because not available on arch arm-unknown-linux-gnueabihf" checking for log in -lm... yes checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for arm-linux-gnueabihf-pkg-config... /usr/bin/arm-linux-gnueabihf-pkg-config checking pkg-config is at least version 0.9.0... yes checking for MPI_C... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20190321-2 :. arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-main.o `test -f 'main.c' || echo './'`main.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-utilities.o `test -f 'utilities.c' || echo './'`utilities.c utilities.c: In function ‘Assign_State_With_Ambiguity’: utilities.c:3033:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 3033 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:3033:26: note: directive argument in the range [0, 2147483647] 3033 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from utilities.h:19, from utilities.c:12: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utilities.c: In function ‘Are_Compatible’: utilities.c:4863:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 4863 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:4863:26: note: directive argument in the range [0, 2147483647] 4863 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from utilities.h:19, from utilities.c:12: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-optimiz.o `test -f 'optimiz.c' || echo './'`optimiz.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-lk.o `test -f 'lk.c' || echo './'`lk.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-bionj.o `test -f 'bionj.c' || echo './'`bionj.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-models.o `test -f 'models.c' || echo './'`models.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-free.o `test -f 'free.c' || echo './'`free.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-help.o `test -f 'help.c' || echo './'`help.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-simu.o `test -f 'simu.c' || echo './'`simu.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-eigen.o `test -f 'eigen.c' || echo './'`eigen.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-pars.o `test -f 'pars.c' || echo './'`pars.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-alrt.o `test -f 'alrt.c' || echo './'`alrt.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-interface.o `test -f 'interface.c' || echo './'`interface.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-cl.o `test -f 'cl.c' || echo './'`cl.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-spr.o `test -f 'spr.c' || echo './'`spr.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-draw.o `test -f 'draw.c' || echo './'`draw.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-stats.o `test -f 'stats.c' || echo './'`stats.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-rates.o `test -f 'rates.c' || echo './'`rates.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-mcmc.o `test -f 'mcmc.c' || echo './'`mcmc.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-times.o `test -f 'times.c' || echo './'`times.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-tiporder.o `test -f 'tiporder.c' || echo './'`tiporder.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-mg.o `test -f 'mg.c' || echo './'`mg.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-m4.o `test -f 'm4.c' || echo './'`m4.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-io.o `test -f 'io.c' || echo './'`io.c io.c: In function ‘Print_Fp_Out’: io.c:2744:47: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 6 [-Wformat-truncation=] 2744 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~ io.c:2744:43: note: directive argument in the range [1, 2147483647] 2744 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from utilities.h:19, from io.h:18, from io.c:13: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 5 and 14 bytes into a destination of size 8 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-make.o `test -f 'make.c' || echo './'`make.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-nexus.o `test -f 'nexus.c' || echo './'`nexus.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-init.o `test -f 'init.c' || echo './'`init.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-xml.o `test -f 'xml.c' || echo './'`xml.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-mixt.o `test -f 'mixt.c' || echo './'`mixt.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-tbe.o `test -f 'tbe.c' || echo './'`tbe.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-date.o `test -f 'date.c' || echo './'`date.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-sse.o `test -f 'sse.c' || echo './'`sse.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-avx.o `test -f 'avx.c' || echo './'`avx.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-ancestral.o `test -f 'ancestral.c' || echo './'`ancestral.c arm-linux-gnueabihf-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -c -o phyml_mpi-mpi_boot.o `test -f 'mpi_boot.c' || echo './'`mpi_boot.c arm-linux-gnueabihf-gcc -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -Wl,-z,relro -Wl,-z,now -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-m4.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-ancestral.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ # mkdir -p /<>/debian/bin mv src/phyml-mpi /<>/debian/bin/phyml-mpi mv phyml-manual.pdf doc make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j1 install DESTDIR=/<>/debian/phyml AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20190321-2 :. arm-linux-gnueabihf-gcc -pthread -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-m4.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-ancestral.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi -lm Done. make[4]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/phyml/usr/bin' /usr/bin/install -c phyml-mpi '/<>/debian/phyml/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # install phyml binary we have kept safe above mkdir -p /<>/debian/phyml/usr/lib/phyml/bin mv /<>/debian/bin/* /<>/debian/phyml/usr/lib/phyml/bin chrpath --delete debian/phyml/usr/lib/phyml/bin/phyml* make[1]: Leaving directory '/<>' dh_install -a debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs mv /<>/debian/phyml/usr/share/doc/phyml/phyml-manual.pdf /<>/debian/phyml/usr/share/doc/phyml/phyml_manual.pdf make[1]: Leaving directory '/<>' dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/*/usr/share/doc -name "*.nxs" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.xml" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.mat" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.txt" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a debian/rules override_dh_dwz make[1]: Entering directory '/<>' echo "Do not run dh_dwz" Do not run dh_dwz make[1]: Leaving directory '/<>' dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'phyml' in '../phyml_3.3.20190321-2_armhf.deb'. dpkg-deb: building package 'phyml-dbgsym' in '../phyml-dbgsym_3.3.20190321-2_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../phyml_3.3.20190321-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-09-26T16:45:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ phyml_3.3.20190321-2_armhf.changes: ----------------------------------- Format: 1.8 Date: Sat, 24 Aug 2019 16:08:44 +0200 Source: phyml Binary: phyml phyml-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 3:3.3.20190321-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: phyml - Phylogenetic estimation using Maximum Likelihood Closes: 935598 Changes: phyml (3:3.3.20190321-2) unstable; urgency=medium . * Fix autopkgtest Closes: #935598 * Secure URI in copyright format * Remove trailing whitespace in debian/changelog * Remove obsolete fields Name, Contact from debian/upstream/metadata. 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+------------------------------------------------------------------------------+ Format: 1.0 Source: phyml Binary: phyml Architecture: armhf Version: 3:3.3.20190321-2 Checksums-Md5: f357eb7abd730e75a950bd5265ff5608 44336 phyml-dbgsym_3.3.20190321-2_armhf.deb 1222298e14f15d1a7032d4c7ad12431f 1559044 phyml_3.3.20190321-2_armhf.deb Checksums-Sha1: 2fce884625caebaa2f5b29898b8e73f2740e8b41 44336 phyml-dbgsym_3.3.20190321-2_armhf.deb bfe8e828ba458839eeae5bd40af651a7c07277f4 1559044 phyml_3.3.20190321-2_armhf.deb Checksums-Sha256: 471477b2da3eef04967479ee211be5f3a2443c12cfa332658ab9c6641bfa5319 44336 phyml-dbgsym_3.3.20190321-2_armhf.deb bd544c12d2078c18f36985088d052897d727fd95156e3af253eaa1064f61de78 1559044 phyml_3.3.20190321-2_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 26 Sep 2019 16:45:47 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190909-1), binutils-common (= 2.32.51.20190909-1), binutils-x86-64-linux-gnu (= 2.32.51.20190909-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), chrpath (= 0.16-2+b1), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-22), cpp-9 (= 9.2.1-8), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.6.1), debianutils (= 4.9), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-8), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-22), gcc-8-base (= 8.3.0-22), gcc-9 (= 9.2.1-8), gcc-9-base (= 9.2.1-8), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.22+b1), ibverbs-providers (= 24.0-2), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.66-2), libasan5 (= 9.2.1-8), libatomic1 (= 9.2.1-8), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190909-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-2), libc-dev-bin (= 2.29-2), libc6 (= 2.29-2), libc6-dev (= 2.29-2), libcap-ng0 (= 0.7.9-2+b1), libcc1-0 (= 9.2.1-8), libcom-err2 (= 1.45.4-1), libcroco3 (= 0.6.13-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdebhelper-perl (= 12.6.1), libdpkg-perl (= 1.19.7), libedit2 (= 3.1-20190324-1), libelf1 (= 0.176-1.1), libevent-2.1-6 (= 2.1.8-stable-4), libevent-core-2.1-6 (= 2.1.8-stable-4), libevent-pthreads-2.1-6 (= 2.1.8-stable-4), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.0-1), libgcc-8-dev (= 8.3.0-22), libgcc-9-dev (= 9.2.1-8), libgcc1 (= 1:9.2.1-8), libgcrypt20 (= 1.8.5-2), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libgfortran5 (= 9.2.1-8), libglib2.0-0 (= 2.60.6-2), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.2.1-8), libgpg-error0 (= 1.36-7), libgssapi-krb5-2 (= 1.17-6), libhwloc-dev (= 1.11.13-1), libhwloc-plugins (= 1.11.13-1), libhwloc5 (= 1.11.13-1), libibverbs-dev (= 24.0-2), libibverbs1 (= 24.0-2), libicu63 (= 63.2-2), libisl21 (= 0.21-2), libitm1 (= 9.2.1-8), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), liblsan0 (= 9.2.1-8), libltdl-dev (= 2.4.6-11), libltdl7 (= 2.4.6-11), liblz4-1 (= 1.8.3-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-22), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libnl-3-200 (= 3.4.0-1+b1), libnl-3-dev (= 3.4.0-1+b1), libnl-route-3-200 (= 3.4.0-1+b1), libnl-route-3-dev (= 3.4.0-1+b1), libopenmpi-dev (= 3.1.3-11), libopenmpi3 (= 3.1.3-11), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpciaccess0 (= 0.14-1), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libpmix2 (= 3.1.4-1), libquadmath0 (= 9.2.1-8), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsemanage-common (= 2.9-3), libsemanage1 (= 2.9-3), libsepol1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssl1.1 (= 1.1.1d-1), libstdc++-9-dev (= 9.2.1-8), libstdc++6 (= 9.2.1-8), libsub-override-perl (= 0.09-2), libsystemd0 (= 242-7), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-8), libubsan1 (= 9.2.1-8), libuchardet0 (= 0.0.6-3), libudev1 (= 242-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.2.9-2), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.7-3), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), ncurses-bin (= 6.1+20190803-1), ocl-icd-libopencl1 (= 2.2.12-2), openmpi-bin (= 3.1.3-11), openmpi-common (= 3.1.3-11), openssh-client (= 1:8.0p1-6), passwd (= 1:4.7-2), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), pkg-config (= 0.29-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.96~beta-2), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1566655724" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ phyml-dbgsym_3.3.20190321-2_armhf.deb ------------------------------------- new Debian package, version 2.0. size 44336 bytes: control archive=656 bytes. 462 bytes, 12 lines control 318 bytes, 3 lines md5sums Package: phyml-dbgsym Source: phyml Version: 3:3.3.20190321-2 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 302 Depends: phyml (= 3:3.3.20190321-2) Section: debug Priority: optional Description: debug symbols for phyml Build-Ids: 3c820da30f4d3f944dc1b66e924e98815c5bd07f 7853064580544868902e1a2d06f3aa04867024b3 aaa50de6929acb96112f7ec7c72a84d0494131cf drwxr-xr-x root/root 0 2019-08-24 14:08 ./ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/lib/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/lib/debug/.build-id/3c/ -rw-r--r-- root/root 98076 2019-08-24 14:08 ./usr/lib/debug/.build-id/3c/820da30f4d3f944dc1b66e924e98815c5bd07f.debug drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/lib/debug/.build-id/78/ -rw-r--r-- root/root 98868 2019-08-24 14:08 ./usr/lib/debug/.build-id/78/53064580544868902e1a2d06f3aa04867024b3.debug drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/lib/debug/.build-id/aa/ -rw-r--r-- root/root 98868 2019-08-24 14:08 ./usr/lib/debug/.build-id/aa/a50de6929acb96112f7ec7c72a84d0494131cf.debug drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/share/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-08-24 14:08 ./usr/share/doc/phyml-dbgsym -> phyml phyml_3.3.20190321-2_armhf.deb ------------------------------ new Debian package, version 2.0. size 1559044 bytes: control archive=1884 bytes. 1667 bytes, 31 lines control 1695 bytes, 24 lines md5sums Package: phyml Version: 3:3.3.20190321-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 4306 Depends: libc6 (>= 2.29), libopenmpi3, openmpi-bin Section: science Priority: optional Homepage: http://www.atgc-montpellier.fr/phyml Description: Phylogenetic estimation using Maximum Likelihood PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). . PhyML was designed to process moderate to large data sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long can be analyzed. In practice however, the amount of memory required to process a data set is proportional of the product of the number of sequences by their length. Hence, a large number of sequences can only be processed provided that they are short. Also, PhyML can handle long sequences provided that they are not numerous. With most standard personal computers, the “comfort zone” for PhyML generally lies around 3 to 500 sequences less than 2,000 character long. . This package also includes PhyTime. drwxr-xr-x root/root 0 2019-08-24 14:08 ./ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/bin/ -rwxr-xr-x root/root 579 2019-08-24 14:08 ./usr/bin/phyml -rwxr-xr-x root/root 1039776 2019-08-24 14:08 ./usr/bin/phyml-mpi drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/lib/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/lib/phyml/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/lib/phyml/bin/ -rwxr-xr-x root/root 1031128 2019-08-24 14:08 ./usr/lib/phyml/bin/phyml -rwxr-xr-x root/root 1039320 2019-08-24 14:08 ./usr/lib/phyml/bin/phyml-mpi drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/share/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/share/doc-base/ -rw-r--r-- root/root 202 2019-08-24 14:08 ./usr/share/doc-base/phyml drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/share/doc/phyml/ -rw-r--r-- root/root 2446 2019-08-24 14:08 ./usr/share/doc/phyml/README.Debian -rw-r--r-- root/root 3072 2019-08-24 14:08 ./usr/share/doc/phyml/changelog.Debian.gz -rw-r--r-- root/root 1490 2019-08-24 14:08 ./usr/share/doc/phyml/copyright drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/share/doc/phyml/examples/ -rw-r--r-- root/root 20905 2019-08-24 14:08 ./usr/share/doc/phyml/examples/example.nex drwxr-xr-x root/root 0 2019-04-04 07:13 ./usr/share/doc/phyml/examples/lg4x/ -rw-r--r-- root/root 1900 2019-04-04 07:13 ./usr/share/doc/phyml/examples/lg4x/X1.mat -rw-r--r-- root/root 1899 2019-04-04 07:13 ./usr/share/doc/phyml/examples/lg4x/X2.mat -rw-r--r-- root/root 1893 2019-04-04 07:13 ./usr/share/doc/phyml/examples/lg4x/X3.mat -rw-r--r-- root/root 1895 2019-04-04 07:13 ./usr/share/doc/phyml/examples/lg4x/X4.mat -rw-r--r-- root/root 1994 2019-04-04 07:13 ./usr/share/doc/phyml/examples/lg4x/lg4x.xml -rw-r--r-- root/root 2175 2019-04-04 07:13 ./usr/share/doc/phyml/examples/nexus_example.nxs -rwxr-xr-x root/root 60771 2019-04-04 07:13 ./usr/share/doc/phyml/examples/nucleic drwxr-xr-x root/root 0 2019-04-04 07:13 ./usr/share/doc/phyml/examples/phyrex/ -rw-r--r-- root/root 70310 2019-04-04 07:13 ./usr/share/doc/phyml/examples/phyrex/h1n1.nxs -rw-r--r-- root/root 1784 2019-04-04 07:13 ./usr/share/doc/phyml/examples/phyrex/usa_coord.txt drwxr-xr-x root/root 0 2019-04-04 07:13 ./usr/share/doc/phyml/examples/phytime/ -rw-r--r-- root/root 2189 2019-04-04 07:13 ./usr/share/doc/phyml/examples/phytime/dating_example.xml -rw-r--r-- root/root 100171 2019-04-04 07:13 ./usr/share/doc/phyml/examples/phytime/seq.txt -rwxr-xr-x root/root 25990 2019-04-04 07:13 ./usr/share/doc/phyml/examples/proteic -rw-r--r-- root/root 965863 2019-04-04 07:13 ./usr/share/doc/phyml/phyml_manual.pdf -rw-r--r-- root/root 1257 2019-08-24 14:08 ./usr/share/doc/phyml/run-unit-test drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/share/man/ drwxr-xr-x root/root 0 2019-08-24 14:08 ./usr/share/man/man1/ -rw-r--r-- root/root 2899 2019-08-24 14:08 ./usr/share/man/man1/phyml.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [553 B] Get:5 copy:/<>/apt_archive ./ Packages [643 B] Fetched 2159 B in 0s (169 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 6992 kB of archives. After this operation, 19.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-2 [646 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 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[17.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:48 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all 2.23.0 [1261 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6992 kB in 0s (27.2 MB/s) Selecting previously unselected package readline-common. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 16520 Build-Time: 136 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 20 Job: phyml_3:3.3.20190321-2 Lintian: pass Machine Architecture: amd64 Package: phyml Package-Time: 169 Source-Version: 3:3.3.20190321-2 Space: 16520 Status: successful Version: 3:3.3.20190321-2 -------------------------------------------------------------------------------- Finished at 2019-09-26T16:45:48Z Build needed 00:02:49, 16520k disk space