sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | phyml 3:3.3.20220408-3 (amd64) Sun, 29 Oct 2023 21:41:46 +0000 | +==============================================================================+ Package: phyml Version: 3:3.3.20220408-3 Source Version: 3:3.3.20220408-3 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.TGjkU9ex3P... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-6c1SoS/resolver-IWxjRi' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.3 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9438 kB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [9562 kB] Fetched 29.5 MB in 8s (3922 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libseccomp2 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 46.0 kB of archives. After this operation, 1024 B disk space will be freed. Get:1 http://mirror.einval.org/debian unstable/main arm64 libseccomp2 arm64 2.5.4-2 [46.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.0 kB in 0s (1815 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10420 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-2_arm64.deb ... Unpacking libseccomp2:arm64 (2.5.4-2) over (2.5.4-1+b3) ... Setting up libseccomp2:arm64 (2.5.4-2) ... Processing triggers for libc-bin (2.37-12) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'phyml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/phyml.git Please use: git clone https://salsa.debian.org/med-team/phyml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1833 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main phyml 3:3.3.20220408-3 (dsc) [2258 B] Get:2 http://mirror.einval.org/debian unstable/main phyml 3:3.3.20220408-3 (tar) [1804 kB] Get:3 http://mirror.einval.org/debian unstable/main phyml 3:3.3.20220408-3 (diff) [26.9 kB] Fetched 1833 kB in 0s (6564 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/phyml-6c1SoS/phyml-3.3.20220408' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-6c1SoS' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkg-config, libopenmpi-dev, chrpath, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), pkg-config, libopenmpi-dev, chrpath, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [751 B] Get:5 copy:/<>/apt_archive ./ Packages [794 B] Fetched 2154 B in 0s (125 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: adduser autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils chrpath cpp-13-x86-64-linux-gnu cpp-9:amd64 cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file flang-16:amd64 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-9-base:amd64 gcc-x86-64-linux-gnu gettext gettext-base groff-base ibverbs-providers ibverbs-providers:amd64 intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbsd0 libbsd0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcap2:amd64 libcbor0.10 libcc1-0:amd64 libclang-cpp16:amd64 libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libedit2:amd64 libelf1 libevent-2.1-7:amd64 libevent-core-2.1-7 libevent-core-2.1-7:amd64 libevent-dev:amd64 libevent-extra-2.1-7:amd64 libevent-openssl-2.1-7:amd64 libevent-pthreads-2.1-7 libevent-pthreads-2.1-7:amd64 libfabric1 libfabric1:amd64 libfakeroot libffi8:amd64 libfido2-1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libflang-16-dev:amd64 libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgmp10:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libhwasan0:amd64 libhwasan0-amd64-cross libhwloc-dev:amd64 libhwloc-plugins libhwloc-plugins:amd64 libhwloc15 libhwloc15:amd64 libibverbs-dev:amd64 libibverbs1 libibverbs1:amd64 libicu72 libicu72:amd64 libio-string-perl libisl23:amd64 libitm1:amd64 libitm1-amd64-cross libjs-jquery libjs-jquery-ui libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 libllvm16:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libltdl-dev:amd64 libltdl7:amd64 liblzma5:amd64 libmagic-mgc libmagic1 libmd0:amd64 libmpc3:amd64 libmpfr6:amd64 libmunge2 libmunge2:amd64 libnl-3-200 libnl-3-200:amd64 libnl-3-dev:amd64 libnl-route-3-200 libnl-route-3-200:amd64 libnl-route-3-dev:amd64 libnsl-dev:amd64 libnsl2:amd64 libnuma-dev:amd64 libnuma1:amd64 libopenmpi-dev:amd64 libopenmpi3 libopenmpi3:amd64 libpciaccess0 libpciaccess0:amd64 libpipeline1 libpkgconf3 libpmix-dev:amd64 libpmix2 libpmix2:amd64 libpsm-infinipath1:amd64 libpsm2-2:amd64 libquadmath0:amd64 libquadmath0-amd64-cross librdmacm1 librdmacm1:amd64 libsemanage-common libsemanage2 libsepol2 libssl3:amd64 libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtinfo6:amd64 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libucx0 libucx0:amd64 libudev1:amd64 libuuid1:amd64 libx11-6 libx11-6:amd64 libx11-data libxau6 libxau6:amd64 libxcb1 libxcb1:amd64 libxdmcp6 libxdmcp6:amd64 libxext6 libxext6:amd64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:amd64 libxnvctrl0 libxnvctrl0:amd64 libyaml-perl libz3-4:amd64 libzstd1:amd64 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db ocl-icd-libopencl1 ocl-icd-libopencl1:amd64 openmpi-bin openmpi-common openssh-client passwd pkg-config:amd64 pkgconf:amd64 pkgconf-bin po-debconf sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: cron quota autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc gcc-9-locales:amd64 cpp-doc dh-make binutils-multiarch g++-13-multilib-x86-64-linux-gnu gcc-13-doc gcc-13-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 libhwloc-contrib-plugins:amd64 libjs-jquery-ui-docs libtool-doc:amd64 openmpi-doc:amd64 pciutils pciutils:amd64 libstdc++-13-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser opencl-icd opencl-icd:amd64 gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl javascript-common krb5-locales:amd64 libcoarrays-openmpi-dev:amd64 libltdl-dev uuid-runtime:amd64 libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl xauth libmail-sendmail-perl The following NEW packages will be installed: adduser autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils chrpath cpp-13-x86-64-linux-gnu cpp-9:amd64 cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file flang-16:amd64 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-9-base:amd64 gcc-x86-64-linux-gnu gettext gettext-base groff-base ibverbs-providers ibverbs-providers:amd64 intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbsd0 libbsd0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcap2:amd64 libcbor0.10 libcc1-0:amd64 libclang-cpp16:amd64 libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libedit2 libedit2:amd64 libelf1 libevent-2.1-7:amd64 libevent-core-2.1-7 libevent-core-2.1-7:amd64 libevent-dev:amd64 libevent-extra-2.1-7:amd64 libevent-openssl-2.1-7:amd64 libevent-pthreads-2.1-7 libevent-pthreads-2.1-7:amd64 libfabric1 libfabric1:amd64 libfakeroot libffi8:amd64 libfido2-1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libflang-16-dev:amd64 libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgmp10:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libhwasan0:amd64 libhwasan0-amd64-cross libhwloc-dev:amd64 libhwloc-plugins libhwloc-plugins:amd64 libhwloc15 libhwloc15:amd64 libibverbs-dev:amd64 libibverbs1 libibverbs1:amd64 libicu72 libicu72:amd64 libio-string-perl libisl23:amd64 libitm1:amd64 libitm1-amd64-cross libjs-jquery libjs-jquery-ui libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 libllvm16:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libltdl-dev:amd64 libltdl7:amd64 liblzma5:amd64 libmagic-mgc libmagic1 libmd0:amd64 libmpc3:amd64 libmpfr6:amd64 libmunge2 libmunge2:amd64 libnl-3-200 libnl-3-200:amd64 libnl-3-dev:amd64 libnl-route-3-200 libnl-route-3-200:amd64 libnl-route-3-dev:amd64 libnsl-dev:amd64 libnsl2:amd64 libnuma-dev:amd64 libnuma1:amd64 libopenmpi-dev:amd64 libopenmpi3 libopenmpi3:amd64 libpciaccess0 libpciaccess0:amd64 libpipeline1 libpkgconf3 libpmix-dev:amd64 libpmix2 libpmix2:amd64 libpsm-infinipath1:amd64 libpsm2-2:amd64 libquadmath0:amd64 libquadmath0-amd64-cross librdmacm1 librdmacm1:amd64 libsemanage-common libsemanage2 libsepol2 libssl3:amd64 libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtinfo6:amd64 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libucx0 libucx0:amd64 libudev1:amd64 libuuid1:amd64 libx11-6 libx11-6:amd64 libx11-data libxau6 libxau6:amd64 libxcb1 libxcb1:amd64 libxdmcp6 libxdmcp6:amd64 libxext6 libxext6:amd64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:amd64 libxnvctrl0 libxnvctrl0:amd64 libyaml-perl libz3-4:amd64 libzstd1:amd64 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db ocl-icd-libopencl1 ocl-icd-libopencl1:amd64 openmpi-bin openmpi-common openssh-client passwd pkg-config:amd64 pkgconf:amd64 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 211 newly installed, 0 to remove and 0 not upgraded. Need to get 226 MB of archives. After this operation, 1409 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-6 [15.0 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libsemanage-common all 3.5-1 [9908 B] Get:4 http://mirror.einval.org/debian unstable/main arm64 libsepol2 arm64 3.5-1 [248 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libsemanage2 arm64 3.5-1 [82.3 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 passwd arm64 1:4.13+dfsg1-3 [946 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 adduser all 3.137 [140 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.20 [19.3 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-2 [314 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.45-2 [99.9 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-2 [42.8 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-13+b1 [159 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-3 [1127 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.39.2-4 [89.7 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.0-1 [1385 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libbsd0 arm64 0.11.7-4 [113 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libedit2 arm64 3.1-20230828-1 [88.9 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libcbor0.10 arm64 0.10.2-1.1 [27.0 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libfido2-1 arm64 1.13.0-1+b1 [73.4 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 openssh-client arm64 1:9.4p1-1 [930 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-13 [496 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 chrpath arm64 0.16-2+b1 [16.0 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu-base arm64 13.2.0-2cross1 [39.6 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 cpp-13-x86-64-linux-gnu arm64 13.2.0-2cross1 [9274 kB] Get:32 http://mirror.einval.org/debian unstable/main amd64 gcc-9-base amd64 9.5.0-4 [28.7 kB] Get:33 http://mirror.einval.org/debian unstable/main amd64 gcc-13-base amd64 13.2.0-6 [40.5 kB] Get:34 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 13.2.0-6 [57.8 kB] Get:35 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.37-12 [2753 kB] Get:36 http://mirror.einval.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2 [557 kB] Get:37 http://mirror.einval.org/debian unstable/main amd64 libisl23 amd64 0.26-3 [700 kB] Get:38 http://mirror.einval.org/debian unstable/main amd64 libmpfr6 amd64 4.2.1-1 [713 kB] Get:39 http://mirror.einval.org/debian unstable/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:40 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.2.13.dfsg-3 [87.0 kB] Get:41 http://mirror.einval.org/debian unstable/main amd64 cpp-9 amd64 9.5.0-4 [9712 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:13.2.0-1 [4116 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.41-6 [2382 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-2cross1 [35.2 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 13.2.0-2cross1 [57.7 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 13.2.0-2cross1 [128 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 13.2.0-2cross1 [25.5 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 13.2.0-2cross1 [8988 B] Get:50 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 13.2.0-2cross1 [2552 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 13.2.0-2cross1 [1101 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 13.2.0-2cross1 [2326 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.37-3cross1 [1477 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 13.2.0-2cross1 [648 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 13.2.0-2cross1 [1009 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 13.2.0-2cross1 [1153 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 13.2.0-2cross1 [145 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-amd64-cross all 13.2.0-2cross1 [2542 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu arm64 13.2.0-2cross1 [18.3 MB] Get:60 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:13.2.0-1 [1472 B] Get:61 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.3.7-1cross1 [1917 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.37-3cross1 [1897 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-amd64-cross all 13.2.0-2cross1 [2201 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 g++-13-x86-64-linux-gnu arm64 13.2.0-2cross1 [10.1 MB] Get:65 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:13.2.0-1 [1176 B] Get:66 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-4 [9223 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3 [618 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.30-2 [63.4 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.10 [3488 B] Get:82 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.7 [82.1 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get:87 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:89 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.189-4 [173 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-13+b1 [1249 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.7 [956 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.32.1-1 [27.9 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.32.1-1 [66.3 kB] Get:97 http://mirror.einval.org/debian unstable/main amd64 libmd0 amd64 1.1.0-1 [35.5 kB] Get:98 http://mirror.einval.org/debian unstable/main amd64 libbsd0 amd64 0.11.7-4 [115 kB] Get:99 http://mirror.einval.org/debian unstable/main amd64 libtinfo6 amd64 6.4+20231016-1 [340 kB] Get:100 http://mirror.einval.org/debian unstable/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:101 http://mirror.einval.org/debian unstable/main amd64 libffi8 amd64 3.4.4-1 [22.9 kB] Get:102 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 13.2.0-6 [694 kB] Get:103 http://mirror.einval.org/debian unstable/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:104 http://mirror.einval.org/debian unstable/main amd64 liblzma5 amd64 5.4.4-0.1 [229 kB] Get:105 http://mirror.einval.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Get:106 http://mirror.einval.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get:107 http://mirror.einval.org/debian unstable/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:108 http://mirror.einval.org/debian unstable/main amd64 libllvm16 amd64 1:16.0.6-17 [23.1 MB] Get:109 http://mirror.einval.org/debian unstable/main amd64 libclang-cpp16 amd64 1:16.0.6-17 [11.5 MB] Get:110 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 13.2.0-6 [131 kB] Get:111 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 13.2.0-6 [26.1 kB] Get:112 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 13.2.0-6 [9288 B] Get:113 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 13.2.0-6 [2559 kB] Get:114 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 13.2.0-6 [1102 kB] Get:115 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 13.2.0-6 [2334 kB] Get:116 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 13.2.0-6 [1010 kB] Get:117 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 13.2.0-6 [1154 kB] Get:118 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 13.2.0-6 [145 kB] Get:119 http://mirror.einval.org/debian unstable/main amd64 libgcc-13-dev amd64 13.2.0-6 [2538 kB] Get:120 http://mirror.einval.org/debian unstable/main amd64 linux-libc-dev amd64 6.5.8-1 [2008 kB] Get:121 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-2 [89.7 kB] Get:122 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-2 [118 kB] Get:123 http://mirror.einval.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-5 [32.9 kB] Get:124 http://mirror.einval.org/debian unstable/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] Get:125 http://mirror.einval.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-5 [79.6 kB] Get:126 http://mirror.einval.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:127 http://mirror.einval.org/debian unstable/main amd64 libssl3 amd64 3.0.12-1 [2018 kB] Get:128 http://mirror.einval.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-5 [332 kB] Get:129 http://mirror.einval.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-5 [135 kB] Get:130 http://mirror.einval.org/debian unstable/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:131 http://mirror.einval.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:132 http://mirror.einval.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:133 http://mirror.einval.org/debian unstable/main amd64 libnsl-dev amd64 1.3.0-3 [66.9 kB] Get:134 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.37-12 [1905 kB] Get:135 http://mirror.einval.org/debian unstable/main amd64 libstdc++-13-dev amd64 13.2.0-6 [2224 kB] Get:136 http://mirror.einval.org/debian unstable/main amd64 libflang-16-dev amd64 1:16.0.6-17 [14.0 MB] Get:137 http://mirror.einval.org/debian unstable/main amd64 flang-16 amd64 1:16.0.6-17 [17.9 MB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libnl-3-200 arm64 3.7.0-0.2+b1 [60.2 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libnl-route-3-200 arm64 3.7.0-0.2+b1 [168 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 libibverbs1 arm64 48.0-1 [57.6 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 ibverbs-providers arm64 48.0-1 [313 kB] Get:142 http://mirror.einval.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get:143 http://mirror.einval.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get:144 http://mirror.einval.org/debian unstable/main amd64 libibverbs1 amd64 48.0-1 [61.2 kB] Get:145 http://mirror.einval.org/debian unstable/main amd64 ibverbs-providers amd64 48.0-1 [340 kB] Get:146 http://mirror.einval.org/debian unstable/main amd64 libcap2 amd64 1:2.66-4 [27.0 kB] Get:147 http://mirror.einval.org/debian unstable/main amd64 libcc1-0 amd64 13.2.0-6 [43.0 kB] Get:148 http://mirror.einval.org/debian unstable/main amd64 libevent-2.1-7 amd64 2.1.12-stable-8 [180 kB] Get:149 http://mirror.einval.org/debian unstable/main arm64 libevent-core-2.1-7 arm64 2.1.12-stable-8 [124 kB] Get:150 http://mirror.einval.org/debian unstable/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get:151 http://mirror.einval.org/debian unstable/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-8 [107 kB] Get:152 http://mirror.einval.org/debian unstable/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get:153 http://mirror.einval.org/debian unstable/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-8 [60.6 kB] Get:154 http://mirror.einval.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-8 [305 kB] Get:155 http://mirror.einval.org/debian unstable/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-8 [53.7 kB] Get:156 http://mirror.einval.org/debian unstable/main amd64 libuuid1 amd64 2.39.2-4 [29.5 kB] Get:157 http://mirror.einval.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get:158 http://mirror.einval.org/debian unstable/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:159 http://mirror.einval.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:160 http://mirror.einval.org/debian unstable/main amd64 librdmacm1 amd64 48.0-1 [69.5 kB] Get:161 http://mirror.einval.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get:162 http://mirror.einval.org/debian unstable/main arm64 librdmacm1 arm64 48.0-1 [65.8 kB] Get:163 http://mirror.einval.org/debian unstable/main arm64 libfabric1 arm64 1.17.0-3 [476 kB] Get:164 http://mirror.einval.org/debian unstable/main amd64 libudev1 amd64 254.5-1 [120 kB] Get:165 http://mirror.einval.org/debian unstable/main amd64 libhwloc15 amd64 2.9.3-1 [155 kB] Get:166 http://mirror.einval.org/debian unstable/main amd64 libnuma-dev amd64 2.0.16-1 [35.0 kB] Get:167 http://mirror.einval.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-7 [393 kB] Get:168 http://mirror.einval.org/debian unstable/main amd64 libltdl-dev amd64 2.4.7-7 [164 kB] Get:169 http://mirror.einval.org/debian unstable/main amd64 libhwloc-dev amd64 2.9.3-1 [242 kB] Get:170 http://mirror.einval.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get:171 http://mirror.einval.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:172 http://mirror.einval.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:173 http://mirror.einval.org/debian unstable/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:174 http://mirror.einval.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get:175 http://mirror.einval.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:176 http://mirror.einval.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:177 http://mirror.einval.org/debian unstable/main amd64 libxnvctrl0 amd64 525.125.06-1 [13.5 kB] Get:178 http://mirror.einval.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [39.7 kB] Get:179 http://mirror.einval.org/debian unstable/main amd64 libhwloc-plugins amd64 2.9.3-1 [17.6 kB] Get:180 http://mirror.einval.org/debian unstable/main arm64 libpciaccess0 arm64 0.17-2 [50.4 kB] Get:181 http://mirror.einval.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get:182 http://mirror.einval.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:183 http://mirror.einval.org/debian unstable/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get:184 http://mirror.einval.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1 [772 kB] Get:185 http://mirror.einval.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get:186 http://mirror.einval.org/debian unstable/main arm64 libxnvctrl0 arm64 525.125.06-1 [13.4 kB] Get:187 http://mirror.einval.org/debian unstable/main arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [38.6 kB] Get:188 http://mirror.einval.org/debian unstable/main arm64 libhwloc15 arm64 2.9.3-1 [134 kB] Get:189 http://mirror.einval.org/debian unstable/main arm64 libhwloc-plugins arm64 2.9.3-1 [17.4 kB] Get:190 http://mirror.einval.org/debian unstable/main amd64 libnl-3-dev amd64 3.7.0-0.2+b1 [104 kB] Get:191 http://mirror.einval.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.7.0-0.2+b1 [203 kB] Get:192 http://mirror.einval.org/debian unstable/main amd64 libibverbs-dev amd64 48.0-1 [639 kB] Get:193 http://mirror.einval.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:194 http://mirror.einval.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:195 http://mirror.einval.org/debian unstable/main arm64 libmunge2 arm64 0.5.15-3 [19.1 kB] Get:196 http://mirror.einval.org/debian unstable/main amd64 libmunge2 amd64 0.5.15-3 [19.7 kB] Get:197 http://mirror.einval.org/debian unstable/main amd64 libpmix2 amd64 5.0.1-2 [643 kB] Get:198 http://mirror.einval.org/debian unstable/main amd64 libucx0 amd64 1.15.0-1 [940 kB] Get:199 http://mirror.einval.org/debian unstable/main amd64 libopenmpi3 amd64 4.1.6-1 [2427 kB] Get:200 http://mirror.einval.org/debian unstable/main arm64 openmpi-common all 4.1.6-1 [168 kB] Get:201 http://mirror.einval.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-3 [917 kB] Get:202 http://mirror.einval.org/debian unstable/main amd64 libpmix-dev amd64 5.0.1-2 [3876 kB] Get:203 http://mirror.einval.org/debian unstable/main arm64 libpmix2 arm64 5.0.1-2 [573 kB] Get:204 http://mirror.einval.org/debian unstable/main arm64 libucx0 arm64 1.15.0-1 [806 kB] Get:205 http://mirror.einval.org/debian unstable/main arm64 libopenmpi3 arm64 4.1.6-1 [2170 kB] Get:206 http://mirror.einval.org/debian unstable/main arm64 openmpi-bin arm64 4.1.6-1 [224 kB] Get:207 http://mirror.einval.org/debian unstable/main amd64 libopenmpi-dev amd64 4.1.6-1 [971 kB] Get:208 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get:209 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get:210 http://mirror.einval.org/debian unstable/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get:211 http://mirror.einval.org/debian unstable/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 226 MB in 3s (77.5 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 10419 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-6) ... Selecting previously unselected package libsemanage-common. Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) ... Setting up libsemanage-common (3.5-1) ... Selecting previously unselected package libsepol2:arm64. (Reading database ... 10440 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-1_arm64.deb ... Unpacking libsepol2:arm64 (3.5-1) ... Setting up libsepol2:arm64 (3.5-1) ... Selecting previously unselected package libsemanage2:arm64. (Reading database ... 10444 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1_arm64.deb ... Unpacking libsemanage2:arm64 (3.5-1) ... Setting up libsemanage2:arm64 (3.5-1) ... Selecting previously unselected package passwd. (Reading database ... 10448 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-3_arm64.deb ... Unpacking passwd (1:4.13+dfsg1-3) ... Setting up passwd (1:4.13+dfsg1-3) ... Shadow passwords are now on. Selecting previously unselected package adduser. (Reading database ... 10807 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package sensible-utils. (Reading database ... 10878 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.45-2_arm64.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../002-libmagic1_1%3a5.45-2_arm64.deb ... Unpacking libmagic1:arm64 (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.45-2_arm64.deb ... Unpacking file (1:5.45-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.21-13+b1_arm64.deb ... Unpacking gettext-base (0.21-13+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../005-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-3_arm64.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.39.2-4_arm64.deb ... Unpacking bsdextrautils (2.39.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../008-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... 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Setting up libatomic1-amd64-cross (13.2.0-2cross1) ... Setting up libhwasan0-amd64-cross (13.2.0-2cross1) ... Setting up libubsan1-amd64-cross (13.2.0-2cross1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libx11-6:arm64 (2:1.8.7-1) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-1) ... Setting up libibverbs1:arm64 (48.0-1) ... Setting up ibverbs-providers:arm64 (48.0-1) ... Setting up openssh-client (1:9.4p1-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxnvctrl0:arm64 (525.125.06-1) ... Setting up libgcc-13-dev-amd64-cross (13.2.0-2cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-amd64-cross (13.2.0-2cross1) ... Setting up librdmacm1:arm64 (48.0-1) ... Setting up libucx0:arm64 (1.15.0-1) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-2cross1) ... Setting up debhelper (13.11.7) ... Setting up libhwloc-plugins:arm64 (2.9.3-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libfabric1:arm64 (1.17.0-3) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-2cross1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-1) ... Setting up libpmix2:arm64 (5.0.1-2) ... Setting up libopenmpi3:arm64 (4.1.6-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-1) ... Setting up openmpi-bin (4.1.6-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-amd64 (12.10) ... Setting up libgcc-s1:amd64 (13.2.0-6) ... Setting up libc6:amd64 (2.37-12) ... Setting up libffi8:amd64 (3.4.4-1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up libmd0:amd64 (1.1.0-1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1) ... Setting up libhwasan0:amd64 (13.2.0-6) ... Setting up libasan8:amd64 (13.2.0-6) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libpsm2-2:amd64 (11.2.185-2) ... Setting up libtsan2:amd64 (13.2.0-6) ... Setting up libbsd0:amd64 (0.11.7-4) ... Setting up libstdc++6:amd64 (13.2.0-6) ... Setting up liblsan0:amd64 (13.2.0-6) ... Setting up libitm1:amd64 (13.2.0-6) ... Setting up libtinfo6:amd64 (6.4+20231016-1) ... Setting up libzstd1:amd64 (1.5.5+dfsg2-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libicu72:amd64 (72.1-4) ... Setting up liblzma5:amd64 (5.4.4-0.1) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up libssl3:amd64 (3.0.12-1) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-3) ... Setting up libcrypt1:amd64 (1:4.4.36-2) ... Setting up libcom-err2:amd64 (1.47.0-2+b1) ... Setting up libgomp1:amd64 (13.2.0-6) ... Setting up libcap2:amd64 (1:2.66-4) ... Setting up libkrb5support0:amd64 (1.20.1-5) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libz3-4:amd64 (4.8.12-3.1) ... Setting up libmunge2:amd64 (0.5.15-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-2) ... Setting up libquadmath0:amd64 (13.2.0-6) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libatomic1:amd64 (13.2.0-6) ... Setting up libuuid1:amd64 (2.39.2-4) ... Setting up libevent-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libk5crypto3:amd64 (1.20.1-5) ... Setting up libltdl7:amd64 (2.4.7-7) ... Setting up libudev1:amd64 (254.5-1) ... Setting up libubsan1:amd64 (13.2.0-6) ... Setting up libnl-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up libgcc-13-dev:amd64 (13.2.0-6) ... Setting up libcrypt-dev:amd64 (1:4.4.36-2) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libkrb5-3:amd64 (1.20.1-5) ... Setting up libpsm-infinipath1:amd64 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libisl23:amd64 (0.26-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3) ... Setting up libcc1-0:amd64 (13.2.0-6) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libpciaccess0:amd64 (0.17-2) ... Setting up libibverbs1:amd64 (48.0-1) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-8) ... Setting up ibverbs-providers:amd64 (48.0-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libxnvctrl0:amd64 (525.125.06-1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up libltdl-dev:amd64 (2.4.7-7) ... Setting up libmpfr6:amd64 (4.2.1-1) ... Setting up libevent-dev:amd64 (2.1.12-stable-8) ... Setting up libhwloc15:amd64 (2.9.3-1) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5) ... Setting up cpp-9:amd64 (9.5.0-4) ... Setting up libllvm16:amd64 (1:16.0.6-17) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up librdmacm1:amd64 (48.0-1) ... Setting up libucx0:amd64 (1.15.0-1) ... Setting up libibverbs-dev:amd64 (48.0-1) ... Setting up libhwloc-plugins:amd64 (2.9.3-1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up libclang-cpp16:amd64 (1:16.0.6-17) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libpmix2:amd64 (5.0.1-2) ... Setting up libopenmpi3:amd64 (4.1.6-1) ... Setting up libnsl-dev:amd64 (1.3.0-3) ... Setting up libc6-dev:amd64 (2.37-12) ... Setting up libstdc++-13-dev:amd64 (13.2.0-6) ... Setting up libnuma-dev:amd64 (2.0.16-1) ... Setting up libflang-16-dev:amd64 (1:16.0.6-17) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-3) ... Setting up libhwloc-dev:amd64 (2.9.3-1) ... Setting up libpmix-dev:amd64 (5.0.1-2) ... Setting up flang-16:amd64 (1:16.0.6-17) ... Setting up libopenmpi-dev:amd64 (4.1.6-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.41-6 dpkg-dev_1.22.0 g++-13_13.2.0-6 gcc-13_13.2.0-6 libc6-dev_2.37-12 libstdc++-13-dev_13.2.0-6 libstdc++-13-dev-amd64-cross_13.2.0-2cross1 libstdc++6_13.2.0-6 libstdc++6-amd64-cross_13.2.0-2cross1 linux-libc-dev_6.5.8-1 Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.2 bash_5.2.15-2+b6 binutils_2.41-6 binutils-aarch64-linux-gnu_2.41-6 binutils-common_2.41-6 binutils-x86-64-linux-gnu_2.41-6 bsdextrautils_2.39.2-4 bsdutils_1:2.39.2-4 build-essential_12.10 bzip2_1.0.8-5+b1 chrpath_0.16-2+b1 coreutils_9.1-1 cpp_4:13.2.0-1 cpp-13_13.2.0-6 cpp-13-x86-64-linux-gnu_13.2.0-2cross1 cpp-9_9.5.0-4 cpp-x86-64-linux-gnu_4:13.2.0-1 cross-config_2.6.20 crossbuild-essential-amd64_12.10 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.7 debian-archive-keyring_2023.4 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.0 dpkg-cross_2.6.20 dpkg-dev_1.22.0 dwz_0.15-1 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 flang-16_1:16.0.6-17 g++_4:13.2.0-1 g++-13_13.2.0-6 g++-13-x86-64-linux-gnu_13.2.0-2cross1 g++-x86-64-linux-gnu_4:13.2.0-1 gcc_4:13.2.0-1 gcc-13_13.2.0-6 gcc-13-base_13.2.0-6 gcc-13-cross-base_13.2.0-2cross1 gcc-13-x86-64-linux-gnu_13.2.0-2cross1 gcc-13-x86-64-linux-gnu-base_13.2.0-2cross1 gcc-9-base_9.5.0-4 gcc-x86-64-linux-gnu_4:13.2.0-1 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sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.2-4 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: phyml Binary: phyml Architecture: any Version: 3:3.3.20220408-3 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Kevin Murray , Étienne Mollier Homepage: http://www.atgc-montpellier.fr/phyml Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/phyml Vcs-Git: https://salsa.debian.org/med-team/phyml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkg-config, libopenmpi-dev, chrpath Package-List: phyml deb science optional arch=any Checksums-Sha1: 1dd5067ba9094eb54ff9f9c2c39c1c35ee750944 1803950 phyml_3.3.20220408.orig.tar.gz 900ecd3fb8c487cd822c9a41910ea200245869d5 26856 phyml_3.3.20220408-3.debian.tar.xz Checksums-Sha256: 9cef375c0186e8a8d4db72ac02148707624c97174ffac244167a138ceb9f65bd 1803950 phyml_3.3.20220408.orig.tar.gz ea1529f70db828cd7ea9b3a8fa0c68508b008268581782ce8e0f2960b95a4fe5 26856 phyml_3.3.20220408-3.debian.tar.xz Files: b35e641af77d7f058cf1ddc73be5e0b7 1803950 phyml_3.3.20220408.orig.tar.gz c428b64514d9b5b84482081427fd1293 26856 phyml_3.3.20220408-3.debian.tar.xz Dgit: 909b3d88c87473a003362f16e7d0108038e3206c debian archive/debian/3%3.3.20220408-3 https://git.dgit.debian.org/phyml -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmNZegcUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrBaxAAl0Ur2Q8fdsVnvBlO5pzGBATQrNW0 paC6/OyPfqgQyy7S8X2Jc2GpmSasyOHkbl0f3H8Q4tBLCGKOF7+yEH91+K7AVBmB NVKCrm94Xg8VGFAPybI6nw8s56Oa4vF8Yr6oYCp8lzH9n9Wqa5HYebpVJUa0GkD1 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unpacking phyml_3.3.20220408-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sse_only_if_supported.patch dpkg-source: info: applying no-configure-ac-date.patch dpkg-source: info: applying fix_declaration_of_temp.patch dpkg-source: info: applying fix_wrong_initialisation_of_array.patch dpkg-source: info: applying no-march-native.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying apply-cflags.patch dpkg-source: info: applying filter-sse3-intrinsics.patch dpkg-source: info: applying apply-ldflags.patch dpkg-source: info: applying typos.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package phyml dpkg-buildpackage: info: source version 3:3.3.20220408-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # save pdf from cleaning mv doc/phyml-manual.pdf . dh_auto_clean mv phyml-manual.pdf doc # remove temporary bin dir for phyml (see above hack) rm -rf debian/bin rm -rf doc/Makefile make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' dh_autoreconf --as-needed configure.ac:31: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:31: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:31: the top level configure.ac:52: warning: The macro `AC_FUNC_SETVBUF_REVERSED' is obsolete. Remove it and all references to SETVBUF_REVERSED. ./lib/autoconf/functions.m4:1766: AC_FUNC_SETVBUF_REVERSED is expanded from... configure.ac:52: the top level configure.ac:14: installing './compile' configure.ac:12: installing './config.guess' configure.ac:12: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # According to README you need different configure options to get different executables # Here we hack in a full build process for phyml executable # The hack includes saving the documentation from beeing cleaned up mv doc/phyml-manual.pdf . dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.amd64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-linux-gnu-gcc... none configure: "On arch x86_64-pc-linux-gnu use MSSE = -msse" checking for log in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for GNU libc compatible malloc... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for vprintf... yes checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for x86_64-linux-gnu-pkg-config... /usr/bin/x86_64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml]. Version 3.3.3:3.3.20220408-3 :. x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o main.o main.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o utilities.o utilities.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o optimiz.o optimiz.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o lk.o lk.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o bionj.o bionj.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o models.o models.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o free.o free.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o help.o help.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o simu.o simu.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o eigen.o eigen.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o pars.o pars.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o alrt.o alrt.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o interface.o interface.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o cl.o cl.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o spr.o spr.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o draw.o draw.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o stats.o stats.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o io.o io.c io.c: In function ‘Sub_Trees’: io.c:511:25: warning: ‘subs’ may be used uninitialized [-Wmaybe-uninitialized] 511 | subs = (char **)mRealloc(subs,*degree+1,sizeof(char *)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c:479:10: note: ‘subs’ was declared here 479 | char **subs; | ^~~~ x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o make.o make.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o nexus.o nexus.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o init.o init.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o xml.o xml.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o sse.o sse.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o avx.o avx.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o tbe.o tbe.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o ancestral.o ancestral.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o mixt.o mixt.c x86_64-linux-gnu-gcc -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o io.o make.o nexus.o init.o xml.o sse.o avx.o tbe.o ancestral.o mixt.o -lm -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ mkdir -p /<>/debian/bin mv src/phyml /<>/debian/bin/phyml /usr/bin/make distclean make[2]: Entering directory '/<>' Making distclean in src make[3]: Entering directory '/<>/src' test -z "phyml" || rm -f phyml rm -f *.o rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f ./.deps/alrt.Po rm -f ./.deps/ancestral.Po rm -f ./.deps/avx.Po rm -f ./.deps/bionj.Po rm -f ./.deps/cl.Po rm -f ./.deps/date.Po rm -f ./.deps/draw.Po rm -f ./.deps/eigen.Po rm -f ./.deps/free.Po rm -f ./.deps/help.Po rm -f ./.deps/init.Po rm -f ./.deps/interface.Po rm -f ./.deps/io.Po rm -f ./.deps/lk.Po rm -f ./.deps/location.Po rm -f ./.deps/main.Po rm -f ./.deps/make.Po rm -f ./.deps/mcmc.Po rm -f ./.deps/mg.Po rm -f ./.deps/mixt.Po rm -f ./.deps/models.Po rm -f ./.deps/nexus.Po rm -f ./.deps/optimiz.Po rm -f ./.deps/pars.Po rm -f ./.deps/phyml_mpi-alrt.Po rm -f ./.deps/phyml_mpi-ancestral.Po rm -f ./.deps/phyml_mpi-avx.Po rm -f ./.deps/phyml_mpi-bionj.Po rm -f ./.deps/phyml_mpi-cl.Po rm -f ./.deps/phyml_mpi-draw.Po rm -f ./.deps/phyml_mpi-eigen.Po rm -f ./.deps/phyml_mpi-free.Po rm -f ./.deps/phyml_mpi-help.Po rm -f ./.deps/phyml_mpi-init.Po rm -f ./.deps/phyml_mpi-interface.Po rm -f ./.deps/phyml_mpi-io.Po rm -f ./.deps/phyml_mpi-lk.Po rm -f ./.deps/phyml_mpi-main.Po rm -f ./.deps/phyml_mpi-make.Po rm -f ./.deps/phyml_mpi-mixt.Po rm -f ./.deps/phyml_mpi-models.Po rm -f ./.deps/phyml_mpi-mpi_boot.Po rm -f ./.deps/phyml_mpi-nexus.Po rm -f ./.deps/phyml_mpi-optimiz.Po rm -f ./.deps/phyml_mpi-pars.Po rm -f ./.deps/phyml_mpi-simu.Po rm -f ./.deps/phyml_mpi-spr.Po rm -f ./.deps/phyml_mpi-sse.Po rm -f ./.deps/phyml_mpi-stats.Po rm -f ./.deps/phyml_mpi-tbe.Po rm -f ./.deps/phyml_mpi-utilities.Po rm -f ./.deps/phyml_mpi-xml.Po rm -f ./.deps/phyrex.Po rm -f ./.deps/rates.Po rm -f ./.deps/rrw.Po rm -f ./.deps/rw.Po rm -f ./.deps/simu.Po rm -f ./.deps/slfv.Po rm -f ./.deps/spr.Po rm -f ./.deps/sse.Po rm -f ./.deps/stats.Po rm -f ./.deps/tbe.Po rm -f ./.deps/times.Po rm -f ./.deps/utilities.Po rm -f ./.deps/xml.Po rm -f Makefile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f cscope.out cscope.in.out cscope.po.out cscope.files make[3]: Leaving directory '/<>' rm -f config.status config.cache config.log configure.lineno config.status.lineno rm -f Makefile make[2]: Leaving directory '/<>' dh_auto_configure -- --enable-phyml-mpi ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu --enable-phyml-mpi configure: loading site script /etc/dpkg-cross/cross-config.amd64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-linux-gnu-gcc... none configure: "On arch x86_64-pc-linux-gnu use MSSE = -msse" checking for log in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for GNU libc compatible malloc... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for vprintf... yes checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for x86_64-linux-gnu-pkg-config... /usr/bin/x86_64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for mpi-c... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20220408-3 :. x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-main.o `test -f 'main.c' || echo './'`main.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-utilities.o `test -f 'utilities.c' || echo './'`utilities.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-optimiz.o `test -f 'optimiz.c' || echo './'`optimiz.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-lk.o `test -f 'lk.c' || echo './'`lk.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-bionj.o `test -f 'bionj.c' || echo './'`bionj.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-models.o `test -f 'models.c' || echo './'`models.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-free.o `test -f 'free.c' || echo './'`free.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-help.o `test -f 'help.c' || echo './'`help.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-simu.o `test -f 'simu.c' || echo './'`simu.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-eigen.o `test -f 'eigen.c' || echo './'`eigen.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-pars.o `test -f 'pars.c' || echo './'`pars.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-alrt.o `test -f 'alrt.c' || echo './'`alrt.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-interface.o `test -f 'interface.c' || echo './'`interface.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-cl.o `test -f 'cl.c' || echo './'`cl.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-spr.o `test -f 'spr.c' || echo './'`spr.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-draw.o `test -f 'draw.c' || echo './'`draw.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-stats.o `test -f 'stats.c' || echo './'`stats.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-io.o `test -f 'io.c' || echo './'`io.c io.c: In function ‘Sub_Trees’: io.c:511:25: warning: ‘subs’ may be used uninitialized [-Wmaybe-uninitialized] 511 | subs = (char **)mRealloc(subs,*degree+1,sizeof(char *)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c:479:10: note: ‘subs’ was declared here 479 | char **subs; | ^~~~ x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-make.o `test -f 'make.c' || echo './'`make.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-nexus.o `test -f 'nexus.c' || echo './'`nexus.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-init.o `test -f 'init.c' || echo './'`init.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-xml.o `test -f 'xml.c' || echo './'`xml.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-mixt.o `test -f 'mixt.c' || echo './'`mixt.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-tbe.o `test -f 'tbe.c' || echo './'`tbe.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-sse.o `test -f 'sse.c' || echo './'`sse.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-avx.o `test -f 'avx.c' || echo './'`avx.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-ancestral.o `test -f 'ancestral.c' || echo './'`ancestral.c x86_64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o phyml_mpi-mpi_boot.o `test -f 'mpi_boot.c' || echo './'`mpi_boot.c x86_64-linux-gnu-gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-ancestral.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ # mkdir -p /<>/debian/bin mv src/phyml-mpi /<>/debian/bin/phyml-mpi mv phyml-manual.pdf doc make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j1 install DESTDIR=/<>/debian/phyml AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20220408-3 :. x86_64-linux-gnu-gcc -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-ancestral.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lm Done. make[4]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/phyml/usr/bin' /usr/bin/install -c phyml-mpi '/<>/debian/phyml/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # install phyml binary we have kept safe above mkdir -p /<>/debian/phyml/usr/lib/phyml/bin mv /<>/debian/bin/* /<>/debian/phyml/usr/lib/phyml/bin chrpath --delete debian/phyml/usr/lib/phyml/bin/phyml* make[1]: Leaving directory '/<>' dh_install -a debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs mv /<>/debian/phyml/usr/share/doc/phyml/phyml-manual.pdf /<>/debian/phyml/usr/share/doc/phyml/phyml_manual.pdf make[1]: Leaving directory '/<>' dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/*/usr/share/doc -name "*.nxs" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.xml" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.mat" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.txt" -exec chmod -x \{\} \; chmod -x debian/*/usr/share/doc/phyml/examples/nucleic chmod -x debian/*/usr/share/doc/phyml/examples/proteic make[1]: Leaving directory '/<>' dh_missing -a debian/rules override_dh_dwz make[1]: Entering directory '/<>' echo "Do not run dh_dwz" Do not run dh_dwz make[1]: Leaving directory '/<>' dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'phyml' in '../phyml_3.3.20220408-3_amd64.deb'. dpkg-deb: building package 'phyml-dbgsym' in '../phyml-dbgsym_3.3.20220408-3_amd64.deb'. dpkg-genbuildinfo --build=any -O../phyml_3.3.20220408-3_amd64.buildinfo dpkg-genchanges --build=any -O../phyml_3.3.20220408-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-10-29T21:49:09Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ phyml_3.3.20220408-3_amd64.changes: ----------------------------------- Format: 1.8 Date: Wed, 26 Oct 2022 19:56:40 +0200 Source: phyml Binary: phyml phyml-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 3:3.3.20220408-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: phyml - Phylogenetic estimation using Maximum Likelihood Changes: phyml (3:3.3.20220408-3) unstable; urgency=medium . * d/watch: move to git tag scanning; fixes uscan following github changes. 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+------------------------------------------------------------------------------+ Format: 1.0 Source: phyml Binary: phyml phyml-dbgsym Architecture: amd64 Version: 3:3.3.20220408-3 Checksums-Md5: c30d0e91b2dd8bd65a817c2dc281d3b4 2079472 phyml-dbgsym_3.3.20220408-3_amd64.deb ed0b5e2c520f94a935083347ab349dd9 1105592 phyml_3.3.20220408-3_amd64.deb Checksums-Sha1: 2ee5a5654e7a283f4ceb120b45a02d2a01babdc5 2079472 phyml-dbgsym_3.3.20220408-3_amd64.deb 87bac0f528ee1842d5d3d38edaa8607ff43bd5b4 1105592 phyml_3.3.20220408-3_amd64.deb Checksums-Sha256: 23d0b434cecad13a5be6e76ad657535a155a63a0000e772710c63089465c2b2f 2079472 phyml-dbgsym_3.3.20220408-3_amd64.deb 3fcb06885af4a151ed65d5791d9d41df5eef328eddb95c5d35fbd97cffdfd873 1105592 phyml_3.3.20220408-3_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Sun, 29 Oct 2023 21:49:07 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: adduser (= 3.137), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.2), bash (= 5.2.15-2+b6), binutils (= 2.41-6), binutils-aarch64-linux-gnu (= 2.41-6), binutils-common (= 2.41-6), bsdextrautils (= 2.39.2-4), bsdutils (= 1:2.39.2-4), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), chrpath (= 0.16-2+b1), coreutils (= 9.1-1), cpp (= 4:13.2.0-1), cpp-13 (= 13.2.0-6), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.7), debianutils (= 5.14), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.0), dpkg-dev (= 1.22.0), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), flang-16 (= 1:16.0.6-17), g++ (= 4:13.2.0-1), g++-13 (= 13.2.0-6), gcc (= 4:13.2.0-1), gcc-13 (= 13.2.0-6), gcc-13-base (= 13.2.0-6), gettext (= 0.21-13+b1), gettext-base (= 0.21-13+b1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu1), ibverbs-providers (= 48.0-1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-6), libatomic1 (= 13.2.0-6), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-6), libblkid1 (= 2.39.2-4), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.37-12), libc-dev-bin (= 2.37-12), libc6 (= 2.37-12), libc6-dev (= 2.37-12), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcbor0.10 (= 0.10.2-1.1), libcc1-0 (= 13.2.0-6), libclang-cpp16 (= 1:16.0.6-17), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-6), libctf0 (= 2.41-6), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.11.7), libdpkg-perl (= 1.22.0), libedit2 (= 3.1-20230828-1), libelf1 (= 0.189-4), libevent-2.1-7 (= 2.1.12-stable-8), libevent-core-2.1-7 (= 2.1.12-stable-8), libevent-dev (= 2.1.12-stable-8), libevent-extra-2.1-7 (= 2.1.12-stable-8), libevent-openssl-2.1-7 (= 2.1.12-stable-8), libevent-pthreads-2.1-7 (= 2.1.12-stable-8), libfabric1 (= 1.17.0-3), libffi8 (= 3.4.4-1), libfido2-1 (= 1.13.0-1+b1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libflang-16-dev (= 1:16.0.6-17), libgcc-13-dev (= 13.2.0-6), libgcc-s1 (= 13.2.0-6), libgcrypt20 (= 1.10.2-3), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2), libgomp1 (= 13.2.0-6), libgpg-error0 (= 1.47-2), libgprofng0 (= 2.41-6), libgssapi-krb5-2 (= 1.20.1-5), libhwasan0 (= 13.2.0-6), libhwloc-dev (= 2.9.3-1), libhwloc-plugins (= 2.9.3-1), libhwloc15 (= 2.9.3-1), libibverbs-dev (= 48.0-1), libibverbs1 (= 48.0-1), libicu72 (= 72.1-4), libisl23 (= 0.26-3), libitm1 (= 13.2.0-6), libjansson4 (= 2.14-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libk5crypto3 (= 1.20.1-5), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5), libkrb5support0 (= 1.20.1-5), libllvm16 (= 1:16.0.6-17), liblsan0 (= 13.2.0-6), libltdl-dev (= 2.4.7-7), libltdl7 (= 2.4.7-7), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.4-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.2-4), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libmunge2 (= 0.5.15-3), libnl-3-200 (= 3.7.0-0.2+b1), libnl-3-dev (= 3.7.0-0.2+b1), libnl-route-3-200 (= 3.7.0-0.2+b1), libnl-route-3-dev (= 3.7.0-0.2+b1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnuma-dev (= 2.0.16-1), libnuma1 (= 2.0.16-1), libnumber-compare-perl (= 0.03-3), libopenmpi-dev (= 4.1.6-1), libopenmpi3 (= 4.1.6-1), libpam-modules (= 1.5.2-9.1), libpam-modules-bin (= 1.5.2-9.1), libpam-runtime (= 1.5.2-9.1), libpam0g (= 1.5.2-9.1), libpciaccess0 (= 0.17-2), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-9), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-1), libpmix-dev (= 5.0.1-2), libpmix2 (= 5.0.1-2), libpsm-infinipath1 (= 3.3+20.604758e7-6.2), libpsm2-2 (= 11.2.185-2), libquadmath0 (= 13.2.0-6), librdmacm1 (= 48.0-1), libseccomp2 (= 2.5.4-2), libselinux1 (= 3.5-1), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1), libsepol2 (= 3.5-1), libsframe1 (= 2.41-6), libsmartcols1 (= 2.39.2-4), libssl3 (= 3.0.12-1), libstdc++-13-dev (= 13.2.0-6), libstdc++6 (= 13.2.0-6), libsub-override-perl (= 0.09-4), libsystemd0 (= 254.5-1), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20231016-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-6), libubsan1 (= 13.2.0-6), libuchardet0 (= 0.0.7-1), libucx0 (= 1.15.0-1), libudev1 (= 254.5-1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-4), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.4-1+b1), libxml2 (= 2.9.14+dfsg-1.3), libxnvctrl0 (= 525.125.06-1), libz3-4 (= 4.8.12-3.1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.8-1), login (= 1:4.13+dfsg1-3), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-1), mawk (= 1.3.4.20230808-1), ncurses-base (= 6.4+20231016-1), ncurses-bin (= 6.4+20231016-1), ocl-icd-libopencl1 (= 2.3.2-1), openmpi-bin (= 4.1.6-1), openmpi-common (= 4.1.6-1), openssh-client (= 1:9.4p1-1), passwd (= 1:4.13+dfsg1-3), patch (= 2.7.6-7), perl (= 5.36.0-9), perl-base (= 5.36.0-9), perl-modules-5.36 (= 5.36.0-9), pkg-config (= 1.8.1-1), pkgconf (= 1.8.1-1), pkgconf-bin (= 1.8.1-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3), tar (= 1.34+dfsg-1.2), usrmerge (= 38), util-linux (= 2.39.2-4), xz-utils (= 5.4.4-0.1), zlib1g (= 1:1.2.13.dfsg-3), zlib1g-dev (= 1:1.2.13.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1666807000" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ phyml-dbgsym_3.3.20220408-3_amd64.deb ------------------------------------- new Debian package, version 2.0. size 2079472 bytes: control archive=604 bytes. 422 bytes, 12 lines control 212 bytes, 2 lines md5sums Package: phyml-dbgsym Source: phyml Version: 3:3.3.20220408-3 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 2198 Depends: phyml (= 3:3.3.20220408-3) Section: debug Priority: optional Description: debug symbols for phyml Build-Ids: 7ed90e35cf5b3a61fc1d7ec2fbaf8a845a9c2e63 b30cb0a72e71acf3de8c3e24b1d8acd1f9c7526b drwxr-xr-x root/root 0 2022-10-26 17:56 ./ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/lib/debug/.build-id/7e/ -rw-r--r-- root/root 1107848 2022-10-26 17:56 ./usr/lib/debug/.build-id/7e/d90e35cf5b3a61fc1d7ec2fbaf8a845a9c2e63.debug drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/lib/debug/.build-id/b3/ -rw-r--r-- root/root 1130704 2022-10-26 17:56 ./usr/lib/debug/.build-id/b3/0cb0a72e71acf3de8c3e24b1d8acd1f9c7526b.debug drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/share/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-26 17:56 ./usr/share/doc/phyml-dbgsym -> phyml phyml_3.3.20220408-3_amd64.deb ------------------------------ new Debian package, version 2.0. size 1105592 bytes: control archive=1896 bytes. 1678 bytes, 31 lines control 1779 bytes, 25 lines md5sums Package: phyml Version: 3:3.3.20220408-3 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 4431 Depends: libc6 (>= 2.34), libopenmpi3 (>= 4.1.6), openmpi-bin Section: science Priority: optional Homepage: http://www.atgc-montpellier.fr/phyml Description: Phylogenetic estimation using Maximum Likelihood PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). . PhyML was designed to process moderate to large data sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long can be analyzed. In practice however, the amount of memory required to process a data set is proportional of the product of the number of sequences by their length. Hence, a large number of sequences can only be processed provided that they are short. Also, PhyML can handle long sequences provided that they are not numerous. With most standard personal computers, the “comfort zone” for PhyML generally lies around 3 to 500 sequences less than 2,000 character long. . This package also includes PhyTime. drwxr-xr-x root/root 0 2022-10-26 17:56 ./ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/bin/ -rwxr-xr-x root/root 579 2022-10-26 17:56 ./usr/bin/phyml -rwxr-xr-x root/root 1221896 2022-10-26 17:56 ./usr/bin/phyml-mpi drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/lib/phyml/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/lib/phyml/bin/ -rwxr-xr-x root/root 1209608 2022-10-26 17:56 ./usr/lib/phyml/bin/phyml -rwxr-xr-x root/root 1221896 2022-10-26 17:56 ./usr/lib/phyml/bin/phyml-mpi drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/share/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/share/doc-base/ -rw-r--r-- root/root 202 2022-10-26 17:56 ./usr/share/doc-base/phyml.phyml drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/share/doc/phyml/ -rw-r--r-- root/root 2446 2022-10-26 17:56 ./usr/share/doc/phyml/README.Debian -rw-r--r-- root/root 1614 2022-10-26 17:56 ./usr/share/doc/phyml/changelog.Debian.gz -rw-r--r-- root/root 23260 2022-10-26 17:56 ./usr/share/doc/phyml/copyright drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/share/doc/phyml/examples/ -rw-r--r-- root/root 20905 2022-10-26 17:56 ./usr/share/doc/phyml/examples/example.nex drwxr-xr-x root/root 0 2022-04-08 15:01 ./usr/share/doc/phyml/examples/lg4x/ -rw-r--r-- root/root 1900 2022-04-08 15:01 ./usr/share/doc/phyml/examples/lg4x/X1.mat -rw-r--r-- root/root 1899 2022-04-08 15:01 ./usr/share/doc/phyml/examples/lg4x/X2.mat -rw-r--r-- root/root 1893 2022-04-08 15:01 ./usr/share/doc/phyml/examples/lg4x/X3.mat -rw-r--r-- root/root 1895 2022-04-08 15:01 ./usr/share/doc/phyml/examples/lg4x/X4.mat -rw-r--r-- root/root 1994 2022-04-08 15:01 ./usr/share/doc/phyml/examples/lg4x/lg4x.xml -rw-r--r-- root/root 2175 2022-04-08 15:01 ./usr/share/doc/phyml/examples/nexus_example.nxs -rw-r--r-- root/root 60771 2022-04-08 15:01 ./usr/share/doc/phyml/examples/nucleic drwxr-xr-x root/root 0 2022-04-08 15:01 ./usr/share/doc/phyml/examples/phyrex/ -rw-r--r-- root/root 9115 2022-04-08 15:01 ./usr/share/doc/phyml/examples/phyrex/flu.xml -rw-r--r-- root/root 70310 2022-04-08 15:01 ./usr/share/doc/phyml/examples/phyrex/h1n1.nxs -rw-r--r-- root/root 1784 2022-04-08 15:01 ./usr/share/doc/phyml/examples/phyrex/usa_coord.txt drwxr-xr-x root/root 0 2022-04-08 15:01 ./usr/share/doc/phyml/examples/phytime/ -rw-r--r-- root/root 2248 2022-04-08 15:01 ./usr/share/doc/phyml/examples/phytime/dating_example.xml -rw-r--r-- root/root 100171 2022-04-08 15:01 ./usr/share/doc/phyml/examples/phytime/seq.txt -rw-r--r-- root/root 25990 2022-04-08 15:01 ./usr/share/doc/phyml/examples/proteic -rw-r--r-- root/root 518525 2022-04-08 15:01 ./usr/share/doc/phyml/phyml_manual.pdf -rw-r--r-- root/root 1257 2022-10-26 17:56 ./usr/share/doc/phyml/run-unit-test drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-26 17:56 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2022-10-26 17:56 ./usr/share/man/man1/phyml-mpi.1.gz -> phyml.1.gz -rw-r--r-- root/root 2906 2022-10-26 17:56 ./usr/share/man/man1/phyml.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1333 B] Get:5 copy:/<>/apt_archive ./ Packages [1412 B] Fetched 3360 B in 0s (189 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: cpp-9:amd64 gcc-9-base:amd64 libcc1-0:amd64 libgmp10:amd64 libisl23:amd64 libmpc3:amd64 libmpfr6:amd64 Use 'apt autoremove' to remove them. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 13.5 MB of archives. After this operation, 53.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.0.12-1 [1383 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20230311 [153 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.65-1 [31.2 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.6-1 [47.3 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.40-1.1 [557 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.43.2-1 [812 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.40-1.1 [903 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.15.0-1 [2906 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b2 [66.1 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-2+b1 [10.4 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.008-2 [15.9 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b1 [22.9 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 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arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:73 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.92-2+b1 [308 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.083-1 [218 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.11-1 [10.5 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.72-1 [187 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.13-6 [39.0 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:96 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b3 [167 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3 [10.9 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1 [12.3 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b1 [17.1 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1 [11.2 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1 [42.3 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1 [95.4 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1 [97.2 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:109 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.38-1 [58.7 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.29-1 [28.5 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b1 [24.1 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b1 [8396 B] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1 [13.0 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-1+b2 [196 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b1 [72.2 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2 [19.9 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.86+ds-1 [32.8 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.10-6 [58.0 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.5 MB in 0s (52.3 MB/s) Selecting previously unselected package netbase. 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Setting up plzip (1.10-6) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:arm64 (4.37-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:arm64 (3.43.2-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:arm64 (2.5.6-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.38-1) ... Setting up libipc-system-simple-perl (1.30-2) ... 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Setting up libnet-ssleay-perl:arm64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.81-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libio-socket-ssl-perl (2.083-1) ... Setting up gpg (2.2.40-1.1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.59-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.72-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-12) ... Processing triggers for man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 29308 Build-Time: 330 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 76 Job: phyml_3:3.3.20220408-3 Lintian: pass Machine Architecture: arm64 Package: phyml Package-Time: 443 Source-Version: 3:3.3.20220408-3 Space: 29308 Status: successful Version: 3:3.3.20220408-3 -------------------------------------------------------------------------------- Finished at 2023-10-29T21:49:09Z Build needed 00:07:23, 29308k disk space