sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | phyml 3:3.3.20220408-4 (riscv64) Wed, 26 Mar 2025 10:55:02 +0000 | +==============================================================================+ Package: phyml Version: 3:3.3.20220408-4 Source Version: 3:3.3.20220408-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: riscv64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-8a8e4f96-7208-4594-ac4c-22db206b5d5a' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-QtlCIY/resolver-BvBgKA' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [205 kB] Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main Sources T-2025-03-26-0806.32-F-2025-03-26-0205.47.pdiff [25.7 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-26-0806.32-F-2025-03-26-0205.47.pdiff [27.4 kB] Get:4 http://localhost:3142/debian unstable/main Sources T-2025-03-26-0806.32-F-2025-03-26-0205.47.pdiff [25.7 kB] Get:6 http://localhost:3142/debian unstable/main riscv64 Packages [9736 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-26-0806.32-F-2025-03-26-0205.47.pdiff [27.4 kB] Fetched 10.1 MB in 3s (3625 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libcap2 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 27.9 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 libcap2 amd64 1:2.75-4 [27.9 kB] Fetched 27.9 kB in 0s (0 B/s) (Reading database ... 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Processing triggers for libc-bin (2.41-6) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'phyml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/phyml.git Please use: git clone https://salsa.debian.org/med-team/phyml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1833 kB of source archives. Get:1 http://localhost:3142/debian unstable/main phyml 3:3.3.20220408-4 (dsc) [2256 B] Get:2 http://localhost:3142/debian unstable/main phyml 3:3.3.20220408-4 (tar) [1804 kB] Get:3 http://localhost:3142/debian unstable/main phyml 3:3.3.20220408-4 (diff) [27.0 kB] Fetched 1833 kB in 0s (4019 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/phyml-QtlCIY/phyml-3.3.20220408' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-QtlCIY' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), pkgconf, mpi-default-dev, chrpath, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 Filtered Build-Depends: debhelper-compat (= 13), pkgconf, mpi-default-dev, chrpath, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [755 B] Get:5 copy:/<>/apt_archive ./ Packages [800 B] Fetched 2164 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: adduser autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils chrpath cpp-14-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file flang-19:riscv64 g++-14-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-14-base:riscv64 gcc-14-cross-base gcc-14-riscv64-linux-gnu gcc-14-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base ibverbs-providers ibverbs-providers:riscv64 intltool-debian libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libbsd0:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcap2:riscv64 libcbor0.10 libclang-cpp19:riscv64 libcom-err2 libcrypt-dev:riscv64 libcrypt1:riscv64 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libedit2:riscv64 libelf1t64 libevent-2.1-7t64:riscv64 libevent-core-2.1-7t64 libevent-core-2.1-7t64:riscv64 libevent-dev:riscv64 libevent-extra-2.1-7t64:riscv64 libevent-openssl-2.1-7t64:riscv64 libevent-pthreads-2.1-7t64 libevent-pthreads-2.1-7t64:riscv64 libfabric1 libfabric1:riscv64 libfakeroot libffi8 libffi8:riscv64 libfido2-1 libfile-stripnondeterminism-perl libflang-19-dev:riscv64 libfuse3-4 libfuse3-4:riscv64 libgcc-14-dev:riscv64 libgcc-14-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgomp1:riscv64 libgomp1-riscv64-cross libgssapi-krb5-2 libhsa-runtime64-1 libhsakmt1 libhwloc-dev:riscv64 libhwloc-plugins libhwloc-plugins:riscv64 libhwloc15 libhwloc15:riscv64 libibmad5 libibmad5:riscv64 libibumad3 libibumad3:riscv64 libibverbs-dev:riscv64 libibverbs1 libibverbs1:riscv64 libicu76 libicu76:riscv64 libitm1:riscv64 libitm1-riscv64-cross libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libllvm19:riscv64 liblsan0:riscv64 liblsan0-riscv64-cross libltdl-dev:riscv64 libltdl7:riscv64 liblzma5:riscv64 libmagic-mgc libmagic1t64 libmd0:riscv64 libmunge2 libmunge2:riscv64 libnl-3-200 libnl-3-200:riscv64 libnl-3-dev:riscv64 libnl-route-3-200 libnl-route-3-200:riscv64 libnl-route-3-dev:riscv64 libnuma-dev:riscv64 libnuma1 libnuma1:riscv64 libopenmpi-dev:riscv64 libopenmpi40 libopenmpi40:riscv64 libpciaccess0 libpciaccess0:riscv64 libpipeline1 libpkgconf3 libpmix-dev:riscv64 libpmix2t64 libpmix2t64:riscv64 libpsm2-2 librdmacm1t64 librdmacm1t64:riscv64 libssl3t64:riscv64 libstdc++-14-dev:riscv64 libstdc++-14-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtinfo6:riscv64 libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libucx0 libucx0:riscv64 libudev1:riscv64 libunistring5 libx11-6 libx11-6:riscv64 libx11-data libxau6 libxau6:riscv64 libxcb1 libxcb1:riscv64 libxdmcp6 libxdmcp6:riscv64 libxext6 libxext6:riscv64 libxml2 libxml2:riscv64 libxnvctrl0 libxnvctrl0:riscv64 libz3-4 libz3-4:riscv64 libzstd1:riscv64 linux-libc-dev-riscv64-cross m4 man-db mpi-default-dev:riscv64 ocl-icd-libopencl1 ocl-icd-libopencl1:riscv64 openmpi-bin openmpi-common openssh-client pkgconf:riscv64 pkgconf-bin po-debconf sensible-utils zlib1g:riscv64 zlib1g-dev:riscv64 Suggested packages: liblocale-gettext-perl cron quota autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-riscv64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:riscv64 libc-l10n:riscv64 locales:riscv64 libnss-nis:riscv64 libnss-nisplus:riscv64 manpages-dev:riscv64 fuse3 fuse3:riscv64 krb5-doc krb5-user libhwloc-contrib-plugins libjs-jquery-ui-docs libtool-doc:riscv64 openmpi-doc:riscv64 pciutils pciutils:riscv64 libstdc++-14-doc:riscv64 libtool-doc gfortran | fortran95-compiler gcj-jdk libidn2-0:riscv64 m4-doc apparmor less www-browser opencl-icd opencl-icd:riscv64 gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:riscv64 libarchive-cpio-perl javascript-common krb5-locales libcoarrays-openmpi-dev:riscv64 libltdl-dev xauth libmail-sendmail-perl The following NEW packages will be installed: adduser autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils chrpath cpp-14-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file flang-19:riscv64 g++-14-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-14-base:riscv64 gcc-14-cross-base gcc-14-riscv64-linux-gnu gcc-14-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base ibverbs-providers ibverbs-providers:riscv64 intltool-debian libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libbsd0:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcap2:riscv64 libcbor0.10 libclang-cpp19:riscv64 libcom-err2 libcrypt-dev:riscv64 libcrypt1:riscv64 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libedit2:riscv64 libelf1t64 libevent-2.1-7t64:riscv64 libevent-core-2.1-7t64 libevent-core-2.1-7t64:riscv64 libevent-dev:riscv64 libevent-extra-2.1-7t64:riscv64 libevent-openssl-2.1-7t64:riscv64 libevent-pthreads-2.1-7t64 libevent-pthreads-2.1-7t64:riscv64 libfabric1 libfabric1:riscv64 libfakeroot libffi8 libffi8:riscv64 libfido2-1 libfile-stripnondeterminism-perl libflang-19-dev:riscv64 libfuse3-4 libfuse3-4:riscv64 libgcc-14-dev:riscv64 libgcc-14-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgomp1:riscv64 libgomp1-riscv64-cross libgssapi-krb5-2 libhsa-runtime64-1 libhsakmt1 libhwloc-dev:riscv64 libhwloc-plugins libhwloc-plugins:riscv64 libhwloc15 libhwloc15:riscv64 libibmad5 libibmad5:riscv64 libibumad3 libibumad3:riscv64 libibverbs-dev:riscv64 libibverbs1 libibverbs1:riscv64 libicu76 libicu76:riscv64 libitm1:riscv64 libitm1-riscv64-cross libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm17t64 libllvm19:riscv64 liblsan0:riscv64 liblsan0-riscv64-cross libltdl-dev:riscv64 libltdl7:riscv64 liblzma5:riscv64 libmagic-mgc libmagic1t64 libmd0:riscv64 libmunge2 libmunge2:riscv64 libnl-3-200 libnl-3-200:riscv64 libnl-3-dev:riscv64 libnl-route-3-200 libnl-route-3-200:riscv64 libnl-route-3-dev:riscv64 libnuma-dev:riscv64 libnuma1 libnuma1:riscv64 libopenmpi-dev:riscv64 libopenmpi40 libopenmpi40:riscv64 libpciaccess0 libpciaccess0:riscv64 libpipeline1 libpkgconf3 libpmix-dev:riscv64 libpmix2t64 libpmix2t64:riscv64 libpsm2-2 librdmacm1t64 librdmacm1t64:riscv64 libssl3t64:riscv64 libstdc++-14-dev:riscv64 libstdc++-14-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtinfo6:riscv64 libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libucx0 libucx0:riscv64 libudev1:riscv64 libunistring5 libx11-6 libx11-6:riscv64 libx11-data libxau6 libxau6:riscv64 libxcb1 libxcb1:riscv64 libxdmcp6 libxdmcp6:riscv64 libxext6 libxext6:riscv64 libxml2 libxml2:riscv64 libxnvctrl0 libxnvctrl0:riscv64 libz3-4 libz3-4:riscv64 libzstd1:riscv64 linux-libc-dev-riscv64-cross m4 man-db mpi-default-dev:riscv64 ocl-icd-libopencl1 ocl-icd-libopencl1:riscv64 openmpi-bin openmpi-common openssh-client pkgconf:riscv64 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:riscv64 sensible-utils zlib1g:riscv64 zlib1g-dev:riscv64 0 upgraded, 189 newly installed, 0 to remove and 0 not upgraded. Need to get 321 MB of archives. After this operation, 2080 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://localhost:3142/debian unstable/main amd64 adduser all 3.149 [187 kB] Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-3 [337 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-3 [109 kB] Get:6 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-3 [43.5 kB] Get:7 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:9 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get:10 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:12 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:20 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:22 http://localhost:3142/debian unstable/main amd64 openssh-client amd64 1:9.9p2-2 [968 kB] Get:23 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get:24 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:25 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:26 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:27 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get:28 http://localhost:3142/debian unstable/main amd64 binutils-riscv64-linux-gnu amd64 2.44-3 [1428 kB] Get:29 http://localhost:3142/debian unstable/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get:30 http://localhost:3142/debian unstable/main amd64 gcc-14-riscv64-linux-gnu-base amd64 14.2.0-19cross1 [49.6 kB] Get:31 http://localhost:3142/debian unstable/main amd64 cpp-14-riscv64-linux-gnu amd64 14.2.0-19cross1 [13.3 MB] Get:32 http://localhost:3142/debian unstable/main amd64 cpp-riscv64-linux-gnu amd64 4:14.2.0-1 [4848 B] Get:33 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libc6-riscv64-cross all 2.41-6cross2 [1169 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libgcc-s1-riscv64-cross all 14.2.0-19cross1 [56.8 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libgomp1-riscv64-cross all 14.2.0-19cross1 [128 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libitm1-riscv64-cross all 14.2.0-19cross1 [25.2 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libatomic1-riscv64-cross all 14.2.0-19cross1 [8316 B] Get:39 http://localhost:3142/debian unstable/main amd64 libasan8-riscv64-cross all 14.2.0-19cross1 [2354 kB] Get:40 http://localhost:3142/debian unstable/main amd64 liblsan0-riscv64-cross all 14.2.0-19cross1 [1076 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libtsan2-riscv64-cross all 14.2.0-19cross1 [2230 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libstdc++6-riscv64-cross all 14.2.0-19cross1 [660 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libubsan1-riscv64-cross all 14.2.0-19cross1 [978 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-riscv64-cross all 14.2.0-19cross1 [5178 kB] Get:45 http://localhost:3142/debian unstable/main amd64 gcc-14-riscv64-linux-gnu amd64 14.2.0-19cross1 [25.7 MB] Get:46 http://localhost:3142/debian unstable/main amd64 gcc-riscv64-linux-gnu amd64 4:14.2.0-1 [1444 B] Get:47 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-riscv64-cross all 6.12.17-1cross2 [2339 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libc6-dev-riscv64-cross all 2.41-6cross2 [3123 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-riscv64-cross all 14.2.0-19cross1 [4940 kB] Get:50 http://localhost:3142/debian unstable/main amd64 g++-14-riscv64-linux-gnu amd64 14.2.0-19cross1 [14.3 MB] Get:51 http://localhost:3142/debian unstable/main amd64 g++-riscv64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:52 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-riscv64 all 12.12 [3544 B] Get:53 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:55 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:58 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:59 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:60 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.3+b1 [699 kB] Get:64 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get:65 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:66 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:67 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.1-1 [29.6 kB] Get:69 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.1-1 [76.0 kB] Get:70 http://localhost:3142/debian unstable/main riscv64 gcc-14-base riscv64 14.2.0-19 [49.4 kB] Get:71 http://localhost:3142/debian unstable/main riscv64 libgcc-s1 riscv64 14.2.0-19 [56.8 kB] Get:72 http://localhost:3142/debian unstable/main riscv64 libc6 riscv64 2.41-6 [2465 kB] Get:73 http://localhost:3142/debian unstable/main riscv64 libatomic1 riscv64 14.2.0-19 [8672 B] Get:74 http://localhost:3142/debian unstable/main riscv64 libmd0 riscv64 1.1.0-2+b1 [37.6 kB] Get:75 http://localhost:3142/debian unstable/main riscv64 libbsd0 riscv64 0.12.2-2 [132 kB] Get:76 http://localhost:3142/debian unstable/main riscv64 libtinfo6 riscv64 6.5+20250216-2 [347 kB] Get:77 http://localhost:3142/debian unstable/main riscv64 libedit2 riscv64 3.1-20250104-1 [92.5 kB] Get:78 http://localhost:3142/debian unstable/main riscv64 libffi8 riscv64 3.4.7-1 [21.6 kB] Get:79 http://localhost:3142/debian unstable/main riscv64 libstdc++6 riscv64 14.2.0-19 [707 kB] Get:80 http://localhost:3142/debian unstable/main riscv64 libicu76 riscv64 76.1-3 [9698 kB] Get:81 http://localhost:3142/debian unstable/main riscv64 liblzma5 riscv64 5.6.4-1 [285 kB] Get:82 http://localhost:3142/debian unstable/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Get:83 http://localhost:3142/debian unstable/main riscv64 libxml2 riscv64 2.12.7+dfsg+really2.9.14-0.3+b1 [709 kB] Get:84 http://localhost:3142/debian unstable/main riscv64 libz3-4 riscv64 4.13.3-1 [8514 kB] Get:85 http://localhost:3142/debian unstable/main riscv64 libzstd1 riscv64 1.5.7+dfsg-1 [360 kB] Get:86 http://localhost:3142/debian unstable/main riscv64 libllvm19 riscv64 1:19.1.7-3 [24.9 MB] Get:87 http://localhost:3142/debian unstable/main riscv64 libclang-cpp19 riscv64 1:19.1.7-3 [12.7 MB] Get:88 http://localhost:3142/debian unstable/main riscv64 libgomp1 riscv64 14.2.0-19 [130 kB] Get:89 http://localhost:3142/debian unstable/main riscv64 libitm1 riscv64 14.2.0-19 [25.8 kB] Get:90 http://localhost:3142/debian unstable/main riscv64 libasan8 riscv64 14.2.0-19 [2365 kB] Get:91 http://localhost:3142/debian unstable/main riscv64 liblsan0 riscv64 14.2.0-19 [1078 kB] Get:92 http://localhost:3142/debian unstable/main riscv64 libtsan2 riscv64 14.2.0-19 [2241 kB] Get:93 http://localhost:3142/debian unstable/main riscv64 libubsan1 riscv64 14.2.0-19 [979 kB] Get:94 http://localhost:3142/debian unstable/main riscv64 libgcc-14-dev riscv64 14.2.0-19 [5190 kB] Get:95 http://localhost:3142/debian unstable/main riscv64 libcrypt1 riscv64 1:4.4.38-1 [106 kB] Get:96 http://localhost:3142/debian unstable/main riscv64 libcrypt-dev riscv64 1:4.4.38-1 [221 kB] Get:97 http://localhost:3142/debian unstable/main riscv64 libc6-dev riscv64 2.41-6 [3127 kB] Get:98 http://localhost:3142/debian unstable/main riscv64 libstdc++-14-dev riscv64 14.2.0-19 [5276 kB] Get:99 http://localhost:3142/debian unstable/main riscv64 libflang-19-dev riscv64 1:19.1.7-3 [26.9 MB] Get:100 http://localhost:3142/debian unstable/main riscv64 flang-19 riscv64 1:19.1.7-3 [24.6 MB] Get:101 http://localhost:3142/debian unstable/main riscv64 libnl-3-200 riscv64 3.7.0-2 [60.0 kB] Get:102 http://localhost:3142/debian unstable/main riscv64 libnl-route-3-200 riscv64 3.7.0-2 [183 kB] Get:103 http://localhost:3142/debian unstable/main riscv64 libibverbs1 riscv64 56.0-3 [62.6 kB] Get:104 http://localhost:3142/debian unstable/main riscv64 ibverbs-providers riscv64 56.0-3 [389 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-2 [59.4 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-2 [182 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libibverbs1 amd64 56.0-3 [62.4 kB] Get:108 http://localhost:3142/debian unstable/main amd64 ibverbs-providers amd64 56.0-3 [357 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-21+b1 [23.6 MB] Get:112 http://localhost:3142/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get:113 http://localhost:3142/debian unstable/main amd64 libdrm-common all 2.4.124-1 [8180 B] Get:114 http://localhost:3142/debian unstable/main amd64 libdrm2 amd64 2.4.124-1 [38.9 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.124-1 [22.4 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-5+b1 [8882 kB] Get:120 http://localhost:3142/debian unstable/main riscv64 libcap2 riscv64 1:2.75-4 [28.4 kB] Get:121 http://localhost:3142/debian unstable/main riscv64 libevent-2.1-7t64 riscv64 2.1.12-stable-10+b1 [182 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get:123 http://localhost:3142/debian unstable/main riscv64 libevent-core-2.1-7t64 riscv64 2.1.12-stable-10+b1 [132 kB] Get:124 http://localhost:3142/debian unstable/main riscv64 libevent-extra-2.1-7t64 riscv64 2.1.12-stable-10+b1 [108 kB] Get:125 http://localhost:3142/debian unstable/main riscv64 libevent-pthreads-2.1-7t64 riscv64 2.1.12-stable-10+b1 [54.1 kB] Get:126 http://localhost:3142/debian unstable/main riscv64 libssl3t64 riscv64 3.4.1-1 [2098 kB] Get:127 http://localhost:3142/debian unstable/main riscv64 libevent-openssl-2.1-7t64 riscv64 2.1.12-stable-10+b1 [60.6 kB] Get:128 http://localhost:3142/debian unstable/main riscv64 libevent-dev riscv64 2.1.12-stable-10+b1 [523 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:131 http://localhost:3142/debian unstable/main amd64 librdmacm1t64 amd64 56.0-3 [70.1 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libfabric1 amd64 2.0.0-4 [700 kB] Get:133 http://localhost:3142/debian unstable/main riscv64 librdmacm1t64 riscv64 56.0-3 [74.1 kB] Get:134 http://localhost:3142/debian unstable/main riscv64 libfabric1 riscv64 2.0.0-4 [595 kB] Get:135 http://localhost:3142/debian unstable/main riscv64 libfuse3-4 riscv64 3.17.1-1 [96.6 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libfuse3-4 amd64 3.17.1-1 [97.7 kB] Get:137 http://localhost:3142/debian unstable/main riscv64 libudev1 riscv64 257.4-3 [151 kB] Get:138 http://localhost:3142/debian unstable/main riscv64 libhwloc15 riscv64 2.12.0-1 [158 kB] Get:139 http://localhost:3142/debian unstable/main riscv64 libnuma1 riscv64 2.0.18-1+b1 [23.4 kB] Get:140 http://localhost:3142/debian unstable/main riscv64 libnuma-dev riscv64 2.0.18-1+b1 [66.1 kB] Get:141 http://localhost:3142/debian unstable/main riscv64 libltdl7 riscv64 2.5.4-4 [415 kB] Get:142 http://localhost:3142/debian unstable/main riscv64 libltdl-dev riscv64 2.5.4-4 [188 kB] Get:143 http://localhost:3142/debian unstable/main riscv64 libhwloc-dev riscv64 2.12.0-1 [516 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get:152 http://localhost:3142/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libhwloc15 amd64 2.12.0-1 [164 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libhwloc-plugins amd64 2.12.0-1 [18.1 kB] Get:155 http://localhost:3142/debian unstable/main riscv64 libpciaccess0 riscv64 0.17-3+b3 [51.6 kB] Get:156 http://localhost:3142/debian unstable/main riscv64 libxau6 riscv64 1:1.0.11-1 [20.5 kB] Get:157 http://localhost:3142/debian unstable/main riscv64 libxdmcp6 riscv64 1:1.1.5-1 [28.0 kB] Get:158 http://localhost:3142/debian unstable/main riscv64 libxcb1 riscv64 1.17.0-2+b1 [145 kB] Get:159 http://localhost:3142/debian unstable/main riscv64 libx11-6 riscv64 2:1.8.12-1 [817 kB] Get:160 http://localhost:3142/debian unstable/main riscv64 libxext6 riscv64 2:1.3.4-1+b3 [51.7 kB] Get:161 http://localhost:3142/debian unstable/main riscv64 libxnvctrl0 riscv64 535.171.04-1+b2 [14.5 kB] Get:162 http://localhost:3142/debian unstable/main riscv64 ocl-icd-libopencl1 riscv64 2.3.2-1+b2 [39.1 kB] Get:163 http://localhost:3142/debian unstable/main riscv64 libhwloc-plugins riscv64 2.12.0-1 [17.5 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libibumad3 amd64 56.0-3 [29.9 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libibmad5 amd64 56.0-3 [44.4 kB] Get:166 http://localhost:3142/debian unstable/main riscv64 libibumad3 riscv64 56.0-3 [29.5 kB] Get:167 http://localhost:3142/debian unstable/main riscv64 libibmad5 riscv64 56.0-3 [44.3 kB] Get:168 http://localhost:3142/debian unstable/main riscv64 libnl-3-dev riscv64 3.7.0-2 [171 kB] Get:169 http://localhost:3142/debian unstable/main riscv64 libnl-route-3-dev riscv64 3.7.0-2 [503 kB] Get:170 http://localhost:3142/debian unstable/main riscv64 libibverbs-dev riscv64 56.0-3 [1577 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:172 http://localhost:3142/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:173 http://localhost:3142/debian unstable/main riscv64 libmunge2 riscv64 0.5.16-1 [19.9 kB] Get:174 http://localhost:3142/debian unstable/main amd64 libmunge2 amd64 0.5.16-1 [19.7 kB] Get:175 http://localhost:3142/debian unstable/main riscv64 libpmix2t64 riscv64 5.0.7-1 [656 kB] Get:176 http://localhost:3142/debian unstable/main riscv64 libucx0 riscv64 1.18.1+ds-2+b1 [1168 kB] Get:177 http://localhost:3142/debian unstable/main riscv64 libopenmpi40 riscv64 5.0.7-1 [2289 kB] Get:178 http://localhost:3142/debian unstable/main amd64 openmpi-common all 5.0.7-1 [97.2 kB] Get:179 http://localhost:3142/debian unstable/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB] Get:180 http://localhost:3142/debian unstable/main riscv64 libpmix-dev riscv64 5.0.7-1 [5515 kB] Get:181 http://localhost:3142/debian unstable/main amd64 libpmix2t64 amd64 5.0.7-1 [660 kB] Get:182 http://localhost:3142/debian unstable/main amd64 libucx0 amd64 1.18.1+ds-2+b1 [1196 kB] Get:183 http://localhost:3142/debian unstable/main amd64 libopenmpi40 amd64 5.0.7-1 [2365 kB] Get:184 http://localhost:3142/debian unstable/main amd64 openmpi-bin amd64 5.0.7-1 [189 kB] Get:185 http://localhost:3142/debian unstable/main riscv64 libopenmpi-dev riscv64 5.0.7-1 [1089 kB] Get:186 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:187 http://localhost:3142/debian unstable/main riscv64 mpi-default-dev riscv64 1.18 [3376 B] Get:188 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:189 http://localhost:3142/debian unstable/main riscv64 pkgconf riscv64 1.8.1-4 [26.1 kB] Preconfiguring packages ... Fetched 321 MB in 2s (206 MB/s) Selecting previously unselected package adduser. (Reading database ... 12837 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.149_all.deb ... Unpacking adduser (3.149) ... Setting up adduser (3.149) ... Selecting previously unselected package sensible-utils. (Reading database ... 12914 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-3_amd64.deb ... Unpacking libmagic-mgc (1:5.46-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-3) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-3_amd64.deb ... Unpacking file (1:5.46-3) ... 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Preparing to unpack .../010-libedit2_3.1-20250104-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20250104-1) ... Selecting previously unselected package libcbor0.10:amd64. Preparing to unpack .../011-libcbor0.10_0.10.2-2_amd64.deb ... Unpacking libcbor0.10:amd64 (0.10.2-2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../012-libfido2-1_1.15.0-1+b1_amd64.deb ... Unpacking libfido2-1:amd64 (1.15.0-1+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../013-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../014-libcom-err2_1.47.2-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../015-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../016-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../017-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../018-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package openssh-client. Preparing to unpack .../019-openssh-client_1%3a9.9p2-2_amd64.deb ... Unpacking openssh-client (1:9.9p2-2) ... Selecting previously unselected package m4. Preparing to unpack .../020-m4_1.4.19-7_amd64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../021-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. 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Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libpciaccess0:amd64 (0.17-3+b3) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.40.4-5) ... Setting up libmagic-mgc (1:5.46-3) ... Setting up gcc-14-base:riscv64 (14.2.0-19) ... Setting up libcbor0.10:amd64 (0.10.2-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libmagic1t64:amd64 (1:5.46-3) ... Setting up libibumad3:amd64 (56.0-3) ... Setting up gettext-base (0.23.1-1) ... Setting up binutils-riscv64-linux-gnu (2.44-3) ... Setting up m4 (1.4.19-7) ... Setting up gcc-14-cross-base (14.2.0-19cross1) ... Setting up libibmad5:amd64 (56.0-3) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up file (1:5.46-3) ... Setting up libfakeroot:amd64 (1.37.1.1-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up fakeroot (1.37.1.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20240727.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libmunge2:amd64 (0.5.16-1) ... Setting up gcc-14-riscv64-linux-gnu-base:amd64 (14.2.0-19cross1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libhwloc15:amd64 (2.12.0-1) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up autoconf (2.72-3) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up linux-libc-dev-riscv64-cross (6.12.17-1cross2) ... Setting up libnl-3-200:amd64 (3.7.0-2) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.7-1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libc6-riscv64-cross (2.41-6cross2) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libgomp1-riscv64-cross (14.2.0-19cross1) ... Setting up libicu76:amd64 (76.1-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfuse3-4:amd64 (3.17.1-1) ... Setting up libfido2-1:amd64 (1.15.0-1+b1) ... Setting up libatomic1-riscv64-cross (14.2.0-19cross1) ... Setting up libdrm-common (2.4.124-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up chrpath (0.18-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libitm1-riscv64-cross (14.2.0-19cross1) ... Setting up cpp-14-riscv64-linux-gnu (14.2.0-19cross1) ... Setting up pkgconf:riscv64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:amd64 (3.7.0-2) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libllvm17t64:amd64 (1:17.0.6-21+b1) ... Setting up libgcc-s1-riscv64-cross (14.2.0-19cross1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libdrm2:amd64 (2.4.124-1) ... Setting up groff-base (1.23.0-7) ... Setting up libc6-dev-riscv64-cross (2.41-6cross2) ... Setting up libasan8-riscv64-cross (14.2.0-19cross1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up cpp-riscv64-linux-gnu (4:14.2.0-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.124-1) ... Setting up libstdc++6-riscv64-cross (14.2.0-19cross1) ... Setting up libibverbs1:amd64 (56.0-3) ... Setting up ibverbs-providers:amd64 (56.0-3) ... Setting up libubsan1-riscv64-cross (14.2.0-19cross1) ... Setting up openssh-client (1:9.9p2-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up liblsan0-riscv64-cross (14.2.0-19cross1) ... Setting up libtsan2-riscv64-cross (14.2.0-19cross1) ... Setting up libhwloc-plugins:amd64 (2.12.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpmix2t64:amd64 (5.0.7-1) ... Setting up librdmacm1t64:amd64 (56.0-3) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up libfabric1:amd64 (2.0.0-4) ... Setting up libgcc-14-dev-riscv64-cross (14.2.0-19cross1) ... Setting up libstdc++-14-dev-riscv64-cross (14.2.0-19cross1) ... Setting up debhelper (13.24.1) ... Setting up gcc-14-riscv64-linux-gnu (14.2.0-19cross1) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up g++-14-riscv64-linux-gnu (14.2.0-19cross1) ... Setting up gcc-riscv64-linux-gnu (4:14.2.0-1) ... Setting up g++-riscv64-linux-gnu (4:14.2.0-1) ... Setting up libamdhip64-5 (5.7.1-5+b1) ... Setting up libucx0:amd64 (1.18.1+ds-2+b1) ... Setting up crossbuild-essential-riscv64 (12.12) ... Setting up libopenmpi40:amd64 (5.0.7-1) ... Setting up openmpi-bin (5.0.7-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libgcc-s1:riscv64 (14.2.0-19) ... Setting up libc6:riscv64 (2.41-6) ... Setting up libffi8:riscv64 (3.4.7-1) ... Setting up libnuma1:riscv64 (2.0.18-1+b1) ... Setting up libmd0:riscv64 (1.1.0-2+b1) ... Setting up ocl-icd-libopencl1:riscv64 (2.3.2-1+b2) ... Setting up libasan8:riscv64 (14.2.0-19) ... Setting up libnl-3-200:riscv64 (3.7.0-2) ... Setting up libevent-core-2.1-7t64:riscv64 (2.1.12-stable-10+b1) ... Setting up libtsan2:riscv64 (14.2.0-19) ... Setting up libfuse3-4:riscv64 (3.17.1-1) ... Setting up libbsd0:riscv64 (0.12.2-2) ... Setting up libstdc++6:riscv64 (14.2.0-19) ... Setting up liblsan0:riscv64 (14.2.0-19) ... Setting up libitm1:riscv64 (14.2.0-19) ... Setting up libtinfo6:riscv64 (6.5+20250216-2) ... Setting up libzstd1:riscv64 (1.5.7+dfsg-1) ... Setting up libxau6:riscv64 (1:1.0.11-1) ... Setting up libxdmcp6:riscv64 (1:1.1.5-1) ... Setting up libxcb1:riscv64 (1.17.0-2+b1) ... Setting up liblzma5:riscv64 (5.6.4-1) ... Setting up libevent-pthreads-2.1-7t64:riscv64 (2.1.12-stable-10+b1) ... Setting up libedit2:riscv64 (3.1-20250104-1) ... Setting up libibumad3:riscv64 (56.0-3) ... Setting up libevent-2.1-7t64:riscv64 (2.1.12-stable-10+b1) ... Setting up zlib1g:riscv64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:riscv64 (1:4.4.38-1) ... Setting up libibmad5:riscv64 (56.0-3) ... Setting up libgomp1:riscv64 (14.2.0-19) ... Setting up libcap2:riscv64 (1:2.75-4) ... Setting up libnl-route-3-200:riscv64 (3.7.0-2) ... Setting up libmunge2:riscv64 (0.5.16-1) ... Setting up libatomic1:riscv64 (14.2.0-19) ... Setting up libltdl7:riscv64 (2.5.4-4) ... Setting up libevent-extra-2.1-7t64:riscv64 (2.1.12-stable-10+b1) ... Setting up libudev1:riscv64 (257.4-3) ... Setting up libubsan1:riscv64 (14.2.0-19) ... Setting up libnl-3-dev:riscv64 (3.7.0-2) ... Setting up libcrypt-dev:riscv64 (1:4.4.38-1) ... Setting up libc6-dev:riscv64 (2.41-6) ... Setting up libx11-6:riscv64 (2:1.8.12-1) ... Setting up libicu76:riscv64 (76.1-3) ... Setting up libgcc-14-dev:riscv64 (14.2.0-19) ... Setting up libstdc++-14-dev:riscv64 (14.2.0-19) ... Setting up libxml2:riscv64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up libpciaccess0:riscv64 (0.17-3+b3) ... Setting up libibverbs1:riscv64 (56.0-3) ... Setting up ibverbs-providers:riscv64 (56.0-3) ... Setting up libssl3t64:riscv64 (3.4.1-1) ... Setting up libevent-openssl-2.1-7t64:riscv64 (2.1.12-stable-10+b1) ... Setting up libflang-19-dev:riscv64 (1:19.1.7-3) ... Setting up libxext6:riscv64 (2:1.3.4-1+b3) ... Setting up libnuma-dev:riscv64 (2.0.18-1+b1) ... Setting up libxnvctrl0:riscv64 (535.171.04-1+b2) ... Setting up libnl-route-3-dev:riscv64 (3.7.0-2) ... Setting up libltdl-dev:riscv64 (2.5.4-4) ... Setting up libz3-4:riscv64 (4.13.3-1) ... Setting up libevent-dev:riscv64 (2.1.12-stable-10+b1) ... Setting up libhwloc15:riscv64 (2.12.0-1) ... Setting up zlib1g-dev:riscv64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up librdmacm1t64:riscv64 (56.0-3) ... Setting up libhwloc-dev:riscv64 (2.12.0-1) ... Setting up libfabric1:riscv64 (2.0.0-4) ... Setting up libllvm19:riscv64 (1:19.1.7-3) ... Setting up libucx0:riscv64 (1.18.1+ds-2+b1) ... Setting up libibverbs-dev:riscv64 (56.0-3) ... Setting up libhwloc-plugins:riscv64 (2.12.0-1) ... Setting up libpmix2t64:riscv64 (5.0.7-1) ... Setting up libpmix-dev:riscv64 (5.0.7-1) ... Setting up libclang-cpp19:riscv64 (1:19.1.7-3) ... Setting up flang-19:riscv64 (1:19.1.7-3) ... Setting up libopenmpi40:riscv64 (5.0.7-1) ... Setting up libopenmpi-dev:riscv64 (5.0.7-1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/openmpi/include to provide /usr/include/riscv64-linux-gnu/mpi (mpi-riscv64-linux-gnu) in auto mode Setting up mpi-default-dev:riscv64 (1.18) ... Setting up sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-6 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-riscv64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-riscv64-cross_14.2.0-19cross1 linux-libc-dev_6.12.20-1 Package versions: adduser_3.149 apt_2.9.34 apt-utils_2.9.34 autoconf_2.72-3 automake_1:1.17-4 autopoint_0.23.1-1 autotools-dev_20240727.1 base-files_13.7 base-passwd_3.6.7 bash_5.2.37-1.1+b1 binutils_2.44-3 binutils-common_2.44-3 binutils-riscv64-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 chrpath_0.18-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-riscv64-linux-gnu_14.2.0-19cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-riscv64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-riscv64_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-3 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b1 fakeroot_1.37.1.1-1 file_1:5.46-3 findutils_4.10.0-3 flang-19_1:19.1.7-3 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-riscv64-linux-gnu_14.2.0-19cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-riscv64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-riscv64-linux-gnu_14.2.0-19cross1 gcc-14-riscv64-linux-gnu-base_14.2.0-19cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-riscv64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 ibverbs-providers_56.0-3 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b2 libamdhip64-5_5.7.1-5+b1 libapt-pkg7.0_2.9.34 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-riscv64-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-riscv64-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.40.4-5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-6 libc-dev-bin_2.41-6 libc6_2.41-6 libc6-dev_2.41-6 libc6-dev-riscv64-cross_2.41-6cross2 libc6-riscv64-cross_2.41-6cross2 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-4 libcbor0.10_0.10.2-2 libcc1-0_14.2.0-19 libclang-cpp19_1:19.1.7-3 libcom-err2_1.47.2-1+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdpkg-perl_1.22.18 libdrm-amdgpu1_2.4.124-1 libdrm-common_2.4.124-1 libdrm2_2.4.124-1 libedit2_3.1-20250104-1 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libevent-core-2.1-7t64_2.1.12-stable-10+b1 libevent-dev_2.1.12-stable-10+b1 libevent-extra-2.1-7t64_2.1.12-stable-10+b1 libevent-openssl-2.1-7t64_2.1.12-stable-10+b1 libevent-pthreads-2.1-7t64_2.1.12-stable-10+b1 libfabric1_2.0.0-4 libfakeroot_1.37.1.1-1 libffi8_3.4.7-1 libfido2-1_1.15.0-1+b1 libfile-stripnondeterminism-perl_1.14.1-2 libflang-19-dev_1:19.1.7-3 libfuse3-4_3.17.1-1 libgcc-14-dev_14.2.0-19 libgcc-14-dev-riscv64-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-riscv64-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgomp1_14.2.0-19 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libuuid1_2.40.4-5 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libxau6_1:1.0.11-1 libxcb1_1.17.0-2+b1 libxdmcp6_1:1.1.5-1 libxext6_2:1.3.4-1+b3 libxml2_2.12.7+dfsg+really2.9.14-0.3+b1 libxnvctrl0_535.171.04-1+b2 libxxhash0_0.8.3-2 libz3-4_4.13.3-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.20-1 linux-libc-dev-riscv64-cross_6.12.17-1cross2 login_1:4.16.0-2+really2.40.4-5 login.defs_1:4.17.3-2 m4_1.4.19-7 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 mount_2.40.4-5 mpi-default-dev_1.18 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 ocl-icd-libopencl1_2.3.2-1+b2 openmpi-bin_5.0.7-1 openmpi-common_5.0.7-1 openssh-client_1:9.9p2-2 openssl-provider-legacy_3.4.1-1 passwd_1:4.17.3-2 patch_2.7.6-7 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sqv_1.2.1-6+b1 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-1 util-linux_2.40.4-5 xz-utils_5.6.4-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: phyml Binary: phyml Architecture: any Version: 3:3.3.20220408-4 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Kevin Murray , Étienne Mollier Homepage: http://www.atgc-montpellier.fr/phyml Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/phyml Vcs-Git: https://salsa.debian.org/med-team/phyml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), pkgconf, mpi-default-dev, chrpath Package-List: phyml deb science optional arch=any Checksums-Sha1: 1dd5067ba9094eb54ff9f9c2c39c1c35ee750944 1803950 phyml_3.3.20220408.orig.tar.gz 4ca11e948f0e7e8585f0daad5f709e2be3170331 27020 phyml_3.3.20220408-4.debian.tar.xz Checksums-Sha256: 9cef375c0186e8a8d4db72ac02148707624c97174ffac244167a138ceb9f65bd 1803950 phyml_3.3.20220408.orig.tar.gz a76294e8f8b118a105217755ea67701870ffed751c8940b54168f3b578ff1fad 27020 phyml_3.3.20220408-4.debian.tar.xz Files: b35e641af77d7f058cf1ddc73be5e0b7 1803950 phyml_3.3.20220408.orig.tar.gz 48050b4235d2e54572c398938a25a5e4 27020 phyml_3.3.20220408-4.debian.tar.xz Dgit: c34b7a51c3c1b3dedfd37ab64fe7ee062fb94633 debian archive/debian/3%3.3.20220408-4 https://git.dgit.debian.org/phyml -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcvtLQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdobew/6Anprva8MJNpL/ScGgyqU5HGqZpSG WAeG7rfbMwAAWbhsJfec1I9QgB+Usrrio+t8Pf8Hfp2khAWeAN7UBPjkGr8CAlm2 7LKnMdqhFMdSiQrEHsG51Ad1aVi5UV8kEzApUjYjgLTaLn/DqHFqn3r80Q5/HIYD MLL/LFqN/IlyYfhpe8TZ1z3u/bcvZIStdKkUcVFHERSZfn5oyKwNTqdIgryqoWlI 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fix_declaration_of_temp.patch dpkg-source: info: applying fix_wrong_initialisation_of_array.patch dpkg-source: info: applying no-march-native.patch dpkg-source: info: applying apply-cflags.patch dpkg-source: info: applying filter-sse3-intrinsics.patch dpkg-source: info: applying apply-ldflags.patch dpkg-source: info: applying typos.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.riscv64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.nX5pRKRh4Y/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-8a8e4f96-7208-4594-ac4c-22db206b5d5a SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ariscv64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package phyml dpkg-buildpackage: info: source version 3:3.3.20220408-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type riscv64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # save pdf from cleaning mv doc/phyml-manual.pdf . dh_auto_clean mv phyml-manual.pdf doc # remove temporary bin dir for phyml (see above hack) rm -rf debian/bin rm -rf doc/Makefile make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' dh_autoreconf --as-needed configure.ac:31: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:31: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:31: the top level configure.ac:52: warning: The macro 'AC_FUNC_SETVBUF_REVERSED' is obsolete. Remove it and all references to SETVBUF_REVERSED. ./lib/autoconf/functions.m4:1785: AC_FUNC_SETVBUF_REVERSED is expanded from... configure.ac:52: the top level configure.ac:14: installing './compile' configure.ac:12: installing './config.guess' configure.ac:12: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # According to README you need different configure options to get different executables # Here we hack in a full build process for phyml executable # The hack includes saving the documentation from beeing cleaned up mv doc/phyml-manual.pdf . dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=riscv64-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for riscv64-linux-gnu-strip... riscv64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for riscv64-linux-gnu-gcc... riscv64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether riscv64-linux-gnu-gcc accepts -g... yes checking for riscv64-linux-gnu-gcc option to enable C11 features... none needed checking whether riscv64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of riscv64-linux-gnu-gcc... none configure: "Do not use MSSE = because not available on arch riscv64-unknown-linux-gnu" checking for log in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml]. Version 3.3.3:3.3.20220408-4 :. riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utilities.o utilities.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o optimiz.o optimiz.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lk.o lk.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bionj.o bionj.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o models.o models.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o free.o free.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o help.o help.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o simu.o simu.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eigen.o eigen.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pars.o pars.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alrt.o alrt.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o interface.o interface.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cl.o cl.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o spr.o spr.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o draw.o draw.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stats.o stats.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o io.o io.c io.c: In function ‘Sub_Trees’: io.c:511:25: warning: ‘subs’ may be used uninitialized [-Wmaybe-uninitialized] 511 | subs = (char **)mRealloc(subs,*degree+1,sizeof(char *)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c:479:10: note: ‘subs’ was declared here 479 | char **subs; | ^~~~ riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o make.o make.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o nexus.o nexus.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o init.o init.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o xml.o xml.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sse.o sse.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o avx.o avx.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tbe.o tbe.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ancestral.o ancestral.c riscv64-linux-gnu-gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mixt.o mixt.c riscv64-linux-gnu-gcc -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o io.o make.o nexus.o init.o xml.o sse.o avx.o tbe.o ancestral.o mixt.o -lm -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ mkdir -p /<>/debian/bin mv src/phyml /<>/debian/bin/phyml /usr/bin/make distclean make[2]: Entering directory '/<>' Making distclean in src make[3]: Entering directory '/<>/src' rm -f phyml rm -f *.o rm -f *.tab.c rm -f test . = "." || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f ./.deps/alrt.Po rm -f ./.deps/ancestral.Po rm -f ./.deps/avx.Po rm -f ./.deps/bionj.Po rm -f ./.deps/cl.Po rm -f ./.deps/date.Po rm -f ./.deps/draw.Po rm -f ./.deps/eigen.Po rm -f ./.deps/free.Po rm -f ./.deps/help.Po rm -f ./.deps/init.Po rm -f ./.deps/interface.Po rm -f ./.deps/io.Po rm -f ./.deps/lk.Po rm -f ./.deps/location.Po rm -f ./.deps/main.Po rm -f ./.deps/make.Po rm -f ./.deps/mcmc.Po rm -f ./.deps/mg.Po rm -f ./.deps/mixt.Po rm -f ./.deps/models.Po rm -f ./.deps/mpi_boot.Po rm -f ./.deps/nexus.Po rm -f ./.deps/optimiz.Po rm -f ./.deps/pars.Po rm -f ./.deps/phyrex.Po rm -f ./.deps/rates.Po rm -f ./.deps/rrw.Po rm -f ./.deps/rw.Po rm -f ./.deps/simu.Po rm -f ./.deps/slfv.Po rm -f ./.deps/spr.Po rm -f ./.deps/sse.Po rm -f ./.deps/stats.Po rm -f ./.deps/tbe.Po rm -f ./.deps/times.Po rm -f ./.deps/utilities.Po rm -f ./.deps/xml.Po rm -f Makefile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' rm -f test . = "." || rm -f rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f cscope.out cscope.in.out cscope.po.out cscope.files make[3]: Leaving directory '/<>' rm -f config.status config.cache config.log configure.lineno config.status.lineno rm -f Makefile make[2]: Leaving directory '/<>' dh_auto_configure -- --enable-phyml-mpi ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=riscv64-linux-gnu --enable-phyml-mpi checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for riscv64-linux-gnu-strip... riscv64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for riscv64-linux-gnu-gcc... riscv64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether riscv64-linux-gnu-gcc accepts -g... yes checking for riscv64-linux-gnu-gcc option to enable C11 features... none needed checking whether riscv64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of riscv64-linux-gnu-gcc... none configure: "Do not use MSSE = because not available on arch riscv64-unknown-linux-gnu" checking for log in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20220408-4 :. mpicc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.c In file included from utilities.h:2545, from spr.h:12, from main.c:13: mpi_boot.h:18:10: fatal error: mpi.h: No such file or directory 18 | #include "mpi.h" | ^~~~~~~ compilation terminated. make[4]: *** [Makefile:1224: main.o] Error 1 make[4]: Leaving directory '/<>/src' make[3]: *** [Makefile:371: all-recursive] Error 1 make[3]: Leaving directory '/<>' make[2]: *** [Makefile:312: all] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "LDFLAGS=-Wl,-z,relro -Wl,-z,now" returned exit code 2 make[1]: *** [debian/rules:31: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:13: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-03-26T10:56:16Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ---------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 43 Distribution: unstable Fail-Stage: build Foreign Architectures: riscv64 Host Architecture: riscv64 Install-Time: 20 Job: phyml_3:3.3.20220408-4 Machine Architecture: amd64 Package: phyml Package-Time: 74 Source-Version: 3:3.3.20220408-4 Space: n/a Status: attempted Version: 3:3.3.20220408-4 -------------------------------------------------------------------------------- Finished at 2025-03-26T10:56:16Z Build needed 00:01:14, no disk space