sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | phyx 1.3.2+ds-1 (armhf) Wed, 18 Jun 2025 20:23:15 +0000 | +==============================================================================+ Package: phyx Version: 1.3.2+ds-1 Source Version: 1.3.2+ds-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-ecdc892f-b26d-421c-bfc5-27f68afd66ee' with '<>' I: NOTICE: Log filtering will replace 'build/phyx-ayDIKk/resolver-NTdl8T' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [208 kB] Get:2 http://localhost:3142/debian unstable/non-free Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/non-free Sources T-2025-06-18-1404.12-F-2025-06-18-1404.12.pdiff [1593 B] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-06-18-1404.12-F-2025-06-18-0204.25.pdiff [6843 B] Get:5 http://localhost:3142/debian unstable/non-free Sources T-2025-06-18-1404.12-F-2025-06-18-1404.12.pdiff [1593 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-06-18-1404.12-F-2025-06-18-0204.25.pdiff [17.2 kB] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-06-18-1404.12-F-2025-06-18-0204.25.pdiff [6843 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-06-18-1404.12-F-2025-06-18-0204.25.pdiff [17.2 kB] Get:8 http://localhost:3142/debian unstable/main armhf Packages [9612 kB] Fetched 10.0 MB in 3s (3679 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 libc6-dev 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5534 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 libc6-dev amd64 2.41-9 [1989 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libc-dev-bin amd64 2.41-9 [58.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libc6 amd64 2.41-9 [2851 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libc-bin amd64 2.41-9 [636 kB] Preconfiguring packages ... Fetched 5534 kB in 0s (163 MB/s) (Reading database ... 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Setting up libc6-dev:amd64 (2.41-9) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'phyx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/phyx.git Please use: git clone https://salsa.debian.org/med-team/phyx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1226 kB of source archives. Get:1 http://localhost:3142/debian unstable/main phyx 1.3.2+ds-1 (dsc) [2177 B] Get:2 http://localhost:3142/debian unstable/main phyx 1.3.2+ds-1 (tar) [1214 kB] Get:3 http://localhost:3142/debian unstable/main phyx 1.3.2+ds-1 (diff) [10.4 kB] Fetched 1226 kB in 0s (20.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/phyx-ayDIKk/phyx-1.3.2+ds' with '<>' I: NOTICE: Log filtering will replace 'build/phyx-ayDIKk' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), python3:any, liblapack-dev, libnlopt-cxx-dev, libnlopt-dev, libarmadillo-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), python3:any, liblapack-dev, libnlopt-cxx-dev, libnlopt-dev, libarmadillo-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [792 B] Get:5 copy:/<>/apt_archive ./ Packages [835 B] Fetched 2236 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils comerr-dev:armhf cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base hdf5-helpers:armhf intltool-debian krb5-multidev:armhf libaec-dev:armhf libaec0:armhf libarchive-zip-perl libarmadillo-dev:armhf libarmadillo14:armhf libarpack2-dev:armhf libarpack2t64:armhf libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libblas-dev:armhf libblas3:armhf libbrotli-dev:armhf libbrotli1:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libcrypt-dev:armhf libcrypt1:armhf libcurl4-openssl-dev:armhf libcurl4t64:armhf libdb5.3t64:armhf libdebhelper-perl libelf1t64 libevent-2.1-7t64:armhf libexpat1 libfakeroot libffi8 libffi8:armhf libfile-stripnondeterminism-perl libgcc-14-dev:armhf libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgfortran5:armhf libgmp-dev:armhf libgmp10:armhf libgmpxx4ldbl:armhf libgnutls-dane0t64:armhf libgnutls-openssl27t64:armhf libgnutls28-dev:armhf libgnutls30t64:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libgssrpc4t64:armhf libhdf5-310:armhf libhdf5-cpp-310:armhf libhdf5-dev:armhf libhdf5-fortran-310:armhf libhdf5-hl-310:armhf libhdf5-hl-cpp-310:armhf libhdf5-hl-fortran-310:armhf libhogweed6t64:armhf libidn2-0:armhf libidn2-dev:armhf libjpeg-dev:armhf libjpeg62-turbo:armhf libjpeg62-turbo-dev:armhf libk5crypto3:armhf libkadm5clnt-mit12:armhf libkadm5srv-mit12:armhf libkdb5-10t64:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5-dev:armhf libkrb5support0:armhf liblapack-dev:armhf liblapack3:armhf libldap-dev:armhf libldap2:armhf libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:armhf libnghttp2-14:armhf libnghttp2-dev:armhf libnghttp3-9:armhf libnghttp3-dev:armhf libnlopt-cxx-dev:armhf libnlopt-cxx0:armhf libnlopt-dev:armhf libnlopt0:armhf libp11-kit-dev:armhf libp11-kit0:armhf libpipeline1 libpkgconf3 libpsl-dev:armhf libpsl5t64:armhf libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp-dev:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libssh2-1-dev:armhf libssh2-1t64:armhf libssl-dev:armhf libssl3t64:armhf libstdc++-14-dev:armhf libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsuperlu-dev:armhf libsuperlu7:armhf libsz2:armhf libtasn1-6:armhf libtasn1-6-dev:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunbound8:armhf libunistring5 libunistring5:armhf libxml2 libzstd-dev:armhf libzstd1:armhf linux-libc-dev-armhf-cross m4 man-db media-types netbase nettle-dev:armhf pkgconf:armhf pkgconf-bin po-debconf python3 python3-minimal python3.13 python3.13-minimal readline-common sensible-utils zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:armhf gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc:armhf libitpp-dev:armhf liblapack-doc:armhf glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf libcurl4-doc:armhf libidn-dev:armhf gmp-doc:armhf libgmp10-doc:armhf libmpfr-dev:armhf dns-root-data:armhf gnutls-bin:armhf gnutls-doc:armhf krb5-user:armhf libhdf5-doc:armhf libnghttp2-doc:armhf p11-kit-doc:armhf libssl-doc:armhf libstdc++-14-doc:armhf libsuperlu-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx ca-certificates:armhf libarchive-cpio-perl krb5-locales:armhf libldap-common:armhf libgpm2 publicsuffix:armhf libsasl2-modules:armhf libtasn1-doc:armhf libltdl-dev libmail-sendmail-perl ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils comerr-dev:armhf cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base hdf5-helpers:armhf intltool-debian krb5-multidev:armhf libaec-dev:armhf libaec0:armhf libarchive-zip-perl libarmadillo-dev:armhf libarmadillo14:armhf libarpack2-dev:armhf libarpack2t64:armhf libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libblas-dev:armhf libblas3:armhf libbrotli-dev:armhf libbrotli1:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libcrypt-dev:armhf libcrypt1:armhf libcurl4-openssl-dev:armhf libcurl4t64:armhf libdb5.3t64:armhf libdebhelper-perl libelf1t64 libevent-2.1-7t64:armhf libexpat1 libfakeroot libffi8 libffi8:armhf libfile-stripnondeterminism-perl libgcc-14-dev:armhf libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgfortran5:armhf libgmp-dev:armhf libgmp10:armhf libgmpxx4ldbl:armhf libgnutls-dane0t64:armhf libgnutls-openssl27t64:armhf libgnutls28-dev:armhf libgnutls30t64:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libgssrpc4t64:armhf libhdf5-310:armhf libhdf5-cpp-310:armhf libhdf5-dev:armhf libhdf5-fortran-310:armhf libhdf5-hl-310:armhf libhdf5-hl-cpp-310:armhf libhdf5-hl-fortran-310:armhf libhogweed6t64:armhf libidn2-0:armhf libidn2-dev:armhf libjpeg-dev:armhf libjpeg62-turbo:armhf libjpeg62-turbo-dev:armhf libk5crypto3:armhf libkadm5clnt-mit12:armhf libkadm5srv-mit12:armhf libkdb5-10t64:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5-dev:armhf libkrb5support0:armhf liblapack-dev:armhf liblapack3:armhf libldap-dev:armhf libldap2:armhf libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:armhf libnghttp2-14:armhf libnghttp2-dev:armhf libnghttp3-9:armhf libnghttp3-dev:armhf libnlopt-cxx-dev:armhf libnlopt-cxx0:armhf libnlopt-dev:armhf libnlopt0:armhf libp11-kit-dev:armhf libp11-kit0:armhf libpipeline1 libpkgconf3 libpsl-dev:armhf libpsl5t64:armhf libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp-dev:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libssh2-1-dev:armhf libssh2-1t64:armhf libssl-dev:armhf libssl3t64:armhf libstdc++-14-dev:armhf libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsuperlu-dev:armhf libsuperlu7:armhf libsz2:armhf libtasn1-6:armhf libtasn1-6-dev:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunbound8:armhf libunistring5 libunistring5:armhf libxml2 libzstd-dev:armhf libzstd1:armhf linux-libc-dev-armhf-cross m4 man-db media-types netbase nettle-dev:armhf pkgconf:armhf pkgconf-bin po-debconf python3 python3-minimal python3.13 python3.13-minimal readline-common sbuild-build-depends-main-dummy:armhf sensible-utils zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After this operation, 434 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B] Get:2 http://localhost:3142/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.5-1 [862 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get:4 http://localhost:3142/debian unstable/main amd64 python3.13-minimal amd64 3.13.5-1 [2218 kB] Get:5 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.13.4-1 [27.3 kB] Get:6 http://localhost:3142/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:10 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.5-1 [1957 kB] Get:13 http://localhost:3142/debian unstable/main amd64 python3.13 amd64 3.13.5-1 [757 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.13.4-1 [10.2 kB] Get:15 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.13.4-1 [28.3 kB] Get:16 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:19 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:20 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:22 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:23 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:25 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:26 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:27 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:28 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:29 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:30 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:31 http://localhost:3142/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.44-3 [1501 kB] Get:32 http://localhost:3142/debian unstable/main armhf gcc-14-base armhf 14.2.0-19 [49.4 kB] Get:33 http://localhost:3142/debian unstable/main armhf libgcc-s1 armhf 14.2.0-19 [37.0 kB] Get:34 http://localhost:3142/debian unstable/main armhf libc6 armhf 2.41-9 [2255 kB] Get:35 http://localhost:3142/debian unstable/main armhf libcrypt1 armhf 1:4.4.38-1 [95.6 kB] Get:36 http://localhost:3142/debian unstable/main armhf libcrypt-dev armhf 1:4.4.38-1 [125 kB] Get:37 http://localhost:3142/debian unstable/main armhf libc6-dev armhf 2.41-9 [1327 kB] Get:38 http://localhost:3142/debian unstable/main armhf libcom-err2 armhf 1.47.2-3 [24.0 kB] Get:39 http://localhost:3142/debian unstable/main armhf comerr-dev armhf 2.1-1.47.2-3 [55.9 kB] Get:40 http://localhost:3142/debian unstable/main amd64 gcc-14-arm-linux-gnueabihf-base amd64 14.2.0-19cross1 [49.6 kB] Get:41 http://localhost:3142/debian unstable/main amd64 cpp-14-arm-linux-gnueabihf amd64 14.2.0-19cross1 [10.4 MB] Get:42 http://localhost:3142/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:14.2.0-1 [4856 B] Get:43 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libc6-armhf-cross all 2.41-8cross1 [921 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armhf-cross all 14.2.0-19cross1 [36.9 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libgomp1-armhf-cross all 14.2.0-19cross1 [109 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libatomic1-armhf-cross all 14.2.0-19cross1 [6936 B] Get:48 http://localhost:3142/debian unstable/main amd64 libasan8-armhf-cross all 14.2.0-19cross1 [2571 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libstdc++6-armhf-cross all 14.2.0-19cross1 [559 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libubsan1-armhf-cross all 14.2.0-19cross1 [1038 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-armhf-cross all 14.2.0-19cross1 [768 kB] Get:52 http://localhost:3142/debian unstable/main amd64 gcc-14-arm-linux-gnueabihf amd64 14.2.0-19cross1 [19.8 MB] Get:53 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:14.2.0-1 [1452 B] Get:54 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armhf-cross all 6.12.29-1cross1 [2382 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libc6-dev-armhf-cross all 2.41-8cross1 [1324 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-armhf-cross all 14.2.0-19cross1 [2347 kB] Get:57 http://localhost:3142/debian unstable/main amd64 g++-14-arm-linux-gnueabihf amd64 14.2.0-19cross1 [11.4 MB] Get:58 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:14.2.0-1 [1208 B] Get:59 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armhf all 12.12 [3548 B] Get:60 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:62 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:65 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:66 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:67 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:70 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:71 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:72 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:73 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:75 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:76 http://localhost:3142/debian unstable/main armhf hdf5-helpers armhf 1.14.5+repack-3 [26.6 kB] Get:77 http://localhost:3142/debian unstable/main armhf libkrb5support0 armhf 1.21.3-5 [30.4 kB] Get:78 http://localhost:3142/debian unstable/main armhf libk5crypto3 armhf 1.21.3-5 [76.0 kB] Get:79 http://localhost:3142/debian unstable/main armhf libkeyutils1 armhf 1.6.3-6 [8568 B] Get:80 http://localhost:3142/debian unstable/main armhf libzstd1 armhf 1.5.7+dfsg-1 [264 kB] Get:81 http://localhost:3142/debian unstable/main armhf zlib1g armhf 1:1.3.dfsg+really1.3.1-1+b1 [75.2 kB] Get:82 http://localhost:3142/debian unstable/main armhf libssl3t64 armhf 3.5.0-2 [1980 kB] Get:83 http://localhost:3142/debian unstable/main armhf libkrb5-3 armhf 1.21.3-5 [284 kB] Get:84 http://localhost:3142/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-5 [116 kB] Get:85 http://localhost:3142/debian unstable/main armhf libgssrpc4t64 armhf 1.21.3-5 [52.9 kB] Get:86 http://localhost:3142/debian unstable/main armhf libkadm5clnt-mit12 armhf 1.21.3-5 [37.7 kB] Get:87 http://localhost:3142/debian unstable/main armhf libkdb5-10t64 armhf 1.21.3-5 [37.6 kB] Get:88 http://localhost:3142/debian unstable/main armhf libkadm5srv-mit12 armhf 1.21.3-5 [47.6 kB] Get:89 http://localhost:3142/debian unstable/main armhf krb5-multidev armhf 1.21.3-5 [126 kB] Get:90 http://localhost:3142/debian unstable/main armhf libaec0 armhf 1.1.3-1+b1 [21.9 kB] Get:91 http://localhost:3142/debian unstable/main armhf libsz2 armhf 1.1.3-1+b1 [8036 B] Get:92 http://localhost:3142/debian unstable/main armhf libaec-dev armhf 1.1.3-1+b1 [19.3 kB] Get:93 http://localhost:3142/debian unstable/main armhf libblas3 armhf 3.12.1-2 [116 kB] Get:94 http://localhost:3142/debian unstable/main armhf libgfortran5 armhf 14.2.0-19 [263 kB] Get:95 http://localhost:3142/debian unstable/main armhf liblapack3 armhf 3.12.1-2 [1835 kB] Get:96 http://localhost:3142/debian unstable/main armhf libarpack2t64 armhf 3.9.1-6 [85.4 kB] Get:97 http://localhost:3142/debian unstable/main armhf libstdc++6 armhf 14.2.0-19 [607 kB] Get:98 http://localhost:3142/debian unstable/main armhf libarmadillo14 armhf 1:14.2.3+dfsg-1 [99.7 kB] Get:99 http://localhost:3142/debian unstable/main armhf libblas-dev armhf 3.12.1-2 [127 kB] Get:100 http://localhost:3142/debian unstable/main armhf liblapack-dev armhf 3.12.1-2 [1935 kB] Get:101 http://localhost:3142/debian unstable/main armhf libarpack2-dev armhf 3.9.1-6 [103 kB] Get:102 http://localhost:3142/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b7 [284 kB] Get:103 http://localhost:3142/debian unstable/main armhf libunistring5 armhf 1.3-2 [441 kB] Get:104 http://localhost:3142/debian unstable/main armhf libidn2-0 armhf 2.3.8-2 [105 kB] Get:105 http://localhost:3142/debian unstable/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [602 kB] Get:106 http://localhost:3142/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-9 [18.5 kB] Get:107 http://localhost:3142/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-9 [50.4 kB] Get:108 http://localhost:3142/debian unstable/main armhf libldap2 armhf 2.6.10+dfsg-1 [168 kB] Get:109 http://localhost:3142/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1.1 [63.0 kB] Get:110 http://localhost:3142/debian unstable/main armhf libnghttp3-9 armhf 1.8.0-1 [59.9 kB] Get:111 http://localhost:3142/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get:112 http://localhost:3142/debian unstable/main armhf libgmp10 armhf 2:6.3.0+dfsg-3 [512 kB] Get:113 http://localhost:3142/debian unstable/main armhf libnettle8t64 armhf 3.10.1-1 [312 kB] Get:114 http://localhost:3142/debian unstable/main armhf libhogweed6t64 armhf 3.10.1-1 [322 kB] Get:115 http://localhost:3142/debian unstable/main armhf libffi8 armhf 3.4.8-2 [20.4 kB] Get:116 http://localhost:3142/debian unstable/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB] Get:117 http://localhost:3142/debian unstable/main armhf libtasn1-6 armhf 4.20.0-2 [44.4 kB] Get:118 http://localhost:3142/debian unstable/main armhf libgnutls30t64 armhf 3.8.9-2 [1382 kB] Get:119 http://localhost:3142/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get:120 http://localhost:3142/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get:121 http://localhost:3142/debian unstable/main armhf libcurl4t64 armhf 8.14.1-1 [338 kB] Get:122 http://localhost:3142/debian unstable/main armhf libhdf5-310 armhf 1.14.5+repack-3 [1272 kB] Get:123 http://localhost:3142/debian unstable/main armhf libhdf5-fortran-310 armhf 1.14.5+repack-3 [102 kB] Get:124 http://localhost:3142/debian unstable/main armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [67.3 kB] Get:125 http://localhost:3142/debian unstable/main armhf libhdf5-hl-fortran-310 armhf 1.14.5+repack-3 [38.3 kB] Get:126 http://localhost:3142/debian unstable/main armhf libhdf5-cpp-310 armhf 1.14.5+repack-3 [125 kB] Get:127 http://localhost:3142/debian unstable/main armhf libhdf5-hl-cpp-310 armhf 1.14.5+repack-3 [24.1 kB] Get:128 http://localhost:3142/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get:129 http://localhost:3142/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-4 [146 kB] Get:130 http://localhost:3142/debian unstable/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-4 [262 kB] Get:131 http://localhost:3142/debian unstable/main armhf libjpeg-dev armhf 1:2.1.5-4 [72.2 kB] Get:132 http://localhost:3142/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b7 [294 kB] Get:133 http://localhost:3142/debian unstable/main armhf libidn2-dev armhf 2.3.8-2 [97.6 kB] Get:134 http://localhost:3142/debian unstable/main armhf libkrb5-dev armhf 1.21.3-5 [16.1 kB] Get:135 http://localhost:3142/debian unstable/main armhf libldap-dev armhf 2.6.10+dfsg-1 [286 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:137 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:138 http://localhost:3142/debian unstable/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get:139 http://localhost:3142/debian unstable/main armhf libnghttp2-dev armhf 1.64.0-1.1 [103 kB] Get:140 http://localhost:3142/debian unstable/main armhf libnghttp3-dev armhf 1.8.0-1 [84.8 kB] Get:141 http://localhost:3142/debian unstable/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Get:142 http://localhost:3142/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-3 [328 kB] Get:143 http://localhost:3142/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-3 [592 kB] Get:144 http://localhost:3142/debian unstable/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Get:145 http://localhost:3142/debian unstable/main armhf libunbound8 armhf 1.22.0-1+b1 [539 kB] Get:146 http://localhost:3142/debian unstable/main armhf libgnutls-dane0t64 armhf 3.8.9-2 [446 kB] Get:147 http://localhost:3142/debian unstable/main armhf libgnutls-openssl27t64 armhf 3.8.9-2 [446 kB] Get:148 http://localhost:3142/debian unstable/main armhf libp11-kit-dev armhf 0.25.5-3 [208 kB] Get:149 http://localhost:3142/debian unstable/main armhf libtasn1-6-dev armhf 4.20.0-2 [93.4 kB] Get:150 http://localhost:3142/debian unstable/main armhf nettle-dev armhf 3.10.1-1 [1314 kB] Get:151 http://localhost:3142/debian unstable/main armhf libgnutls28-dev armhf 3.8.9-2 [1337 kB] Get:152 http://localhost:3142/debian unstable/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB] Get:153 http://localhost:3142/debian unstable/main armhf libssl-dev armhf 3.5.0-2 [2562 kB] Get:154 http://localhost:3142/debian unstable/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Get:155 http://localhost:3142/debian unstable/main armhf libzstd-dev armhf 1.5.7+dfsg-1 [333 kB] Get:156 http://localhost:3142/debian unstable/main armhf libcurl4-openssl-dev armhf 8.14.1-1 [469 kB] Get:157 http://localhost:3142/debian unstable/main armhf libhdf5-dev armhf 1.14.5+repack-3 [3091 kB] Get:158 http://localhost:3142/debian unstable/main armhf libsuperlu7 armhf 7.0.1+dfsg1-2 [143 kB] Get:159 http://localhost:3142/debian unstable/main armhf libsuperlu-dev armhf 7.0.1+dfsg1-2 [22.0 kB] Get:160 http://localhost:3142/debian unstable/main armhf libarmadillo-dev armhf 1:14.2.3+dfsg-1 [414 kB] Get:161 http://localhost:3142/debian unstable/main armhf libasan8 armhf 14.2.0-19 [2583 kB] Get:162 http://localhost:3142/debian unstable/main armhf libatomic1 armhf 14.2.0-19 [7200 B] Get:163 http://localhost:3142/debian unstable/main armhf libgomp1 armhf 14.2.0-19 [111 kB] Get:164 http://localhost:3142/debian unstable/main armhf libubsan1 armhf 14.2.0-19 [1040 kB] Get:165 http://localhost:3142/debian unstable/main armhf libgcc-14-dev armhf 14.2.0-19 [768 kB] Get:166 http://localhost:3142/debian unstable/main armhf libnlopt0 armhf 2.7.1-6+b4 [144 kB] Get:167 http://localhost:3142/debian unstable/main armhf libnlopt-dev armhf 2.7.1-6+b4 [46.8 kB] Get:168 http://localhost:3142/debian unstable/main armhf libnlopt-cxx0 armhf 2.7.1-6+b4 [162 kB] Get:169 http://localhost:3142/debian unstable/main armhf libnlopt-cxx-dev armhf 2.7.1-6+b4 [13.5 kB] Get:170 http://localhost:3142/debian unstable/main armhf libstdc++-14-dev armhf 14.2.0-19 [2380 kB] Preconfiguring packages ... Fetched 115 MB in 1s (188 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... 12888 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.5-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-1_amd64.deb ... Unpacking python3.13-minimal (3.13.5-1) ... Setting up libpython3.13-minimal:amd64 (3.13.5-1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.5-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13222 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.4-1_amd64.deb ... Unpacking python3-minimal (3.13.4-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-1_amd64.deb ... Unpacking python3.13 (3.13.5-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Selecting previously unselected package libhdf5-cpp-310:armhf. Preparing to unpack .../111-libhdf5-cpp-310_1.14.5+repack-3_armhf.deb ... Unpacking libhdf5-cpp-310:armhf (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-cpp-310:armhf. Preparing to unpack .../112-libhdf5-hl-cpp-310_1.14.5+repack-3_armhf.deb ... Unpacking libhdf5-hl-cpp-310:armhf (1.14.5+repack-3) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../113-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../114-libjpeg62-turbo_1%3a2.1.5-4_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.1.5-4) ... Selecting previously unselected package libjpeg62-turbo-dev:armhf. Preparing to unpack .../115-libjpeg62-turbo-dev_1%3a2.1.5-4_armhf.deb ... Unpacking libjpeg62-turbo-dev:armhf (1:2.1.5-4) ... 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Selecting previously unselected package libp11-kit-dev:armhf. Preparing to unpack .../133-libp11-kit-dev_0.25.5-3_armhf.deb ... Unpacking libp11-kit-dev:armhf (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:armhf. Preparing to unpack .../134-libtasn1-6-dev_4.20.0-2_armhf.deb ... Unpacking libtasn1-6-dev:armhf (4.20.0-2) ... Selecting previously unselected package nettle-dev:armhf. Preparing to unpack .../135-nettle-dev_3.10.1-1_armhf.deb ... Unpacking nettle-dev:armhf (3.10.1-1) ... Selecting previously unselected package libgnutls28-dev:armhf. Preparing to unpack .../136-libgnutls28-dev_3.8.9-2_armhf.deb ... Unpacking libgnutls28-dev:armhf (3.8.9-2) ... Selecting previously unselected package librtmp-dev:armhf. Preparing to unpack .../137-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_armhf.deb ... Unpacking librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssl-dev:armhf. 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Preparing to unpack .../155-libstdc++-14-dev_14.2.0-19_armhf.deb ... Unpacking libstdc++-14-dev:armhf (14.2.0-19) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armhf. Preparing to unpack .../156-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libc6-armhf-cross (2.41-8cross1) ... Setting up bsdextrautils (2.41-5) ... Setting up hdf5-helpers:armhf (1.14.5+repack-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:armhf (14.2.0-19) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gcc-14-arm-linux-gnueabihf-base:amd64 (14.2.0-19cross1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up gcc-14-cross-base (14.2.0-19cross1) ... Setting up file (1:5.46-5) ... Setting up libatomic1-armhf-cross (14.2.0-19cross1) ... Setting up libfakeroot:amd64 (1.37.1.2-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20240727.1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up linux-libc-dev-armhf-cross (6.12.29-1cross1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.5) ... Setting up binutils-arm-linux-gnueabihf (2.44-3) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up cpp-14-arm-linux-gnueabihf (14.2.0-19cross1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (14.2.0-19cross1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up libgcc-s1-armhf-cross (14.2.0-19cross1) ... Setting up libc6-dev-armhf-cross (2.41-8cross1) ... Setting up pkgconf:armhf (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-armhf-cross (14.2.0-19cross1) ... Setting up libubsan1-armhf-cross (14.2.0-19cross1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-1) ... Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up libpython3-stdlib:amd64 (3.13.4-1) ... Setting up libasan8-armhf-cross (14.2.0-19cross1) ... Setting up python3.13 (3.13.5-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.4-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-14-dev-armhf-cross (14.2.0-19cross1) ... Setting up libstdc++-14-dev-armhf-cross (14.2.0-19cross1) ... Setting up gcc-14-arm-linux-gnueabihf (14.2.0-19cross1) ... Setting up debhelper (13.24.2) ... Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up g++-14-arm-linux-gnueabihf (14.2.0-19cross1) ... Setting up g++-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up crossbuild-essential-armhf (12.12) ... Setting up libgcc-s1:armhf (14.2.0-19) ... Setting up libc6:armhf (2.41-9) ... Setting up libnghttp3-9:armhf (1.8.0-1) ... Setting up libnghttp3-dev:armhf (1.8.0-1) ... Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ... Setting up libffi8:armhf (3.4.8-2) ... Setting up libasan8:armhf (14.2.0-19) ... Setting up libtasn1-6:armhf (4.20.0-2) ... Setting up libtasn1-6-dev:armhf (4.20.0-2) ... Setting up libstdc++6:armhf (14.2.0-19) ... Setting up libzstd1:armhf (1.5.7+dfsg-1) ... Setting up libkeyutils1:armhf (1.6.3-6) ... Setting up libzstd-dev:armhf (1.5.7+dfsg-1) ... Setting up libbrotli1:armhf (1.1.0-2+b7) ... Setting up libnghttp2-14:armhf (1.64.0-1.1) ... Setting up libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ... Setting up libnlopt0:armhf (2.7.1-6+b4) ... Setting up zlib1g:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:armhf (1:4.4.38-1) ... Setting up libcom-err2:armhf (1.47.2-3) ... Setting up libgomp1:armhf (14.2.0-19) ... Setting up libaec0:armhf (1.1.3-1+b1) ... Setting up libkrb5support0:armhf (1.21.3-5) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-9) ... Setting up libnettle8t64:armhf (3.10.1-1) ... Setting up libblas3:armhf (3.12.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.1.5-4) ... Setting up libgmp10:armhf (2:6.3.0+dfsg-3) ... Setting up libp11-kit0:armhf (0.25.5-3) ... Setting up libunistring5:armhf (1.3-2) ... Setting up libatomic1:armhf (14.2.0-19) ... Setting up libk5crypto3:armhf (1.21.3-5) ... Setting up libgfortran5:armhf (14.2.0-19) ... Setting up libnlopt-cxx0:armhf (2.7.1-6+b4) ... Setting up libubsan1:armhf (14.2.0-19) ... Setting up libhogweed6t64:armhf (3.10.1-1) ... Setting up libcrypt-dev:armhf (1:4.4.38-1) ... Setting up libc6-dev:armhf (2.41-9) ... Setting up libgcc-14-dev:armhf (14.2.0-19) ... Setting up libnlopt-dev:armhf (2.7.1-6+b4) ... Setting up libstdc++-14-dev:armhf (14.2.0-19) ... Setting up libbrotli-dev:armhf (1.1.0-2+b7) ... Setting up libp11-kit-dev:armhf (0.25.5-3) ... Setting up libblas-dev:armhf (3.12.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsz2:armhf (1.1.3-1+b1) ... Setting up libnghttp2-dev:armhf (1.64.0-1.1) ... Setting up liblapack3:armhf (3.12.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libarpack2t64:armhf (3.9.1-6) ... Setting up libssl3t64:armhf (3.5.0-2) ... Setting up libaec-dev:armhf (1.1.3-1+b1) ... Setting up libidn2-0:armhf (2.3.8-2) ... Setting up libsuperlu7:armhf (7.0.1+dfsg1-2) ... Setting up libnlopt-cxx-dev:armhf (2.7.1-6+b4) ... Setting up libunbound8:armhf (1.22.0-1+b1) ... Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-3) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-4) ... Setting up comerr-dev:armhf (2.1-1.47.2-3) ... Setting up libssl-dev:armhf (3.5.0-2) ... Setting up liblapack-dev:armhf (3.12.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libidn2-dev:armhf (2.3.8-2) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-9) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libarmadillo14:armhf (1:14.2.3+dfsg-1) ... Setting up libkrb5-3:armhf (1.21.3-5) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libsuperlu-dev:armhf (7.0.1+dfsg1-2) ... Setting up libldap2:armhf (2.6.10+dfsg-1) ... Setting up libgnutls30t64:armhf (3.8.9-2) ... Setting up libgnutls-openssl27t64:armhf (3.8.9-2) ... Setting up libarpack2-dev:armhf (3.9.1-6) ... Setting up libgmp-dev:armhf (2:6.3.0+dfsg-3) ... Setting up nettle-dev:armhf (3.10.1-1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up libjpeg-dev:armhf (1:2.1.5-4) ... Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:armhf (3.8.9-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libldap-dev:armhf (2.6.10+dfsg-1) ... Setting up libgssapi-krb5-2:armhf (1.21.3-5) ... Setting up libssh2-1-dev:armhf (1.11.1-1) ... Setting up libgnutls28-dev:armhf (3.8.9-2) ... Setting up libcurl4t64:armhf (8.14.1-1) ... Setting up libgssrpc4t64:armhf (1.21.3-5) ... Setting up librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:armhf (1.14.5+repack-3) ... Setting up libhdf5-fortran-310:armhf (1.14.5+repack-3) ... Setting up libkadm5clnt-mit12:armhf (1.21.3-5) ... Setting up libhdf5-cpp-310:armhf (1.14.5+repack-3) ... Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... Setting up libkdb5-10t64:armhf (1.21.3-5) ... Setting up libkadm5srv-mit12:armhf (1.21.3-5) ... Setting up krb5-multidev:armhf (1.21.3-5) ... Setting up libhdf5-hl-cpp-310:armhf (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:armhf (1.14.5+repack-3) ... Setting up libkrb5-dev:armhf (1.21.3-5) ... Setting up libcurl4-openssl-dev:armhf (8.14.1-1) ... Setting up libhdf5-dev:armhf (1.14.5+repack-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libarmadillo-dev:armhf (1:14.2.3+dfsg-1) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-armhf-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-armhf-cross_14.2.0-19cross1 linux-libc-dev_6.12.32-1 Package versions: apt_3.0.2 apt-utils_3.0.2 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b2 binutils_2.44-3 binutils-arm-linux-gnueabihf_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-3 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-arm-linux-gnueabihf_14.2.0-19cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-arm-linux-gnueabihf_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-armhf_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-arm-linux-gnueabihf_14.2.0-19cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-arm-linux-gnueabihf_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-arm-linux-gnueabihf_14.2.0-19cross1 gcc-14-arm-linux-gnueabihf-base_14.2.0-19cross1 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-arm-linux-gnueabihf_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hdf5-helpers_1.14.5+repack-3 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libaec-dev_1.1.3-1+b1 libaec0_1.1.3-1+b1 libapt-pkg7.0_3.0.2 libarchive-zip-perl_1.68-1 libarmadillo-dev_1:14.2.3+dfsg-1 libarmadillo14_1:14.2.3+dfsg-1 libarpack2-dev_3.9.1-6 libarpack2t64_3.9.1-6 libasan8_14.2.0-19 libasan8-armhf-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-armhf-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblas-dev_3.12.1-2 libblas3_3.12.1-2 libblkid1_2.41-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc6_2.41-9 libc6-armhf-cross_2.41-8cross1 libc6-dev_2.41-9 libc6-dev-armhf-cross_2.41-8cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-8 libcc1-0_14.2.0-19 libcom-err2_1.47.2-3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl4-openssl-dev_8.14.1-1 libcurl4t64_8.14.1-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.20 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.1-1 libfakeroot_1.37.1.2-1 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-19 libgcc-14-dev-armhf-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-armhf-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_14.2.0-19 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-armhf-cross_14.2.0-19cross1 libgprofng0_2.44-3 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libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1.1 libnghttp2-dev_1.64.0-1.1 libnghttp3-9_1.8.0-1 libnghttp3-dev_1.8.0-1 libnlopt-cxx-dev_2.7.1-6+b4 libnlopt-cxx0_2.7.1-6+b4 libnlopt-dev_2.7.1-6+b4 libnlopt0_2.7.1-6+b4 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-3 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.13.4-1 libpython3.13-minimal_3.13.5-1 libpython3.13-stdlib_3.13.5-1 libquadmath0_14.2.0-19 libreadline8t64_8.2-6 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.5.0-2 libssl3t64_3.5.0-2 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-armhf-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-armhf-cross_14.2.0-19cross1 libsuperlu-dev_7.0.1+dfsg1-2 libsuperlu7_7.0.1+dfsg1-2 libsystemd0_257.6-1 libsz2_1.1.3-1+b1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libubsan1-armhf-cross_14.2.0-19cross1 libuchardet0_0.0.8-1+b2 libudev1_257.6-1 libunbound8_1.22.0-1+b1 libunistring5_1.3-2 libuuid1_2.41-5 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.32-1 linux-libc-dev-armhf-cross_6.12.29-1cross1 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_13.0.0 mount_2.41-5 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 nettle-dev_3.10.1-1 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-1 perl_5.40.1-3 perl-base_5.40.1-3 perl-modules-5.40_5.40.1-3 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 python3_3.13.4-1 python3-minimal_3.13.4-1 python3.13_3.13.5-1 python3.13-minimal_3.13.5-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-3 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: phyx Binary: phyx Architecture: any Version: 1.3.2+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/FePhyFoFum/phyx Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/phyx Vcs-Git: https://salsa.debian.org/med-team/phyx.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), python3:any, liblapack-dev, libnlopt-cxx-dev, libnlopt-dev, libarmadillo-dev Package-List: phyx deb science optional arch=any Checksums-Sha1: ff5e6371d8f9fdc2366e08b54ef844468fd23308 1213536 phyx_1.3.2+ds.orig.tar.xz 1338a7738445072cf15b6de8567be8566fdf46ab 10420 phyx_1.3.2+ds-1.debian.tar.xz Checksums-Sha256: 10cb2d18254f0779fbd8fb6c9dfd9b710054e1800b2453c3403722107c2ab392 1213536 phyx_1.3.2+ds.orig.tar.xz 019134a6fe66f4e6c99d76e93836f4ec51156211e36565f271f06ddd19454bb2 10420 phyx_1.3.2+ds-1.debian.tar.xz Files: 84966df55591acec4d10fe82cc8ac7b8 1213536 phyx_1.3.2+ds.orig.tar.xz 143b92b74fecd9d02a4db48a8defee8a 10420 phyx_1.3.2+ds-1.debian.tar.xz Dgit: c8f8e06091122a0c36e72e9f48e3a433d2529446 debian archive/debian/1.3.2+ds-1 https://git.dgit.debian.org/phyx -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcmSs8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrcjg/+NJ9fE0CY3YK5U/bixp6Iy/a/ewjN vkYRGSm6oJiglMWqf5szTYmhnPcWIdtxuSLSBlNZFf7DtvqotnLoAOnNweLK/N+B LWeWhLBYCRcQNENHNCDMBMSi3ITZDDW1ZJGxLBFNXsq7AgY6OybnfRowwmyAQXTN HOz+KPwTJby3T17x3013roU9Plm/XOhjYTIG98/ayr/EdA1RJL7TTmcUxAsc77ve ycbO79GHYg/AmDBG42XbqD5qPX/4wBLzrJ/wlMVa3EIe2tZoLdBOEL4+7yuy996P 2QkmDbWUhsXnz+70oQyXv1h+uT33kopG2aBsm5NJkgCnK5xt50tQGJgAqAsXj434 Qny2dN6rMJx8uYHs5Dp4MByXOCLopOFUldj1J2xAYi28ECaIjWeYvjlCYpQQ27wb 7ZcUnN4ZBe926kA9oyY3rtMtl+svjKguEsDwAhU0HSCErP8y2ah7JJJLysqd2Hmi 5X1RR9TW/qMBF2wrYRkYOBdGG54MdNOemCAn+gY5c0Zbnj3yWy6VyGnRLcLLjkRi P5yXqq6by/pudHzrU1tFrNfCpWVAEEZkK7u58iA1DQSUB6vfMdFJHMHwBeyG4lCh 0SxFSB0bokUbC8RxMQ4Qctof7cxNlkY6zmYajQtPfLCIniCW3aCkJUIP8GEPAbSZ H1LNLGDSLm820O0= =2Swv -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./phyx_1.3.2+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting phyx in /<> dpkg-source: info: unpacking phyx_1.3.2+ds.orig.tar.xz dpkg-source: info: unpacking phyx_1.3.2+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build-more-programs.patch dpkg-source: info: applying whatis.patch dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.iOANiazC4d/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-ecdc892f-b26d-421c-bfc5-27f68afd66ee SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package phyx dpkg-buildpackage: info: source version 1.3.2+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf src/phyx.logfile if [ -r src/Makefile ]; then \ /usr/bin/make -C src distclean; \ fi make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src cd src && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabihf-g++ accepts -g... yes checking for arm-linux-gnueabihf-g++ option to enable C++11 features... none needed checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed checking for fabs in -lm... yes checking for nlopt_version in -lnlopt... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for nlopt.h... yes checking for library containing wrapper_sgesv_... -larmadillo checking for fenv.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for inline... inline checking for size_t... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking for GNU libc compatible malloc... yes checking for working strtod... no checking for pow... yes checking for floor... yes checking for pow... (cached) yes checking for sqrt... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h dh_auto_build -a -O--sourcedirectory=src cd src && make -j1 make[1]: Entering directory '/<>/src' arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "utils.d" -o "utils.o" "utils.cpp" In file included from /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/14/algorithm:61, from utils.cpp:6: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "citations.d" -o "citations.o" "citations.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "log.d" -o "log.o" "log.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "superdouble.d" -o "superdouble.o" "superdouble.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "timer.d" -o "timer.o" "timer.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "sequence.d" -o "sequence.o" "sequence.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "seq_reader.d" -o "seq_reader.o" "seq_reader.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "seq_utils.d" -o "seq_utils.o" "seq_utils.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "seq_models.d" -o "seq_models.o" "seq_models.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "pairwise_alignment.d" -o "pairwise_alignment.o" "pairwise_alignment.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "aa2cdn.d" -o "aa2cdn.o" "aa2cdn.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_aa2cdn.d" -o "main_aa2cdn.o" "main_aa2cdn.cpp" building pxaa2cdn arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxaa2cdn" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize aa2cdn.o main_aa2cdn.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxaa2cdn.1.in > man/pxaa2cdn.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "node.d" -o "node.o" "node.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "tree.d" -o "tree.o" "tree.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "tree_reader.d" -o "tree_reader.o" "tree_reader.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "tree_utils.d" -o "tree_utils.o" "tree_utils.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "bd_sim.d" -o "bd_sim.o" "bd_sim.cpp" In file included from /usr/arm-linux-gnueabihf/include/c++/14/map:62, from bd_sim.cpp:3: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h:2456:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2456 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void BirthDeathSimulator::node_death(Node*)’ at bd_sim.cpp:186:22: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void BirthDeathSimulator::node_death(Node*)’ at bd_sim.cpp:187:34: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void BirthDeathSimulator::node_death(Node*)’ at bd_sim.cpp:187:55: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void BirthDeathSimulator::node_birth(Node*)’ at bd_sim.cpp:198:20: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void BirthDeathSimulator::node_birth(Node*)’ at bd_sim.cpp:199:21: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘Tree* BirthDeathSimulator::make_tree(const bool&)’ at bd_sim.cpp:59:21: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘Tree* BirthDeathSimulator::make_tree(const bool&)’ at bd_sim.cpp:84:33: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘Tree* BirthDeathSimulator::make_tree(const bool&)’ at bd_sim.cpp:95:40: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_bd_sim.d" -o "main_bd_sim.o" "main_bd_sim.cpp" building pxbdsim arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxbdsim" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize bd_sim.o main_bd_sim.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxbdsim.1.in > man/pxbdsim.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "seq_sample.d" -o "seq_sample.o" "seq_sample.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_boot.d" -o "main_boot.o" "main_boot.cpp" building pxboot arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxboot" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize seq_sample.o main_boot.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxboot.1.in > man/pxboot.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_bp.d" -o "main_bp.o" "main_bp.cpp" building pxbp arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxbp" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_bp.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxbp.1.in > man/pxbp.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "concat.d" -o "concat.o" "concat.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_cat.d" -o "main_cat.o" "main_cat.cpp" building pxcat arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxcat" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize concat.o main_cat.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxcat.1.in > man/pxcat.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "clean_seq.d" -o "clean_seq.o" "clean_seq.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_clsq.d" -o "main_clsq.o" "main_clsq.cpp" building pxclsq arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxclsq" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize clean_seq.o main_clsq.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxclsq.1.in > man/pxclsq.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "clean_tree.d" -o "clean_tree.o" "clean_tree.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_cltr.d" -o "main_cltr.o" "main_cltr.cpp" building pxcltr arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxcltr" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize clean_tree.o main_cltr.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxcltr.1.in > man/pxcltr.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "collapse_tree.d" -o "collapse_tree.o" "collapse_tree.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_colt.d" -o "main_colt.o" "main_colt.cpp" building pxcolt arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxcolt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize collapse_tree.o main_colt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxcolt.1.in > man/pxcolt.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "comp_test.d" -o "comp_test.o" "comp_test.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_comp.d" -o "main_comp.o" "main_comp.cpp" building pxcomp arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxcomp" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize comp_test.o main_comp.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxcomp.1.in > man/pxcomp.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_consq.d" -o "main_consq.o" "main_consq.cpp" building pxconsq arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxconsq" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_consq.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxconsq.1.in > man/pxconsq.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_fqfilt.d" -o "main_fqfilt.o" "main_fqfilt.cpp" building pxfqfilt arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxfqfilt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_fqfilt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxfqfilt.1.in > man/pxfqfilt.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "log_manip.d" -o "log_manip.o" "log_manip.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_log.d" -o "main_log.o" "main_log.cpp" building pxlog arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxlog" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize log_manip.o main_log.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxlog.1.in > man/pxlog.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "seq_info.d" -o "seq_info.o" "seq_info.cpp" In file included from /usr/arm-linux-gnueabihf/include/c++/14/map:62, from seq_info.cpp:2: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h:2456:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2456 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = char; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h:2208:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2208 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void SeqInfo::count_chars_indiv_seq(std::string&)’ at seq_info.cpp:39:24: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void SeqInfo::count_chars_indiv_seq(std::string&)’ at seq_info.cpp:44:28: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void SeqInfo::count_chars_indiv_seq(std::string&)’ at seq_info.cpp:46:21: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void SeqInfo::print_summary_table_whole_alignment()’ at seq_info.cpp:272:71: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = char; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void SeqInfo::print_summary_table_whole_alignment()’ at seq_info.cpp:273:56: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_lssq.d" -o "main_lssq.o" "main_lssq.cpp" bulding pxlssq arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxlssq" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize seq_info.o main_lssq.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxlssq.1.in > man/pxlssq.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "tree_info.d" -o "tree_info.o" "tree_info.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_lstr.d" -o "main_lstr.o" "main_lstr.cpp" building pxlstr arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxlstr" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize tree_info.o main_lstr.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxlstr.1.in > man/pxlstr.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_mono.d" -o "main_mono.o" "main_mono.cpp" building pxmono arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxmono" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_mono.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxmono.1.in > man/pxmono.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_mrca.d" -o "main_mrca.o" "main_mrca.cpp" building pxmrca arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxmrca" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_mrca.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxmrca.1.in > man/pxmrca.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_mrca_cut.d" -o "main_mrca_cut.o" "main_mrca_cut.cpp" building pxmrcacut arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxmrcacut" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_mrca_cut.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxmrcacut.1.in > man/pxmrcacut.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_mrca_name.d" -o "main_mrca_name.o" "main_mrca_name.cpp" building pxmrcaname arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxmrcaname" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_mrca_name.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxmrcaname.1.in > man/pxmrcaname.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_nw.d" -o "main_nw.o" "main_nw.cpp" building pxnw arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxnw" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_nw.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxnw.1.in > man/pxnw.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "polytomy.d" -o "polytomy.o" "polytomy.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_poly.d" -o "main_poly.o" "main_poly.cpp" building pxpoly arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxpoly" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize polytomy.o main_poly.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxpoly.1.in > man/pxpoly.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "recode.d" -o "recode.o" "recode.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_recode.d" -o "main_recode.o" "main_recode.cpp" building pxrecode arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxrecode" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize recode.o main_recode.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxrecode.1.in > man/pxrecode.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_revcomp.d" -o "main_revcomp.o" "main_revcomp.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "edlib.d" -o "edlib.o" "edlib.cpp" building pxrevcomp arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxrevcomp" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_revcomp.o edlib.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxrevcomp.1.in > man/pxrevcomp.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "relabel.d" -o "relabel.o" "relabel.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_rls.d" -o "main_rls.o" "main_rls.cpp" building pxrls arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxrls" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize relabel.o main_rls.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxrls.1.in > man/pxrls.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "upgma.d" -o "upgma.o" "upgma.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_upgma.d" -o "main_upgma.o" "main_upgma.cpp" building pxupgma arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxupgma" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize upgma.o main_upgma.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxupgma.1.in > man/pxupgma.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_rlt.d" -o "main_rlt.o" "main_rlt.cpp" building pxrlt arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxrlt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize relabel.o main_rlt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxrlt.1.in > man/pxrlt.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "nj.d" -o "nj.o" "nj.cpp" nj.cpp: In member function ‘void NJOI::CalcQ(const int&, std::vector >&, std::vector >&, std::vector >&)’: nj.cpp:69:25: warning: ‘std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = multiplies; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 69 | std::bind1st(std::multiplies(), static_cast(NumbOfSequences - 2))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_function.h:1435, from /usr/arm-linux-gnueabihf/include/c++/14/bits/refwrap.h:39, from /usr/arm-linux-gnueabihf/include/c++/14/vector:68, from nj.cpp:1: /usr/arm-linux-gnueabihf/include/c++/14/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_nj.d" -o "main_nj.o" "main_nj.cpp" building pxnj arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxnj" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize nj.o main_nj.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxnj.1.in > man/pxnj.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_rmk.d" -o "main_rmk.o" "main_rmk.cpp" building pxrmk arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxrmk" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_rmk.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxrmk.1.in > man/pxrmk.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_rms.d" -o "main_rms.o" "main_rms.cpp" building pxrms arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxrms" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_rms.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxrms.1.in > man/pxrms.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_rmt.d" -o "main_rmt.o" "main_rmt.cpp" building pxrmt arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxrmt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_rmt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxrmt.1.in > man/pxrmt.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_rr.d" -o "main_rr.o" "main_rr.cpp" building pxrr arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxrr" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_rr.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxrr.1.in > man/pxrr.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_s2fa.d" -o "main_s2fa.o" "main_s2fa.cpp" building pxs2fa arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxs2fa" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_s2fa.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxs2fa.1.in > man/pxs2fa.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_s2nex.d" -o "main_s2nex.o" "main_s2nex.cpp" building pxs2nex arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxs2nex" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_s2nex.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxs2nex.1.in > man/pxs2nex.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_s2phy.d" -o "main_s2phy.o" "main_s2phy.cpp" building pxs2phy arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxs2phy" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_s2phy.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxs2phy.1.in > man/pxs2phy.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "rate_model.d" -o "rate_model.o" "rate_model.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "state_reconstructor.d" -o "state_reconstructor.o" "state_reconstructor.cpp" In file included from /usr/arm-linux-gnueabihf/include/c++/14/map:62, from state_reconstructor.cpp:3: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = double; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = std::less; _Alloc = std::allocator > > >]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h:2456:7: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 2456 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = double; _Tp = arma::Mat >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘VectorNodeObject StateReconstructor::conditionals(Node&)’ at state_reconstructor.cpp:217:46: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = double; _Tp = arma::Mat >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘VectorNodeObject StateReconstructor::conditionals_periods(Node&)’ at state_reconstructor.cpp:253:66: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = double; _Tp = arma::Mat >; _Compare = std::less; _Alloc = std::allocator > > >]’, inlined from ‘void StateReconstructor::reverse(Node*)’ at state_reconstructor.cpp:398:57: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree > >, std::_Select1st > > >, std::less, std::allocator > > > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/14/vector:65, from state_reconstructor.cpp:2: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = arma::Mat*]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _ForwardIterator = arma::Mat*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = arma::Mat*]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = arma::Mat*; _Tp = arma::Mat]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = arma::Mat; _Alloc = std::allocator >]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_vector.h:606:31, inlined from ‘RateModel::RateModel(const RateModel&)’ at rate_model.h:11:7: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _ForwardIterator = arma::Mat*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = arma::Mat*]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = arma::Mat*; _Tp = arma::Mat]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Tp = arma::Mat; _Alloc = std::allocator >]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_vector.h:1624:35, inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = arma::Mat; _Alloc = std::allocator >]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/vector.tcc:238:44, inlined from ‘RateModel& RateModel::operator=(const RateModel&)’ at rate_model.h:11:7: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "optimize_state_reconstructor_nlopt.d" -o "optimize_state_reconstructor_nlopt.o" "optimize_state_reconstructor_nlopt.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "optimize_state_reconstructor_periods_nlopt.d" -o "optimize_state_reconstructor_periods_nlopt.o" "optimize_state_reconstructor_periods_nlopt.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "branch_segment.d" -o "branch_segment.o" "branch_segment.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "cont_models.d" -o "cont_models.o" "cont_models.cpp" In file included from /usr/arm-linux-gnueabihf/include/c++/14/map:62, from /usr/include/armadillo:49, from cont_models.cpp:4: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_tree.h:2456:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2456 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘double calc_bm_prune(Tree*, double)’ at cont_models.cpp:241:30: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘double calc_bm_prune(Tree*, double)’ at cont_models.cpp:245:56: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "seq_gen.d" -o "seq_gen.o" "seq_gen.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_seqgen.d" -o "main_seqgen.o" "main_seqgen.cpp" building pxseqgen arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -o "pxseqgen" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_seqgen.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./rate_model.o ./state_reconstructor.o ./optimize_state_reconstructor_nlopt.o ./optimize_state_reconstructor_periods_nlopt.o ./branch_segment.o ./cont_models.o ./seq_gen.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -llapack -lblas -lpthread -lm -lnlopt -larmadillo cat man/pxseqgen.1.in > man/pxseqgen.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_ssort.d" -o "main_ssort.o" "main_ssort.cpp" building pxssort arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxssort" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_ssort.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxssort.1.in > man/pxssort.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "sstat.d" -o "sstat.o" "sstat.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_sstat.d" -o "main_sstat.o" "main_sstat.cpp" building pxsstat arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxsstat" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize sstat.o main_sstat.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxsstat.1.in > man/pxsstat.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_sw.d" -o "main_sw.o" "main_sw.cpp" building pxsw arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxsw" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_sw.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxsw.1.in > man/pxsw.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_t2new.d" -o "main_t2new.o" "main_t2new.cpp" building pxt2new arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxt2new" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_t2new.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxt2new.1.in > man/pxt2new.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_t2nex.d" -o "main_t2nex.o" "main_t2nex.cpp" building pxt2nex arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxt2nex" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_t2nex.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxt2nex.1.in > man/pxt2nex.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_tcol.d" -o "main_tcol.o" "main_tcol.cpp" building pxtcol arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxtcol" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_tcol.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxtcol.1.in > man/pxtcol.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_tcomb.d" -o "main_tcomb.o" "main_tcomb.cpp" building pxtcomb arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxtcomb" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_tcomb.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxtcomb.1.in > man/pxtcomb.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "tgen.d" -o "tgen.o" "tgen.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_tgen.d" -o "main_tgen.o" "main_tgen.cpp" building pxtgen arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxtgen" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize tgen.o main_tgen.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxtgen.1.in > man/pxtgen.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "tlate.d" -o "tlate.o" "tlate.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_tlate.d" -o "main_tlate.o" "main_tlate.cpp" building pxtlate arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxtlate" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize tlate.o main_tlate.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxtlate.1.in > man/pxtlate.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_trt.d" -o "main_trt.o" "main_trt.cpp" building pxtrt arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxtrt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_trt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxtrt.1.in > man/pxtrt.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "tscale.d" -o "tscale.o" "tscale.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_tscale.d" -o "main_tscale.o" "main_tscale.cpp" building pxtscale arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxtscale" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize tscale.o main_tscale.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o cat man/pxtscale.1.in > man/pxtscale.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "vcf_reader.d" -o "vcf_reader.o" "vcf_reader.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_vcf2fa.d" -o "main_vcf2fa.o" "main_vcf2fa.cpp" building pxvcf2fa arm-linux-gnueabihf-g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o "pxvcf2fa" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize vcf_reader.o main_vcf2fa.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o cat man/pxvcf2fa.1.in > man/pxvcf2fa.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "bd_fit.d" -o "bd_fit.o" "bd_fit.cpp" In file included from /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/14/algorithm:61, from bd_fit.cpp:6: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘void BDFit::fit_bd()’ at bd_fit.cpp:102:9: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1908:31, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = greater]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:4805:18, inlined from ‘void BDFit::fit_bd()’ at bd_fit.cpp:102:9: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_bd_fit.d" -o "main_bd_fit.o" "main_bd_fit.cpp" building pxbdfit arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -o "pxbdfit" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize bd_fit.o main_bd_fit.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -llapack -lblas -lpthread -lm -lnlopt -larmadillo cat man/pxbdfit.1.in > man/pxbdfit.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_contrates.d" -o "main_contrates.o" "main_contrates.cpp" arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "optimize_cont_models_nlopt.d" -o "optimize_cont_models_nlopt.o" "optimize_cont_models_nlopt.cpp" building pxcontrates arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -o "pxcontrates" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_contrates.o optimize_cont_models_nlopt.o ./rate_model.o ./state_reconstructor.o ./optimize_state_reconstructor_nlopt.o ./optimize_state_reconstructor_periods_nlopt.o ./branch_segment.o ./cont_models.o ./seq_gen.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -llapack -lblas -lpthread -lm -lnlopt -larmadillo cat man/pxcontrates.1.in > man/pxcontrates.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -fmessage-length=0 -MMD -MP -MF "main_strec.d" -o "main_strec.o" "main_strec.cpp" building pxstrec arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -o "pxstrec" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize main_strec.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./rate_model.o ./state_reconstructor.o ./optimize_state_reconstructor_nlopt.o ./optimize_state_reconstructor_periods_nlopt.o ./branch_segment.o ./cont_models.o ./seq_gen.o -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -llapack -lblas -lpthread -lm -lnlopt -larmadillo # -lgfortran cat man/pxstrec.1.in > man/pxstrec.1 make[1]: Leaving directory '/<>/src' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/<>' mkdir -p /<>/debian/phyx/usr/bin dh_auto_install -- PREFIX=/<>/debian/phyx/usr cd src && make -j1 install DESTDIR=/<>/phyx-1.3.2\+ds/debian/phyx AM_UPDATE_INFO_DIR=no PREFIX=/<>/phyx-1.3.2\+ds/debian/phyx/usr make[2]: Entering directory '/<>/src' mkdir -p /<>/debian/phyx/usr/bin && install -m 0755 px* /<>/debian/phyx/usr/bin mkdir -p /<>/debian/phyx/usr/share/man/man1 && install -m 0755 man/px*.1 /<>/debian/phyx/usr/share/man/man1 make[2]: Leaving directory '/<>/src' #echo "#!/usr/bin/python3" > /<>/debian/phyx/usr/bin/Phyx_Gui #cat src/Phyx_Gui.py >> /<>/debian/phyx/usr/bin/Phyx_Gui make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_lintian -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxrr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxlssq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxcomp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxtcol contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxrms contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxt2nex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxcontrates contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxboot contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxtlate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxseqgen contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxupgma contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxrevcomp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxaa2cdn contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxlog contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxbdfit contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxbp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxrmt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxssort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxnj contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxfqfilt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxmrca contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxs2fa contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxs2nex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxs2phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxvcf2fa contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxbdsim contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxclsq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxtgen contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxsstat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxlstr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxcat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxcltr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxt2new contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxmono contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxcolt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxtscale contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxmrcacut contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxsw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxtrt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxrecode contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxrmk contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxtcomb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxnw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxpoly contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxrls contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxrlt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxstrec contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxconsq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/phyx/usr/bin/pxmrcaname contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'phyx' in '../phyx_1.3.2+ds-1_armhf.deb'. dpkg-deb: building package 'phyx-dbgsym' in '../phyx-dbgsym_1.3.2+ds-1_armhf.deb'. dpkg-genbuildinfo --build=any -O../phyx_1.3.2+ds-1_armhf.buildinfo dpkg-genchanges --build=any -O../phyx_1.3.2+ds-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-06-18T20:27:45Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ---------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ phyx_1.3.2+ds-1_armhf.changes: ------------------------------ Format: 1.8 Date: Sat, 02 Nov 2024 16:22:22 +0100 Source: phyx Binary: phyx phyx-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.3.2+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: phyx - UNIX-style phylogenetic analyses on trees and sequences Changes: phyx (1.3.2+ds-1) unstable; urgency=medium . * New upstream version 1.3.2+ds * d/control: build depends on python3:any. The marker :any will allow cross compilation of phyx. * build-more-programs.patch: unfuzz. * i386.patch: delete: applied upstream. * deoptimize.patch: delete: applied upstream. * whatis.patch: refresh to match new versions and timestamps. * hardening.patch: unfuzz. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: e4dcb00aa1c177d74a682b586b070de6dbf53a95 67599156 phyx-dbgsym_1.3.2+ds-1_armhf.deb c8cdb30637dadc3b883ce43c83c456c480cd15a4 7830 phyx_1.3.2+ds-1_armhf.buildinfo a52164ec654d1a08a93da63bd2402f87e407f2db 1856372 phyx_1.3.2+ds-1_armhf.deb Checksums-Sha256: 209bc3ccb07452adcad4c0fca16c07c9a65f195191cde83718411fdb6a80a24c 67599156 phyx-dbgsym_1.3.2+ds-1_armhf.deb 353e78da0b103117cb5d1e75bd57d47b844b1bb082ed821ebc71fb3044b8d3d7 7830 phyx_1.3.2+ds-1_armhf.buildinfo a04df934332c46b76562783cbd16114004a095fbb933d2bdc773bdac58c7265a 1856372 phyx_1.3.2+ds-1_armhf.deb Files: 024ccaae427686995b5329bb9dc29a32 67599156 debug optional phyx-dbgsym_1.3.2+ds-1_armhf.deb 62a255b573e3bf3ff702ddd39f15a0c9 7830 science optional phyx_1.3.2+ds-1_armhf.buildinfo 9120fa2512b0fec973813548b7270ef4 1856372 science optional phyx_1.3.2+ds-1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: phyx Binary: phyx phyx-dbgsym Architecture: armhf Version: 1.3.2+ds-1 Checksums-Md5: 024ccaae427686995b5329bb9dc29a32 67599156 phyx-dbgsym_1.3.2+ds-1_armhf.deb 9120fa2512b0fec973813548b7270ef4 1856372 phyx_1.3.2+ds-1_armhf.deb Checksums-Sha1: e4dcb00aa1c177d74a682b586b070de6dbf53a95 67599156 phyx-dbgsym_1.3.2+ds-1_armhf.deb a52164ec654d1a08a93da63bd2402f87e407f2db 1856372 phyx_1.3.2+ds-1_armhf.deb Checksums-Sha256: 209bc3ccb07452adcad4c0fca16c07c9a65f195191cde83718411fdb6a80a24c 67599156 phyx-dbgsym_1.3.2+ds-1_armhf.deb a04df934332c46b76562783cbd16114004a095fbb933d2bdc773bdac58c7265a 1856372 phyx_1.3.2+ds-1_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 18 Jun 2025 20:27:45 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b2), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-3), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.20), dpkg-dev (= 1.22.20), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hdf5-helpers (= 1.14.5+repack-3), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libaec-dev (= 1.1.3-1+b1), libaec0 (= 1.1.3-1+b1), libarchive-zip-perl (= 1.68-1), libarmadillo-dev (= 1:14.2.3+dfsg-1), libarmadillo14 (= 1:14.2.3+dfsg-1), libarpack2-dev (= 3.9.1-6), libarpack2t64 (= 3.9.1-6), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblas-dev (= 3.12.1-2), libblas3 (= 3.12.1-2), libblkid1 (= 2.41-5), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-8), libcc1-0 (= 14.2.0-19), libcom-err2 (= 1.47.2-3), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libcurl4-openssl-dev (= 8.14.1-1), libcurl4t64 (= 8.14.1-1), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.278), libdebhelper-perl (= 13.24.2), libdpkg-perl (= 1.22.20), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.1-1), libffi8 (= 3.4.8-2), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran5 (= 14.2.0-19), libgmp-dev (= 2:6.3.0+dfsg-3), libgmp10 (= 2:6.3.0+dfsg-3), libgmpxx4ldbl (= 2:6.3.0+dfsg-3), libgnutls-dane0t64 (= 3.8.9-2), libgnutls-openssl27t64 (= 3.8.9-2), libgnutls28-dev (= 3.8.9-2), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libhdf5-310 (= 1.14.5+repack-3), libhdf5-cpp-310 (= 1.14.5+repack-3), libhdf5-dev (= 1.14.5+repack-3), libhdf5-fortran-310 (= 1.14.5+repack-3), libhdf5-hl-310 (= 1.14.5+repack-3), libhdf5-hl-cpp-310 (= 1.14.5+repack-3), libhdf5-hl-fortran-310 (= 1.14.5+repack-3), libhogweed6t64 (= 3.10.1-1), libhwasan0 (= 14.2.0-19), libidn2-0 (= 2.3.8-2), libidn2-dev (= 2.3.8-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libjpeg-dev (= 1:2.1.5-4), libjpeg62-turbo (= 1:2.1.5-4), libjpeg62-turbo-dev (= 1:2.1.5-4), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblapack-dev (= 3.12.1-2), liblapack3 (= 3.12.1-2), liblastlog2-2 (= 2.41-5), libldap-dev (= 2.6.10+dfsg-1), libldap2 (= 2.6.10+dfsg-1), liblsan0 (= 14.2.0-19), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1.1), libnghttp2-dev (= 1.64.0-1.1), libnghttp3-9 (= 1.8.0-1), libnghttp3-dev (= 1.8.0-1), libnlopt-cxx-dev (= 2.7.1-6+b4), libnlopt-cxx0 (= 2.7.1-6+b4), libnlopt-dev (= 2.7.1-6+b4), libnlopt0 (= 2.7.1-6+b4), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-3), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-stdlib (= 3.13.4-1), libpython3.13-minimal (= 3.13.5-1), libpython3.13-stdlib (= 3.13.5-1), libquadmath0 (= 14.2.0-19), libreadline8t64 (= 8.2-6), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.0-2), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsuperlu-dev (= 7.0.1+dfsg1-2), libsuperlu7 (= 7.0.1+dfsg1-2), libsystemd0 (= 257.6-1), libsz2 (= 1.1.3-1+b1), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.6-1), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libzstd-dev (= 1.5.7+dfsg-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.32-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 13.0.0), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), nettle-dev (= 3.10.1-1), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-1), perl (= 5.40.1-3), perl-base (= 5.40.1-3), perl-modules-5.40 (= 5.40.1-3), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), python3 (= 3.13.4-1), python3-minimal (= 3.13.4-1), python3.13 (= 3.13.5-1), python3.13-minimal (= 3.13.5-1), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-3), util-linux (= 2.41-5), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1730560942" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ phyx-dbgsym_1.3.2+ds-1_armhf.deb -------------------------------- new Debian package, version 2.0. size 67599156 bytes: control archive=2828 bytes. 2334 bytes, 12 lines control 5278 bytes, 50 lines md5sums Package: phyx-dbgsym Source: phyx Version: 1.3.2+ds-1 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 81210 Depends: phyx (= 1.3.2+ds-1) Section: debug Priority: optional Description: debug symbols for phyx Build-Ids: 0bb28d254cd37474dae30d657528cbd99395a660 0edf3ea337aedcc46ce94ce3c2f84f2332b7bdb0 12a3a3b28284a1115691a38babc7bfa1598f03ff 161b52ac1ee9442a7a290850ead8e5209380d37a 1903d558bbd18746a0f68d9dfb55b5ccb462fee3 1a31a66952d547764196dce2cedbdf76e242108f 1cf527a270a520c66fff8d9d3e8f435bfdbf0687 264e4ea9be854f4248665f61492104335681dfdf 2d53105155efd8ed9f01d6d9a66796ec5bf907b6 305167a409d1a7aea234683a6a18b0ee69bb2d93 3290e3948e8c8b7b74fd0f4e3d877364b1387a96 3804ea4b2d8cce548e4bc41e509e027ed2215c15 42ca64f62163905c6e339f083ac7473c56ade2c7 46213a7dee8c988996b44499f3c896f220d0ffc0 49e288a1e7181463f47764041c2017510925d414 4a00ab7cbf1b2206638042f98a82bbb61300e2b8 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1415028 2024-11-02 15:22 ./usr/lib/debug/.build-id/f8/69025690a5f009cee5ac17c35a5f6c13014f7d.debug drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 2125560 2024-11-02 15:22 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/phyx.debug drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/ drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-11-02 15:22 ./usr/share/doc/phyx-dbgsym -> phyx phyx_1.3.2+ds-1_armhf.deb ------------------------- new Debian package, version 2.0. size 1856372 bytes: control archive=5036 bytes. 1345 bytes, 22 lines control 12539 bytes, 176 lines md5sums Package: phyx Version: 1.3.2+ds-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 14553 Depends: libarmadillo14 (>= 1:14.2.3+dfsg), libc6 (>= 2.38), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libnlopt0 (>= 2.6.1), libstdc++6 (>= 13.1), python3 Section: science Priority: optional Homepage: https://github.com/FePhyFoFum/phyx Description: UNIX-style phylogenetic analyses on trees and sequences phyx provides a convenient, lightweight and inclusive toolkit consisting of programs spanning the wide breadth of programs utilized by researchers performing phylogenomic analyses. Modeled after Unix/GNU/Linux command line tools, individual programs perform a single task and operate on standard I/O streams. A result of this stream-centric approach is that, for most programs, only a single sequence or tree is in memory at any moment. Thus, large datasets can be processed with minimal memory requirements. phyx’s ever-growing complement of programs consists of over 35 programs focused on exploring, manipulating, analyzing and simulating phylogenetic objects (alignments, trees and MCMC logs). As with standard Unix command line tools, these programs can be piped (together with non-phyx tools), allowing the easy construction of efficient analytical pipelines. drwxr-xr-x root/root 0 2024-11-02 15:22 ./ drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/ drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/bin/ -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxaa2cdn -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxbdfit -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxbdsim -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxboot -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxbp -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxcat -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxclsq -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxcltr -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxcolt -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxcomp -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxconsq -rwxr-xr-x root/root 592116 2024-11-02 15:22 ./usr/bin/pxcontrates -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxfqfilt -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxlog -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxlssq -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxlstr -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxmono -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxmrca -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxmrcacut -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxmrcaname -rwxr-xr-x root/root 329924 2024-11-02 15:22 ./usr/bin/pxnj -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxnw -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxpoly -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxrecode -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxrevcomp -rwxr-xr-x root/root 329924 2024-11-02 15:22 ./usr/bin/pxrls -rwxr-xr-x root/root 329924 2024-11-02 15:22 ./usr/bin/pxrlt -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxrmk -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxrms -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxrmt -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxrr -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxs2fa -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxs2nex -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxs2phy -rwxr-xr-x root/root 592116 2024-11-02 15:22 ./usr/bin/pxseqgen -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxssort -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxsstat -rwxr-xr-x root/root 592116 2024-11-02 15:22 ./usr/bin/pxstrec -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxsw -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxt2new -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxt2nex -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxtcol -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxtcomb -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxtgen -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxtlate -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxtrt -rwxr-xr-x root/root 198852 2024-11-02 15:22 ./usr/bin/pxtscale -rwxr-xr-x root/root 329924 2024-11-02 15:22 ./usr/bin/pxupgma -rwxr-xr-x root/root 264388 2024-11-02 15:22 ./usr/bin/pxvcf2fa drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/ drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/doc-base/ -rw-r--r-- root/root 1153 2024-11-02 15:22 ./usr/share/doc-base/phyx.phyx drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/doc/phyx/ -rw-r--r-- root/root 114860 2024-10-21 20:16 ./usr/share/doc/phyx/Phyxed_Manual.pdf -rw-r--r-- root/root 278 2024-11-02 15:22 ./usr/share/doc/phyx/README.test -rw-r--r-- root/root 1684 2024-11-02 15:22 ./usr/share/doc/phyx/changelog.Debian.gz -rw-r--r-- root/root 996 2024-11-02 15:22 ./usr/share/doc/phyx/copyright drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/doc/phyx/examples/ drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/manuscript_example/ -rw-r--r-- root/root 18072 2024-10-21 20:16 ./usr/share/doc/phyx/examples/manuscript_example/test.fa -rw-r--r-- root/root 18072 2024-10-21 20:16 ./usr/share/doc/phyx/examples/manuscript_example/test0.fa -rw-r--r-- root/root 18072 2024-10-21 20:16 ./usr/share/doc/phyx/examples/manuscript_example/test1.fa -rw-r--r-- root/root 18072 2024-10-21 20:16 ./usr/share/doc/phyx/examples/manuscript_example/test2.fa -rw-r--r-- root/root 18072 2024-10-21 20:16 ./usr/share/doc/phyx/examples/manuscript_example/test3.fa -rw-r--r-- root/root 18072 2024-10-21 20:16 ./usr/share/doc/phyx/examples/manuscript_example/test4.fa drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxaa2cdn_example/ -rw-r--r-- root/root 16338 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxaa2cdn_example/ND6_aa.fa -rw-r--r-- root/root 37623 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxaa2cdn_example/ND6_nuc.fa drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxbdfit_example/ -rw-r--r-- root/root 3059 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxbdfit_example/bd.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxboot_example/ -rw-r--r-- root/root 754 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxboot_example/Alignment -rw-r--r-- root/root 75 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxboot_example/parts drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxbp_example/ -rw-r--r-- root/root 282 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxbp_example/Tree.tre -rw-r--r-- root/root 142 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxbp_example/bp_output drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxbpseq_example/ -rw-r--r-- root/root 10051 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxbpseq_example/Sequences.fa -rw-r--r-- root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxbpseq_example/out -rw-r--r-- root/root 282 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxbpseq_example/ultra_100.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxcat_example/ -rw-r--r-- root/root 128 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxcat_example/Concat_Sequence1.fas -rw-r--r-- root/root 135 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxcat_example/Concat_Sequence1.phy -rw-r--r-- root/root 233 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxcat_example/Concat_Sequence2.fa -rw-r--r-- root/root 238 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxcat_example/Concat_Sequence2.phy drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxclsq_example/ -rw-r--r-- root/root 754 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxclsq_example/Alignment drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxconsq_example/ -rw-r--r-- root/root 754 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxconsq_example/Alignment drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxcontrates_example/ -rw-r--r-- root/root 139 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxcontrates_example/contrates_file.txt -rw-r--r-- root/root 282 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxcontrates_example/contrates_tree.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxfqfilt_example/ -rw-r--r-- root/root 659040 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxfqfilt_example/fqfilt_test.fastq drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxlog_example/ -rw-r--r-- root/root 341015 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxlog_example/run1.trees -rw-r--r-- root/root 509741 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxlog_example/run2.trees drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxlssq_example/ -rw-r--r-- root/root 754 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxlssq_example/Alignment drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxlstr_example/ -rw-r--r-- root/root 3059 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxlstr_example/Tree.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrca_example/ -rw-r--r-- root/root 73 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrca_example/mrca.txt -rw-r--r-- root/root 3059 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrca_example/mrca_test.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrcacut_example/ -rw-r--r-- root/root 73 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrcacut_example/mrca.txt -rw-r--r-- root/root 3059 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrcacut_example/mrca_test.tre -rw-r--r-- root/root 3058 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrcacut_example/out.txt drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrcaname_example/ -rw-r--r-- root/root 73 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrcaname_example/mrca.txt -rw-r--r-- root/root 3059 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrcaname_example/mrca_test.tre -rw-r--r-- root/root 5053 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxmrcaname_example/named_mrca.txt drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxnj_example/ -rw-r--r-- root/root 51785 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxnj_example/Alignment.aln drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxnw_examples/ -rw-r--r-- root/root 51785 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxnw_examples/Alignment.aln drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrecode_example/ -rw-r--r-- root/root 12418 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrecode_example/Nucleotide.fa drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrevcomp_example/ -rw-r--r-- root/root 12418 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrevcomp_example/Nucleotide.fa drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrls_example/ -rw-r--r-- root/root 90 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrls_example/newnames.txt -rw-r--r-- root/root 36 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrls_example/oldnames.txt -rw-r--r-- root/root 144 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrls_example/test.fa drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrlt_example/ -rw-r--r-- root/root 62 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrlt_example/kingdoms.newnames.txt -rw-r--r-- root/root 152 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrlt_example/kingdoms.oldnames.txt -rw-r--r-- root/root 310 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrlt_example/kingdoms.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrmk_example/ -rw-r--r-- root/root 314 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrmk_example/knuckle_tree.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrms_example/ -rw-r--r-- root/root 12418 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrms_example/Nucleotide.fa -rw-r--r-- root/root 18 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrms_example/taxa_to_delete.txt drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrmt_example/ -rw-r--r-- root/root 282 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrmt_example/rmt_test.tre -rw-r--r-- root/root 9 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrmt_example/taxa_to_delete.txt drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrr_example/ -rw-r--r-- root/root 463 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrr_example/out.tre -rw-r--r-- root/root 282 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxrr_example/rr_test.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxs2fa_pxs2phy_pxs2nex_example/ -rw-r--r-- root/root 52697 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxs2fa_pxs2phy_pxs2nex_example/Alignment drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxseqgen_example/ -rw-r--r-- root/root 7036 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxseqgen_example/goo.fa -rw-r--r-- root/root 282 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxseqgen_example/seqgen_test.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxssort_example/ -rw-r--r-- root/root 108 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxssort_example/Codon.fa drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxsstat_example/ -rw-r--r-- root/root 67 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxsstat_example/Bollback_2002_MBE.fa drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxstrec_example/ -rw-r--r-- root/root 390 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxstrec_example/config_stmap -rw-r--r-- root/root 503 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxstrec_example/out -rw-r--r-- root/root 137 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxstrec_example/test.data.narrow -rw-r--r-- root/root 174 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxstrec_example/test.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxsw_example/ -rw-r--r-- root/root 51027 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxsw_example/Alignment.fa drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxt2new_example/ -rw-r--r-- root/root 88 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxt2new_example/Tree.nex drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxtlate_example/ -rw-r--r-- root/root 93 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxtlate_example/Sequence.fa drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxtrt_example/ -rw-r--r-- root/root 85 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxtrt_example/taxa_to_retain.txt -rw-r--r-- root/root 4822 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxtrt_example/yule_100taxa.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxtscale_example/ -rw-r--r-- root/root 282 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxtscale_example/ultra.tre drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxupgma_example/ -rw-r--r-- root/root 51785 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxupgma_example/drosophila.aln drwxr-xr-x root/root 0 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxvcf2fa_example/ -rw-r--r-- root/root 4990 2024-10-21 20:16 ./usr/share/doc/phyx/examples/pxvcf2fa_example/vcf_file -rw-r--r-- root/root 1246 2024-11-02 15:22 ./usr/share/doc/phyx/run-unit-test.gz drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 192 2024-11-02 15:22 ./usr/share/lintian/overrides/phyx drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/man/ drwxr-xr-x root/root 0 2024-11-02 15:22 ./usr/share/man/man1/ -rw-r--r-- root/root 788 2024-11-02 15:22 ./usr/share/man/man1/pxaa2cdn.1.gz -rw-r--r-- root/root 703 2024-11-02 15:22 ./usr/share/man/man1/pxbdfit.1.gz -rw-r--r-- root/root 817 2024-11-02 15:22 ./usr/share/man/man1/pxbdsim.1.gz -rw-r--r-- root/root 805 2024-11-02 15:22 ./usr/share/man/man1/pxboot.1.gz -rw-r--r-- root/root 942 2024-11-02 15:22 ./usr/share/man/man1/pxbp.1.gz -rw-r--r-- root/root 923 2024-11-02 15:22 ./usr/share/man/man1/pxcat.1.gz -rw-r--r-- root/root 1062 2024-11-02 15:22 ./usr/share/man/man1/pxclsq.1.gz -rw-r--r-- root/root 815 2024-11-02 15:22 ./usr/share/man/man1/pxcltr.1.gz -rw-r--r-- root/root 764 2024-11-02 15:22 ./usr/share/man/man1/pxcolt.1.gz -rw-r--r-- root/root 692 2024-11-02 15:22 ./usr/share/man/man1/pxcomp.1.gz -rw-r--r-- root/root 679 2024-11-02 15:22 ./usr/share/man/man1/pxconsq.1.gz -rw-r--r-- root/root 729 2024-11-02 15:22 ./usr/share/man/man1/pxcontrates.1.gz -rw-r--r-- root/root 674 2024-11-02 15:22 ./usr/share/man/man1/pxfqfilt.1.gz -rw-r--r-- root/root 1005 2024-11-02 15:22 ./usr/share/man/man1/pxlog.1.gz -rw-r--r-- root/root 928 2024-11-02 15:22 ./usr/share/man/man1/pxlssq.1.gz -rw-r--r-- root/root 860 2024-11-02 15:22 ./usr/share/man/man1/pxlstr.1.gz -rw-r--r-- root/root 772 2024-11-02 15:22 ./usr/share/man/man1/pxmono.1.gz -rw-r--r-- root/root 744 2024-11-02 15:22 ./usr/share/man/man1/pxmrca.1.gz -rw-r--r-- root/root 757 2024-11-02 15:22 ./usr/share/man/man1/pxmrcacut.1.gz -rw-r--r-- root/root 782 2024-11-02 15:22 ./usr/share/man/man1/pxmrcaname.1.gz -rw-r--r-- root/root 700 2024-11-02 15:22 ./usr/share/man/man1/pxnj.1.gz -rw-r--r-- root/root 883 2024-11-02 15:22 ./usr/share/man/man1/pxnw.1.gz -rw-r--r-- root/root 692 2024-11-02 15:22 ./usr/share/man/man1/pxpoly.1.gz -rw-r--r-- root/root 769 2024-11-02 15:22 ./usr/share/man/man1/pxrecode.1.gz -rw-r--r-- root/root 820 2024-11-02 15:22 ./usr/share/man/man1/pxrevcomp.1.gz -rw-r--r-- root/root 883 2024-11-02 15:22 ./usr/share/man/man1/pxrls.1.gz -rw-r--r-- root/root 874 2024-11-02 15:22 ./usr/share/man/man1/pxrlt.1.gz -rw-r--r-- root/root 688 2024-11-02 15:22 ./usr/share/man/man1/pxrmk.1.gz -rw-r--r-- root/root 818 2024-11-02 15:22 ./usr/share/man/man1/pxrms.1.gz -rw-r--r-- root/root 833 2024-11-02 15:22 ./usr/share/man/man1/pxrmt.1.gz -rw-r--r-- root/root 816 2024-11-02 15:22 ./usr/share/man/man1/pxrr.1.gz -rw-r--r-- root/root 675 2024-11-02 15:22 ./usr/share/man/man1/pxs2fa.1.gz -rw-r--r-- root/root 667 2024-11-02 15:22 ./usr/share/man/man1/pxs2nex.1.gz -rw-r--r-- root/root 667 2024-11-02 15:22 ./usr/share/man/man1/pxs2phy.1.gz -rw-r--r-- root/root 1215 2024-11-02 15:22 ./usr/share/man/man1/pxseqgen.1.gz -rw-r--r-- root/root 698 2024-11-02 15:22 ./usr/share/man/man1/pxssort.1.gz -rw-r--r-- root/root 700 2024-11-02 15:22 ./usr/share/man/man1/pxsstat.1.gz -rw-r--r-- root/root 855 2024-11-02 15:22 ./usr/share/man/man1/pxstrec.1.gz -rw-r--r-- root/root 879 2024-11-02 15:22 ./usr/share/man/man1/pxsw.1.gz -rw-r--r-- root/root 647 2024-11-02 15:22 ./usr/share/man/man1/pxt2new.1.gz -rw-r--r-- root/root 660 2024-11-02 15:22 ./usr/share/man/man1/pxt2nex.1.gz -rw-r--r-- root/root 753 2024-11-02 15:22 ./usr/share/man/man1/pxtcol.1.gz -rw-r--r-- root/root 669 2024-11-02 15:22 ./usr/share/man/man1/pxtcomb.1.gz -rw-r--r-- root/root 737 2024-11-02 15:22 ./usr/share/man/man1/pxtgen.1.gz -rw-r--r-- root/root 801 2024-11-02 15:22 ./usr/share/man/man1/pxtlate.1.gz -rw-r--r-- root/root 789 2024-11-02 15:22 ./usr/share/man/man1/pxtrt.1.gz -rw-r--r-- root/root 738 2024-11-02 15:22 ./usr/share/man/man1/pxtscale.1.gz -rw-r--r-- root/root 678 2024-11-02 15:22 ./usr/share/man/man1/pxupgma.1.gz -rw-r--r-- root/root 698 2024-11-02 15:22 ./usr/share/man/man1/pxvcf2fa.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1374 B] Get:5 copy:/<>/apt_archive ./ Packages [1453 B] Fetched 3442 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip procps shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip procps sbuild-build-depends-lintian-dummy:armhf shared-mime-info t1utils ucf unzip 0 upgraded, 169 newly installed, 0 to remove and 0 not upgraded. Need to get 22.2 MB of archives. After this operation, 87.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get:4 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.0-2 [1490 kB] Get:5 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:7 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:8 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.3-1 [1515 kB] Get:10 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3 [24.7 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:20 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:30 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.14.1-1 [383 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 2.2.0-4+b2 [119 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.22-1 [63.1 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.0.5-1 [226 kB] Get:37 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.0.5-1 [538 kB] Get:38 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.67-1 [35.5 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:42 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.7-21 [129 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB] Get:45 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.7-21 [634 kB] Get:46 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.18.0-1 [3125 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.42 [68.3 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:57 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:62 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.68-1 [217 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:66 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:76 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-2 [32.6 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1+b1 [24.2 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:96 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:97 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-4 [25.6 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:105 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:112 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:113 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:116 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:124 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:125 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:126 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:127 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-3 [39.0 kB] Get:128 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:131 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:134 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:136 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b3 [42.3 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:149 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.48-2 [65.7 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.30-1+b1 [27.4 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B] Get:153 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:156 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-3 [20.1 kB] Get:158 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:160 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:162 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.903.0+ds-1 [35.4 kB] Get:164 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-3 [65.0 kB] Get:165 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:166 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:167 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:168 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:169 http://localhost:3142/debian unstable/main amd64 lintian all 2.122.0 [1063 kB] Preconfiguring packages ... Fetched 22.2 MB in 0s (129 MB/s) Selecting previously unselected package libproc2-0:amd64. (Reading database ... 21866 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.4-8_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.4-8_amd64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.5.0-2_amd64.deb ... Unpacking openssl (3.5.0-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../004-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. 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Setting up plzip (1.12-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libnpth0t64:amd64 (1.8-3) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libunicode-utf8-perl (0.62-3) ... Setting up libmouse-perl:amd64 (2.5.11-1+b1) ... Setting up libgpg-error0:amd64 (1.51-4) ... Setting up libdata-messagepack-perl (1.02-2) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:amd64 (4.39-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1+b1) ... Setting up unzip (6.0-29) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.903.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... Setting up liblzo2-2:amd64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libcom-err2:amd64 (1.47.2-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ... Setting up libglib2.0-0t64:amd64 (2.84.3-1) ... No schema files found: doing nothing. Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-4) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b3) ... Setting up t1utils (1.41-4) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up diffstat (1.67-1) ... Setting up libproc2-0:amd64 (2:4.0.4-8) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2+b1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:amd64 (0.28-1) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:amd64 (0.636-1+b3) ... Setting up libpath-tiny-perl (0.148-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.2-2) ... Setting up procps (2:4.0.4-8) ... Setting up gpgconf (2.4.7-21) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libstemmer0d:amd64 (2.2.0-4+b2) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.5.0-2) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:amd64 (2.2.7-2.1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.18.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libksba8:amd64 (1.6.7-2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxmlb2:amd64 (0.3.22-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-2) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.48-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0052) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1+b1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.4.7-21) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.68-1) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-1) ... Setting up libappstream5:amd64 (1.0.5-1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up appstream (1.0.5-1) ... ✔ Metadata cache was updated successfully. Setting up libmodule-runtime-perl (0.018-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.122.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 246 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 13 Job: phyx_1.3.2+ds-1 Lintian: pass Machine Architecture: amd64 Package: phyx Package-Time: 270 Source-Version: 1.3.2+ds-1 Space: n/a Status: successful Version: 1.3.2+ds-1 -------------------------------------------------------------------------------- Finished at 2025-06-18T20:27:45Z Build needed 00:04:30, no disk space