sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | phyml 3:3.3.20220408-4 (arm64) Sat, 17 May 2025 08:29:17 +0000 | +==============================================================================+ Package: phyml Version: 3:3.3.20220408-4 Source Version: 3:3.3.20220408-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-79c4f053-30f0-4644-b5fe-0a29500bfe12' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-R4DkS0/resolver-hlyEDI' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [208 kB] Get:2 http://localhost:3142/debian unstable/non-free Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/non-free Sources T-2025-05-17-0204.30-F-2025-05-17-0204.30.pdiff [31 B] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-05-17-0204.30-F-2025-05-17-0204.30.pdiff [1526 B] Get:5 http://localhost:3142/debian unstable/non-free Sources T-2025-05-17-0204.30-F-2025-05-17-0204.30.pdiff [31 B] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-05-17-0204.30-F-2025-05-17-0204.30.pdiff [1526 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-05-17-0204.30-F-2025-05-17-0204.30.pdiff [1631 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-05-17-0204.30-F-2025-05-17-0204.30.pdiff [1631 B] Get:8 http://localhost:3142/debian unstable/main arm64 Packages [10.0 MB] Fetched 10.4 MB in 2s (5344 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'phyml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/phyml.git Please use: git clone https://salsa.debian.org/med-team/phyml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1833 kB of source archives. Get:1 http://localhost:3142/debian unstable/main phyml 3:3.3.20220408-4 (dsc) [2256 B] Get:2 http://localhost:3142/debian unstable/main phyml 3:3.3.20220408-4 (tar) [1804 kB] Get:3 http://localhost:3142/debian unstable/main phyml 3:3.3.20220408-4 (diff) [27.0 kB] Fetched 1833 kB in 0s (114 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/phyml-R4DkS0/phyml-3.3.20220408' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-R4DkS0' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkgconf, mpi-default-dev, chrpath, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), pkgconf, mpi-default-dev, chrpath, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [749 B] Get:5 copy:/<>/apt_archive ./ Packages [792 B] Fetched 2150 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: adduser autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils chrpath cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file flang-19:arm64 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-14-aarch64-linux-gnu gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64 gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base ibverbs-providers ibverbs-providers:arm64 intltool-debian libamd-comgr2 libamd-comgr2:arm64 libamdhip64-5 libamdhip64-5:arm64 libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcap2:arm64 libcbor0.10 libclang-cpp19:arm64 libcom-err2 libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdrm-amdgpu1 libdrm-amdgpu1:arm64 libdrm-common libdrm2 libdrm2:arm64 libedit2 libedit2:arm64 libelf1t64 libelf1t64:arm64 libevent-2.1-7t64:arm64 libevent-core-2.1-7t64 libevent-core-2.1-7t64:arm64 libevent-dev:arm64 libevent-extra-2.1-7t64:arm64 libevent-openssl-2.1-7t64:arm64 libevent-pthreads-2.1-7t64 libevent-pthreads-2.1-7t64:arm64 libfabric1 libfabric1:arm64 libfakeroot libffi8 libffi8:arm64 libfido2-1 libfile-stripnondeterminism-perl libflang-19-dev:arm64 libfuse3-4 libfuse3-4:arm64 libgcc-14-dev:arm64 libgcc-14-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libhsa-runtime64-1 libhsa-runtime64-1:arm64 libhsakmt1 libhsakmt1:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libhwloc-dev:arm64 libhwloc-plugins libhwloc-plugins:arm64 libhwloc15 libhwloc15:arm64 libibmad5 libibmad5:arm64 libibumad3 libibumad3:arm64 libibverbs-dev:arm64 libibverbs1 libibverbs1:arm64 libitm1:arm64 libitm1-arm64-cross libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libllvm17t64:arm64 libllvm19:arm64 liblsan0:arm64 liblsan0-arm64-cross libltdl-dev:arm64 libltdl7:arm64 liblzma5:arm64 libmagic-mgc libmagic1t64 libmd0:arm64 libmunge2 libmunge2:arm64 libnl-3-200 libnl-3-200:arm64 libnl-3-dev:arm64 libnl-route-3-200 libnl-route-3-200:arm64 libnl-route-3-dev:arm64 libnuma-dev:arm64 libnuma1 libnuma1:arm64 libopenmpi-dev:arm64 libopenmpi40 libopenmpi40:arm64 libpciaccess0 libpciaccess0:arm64 libpipeline1 libpkgconf3 libpmix-dev:arm64 libpmix2t64 libpmix2t64:arm64 libpsm2-2 librdmacm1t64 librdmacm1t64:arm64 libssl3t64:arm64 libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libtinfo6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libucx0 libucx0:arm64 libudev1:arm64 libunistring5 libx11-6 libx11-6:arm64 libx11-data libxau6 libxau6:arm64 libxcb1 libxcb1:arm64 libxdmcp6 libxdmcp6:arm64 libxext6 libxext6:arm64 libxml2 libxml2:arm64 libxnvctrl0 libxnvctrl0:arm64 libz3-4 libz3-4:arm64 libze1 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db mpi-default-dev:arm64 ocl-icd-libopencl1 ocl-icd-libopencl1:arm64 openmpi-bin openmpi-common openssh-client pkgconf:arm64 pkgconf-bin po-debconf sensible-utils zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: liblocale-gettext-perl cron quota autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 fuse3 fuse3:arm64 krb5-doc krb5-user libhwloc-contrib-plugins libjs-jquery-ui-docs libtool-doc:arm64 openmpi-doc:arm64 pciutils pciutils:arm64 libstdc++-14-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libidn2-0:arm64 m4-doc apparmor less www-browser opencl-icd opencl-icd:arm64 gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl javascript-common krb5-locales libcoarrays-openmpi-dev:arm64 libltdl-dev xauth libmail-sendmail-perl The following NEW packages will be installed: adduser autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils chrpath cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file flang-19:arm64 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-14-aarch64-linux-gnu gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64 gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base ibverbs-providers ibverbs-providers:arm64 intltool-debian libamd-comgr2 libamd-comgr2:arm64 libamdhip64-5 libamdhip64-5:arm64 libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcap2:arm64 libcbor0.10 libclang-cpp19:arm64 libcom-err2 libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdrm-amdgpu1 libdrm-amdgpu1:arm64 libdrm-common libdrm2 libdrm2:arm64 libedit2 libedit2:arm64 libelf1t64 libelf1t64:arm64 libevent-2.1-7t64:arm64 libevent-core-2.1-7t64 libevent-core-2.1-7t64:arm64 libevent-dev:arm64 libevent-extra-2.1-7t64:arm64 libevent-openssl-2.1-7t64:arm64 libevent-pthreads-2.1-7t64 libevent-pthreads-2.1-7t64:arm64 libfabric1 libfabric1:arm64 libfakeroot libffi8 libffi8:arm64 libfido2-1 libfile-stripnondeterminism-perl libflang-19-dev:arm64 libfuse3-4 libfuse3-4:arm64 libgcc-14-dev:arm64 libgcc-14-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libhsa-runtime64-1 libhsa-runtime64-1:arm64 libhsakmt1 libhsakmt1:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libhwloc-dev:arm64 libhwloc-plugins libhwloc-plugins:arm64 libhwloc15 libhwloc15:arm64 libibmad5 libibmad5:arm64 libibumad3 libibumad3:arm64 libibverbs-dev:arm64 libibverbs1 libibverbs1:arm64 libitm1:arm64 libitm1-arm64-cross libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libllvm17t64:arm64 libllvm19:arm64 liblsan0:arm64 liblsan0-arm64-cross libltdl-dev:arm64 libltdl7:arm64 liblzma5:arm64 libmagic-mgc libmagic1t64 libmd0:arm64 libmunge2 libmunge2:arm64 libnl-3-200 libnl-3-200:arm64 libnl-3-dev:arm64 libnl-route-3-200 libnl-route-3-200:arm64 libnl-route-3-dev:arm64 libnuma-dev:arm64 libnuma1 libnuma1:arm64 libopenmpi-dev:arm64 libopenmpi40 libopenmpi40:arm64 libpciaccess0 libpciaccess0:arm64 libpipeline1 libpkgconf3 libpmix-dev:arm64 libpmix2t64 libpmix2t64:arm64 libpsm2-2 librdmacm1t64 librdmacm1t64:arm64 libssl3t64:arm64 libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libtinfo6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libucx0 libucx0:arm64 libudev1:arm64 libunistring5 libx11-6 libx11-6:arm64 libx11-data libxau6 libxau6:arm64 libxcb1 libxcb1:arm64 libxdmcp6 libxdmcp6:arm64 libxext6 libxext6:arm64 libxml2 libxml2:arm64 libxnvctrl0 libxnvctrl0:arm64 libz3-4 libz3-4:arm64 libze1 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db mpi-default-dev:arm64 ocl-icd-libopencl1 ocl-icd-libopencl1:arm64 openmpi-bin openmpi-common openssh-client pkgconf:arm64 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 198 newly installed, 0 to remove and 0 not upgraded. Need to get 299 MB of archives. After this operation, 1878 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://localhost:3142/debian unstable/main amd64 adduser all 3.152 [191 kB] Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:6 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:7 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:9 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-8 [1187 kB] Get:10 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:12 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:20 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:22 http://localhost:3142/debian unstable/main amd64 openssh-client amd64 1:10.0p1-5 [984 kB] Get:23 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:24 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:25 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:26 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:27 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:28 http://localhost:3142/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.44-3 [1687 kB] Get:29 http://localhost:3142/debian unstable/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get:30 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu-base amd64 14.2.0-19cross1 [49.7 kB] Get:31 http://localhost:3142/debian unstable/main amd64 cpp-14-aarch64-linux-gnu amd64 14.2.0-19cross1 [11.2 MB] Get:32 http://localhost:3142/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:14.2.0-1 [4844 B] Get:33 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libc6-arm64-cross all 2.41-6cross2 [1165 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libgcc-s1-arm64-cross all 14.2.0-19cross1 [54.1 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libgomp1-arm64-cross all 14.2.0-19cross1 [91.7 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libitm1-arm64-cross all 14.2.0-19cross1 [26.0 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libatomic1-arm64-cross all 14.2.0-19cross1 [10.3 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libasan8-arm64-cross all 14.2.0-19cross1 [436 kB] Get:40 http://localhost:3142/debian unstable/main amd64 liblsan0-arm64-cross all 14.2.0-19cross1 [201 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libtsan2-arm64-cross all 14.2.0-19cross1 [416 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libstdc++6-arm64-cross all 14.2.0-19cross1 [546 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libubsan1-arm64-cross all 14.2.0-19cross1 [186 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libhwasan0-arm64-cross all 14.2.0-19cross1 [256 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-arm64-cross all 14.2.0-19cross1 [2452 kB] Get:46 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu amd64 14.2.0-19cross1 [21.6 MB] Get:47 http://localhost:3142/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:14.2.0-1 [1448 B] Get:48 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-arm64-cross all 6.12.17-1cross2 [2345 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libc6-dev-arm64-cross all 2.41-6cross2 [1616 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-arm64-cross all 14.2.0-19cross1 [2552 kB] Get:51 http://localhost:3142/debian unstable/main amd64 g++-14-aarch64-linux-gnu amd64 14.2.0-19cross1 [12.2 MB] Get:52 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:53 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B] Get:54 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:56 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:59 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:60 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:61 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:64 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:65 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:66 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:67 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:69 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:70 http://localhost:3142/debian unstable/main arm64 gcc-14-base arm64 14.2.0-19 [49.4 kB] Get:71 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 14.2.0-19 [54.1 kB] Get:72 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.41-7 [2483 kB] Get:73 http://localhost:3142/debian unstable/main arm64 libmd0 arm64 1.1.0-2+b1 [33.7 kB] Get:74 http://localhost:3142/debian unstable/main arm64 libbsd0 arm64 0.12.2-2 [129 kB] Get:75 http://localhost:3142/debian unstable/main arm64 libtinfo6 arm64 6.5+20250216-2 [341 kB] Get:76 http://localhost:3142/debian unstable/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get:77 http://localhost:3142/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get:78 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 14.2.0-19 [638 kB] Get:79 http://localhost:3142/debian unstable/main arm64 liblzma5 arm64 5.8.1-1 [303 kB] Get:80 http://localhost:3142/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB] Get:81 http://localhost:3142/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB] Get:82 http://localhost:3142/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get:83 http://localhost:3142/debian unstable/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [266 kB] Get:84 http://localhost:3142/debian unstable/main arm64 libllvm19 arm64 1:19.1.7-3 [23.3 MB] Get:85 http://localhost:3142/debian unstable/main arm64 libclang-cpp19 arm64 1:19.1.7-3 [12.0 MB] Get:86 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 14.2.0-19 [124 kB] Get:87 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 14.2.0-19 [24.2 kB] Get:88 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 14.2.0-19 [10.1 kB] Get:89 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 14.2.0-19 [2578 kB] Get:90 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 14.2.0-19 [1161 kB] Get:91 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 14.2.0-19 [2383 kB] Get:92 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 14.2.0-19 [1039 kB] Get:93 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 14.2.0-19 [1442 kB] Get:94 http://localhost:3142/debian unstable/main arm64 libgcc-14-dev arm64 14.2.0-19 [2359 kB] Get:95 http://localhost:3142/debian unstable/main arm64 libcrypt1 arm64 1:4.4.38-1 [91.8 kB] Get:96 http://localhost:3142/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.38-1 [123 kB] Get:97 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.41-7 [1621 kB] Get:98 http://localhost:3142/debian unstable/main arm64 libstdc++-14-dev arm64 14.2.0-19 [2295 kB] Get:99 http://localhost:3142/debian unstable/main arm64 libflang-19-dev arm64 1:19.1.7-3 [16.4 MB] Get:100 http://localhost:3142/debian unstable/main arm64 flang-19 arm64 1:19.1.7-3 [22.0 MB] Get:101 http://localhost:3142/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-2 [59.4 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-2 [182 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libibverbs1 amd64 56.1-1 [62.4 kB] Get:104 http://localhost:3142/debian unstable/main amd64 ibverbs-providers amd64 56.1-1 [357 kB] Get:105 http://localhost:3142/debian unstable/main arm64 libnl-3-200 arm64 3.7.0-2 [57.1 kB] Get:106 http://localhost:3142/debian unstable/main arm64 libnl-route-3-200 arm64 3.7.0-2 [167 kB] Get:107 http://localhost:3142/debian unstable/main arm64 libibverbs1 arm64 56.1-1 [58.9 kB] Get:108 http://localhost:3142/debian unstable/main arm64 ibverbs-providers arm64 56.1-1 [333 kB] Get:109 http://localhost:3142/debian unstable/main arm64 libllvm17t64 arm64 1:17.0.6-21+b1 [21.3 MB] Get:110 http://localhost:3142/debian unstable/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b2 [12.1 MB] Get:111 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-21+b1 [23.6 MB] Get:114 http://localhost:3142/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get:115 http://localhost:3142/debian unstable/main amd64 libdrm-common all 2.4.124-2 [8288 B] Get:116 http://localhost:3142/debian unstable/main arm64 libdrm2 arm64 2.4.124-2 [38.3 kB] Get:117 http://localhost:3142/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.124-2 [21.8 kB] Get:118 http://localhost:3142/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get:119 http://localhost:3142/debian unstable/main arm64 libnuma1 arm64 2.0.19-1 [21.6 kB] Get:120 http://localhost:3142/debian unstable/main arm64 libhsakmt1 arm64 6.2.4+ds-1 [58.3 kB] Get:121 http://localhost:3142/debian unstable/main arm64 libhsa-runtime64-1 arm64 6.1.2-3 [302 kB] Get:122 http://localhost:3142/debian unstable/main arm64 libamdhip64-5 arm64 5.7.1-6 [8824 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libdrm2 amd64 2.4.124-2 [39.0 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.124-2 [22.6 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-6 [8924 kB] Get:129 http://localhost:3142/debian unstable/main arm64 libcap2 arm64 1:2.75-7 [27.5 kB] Get:130 http://localhost:3142/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get:131 http://localhost:3142/debian unstable/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10+b1 [126 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get:133 http://localhost:3142/debian unstable/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10+b1 [102 kB] Get:134 http://localhost:3142/debian unstable/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10+b1 [54.4 kB] Get:135 http://localhost:3142/debian unstable/main arm64 libssl3t64 arm64 3.5.0-1 [2747 kB] Get:136 http://localhost:3142/debian unstable/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10+b1 [60.4 kB] Get:137 http://localhost:3142/debian unstable/main arm64 libevent-dev arm64 2.1.12-stable-10+b1 [304 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:140 http://localhost:3142/debian unstable/main amd64 librdmacm1t64 amd64 56.1-1 [70.4 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libfabric1 amd64 2.1.0-1.1 [706 kB] Get:142 http://localhost:3142/debian unstable/main arm64 librdmacm1t64 arm64 56.1-1 [67.2 kB] Get:143 http://localhost:3142/debian unstable/main arm64 libfabric1 arm64 2.1.0-1.1 [548 kB] Get:144 http://localhost:3142/debian unstable/main arm64 libfuse3-4 arm64 3.17.2-1 [93.1 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libfuse3-4 amd64 3.17.2-1 [98.7 kB] Get:146 http://localhost:3142/debian unstable/main arm64 libudev1 arm64 257.5-2 [143 kB] Get:147 http://localhost:3142/debian unstable/main arm64 libhwloc15 arm64 2.12.0-4 [142 kB] Get:148 http://localhost:3142/debian unstable/main arm64 libnuma-dev arm64 2.0.19-1 [37.6 kB] Get:149 http://localhost:3142/debian unstable/main arm64 libltdl7 arm64 2.5.4-4 [415 kB] Get:150 http://localhost:3142/debian unstable/main arm64 libltdl-dev arm64 2.5.4-4 [168 kB] Get:151 http://localhost:3142/debian unstable/main arm64 libhwloc-dev arm64 2.12.0-4 [239 kB] Get:152 http://localhost:3142/debian unstable/main arm64 libpciaccess0 arm64 0.17-3+b3 [51.2 kB] Get:153 http://localhost:3142/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get:154 http://localhost:3142/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get:155 http://localhost:3142/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get:156 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:157 http://localhost:3142/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get:158 http://localhost:3142/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get:159 http://localhost:3142/debian unstable/main arm64 libxnvctrl0 arm64 535.171.04-1+b2 [14.0 kB] Get:160 http://localhost:3142/debian unstable/main arm64 ocl-icd-libopencl1 arm64 2.3.3-1 [42.7 kB] Get:161 http://localhost:3142/debian unstable/main arm64 libhwloc-plugins arm64 2.12.0-4 [18.1 kB] Get:162 http://localhost:3142/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:168 http://localhost:3142/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libze1 amd64 1.20.6-1 [473 kB] Get:170 http://localhost:3142/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libhwloc15 amd64 2.12.0-4 [164 kB] Get:172 http://localhost:3142/debian unstable/main amd64 libhwloc-plugins amd64 2.12.0-4 [23.5 kB] Get:173 http://localhost:3142/debian unstable/main amd64 libibumad3 amd64 56.1-1 [30.0 kB] Get:174 http://localhost:3142/debian unstable/main amd64 libibmad5 amd64 56.1-1 [44.5 kB] Get:175 http://localhost:3142/debian unstable/main arm64 libibumad3 arm64 56.1-1 [28.6 kB] Get:176 http://localhost:3142/debian unstable/main arm64 libibmad5 arm64 56.1-1 [42.4 kB] Get:177 http://localhost:3142/debian unstable/main arm64 libnl-3-dev arm64 3.7.0-2 [102 kB] Get:178 http://localhost:3142/debian unstable/main arm64 libnl-route-3-dev arm64 3.7.0-2 [199 kB] Get:179 http://localhost:3142/debian unstable/main arm64 libibverbs-dev arm64 56.1-1 [642 kB] Get:180 http://localhost:3142/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:181 http://localhost:3142/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:182 http://localhost:3142/debian unstable/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get:183 http://localhost:3142/debian unstable/main arm64 libmunge2 arm64 0.5.16-1 [19.2 kB] Get:184 http://localhost:3142/debian unstable/main arm64 libpmix2t64 arm64 5.0.7-1 [585 kB] Get:185 http://localhost:3142/debian unstable/main arm64 libucx0 arm64 1.18.1+ds-2+b1 [1016 kB] Get:186 http://localhost:3142/debian unstable/main arm64 libopenmpi40 arm64 5.0.7-1 [2087 kB] Get:187 http://localhost:3142/debian unstable/main amd64 openmpi-common all 5.0.7-1 [97.2 kB] Get:188 http://localhost:3142/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get:189 http://localhost:3142/debian unstable/main arm64 libpmix-dev arm64 5.0.7-1 [3947 kB] Get:190 http://localhost:3142/debian unstable/main amd64 libpmix2t64 amd64 5.0.7-1 [660 kB] Get:191 http://localhost:3142/debian unstable/main amd64 libucx0 amd64 1.18.1+ds-2+b1 [1196 kB] Get:192 http://localhost:3142/debian unstable/main amd64 libopenmpi40 amd64 5.0.7-1 [2365 kB] Get:193 http://localhost:3142/debian unstable/main amd64 openmpi-bin amd64 5.0.7-1 [189 kB] Get:194 http://localhost:3142/debian unstable/main arm64 libopenmpi-dev arm64 5.0.7-1 [1089 kB] Get:195 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:196 http://localhost:3142/debian unstable/main arm64 mpi-default-dev arm64 1.18 [3372 B] Get:197 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:198 http://localhost:3142/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Preconfiguring packages ... Fetched 299 MB in 1s (211 MB/s) Selecting previously unselected package adduser. (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.152_all.deb ... Unpacking adduser (3.152) ... Setting up adduser (3.152) ... Selecting previously unselected package sensible-utils. (Reading database ... 12971 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... 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Setting up libpciaccess0:amd64 (0.17-3+b3) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:arm64 (14.2.0-19) ... Setting up libcbor0.10:amd64 (0.10.2-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libibumad3:amd64 (56.1-1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up binutils-aarch64-linux-gnu (2.44-3) ... Setting up gcc-14-cross-base (14.2.0-19cross1) ... Setting up libibmad5:amd64 (56.1-1) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up file (1:5.46-5) ... Setting up libze1:amd64 (1.20.6-1) ... Setting up libfakeroot:amd64 (1.37.1.2-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20240727.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libmunge2:amd64 (0.5.16-1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libc6-arm64-cross (2.41-6cross2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libhwloc15:amd64 (2.12.0-4) ... Setting up autopoint (0.23.1-2) ... Setting up libitm1-arm64-cross (14.2.0-19cross1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up autoconf (2.72-3.1) ... Setting up linux-libc-dev-arm64-cross (6.12.17-1cross2) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up libnuma1:amd64 (2.0.19-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up ocl-icd-libopencl1:amd64 (2.3.3-1) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libnl-3-200:amd64 (3.7.0-2) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.7-1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfuse3-4:amd64 (3.17.2-1) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up gcc-14-aarch64-linux-gnu-base:amd64 (14.2.0-19cross1) ... Setting up libdrm-common (2.4.124-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up chrpath (0.18-1) ... Setting up libgcc-s1-arm64-cross (14.2.0-19cross1) ... Setting up libatomic1-arm64-cross (14.2.0-19cross1) ... 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Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libdrm2:amd64 (2.4.124-2) ... Setting up cpp-14-aarch64-linux-gnu (14.2.0-19cross1) ... Setting up groff-base (1.23.0-8) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libasan8-arm64-cross (14.2.0-19cross1) ... Setting up libtsan2-arm64-cross (14.2.0-19cross1) ... Setting up libdrm-amdgpu1:amd64 (2.4.124-2) ... Setting up libibverbs1:amd64 (56.1-1) ... Setting up libubsan1-arm64-cross (14.2.0-19cross1) ... Setting up ibverbs-providers:amd64 (56.1-1) ... Setting up openssh-client (1:10.0p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhwloc-plugins:amd64 (2.12.0-4) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cpp-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libpmix2t64:amd64 (5.0.7-1) ... Setting up libgcc-14-dev-arm64-cross (14.2.0-19cross1) ... 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Setting up openmpi-bin (5.0.7-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libgcc-s1:arm64 (14.2.0-19) ... Setting up libc6:arm64 (2.41-7) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up libnuma1:arm64 (2.0.19-1) ... Setting up libdrm2:arm64 (2.4.124-2) ... Setting up libmd0:arm64 (1.1.0-2+b1) ... Setting up ocl-icd-libopencl1:arm64 (2.3.3-1) ... Setting up libhwasan0:arm64 (14.2.0-19) ... Setting up libasan8:arm64 (14.2.0-19) ... Setting up libnl-3-200:arm64 (3.7.0-2) ... Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libtsan2:arm64 (14.2.0-19) ... Setting up libfuse3-4:arm64 (3.17.2-1) ... Setting up libbsd0:arm64 (0.12.2-2) ... Setting up libstdc++6:arm64 (14.2.0-19) ... Setting up liblsan0:arm64 (14.2.0-19) ... Setting up libitm1:arm64 (14.2.0-19) ... Setting up libtinfo6:arm64 (6.5+20250216-2) ... Setting up libdrm-amdgpu1:arm64 (2.4.124-2) ... Setting up libzstd1:arm64 (1.5.7+dfsg-1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up liblzma5:arm64 (5.8.1-1) ... Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libedit2:arm64 (3.1-20250104-1) ... Setting up libibumad3:arm64 (56.1-1) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up zlib1g:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:arm64 (1:4.4.38-1) ... Setting up libibmad5:arm64 (56.1-1) ... Setting up libgomp1:arm64 (14.2.0-19) ... Setting up libcap2:arm64 (1:2.75-7) ... Setting up libelf1t64:arm64 (0.192-4) ... 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Setting up libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libflang-19-dev:arm64 (1:19.1.7-3) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libnuma-dev:arm64 (2.0.19-1) ... Setting up libxnvctrl0:arm64 (535.171.04-1+b2) ... Setting up libnl-route-3-dev:arm64 (3.7.0-2) ... Setting up libltdl-dev:arm64 (2.5.4-4) ... Setting up libllvm17t64:arm64 (1:17.0.6-21+b1) ... Setting up libevent-dev:arm64 (2.1.12-stable-10+b1) ... Setting up libhwloc15:arm64 (2.12.0-4) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libhsa-runtime64-1:arm64 (6.1.2-3) ... Setting up librdmacm1t64:arm64 (56.1-1) ... Setting up libhwloc-dev:arm64 (2.12.0-4) ... Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libclang-cpp19:arm64 (1:19.1.7-3) ... Setting up flang-19:arm64 (1:19.1.7-3) ... Setting up libfabric1:arm64 (2.1.0-1.1) ... Setting up libibverbs-dev:arm64 (56.1-1) ... Setting up libhwloc-plugins:arm64 (2.12.0-4) ... Setting up libamdhip64-5:arm64 (5.7.1-6) ... Setting up libpmix2t64:arm64 (5.0.7-1) ... Setting up libpmix-dev:arm64 (5.0.7-1) ... Setting up libucx0:arm64 (1.18.1+ds-2+b1) ... Setting up libopenmpi40:arm64 (5.0.7-1) ... Setting up libopenmpi-dev:arm64 (5.0.7-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up mpi-default-dev:arm64 (1.18) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.41-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-7 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-arm64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-arm64-cross_14.2.0-19cross1 linux-libc-dev_6.12.27-1 Package versions: adduser_3.152 apt_3.0.1 apt-utils_3.0.1 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 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tzdata_2025b-3 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: phyml Binary: phyml Architecture: any Version: 3:3.3.20220408-4 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Kevin Murray , Étienne Mollier Homepage: http://www.atgc-montpellier.fr/phyml Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/phyml Vcs-Git: https://salsa.debian.org/med-team/phyml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkgconf, mpi-default-dev, chrpath Package-List: phyml deb science optional arch=any Checksums-Sha1: 1dd5067ba9094eb54ff9f9c2c39c1c35ee750944 1803950 phyml_3.3.20220408.orig.tar.gz 4ca11e948f0e7e8585f0daad5f709e2be3170331 27020 phyml_3.3.20220408-4.debian.tar.xz Checksums-Sha256: 9cef375c0186e8a8d4db72ac02148707624c97174ffac244167a138ceb9f65bd 1803950 phyml_3.3.20220408.orig.tar.gz a76294e8f8b118a105217755ea67701870ffed751c8940b54168f3b578ff1fad 27020 phyml_3.3.20220408-4.debian.tar.xz Files: b35e641af77d7f058cf1ddc73be5e0b7 1803950 phyml_3.3.20220408.orig.tar.gz 48050b4235d2e54572c398938a25a5e4 27020 phyml_3.3.20220408-4.debian.tar.xz Dgit: c34b7a51c3c1b3dedfd37ab64fe7ee062fb94633 debian archive/debian/3%3.3.20220408-4 https://git.dgit.debian.org/phyml -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcvtLQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdobew/6Anprva8MJNpL/ScGgyqU5HGqZpSG WAeG7rfbMwAAWbhsJfec1I9QgB+Usrrio+t8Pf8Hfp2khAWeAN7UBPjkGr8CAlm2 7LKnMdqhFMdSiQrEHsG51Ad1aVi5UV8kEzApUjYjgLTaLn/DqHFqn3r80Q5/HIYD MLL/LFqN/IlyYfhpe8TZ1z3u/bcvZIStdKkUcVFHERSZfn5oyKwNTqdIgryqoWlI 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fix_declaration_of_temp.patch dpkg-source: info: applying fix_wrong_initialisation_of_array.patch dpkg-source: info: applying no-march-native.patch dpkg-source: info: applying apply-cflags.patch dpkg-source: info: applying filter-sse3-intrinsics.patch dpkg-source: info: applying apply-ldflags.patch dpkg-source: info: applying typos.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.rzS8upg2dD/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-79c4f053-30f0-4644-b5fe-0a29500bfe12 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package phyml dpkg-buildpackage: info: source version 3:3.3.20220408-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # save pdf from cleaning mv doc/phyml-manual.pdf . dh_auto_clean mv phyml-manual.pdf doc # remove temporary bin dir for phyml (see above hack) rm -rf debian/bin rm -rf doc/Makefile make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' dh_autoreconf --as-needed configure.ac:31: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:31: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:31: the top level configure.ac:52: warning: The macro 'AC_FUNC_SETVBUF_REVERSED' is obsolete. Remove it and all references to SETVBUF_REVERSED. ./lib/autoconf/functions.m4:1785: AC_FUNC_SETVBUF_REVERSED is expanded from... configure.ac:52: the top level configure.ac:14: installing './compile' configure.ac:12: installing './config.guess' configure.ac:12: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # According to README you need different configure options to get different executables # Here we hack in a full build process for phyml executable # The hack includes saving the documentation from beeing cleaned up mv doc/phyml-manual.pdf . dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to enable C11 features... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-gcc... none configure: "Do not use MSSE = because not available on arch aarch64-unknown-linux-gnu" checking for log in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml]. Version 3.3.3:3.3.20220408-4 :. aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o main.o main.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o utilities.o utilities.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o optimiz.o optimiz.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o lk.o lk.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o bionj.o bionj.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o models.o models.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o free.o free.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o help.o help.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o simu.o simu.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o eigen.o eigen.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o pars.o pars.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o alrt.o alrt.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o interface.o interface.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o cl.o cl.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o spr.o spr.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o draw.o draw.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o stats.o stats.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o io.o io.c io.c: In function ‘Sub_Trees’: io.c:511:25: warning: ‘subs’ may be used uninitialized [-Wmaybe-uninitialized] 511 | subs = (char **)mRealloc(subs,*degree+1,sizeof(char *)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c:479:10: note: ‘subs’ was declared here 479 | char **subs; | ^~~~ aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o make.o make.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o nexus.o nexus.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o init.o init.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o xml.o xml.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o sse.o sse.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o avx.o avx.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o tbe.o tbe.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ancestral.o ancestral.c aarch64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o mixt.o mixt.c aarch64-linux-gnu-gcc -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o io.o make.o nexus.o init.o xml.o sse.o avx.o tbe.o ancestral.o mixt.o -lm -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ mkdir -p /<>/debian/bin mv src/phyml /<>/debian/bin/phyml /usr/bin/make distclean make[2]: Entering directory '/<>' Making distclean in src make[3]: Entering directory '/<>/src' rm -f phyml rm -f *.o rm -f *.tab.c rm -f test . = "." || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f ./.deps/alrt.Po rm -f ./.deps/ancestral.Po rm -f ./.deps/avx.Po rm -f ./.deps/bionj.Po rm -f ./.deps/cl.Po rm -f ./.deps/date.Po rm -f ./.deps/draw.Po rm -f ./.deps/eigen.Po rm -f ./.deps/free.Po rm -f ./.deps/help.Po rm -f ./.deps/init.Po rm -f ./.deps/interface.Po rm -f ./.deps/io.Po rm -f ./.deps/lk.Po rm -f ./.deps/location.Po rm -f ./.deps/main.Po rm -f ./.deps/make.Po rm -f ./.deps/mcmc.Po rm -f ./.deps/mg.Po rm -f ./.deps/mixt.Po rm -f ./.deps/models.Po rm -f ./.deps/mpi_boot.Po rm -f ./.deps/nexus.Po rm -f ./.deps/optimiz.Po rm -f ./.deps/pars.Po rm -f ./.deps/phyrex.Po rm -f ./.deps/rates.Po rm -f ./.deps/rrw.Po rm -f ./.deps/rw.Po rm -f ./.deps/simu.Po rm -f ./.deps/slfv.Po rm -f ./.deps/spr.Po rm -f ./.deps/sse.Po rm -f ./.deps/stats.Po rm -f ./.deps/tbe.Po rm -f ./.deps/times.Po rm -f ./.deps/utilities.Po rm -f ./.deps/xml.Po rm -f Makefile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' rm -f test . = "." || rm -f rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f cscope.out cscope.in.out cscope.po.out cscope.files make[3]: Leaving directory '/<>' rm -f config.status config.cache config.log configure.lineno config.status.lineno rm -f Makefile make[2]: Leaving directory '/<>' dh_auto_configure -- --enable-phyml-mpi ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --enable-phyml-mpi checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to enable C11 features... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-gcc... none configure: "Do not use MSSE = because not available on arch aarch64-unknown-linux-gnu" checking for log in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20220408-4 :. mpicc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o main.o main.c gcc: error: unrecognized command-line option ‘-mbranch-protection=standard’ make[4]: *** [Makefile:1224: main.o] Error 1 make[4]: Leaving directory '/<>/src' make[3]: *** [Makefile:371: all-recursive] Error 1 make[3]: Leaving directory '/<>' make[2]: *** [Makefile:312: all] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" returned exit code 2 make[1]: *** [debian/rules:31: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:13: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-05-17T08:30:29Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ---------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 44 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 19 Job: phyml_3:3.3.20220408-4 Machine Architecture: amd64 Package: phyml Package-Time: 72 Source-Version: 3:3.3.20220408-4 Space: n/a Status: attempted Version: 3:3.3.20220408-4 -------------------------------------------------------------------------------- Finished at 2025-05-17T08:30:29Z Build needed 00:01:12, no disk space