sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley
+==============================================================================+
| pirs 2.0.2+dfsg-12 (riscv64) Fri, 28 Mar 2025 17:10:41 +0000 |
+==============================================================================+
Package: pirs
Version: 2.0.2+dfsg-12
Source Version: 2.0.2+dfsg-12
Distribution: unstable
Machine Architecture: amd64
Host Architecture: riscv64
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-6d5eb675-7c2a-41f7-883d-ce347813a577' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pirs-5tcc9W/resolver-r0ijIp' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://localhost:3142/debian unstable InRelease [205 kB]
Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:4 http://localhost:3142/debian unstable/main Sources T-2025-03-28-1405.20-F-2025-03-28-0206.07.pdiff [53.7 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-28-1405.20-F-2025-03-28-0206.07.pdiff [59.1 kB]
Get:4 http://localhost:3142/debian unstable/main Sources T-2025-03-28-1405.20-F-2025-03-28-0206.07.pdiff [53.7 kB]
Get:6 http://localhost:3142/debian unstable/main riscv64 Packages [9734 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-03-28-1405.20-F-2025-03-28-0206.07.pdiff [59.1 kB]
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Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
apt apt-utils libapt-pkg7.0 libsystemd0 libudev1 login.defs passwd
7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 4912 kB of archives.
After this operation, 2048 B of additional disk space will be used.
Get:1 http://localhost:3142/debian unstable/main amd64 libsystemd0 amd64 257.4-5 [452 kB]
Get:2 http://localhost:3142/debian unstable/main amd64 libudev1 amd64 257.4-5 [150 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libapt-pkg7.0 amd64 2.9.35 [1112 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 apt amd64 2.9.35 [1449 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 apt-utils amd64 2.9.35 [335 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 login.defs all 1:4.17.3-3 [186 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.17.3-3 [1228 kB]
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Preparing to unpack .../libsystemd0_257.4-5_amd64.deb ...
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Preparing to unpack .../libapt-pkg7.0_2.9.35_amd64.deb ...
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Preparing to unpack .../archives/apt_2.9.35_amd64.deb ...
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Preparing to unpack .../apt-utils_2.9.35_amd64.deb ...
Unpacking apt-utils (2.9.35) over (2.9.34) ...
Preparing to unpack .../login.defs_1%3a4.17.3-3_all.deb ...
Unpacking login.defs (1:4.17.3-3) over (1:4.17.3-2) ...
Preparing to unpack .../passwd_1%3a4.17.3-3_amd64.deb ...
Unpacking passwd (1:4.17.3-3) over (1:4.17.3-2) ...
Setting up apt-utils (2.9.35) ...
Setting up login.defs (1:4.17.3-3) ...
Setting up passwd (1:4.17.3-3) ...
Processing triggers for libc-bin (2.41-6) ...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pirs' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pirs.git
Please use:
git clone https://salsa.debian.org/med-team/pirs.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6039 kB of source archives.
Get:1 http://localhost:3142/debian unstable/main pirs 2.0.2+dfsg-12 (dsc) [2123 B]
Get:2 http://localhost:3142/debian unstable/main pirs 2.0.2+dfsg-12 (tar) [6029 kB]
Get:3 http://localhost:3142/debian unstable/main pirs 2.0.2+dfsg-12 (diff) [8148 B]
Fetched 6039 kB in 1s (7008 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pirs-5tcc9W/pirs-2.0.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pirs-5tcc9W' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libboost-dev, zlib1g-dev, libgzstream-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64
Filtered Build-Depends: debhelper-compat (= 13), libboost-dev, zlib1g-dev, libgzstream-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [763 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [808 B]
Fetched 2180 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu
bsdextrautils cpp-14-riscv64-linux-gnu cpp-riscv64-linux-gnu
crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism
dwz fakeroot file g++-14-riscv64-linux-gnu g++-riscv64-linux-gnu
gcc-14-base:riscv64 gcc-14-cross-base gcc-14-riscv64-linux-gnu
gcc-14-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libasan8:riscv64
libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross
libboost-dev:riscv64 libboost1.83-dev:riscv64 libc6:riscv64
libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross
libcrypt-dev:riscv64 libcrypt1:riscv64 libdebhelper-perl libelf1t64
libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev:riscv64
libgcc-14-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross
libgomp1:riscv64 libgomp1-riscv64-cross libgzstream-dev:riscv64
libgzstream0:riscv64 libitm1:riscv64 libitm1-riscv64-cross liblsan0:riscv64
liblsan0-riscv64-cross libmagic-mgc libmagic1t64 libpipeline1
libstdc++-14-dev:riscv64 libstdc++-14-dev-riscv64-cross libstdc++6:riscv64
libstdc++6-riscv64-cross libtool libtsan2:riscv64 libtsan2-riscv64-cross
libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunistring5 libxml2
linux-libc-dev-riscv64-cross m4 man-db po-debconf sensible-utils
zlib1g:riscv64 zlib1g-dev:riscv64
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales
cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison
gdb-riscv64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
groff libboost-doc:riscv64 libboost1.83-doc:riscv64
libboost-atomic1.83-dev:riscv64 libboost-chrono1.83-dev:riscv64
libboost-container1.83-dev:riscv64 libboost-context1.83-dev:riscv64
libboost-contract1.83-dev:riscv64 libboost-coroutine1.83-dev:riscv64
libboost-date-time1.83-dev:riscv64 libboost-exception1.83-dev:riscv64
libboost-fiber1.83-dev:riscv64 libboost-filesystem1.83-dev:riscv64
libboost-graph-parallel1.83-dev:riscv64 libboost-graph1.83-dev:riscv64
libboost-iostreams1.83-dev:riscv64 libboost-json1.83-dev:riscv64
libboost-locale1.83-dev:riscv64 libboost-log1.83-dev:riscv64
libboost-math1.83-dev:riscv64 libboost-mpi-python1.83-dev:riscv64
libboost-mpi1.83-dev:riscv64 libboost-nowide1.83-dev:riscv64
libboost-numpy1.83-dev:riscv64 libboost-program-options1.83-dev:riscv64
libboost-python1.83-dev:riscv64 libboost-random1.83-dev:riscv64
libboost-regex1.83-dev:riscv64 libboost-serialization1.83-dev:riscv64
libboost-stacktrace1.83-dev:riscv64 libboost-system1.83-dev:riscv64
libboost-test1.83-dev:riscv64 libboost-thread1.83-dev:riscv64
libboost-timer1.83-dev:riscv64 libboost-type-erasure1.83-dev:riscv64
libboost-url1.83-dev:riscv64 libboost-wave1.83-dev:riscv64
libboost1.83-tools-dev:riscv64 libmpfrc++-dev:riscv64 libntl-dev:riscv64
glibc-doc:riscv64 libc-l10n:riscv64 locales:riscv64 libnss-nis:riscv64
libnss-nisplus:riscv64 manpages-dev:riscv64 libstdc++-14-doc:riscv64
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libidn2-0:riscv64 libarchive-cpio-perl libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu
bsdextrautils cpp-14-riscv64-linux-gnu cpp-riscv64-linux-gnu
crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism
dwz fakeroot file g++-14-riscv64-linux-gnu g++-riscv64-linux-gnu
gcc-14-base:riscv64 gcc-14-cross-base gcc-14-riscv64-linux-gnu
gcc-14-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libasan8:riscv64
libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross
libboost-dev:riscv64 libboost1.83-dev:riscv64 libc6:riscv64
libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross
libcrypt-dev:riscv64 libcrypt1:riscv64 libdebhelper-perl libelf1t64
libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev:riscv64
libgcc-14-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross
libgomp1:riscv64 libgomp1-riscv64-cross libgzstream-dev:riscv64
libgzstream0:riscv64 libitm1:riscv64 libitm1-riscv64-cross liblsan0:riscv64
liblsan0-riscv64-cross libmagic-mgc libmagic1t64 libpipeline1
libstdc++-14-dev:riscv64 libstdc++-14-dev-riscv64-cross libstdc++6:riscv64
libstdc++6-riscv64-cross libtool libtsan2:riscv64 libtsan2-riscv64-cross
libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunistring5 libxml2
linux-libc-dev-riscv64-cross m4 man-db po-debconf
sbuild-build-depends-main-dummy:riscv64 sensible-utils zlib1g:riscv64
zlib1g-dev:riscv64
0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
Need to get 126 MB of archives.
After this operation, 781 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B]
Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-3 [337 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-3 [109 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-3 [43.5 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 binutils-riscv64-linux-gnu amd64 2.44-3 [1428 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 gcc-14-riscv64-linux-gnu-base amd64 14.2.0-19cross1 [49.6 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 cpp-14-riscv64-linux-gnu amd64 14.2.0-19cross1 [13.3 MB]
Get:20 http://localhost:3142/debian unstable/main amd64 cpp-riscv64-linux-gnu amd64 4:14.2.0-1 [4848 B]
Get:21 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 libc6-riscv64-cross all 2.41-6cross2 [1169 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libgcc-s1-riscv64-cross all 14.2.0-19cross1 [56.8 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libgomp1-riscv64-cross all 14.2.0-19cross1 [128 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libitm1-riscv64-cross all 14.2.0-19cross1 [25.2 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libatomic1-riscv64-cross all 14.2.0-19cross1 [8316 B]
Get:27 http://localhost:3142/debian unstable/main amd64 libasan8-riscv64-cross all 14.2.0-19cross1 [2354 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 liblsan0-riscv64-cross all 14.2.0-19cross1 [1076 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libtsan2-riscv64-cross all 14.2.0-19cross1 [2230 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libstdc++6-riscv64-cross all 14.2.0-19cross1 [660 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libubsan1-riscv64-cross all 14.2.0-19cross1 [978 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-riscv64-cross all 14.2.0-19cross1 [5178 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 gcc-14-riscv64-linux-gnu amd64 14.2.0-19cross1 [25.7 MB]
Get:34 http://localhost:3142/debian unstable/main amd64 gcc-riscv64-linux-gnu amd64 4:14.2.0-1 [1444 B]
Get:35 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-riscv64-cross all 6.12.17-1cross2 [2339 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libc6-dev-riscv64-cross all 2.41-6cross2 [3123 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-riscv64-cross all 14.2.0-19cross1 [4940 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 g++-14-riscv64-linux-gnu amd64 14.2.0-19cross1 [14.3 MB]
Get:39 http://localhost:3142/debian unstable/main amd64 g++-riscv64-linux-gnu amd64 4:14.2.0-1 [1200 B]
Get:40 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-riscv64 all 12.12 [3544 B]
Get:41 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get:47 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.1-1 [29.6 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.1-1 [76.0 kB]
Get:57 http://localhost:3142/debian unstable/main riscv64 gcc-14-base riscv64 14.2.0-19 [49.4 kB]
Get:58 http://localhost:3142/debian unstable/main riscv64 libgcc-s1 riscv64 14.2.0-19 [56.8 kB]
Get:59 http://localhost:3142/debian unstable/main riscv64 libc6 riscv64 2.41-6 [2465 kB]
Get:60 http://localhost:3142/debian unstable/main riscv64 libasan8 riscv64 14.2.0-19 [2365 kB]
Get:61 http://localhost:3142/debian unstable/main riscv64 libatomic1 riscv64 14.2.0-19 [8672 B]
Get:62 http://localhost:3142/debian unstable/main riscv64 libgomp1 riscv64 14.2.0-19 [130 kB]
Get:63 http://localhost:3142/debian unstable/main riscv64 libitm1 riscv64 14.2.0-19 [25.8 kB]
Get:64 http://localhost:3142/debian unstable/main riscv64 liblsan0 riscv64 14.2.0-19 [1078 kB]
Get:65 http://localhost:3142/debian unstable/main riscv64 libtsan2 riscv64 14.2.0-19 [2241 kB]
Get:66 http://localhost:3142/debian unstable/main riscv64 libstdc++6 riscv64 14.2.0-19 [707 kB]
Get:67 http://localhost:3142/debian unstable/main riscv64 libubsan1 riscv64 14.2.0-19 [979 kB]
Get:68 http://localhost:3142/debian unstable/main riscv64 libgcc-14-dev riscv64 14.2.0-19 [5190 kB]
Get:69 http://localhost:3142/debian unstable/main riscv64 libcrypt1 riscv64 1:4.4.38-1 [106 kB]
Get:70 http://localhost:3142/debian unstable/main riscv64 libcrypt-dev riscv64 1:4.4.38-1 [221 kB]
Get:71 http://localhost:3142/debian unstable/main riscv64 libc6-dev riscv64 2.41-6 [3127 kB]
Get:72 http://localhost:3142/debian unstable/main riscv64 libstdc++-14-dev riscv64 14.2.0-19 [5276 kB]
Get:73 http://localhost:3142/debian unstable/main riscv64 libboost1.83-dev riscv64 1.83.0-4.2 [10.6 MB]
Get:74 http://localhost:3142/debian unstable/main riscv64 libboost-dev riscv64 1.83.0.2+b2 [3832 B]
Get:75 http://localhost:3142/debian unstable/main riscv64 libgzstream0 riscv64 1.5+git20171107.9a20658-3 [6896 B]
Get:76 http://localhost:3142/debian unstable/main riscv64 libgzstream-dev riscv64 1.5+git20171107.9a20658-3 [10.3 kB]
Get:77 http://localhost:3142/debian unstable/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB]
Get:78 http://localhost:3142/debian unstable/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB]
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Setting up libcrypt1:riscv64 (1:4.4.38-1) ...
Setting up libgomp1:riscv64 (14.2.0-19) ...
Setting up libatomic1:riscv64 (14.2.0-19) ...
Setting up libgzstream0:riscv64 (1.5+git20171107.9a20658-3) ...
Setting up libubsan1:riscv64 (14.2.0-19) ...
Setting up libcrypt-dev:riscv64 (1:4.4.38-1) ...
Setting up libc6-dev:riscv64 (2.41-6) ...
Setting up libgcc-14-dev:riscv64 (14.2.0-19) ...
Setting up libstdc++-14-dev:riscv64 (14.2.0-19) ...
Setting up libboost1.83-dev:riscv64 (1.83.0-4.2) ...
Setting up libgzstream-dev:riscv64 (1.5+git20171107.9a20658-3) ...
Setting up zlib1g-dev:riscv64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libboost-dev:riscv64 (1.83.0.2+b2) ...
Setting up sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ...
Processing triggers for libc-bin (2.41-6) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (riscv64 included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) amd64 (x86_64)
Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-6 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-riscv64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-riscv64-cross_14.2.0-19cross1 linux-libc-dev_6.12.20-1
Package versions: apt_2.9.35 apt-utils_2.9.35 autoconf_2.72-3 automake_1:1.17-4 autopoint_0.23.1-1 autotools-dev_20240727.1 base-files_13.7 base-passwd_3.6.7 bash_5.2.37-1.1+b1 binutils_2.44-3 binutils-common_2.44-3 binutils-riscv64-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-riscv64-linux-gnu_14.2.0-19cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-riscv64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-riscv64_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-3 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b1 fakeroot_1.37.1.1-1 file_1:5.46-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-riscv64-linux-gnu_14.2.0-19cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-riscv64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-riscv64-linux-gnu_14.2.0-19cross1 gcc-14-riscv64-linux-gnu-base_14.2.0-19cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-riscv64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_2.9.35 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-riscv64-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-riscv64-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.40.4-5 libboost-dev_1.83.0.2+b2 libboost1.83-dev_1.83.0-4.2 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-6 libc-dev-bin_2.41-6 libc6_2.41-6 libc6-dev_2.41-6 libc6-dev-riscv64-cross_2.41-6cross2 libc6-riscv64-cross_2.41-6cross2 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-4 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdpkg-perl_1.22.18 libelf1t64_0.192-4 libfakeroot_1.37.1.1-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-19 libgcc-14-dev-riscv64-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-riscv64-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgomp1_14.2.0-19 libgomp1-riscv64-cross_14.2.0-19cross1 libgprofng0_2.44-3 libgzstream-dev_1.5+git20171107.9a20658-3 libgzstream0_1.5+git20171107.9a20658-3 libhogweed6t64_3.10.1-1 libhwasan0_14.2.0-19 libisl23_0.27-1 libitm1_14.2.0-19 libitm1-riscv64-cross_14.2.0-19cross1 libjansson4_2.14-2+b3 liblsan0_14.2.0-19 liblsan0-riscv64-cross_14.2.0-19cross1 liblz4-1_1.10.0-4 liblzma5_5.6.4-1 libmagic-mgc_1:5.46-3 libmagic1t64_1:5.46-3 libmd0_1.1.0-2+b1 libmount1_2.40.4-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libnettle8t64_3.10.1-1 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libquadmath0_14.2.0-19 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.40.4-5 libssl3t64_3.4.1-1 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-riscv64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-riscv64-cross_14.2.0-19cross1 libsystemd0_257.4-5 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libtsan2-riscv64-cross_14.2.0-19cross1 libubsan1_14.2.0-19 libubsan1-riscv64-cross_14.2.0-19cross1 libuchardet0_0.0.8-1+b2 libudev1_257.4-5 libunistring5_1.3-2 libuuid1_2.40.4-5 libxml2_2.12.7+dfsg+really2.9.14-0.4 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.20-1 linux-libc-dev-riscv64-cross_6.12.17-1cross2 login_1:4.16.0-2+really2.40.4-5 login.defs_1:4.17.3-3 m4_1.4.19-7 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 mount_2.40.4-5 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.4.1-1 passwd_1:4.17.3-3 patch_2.7.6-7 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sqv_1.2.1-6+b1 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-1 util-linux_2.40.4-5 xz-utils_5.6.4-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pirs
Binary: pirs, pirs-profiles, pirs-examples
Architecture: any all
Version: 2.0.2+dfsg-12
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/galaxy001/pirs
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/pirs
Vcs-Git: https://salsa.debian.org/med-team/pirs.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), libboost-dev, zlib1g-dev, libgzstream-dev
Package-List:
pirs deb science optional arch=any
pirs-examples deb science optional arch=all
pirs-profiles deb science optional arch=all
Checksums-Sha1:
f7ad7b1afb04ddb941cf2aa00a368ee61883fcdd 6029204 pirs_2.0.2+dfsg.orig.tar.xz
8fbede7a6e6614848e23962eb89cf3f547400ed7 8148 pirs_2.0.2+dfsg-12.debian.tar.xz
Checksums-Sha256:
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f11d153d48e2830a72586a92afc6c21f9a51136ca800590055d3fde53aeb45d0 8148 pirs_2.0.2+dfsg-12.debian.tar.xz
Files:
1ee1373ad8b358f61adc8429645f946d 6029204 pirs_2.0.2+dfsg.orig.tar.xz
09e4b580bb20a62ce8f71af98b38815a 8148 pirs_2.0.2+dfsg-12.debian.tar.xz
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dpkg-source: warning: cannot verify inline signature for ./pirs_2.0.2+dfsg-12.dsc: unsupported subcommand
dpkg-source: info: extracting pirs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pirs_2.0.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking pirs_2.0.2+dfsg-12.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libgzstream.patch
dpkg-source: info: applying Fix-spelling-of-sse2-option.patch
dpkg-source: info: applying do_not_seek_for_arial.ttf.patch
dpkg-source: info: applying Remove-mtune-compiler-flag.patch
dpkg-source: info: applying gcc-12.patch
dpkg-source: info: applying typos.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.riscv64
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
OLDPWD=/home/crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SBUILD_CONFIG=/tmp/tmp.SvcKbnfbON/sbuild.conf
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-6d5eb675-7c2a-41f7-883d-ce347813a577
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa
XDG_SESSION_CLASS=user
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -ariscv64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package pirs
dpkg-buildpackage: info: source version 2.0.2+dfsg-12
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-architecture: warning: specified GNU system type riscv64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture riscv64
debian/rules clean
dh clean --sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
cd src && ./srclean.sh >/dev/null 2>/dev/null || true
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--sourcedirectory=src
dh_clean -O--sourcedirectory=src
debian/rules binary-arch
dh binary-arch --sourcedirectory=src
dh_update_autotools_config -a -O--sourcedirectory=src
debian/rules override_dh_autoreconf
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && \
mv INSTALL INSTALL.save && \
autoreconf --install && \
mv INSTALL.save INSTALL && \
cd /<<PKGBUILDDIR>>
configure.ac:5: warning: The macro 'AC_CONFIG_HEADER' is obsolete.
configure.ac:5: You should run autoupdate.
./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
configure.ac:5: the top level
configure.ac:71: warning: AC_OUTPUT should be used without arguments.
configure.ac:71: You should run autoupdate.
configure.ac:9: installing './compile'
configure.ac:3: installing './install-sh'
configure.ac:3: installing './missing'
Makefile.am: installing './INSTALL'
pirs/Makefile.am:28: warning: source file 'SFMT-src-1.4/SFMT.c' is in a subdirectory,
pirs/Makefile.am:28: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least one source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However, this
automake: behavior may change in a future Automake major version, with object
automake: files being placed in the same subdirectory as the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibility.
pirs/Makefile.am: installing './depcomp'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-pirs-diploid --disable-sse2
cd src && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=riscv64-linux-gnu --enable-pirs-diploid --disable-sse2
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for riscv64-linux-gnu-strip... riscv64-linux-gnu-strip
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking for riscv64-linux-gnu-g++... riscv64-linux-gnu-g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether riscv64-linux-gnu-g++ accepts -g... yes
checking for riscv64-linux-gnu-g++ option to enable C++11 features... none needed
checking whether make supports the include directive... yes (GNU style)
checking dependency style of riscv64-linux-gnu-g++... none
checking for riscv64-linux-gnu-gcc... riscv64-linux-gnu-gcc
checking whether the compiler supports GNU C... yes
checking whether riscv64-linux-gnu-gcc accepts -g... yes
checking for riscv64-linux-gnu-gcc option to enable C11 features... none needed
checking whether riscv64-linux-gnu-gcc understands -c and -o together... yes
checking dependency style of riscv64-linux-gnu-gcc... none
checking for gzopen in -lz... yes
checking Whether to include support for 'pirs diploid' command... yes
checking Whether to include support for 'pirs simulate' command... yes
checking Whether to include support for multiple threads... yes
checking for riscv64-linux-gnu-g++ option to support OpenMP... -fopenmp
checking Whether to include support for SSE2 instructions... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating pirs/Makefile
config.status: creating config.h
config.status: executing depfiles commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
cd src && make -j1
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make all-recursive
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
Making all in pirs
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/pirs'
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o InputStream.o InputStream.cpp
In file included from InputStream.cpp:1:
InputStream.h: In constructor ‘InputStream::InputStream()’:
InputStream.h:50:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor ‘InputStream::InputStream(const char*)’:
InputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o OutputStream.o OutputStream.cpp
In file included from OutputStream.cpp:1:
OutputStream.h: In constructor ‘OutputStream::OutputStream()’:
OutputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’:
OutputStream.h:58:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp
main.cpp:18:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
18 | "Compile Date: " __DATE__ " time: " __TIME__ "\n"
| ^~~~~~~~
main.cpp:18:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
18 | "Compile Date: " __DATE__ " time: " __TIME__ "\n"
| ^~~~~~~~
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.o util.cpp
In file included from util.cpp:18:
InputStream.h: In constructor ‘InputStream::InputStream()’:
InputStream.h:50:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor ‘InputStream::InputStream(const char*)’:
InputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937-64.o mt19937-64.cpp
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_diploid.o pirs_diploid.cpp
pirs_diploid.cpp:640:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
640 | info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:640:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
640 | info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:640:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
640 | info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:642:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
642 | info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:642:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
642 | info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:642:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
642 | info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n",
| ^
pirs_diploid.cpp:644:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
644 | info(" %#"PRIx64"]\n", het_type_tab[6]);
| ^
In file included from pirs_diploid.cpp:12:
InputStream.h: In constructor ‘InputStream::InputStream()’:
InputStream.h:50:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor ‘InputStream::InputStream(const char*)’:
InputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from pirs_diploid.cpp:13:
OutputStream.h: In constructor ‘OutputStream::OutputStream()’:
OutputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’:
OutputStream.h:58:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaseCallingProfile.o BaseCallingProfile.cpp
In file included from SimulationParameters.h:6,
from BaseCallingProfile.h:7,
from BaseCallingProfile.cpp:5:
InputStream.h: In constructor ‘InputStream::InputStream()’:
InputStream.h:50:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor ‘InputStream::InputStream(const char*)’:
InputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from SimulationParameters.h:7:
OutputStream.h: In constructor ‘OutputStream::OutputStream()’:
OutputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’:
OutputStream.h:58:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GCBiasProfile.o GCBiasProfile.cpp
In file included from SimulationParameters.h:6,
from GCBiasProfile.h:5,
from GCBiasProfile.cpp:5:
InputStream.h: In constructor ‘InputStream::InputStream()’:
InputStream.h:50:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor ‘InputStream::InputStream(const char*)’:
InputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from SimulationParameters.h:7:
OutputStream.h: In constructor ‘OutputStream::OutputStream()’:
OutputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’:
OutputStream.h:58:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IndelProfile.o IndelProfile.cpp
In file included from SimulationParameters.h:6,
from IndelProfile.cpp:2:
InputStream.h: In constructor ‘InputStream::InputStream()’:
InputStream.h:50:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor ‘InputStream::InputStream(const char*)’:
InputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from SimulationParameters.h:7:
OutputStream.h: In constructor ‘OutputStream::OutputStream()’:
OutputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’:
OutputStream.h:58:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MaskQvalsByEamss.o MaskQvalsByEamss.cpp
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Profile.o Profile.cpp
In file included from Profile.cpp:2:
InputStream.h: In constructor ‘InputStream::InputStream()’:
InputStream.h:50:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor ‘InputStream::InputStream(const char*)’:
InputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_simulate.o pirs_simulate.cpp
pirs_simulate.cpp:168:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
168 | " "DEFAULT_BASE_CALLING_PROFILE"\n"
| ^
pirs_simulate.cpp:174:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
174 | " "DEFAULT_INDEL_PROFILE"\n"
| ^
pirs_simulate.cpp:180:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
180 | " "DEFAULT_GC_BIAS_PROFILE_100",\n"
| ^
pirs_simulate.cpp:181:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
181 | " "DEFAULT_GC_BIAS_PROFILE_150",\n"
| ^
pirs_simulate.cpp:182:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
182 | " "DEFAULT_GC_BIAS_PROFILE_200",\n"
| ^
pirs_simulate.cpp:672:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
672 | out_file.printf("%cread_%d_%"PRIu64"/%d\n",
| ^
pirs_simulate.cpp:700:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
700 | info_log_file.printf("read_%d_%"PRIu64"/%d\t%s\t%s\t%zu\t%c\t%d\t%d\t",
| ^
pirs_simulate.cpp:1235:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1235 | info("Simulated %"PRIu64" of %"PRIu64" read pairs\n",
| ^
pirs_simulate.cpp:1235:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1235 | info("Simulated %"PRIu64" of %"PRIu64" read pairs\n",
| ^
pirs_simulate.cpp:1540:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1540 | insert_log.printf("%d\t%"PRIu64"\n", it->first, it->second);
| ^
pirs_simulate.cpp:1557:9: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1557 | "# The total number of read pairs that were simulated was %"PRIu64".\n"
| ^
pirs_simulate.cpp:1574:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1574 | error_log.printf("%d\t%"PRIu64"\t%g\n",
| ^
pirs_simulate.cpp:1579:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1579 | error_log.printf("total\t%"PRIu64"\t%g\n",
| ^
pirs_simulate.cpp:1685:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1685 | log_parameter(info_log, "Random seed: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1713:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1713 | info("Program: "PROGRAM "\n");
| ^
pirs_simulate.cpp:1714:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1714 | info("Version: "VERSION "\n");
| ^
pirs_simulate.cpp:1715:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1715 | info("Author: "AUTHOR "\n");
| ^
pirs_simulate.cpp:1716:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1716 | info("Contact: "CONTACT "\n");
| ^
pirs_simulate.cpp:1717:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1717 | info("Compile Date: "__DATE__ " time: " __TIME__ "\n");
| ^
pirs_simulate.cpp:1717:32: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
1717 | info("Compile Date: "__DATE__ " time: " __TIME__ "\n");
| ^~~~~~~~
pirs_simulate.cpp:1717:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
1717 | info("Compile Date: "__DATE__ " time: " __TIME__ "\n");
| ^~~~~~~~
pirs_simulate.cpp:1764:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1764 | info("Bases in reference sequences: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1766:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1766 | info("Read pairs simulated: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1768:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1768 | info("Bases in reads: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1773:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1773 | info("Substitution error count: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1777:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1777 | info("Insertion count: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1779:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1779 | info("Deletion count: %"PRIu64"\n",
| ^
pirs_simulate.cpp:1795:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1795 | info("Bases masked by EAMSS algorithm: %"PRIu64"\n", counters.masked_bases);
| ^
pirs_simulate.cpp:1856:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
1856 | info("Note: A random seed (%"PRIu64") was specified on the command line.\n",
| ^
In file included from SimulationParameters.h:6,
from BaseCallingProfile.h:7,
from pirs_simulate.cpp:14:
InputStream.h: In constructor ‘InputStream::InputStream()’:
InputStream.h:50:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
50 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
InputStream.h: In constructor ‘InputStream::InputStream(const char*)’:
InputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
InputStream.h:25:7: note: ‘class InputStream’ declared here
25 | class InputStream {
| ^~~~~~~~~~~
In file included from SimulationParameters.h:7:
OutputStream.h: In constructor ‘OutputStream::OutputStream()’:
OutputStream.h:54:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
54 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’:
OutputStream.h:58:23: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess]
58 | memset(this, 0, sizeof(*this));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
OutputStream.h:33:7: note: ‘class OutputStream’ declared here
33 | class OutputStream {
| ^~~~~~~~~~~~
riscv64-linux-gnu-g++ -Wall -Wextra -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pirs InputStream.o OutputStream.o main.o util.o mt19937-64.o pirs_diploid.o BaseCallingProfile.o GCBiasProfile.o IndelProfile.o MaskQvalsByEamss.o Profile.o pirs_simulate.o -lz -lz
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/pirs'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_auto_build --sourcedirectory=src/stator/gcContCvgBias -- CC='$(CXX)'
cd src/stator/gcContCvgBias && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=riscv64-linux-gnu-pkg-config CXX=riscv64-linux-gnu-g\+\+ CC=riscv64-linux-gnu-gcc CC=\$\(CXX\)
make[2]: Entering directory '/<<PKGBUILDDIR>>/src/stator/gcContCvgBias'
riscv64-linux-gnu-g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -pedantic -Wfloat-equal self_util.cpp self_util.h
self_util.cpp: In function ‘char toUpper(const char&)’:
self_util.cpp:182:1: warning: control reaches end of non-void function [-Wreturn-type]
182 | }
| ^
self_util.cpp: In function ‘char toLower(const char&)’:
self_util.cpp:190:1: warning: control reaches end of non-void function [-Wreturn-type]
190 | }
| ^
riscv64-linux-gnu-g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -pedantic -Wfloat-equal main.cpp
riscv64-linux-gnu-g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -pedantic -Wfloat-equal stat_soap_coverage.h stat_soap_coverage.cpp
In file included from /usr/include/boost/config/header_deprecated.hpp:18,
from /usr/include/boost/progress.hpp:26,
from stat_soap_coverage.cpp:8:
/usr/include/boost/progress.hpp:27:1: note: ‘#pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp> instead.’
27 | BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp>" )
| ^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead.’
25 | BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp>" )
| ^~~~~~~~~~~~~~~~~~~~~~~
riscv64-linux-gnu-g++ -o gc_coverage_bias -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_TIMER_ENABLE_DEPRECATED -pedantic -Wfloat-equal self_util.o main.o stat_soap_coverage.o -Wl,-z,relro -Wl,-z,now -lgzstream -lz
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src/stator/gcContCvgBias'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install --sourcedirectory=src/stator/gcContCvgBias
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mkdir -p debian/pirs/usr/lib/pirs
find src -name "*.pl" -exec cp -a \{\} debian/pirs/usr/lib/pirs \;
rm -f debian/pirs/usr/lib/pirs/autobam.pl
# Fix perl interpreter path
for pl in `grep -Rl '#![/usr]*/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#![/usr]*/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_installdocs-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
cp -a src/stator/readme.txt debian/pirs/usr/share/doc/pirs/strator_readme.txt
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs NEWS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installsystemduser -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
debian/rules override_dh_link-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link -a
for pl in debian/pirs/usr/lib/pirs/*.pl ; do \
plname=`basename ${pl}` ; \
ln -s ../lib/pirs/${plname} debian/pirs/usr/bin/`basename ${plname} .pl` ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_strip_nondeterminism -a -O--sourcedirectory=src
dh_compress -a -O--sourcedirectory=src
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian/*/usr/lib -name "*.pl" -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--sourcedirectory=src
dh_dwz -a -O--sourcedirectory=src
dwz: debian/pirs/usr/bin/gc_coverage_bias: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: warning: Common issues include no debug information at all (missing -g) and
dh_dwz: warning: compressed debug information (#931891).
dh_strip -a -O--sourcedirectory=src
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: package pirs: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package pirs: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'pirs' in '../pirs_2.0.2+dfsg-12_riscv64.deb'.
dpkg-deb: building package 'pirs-dbgsym' in '../pirs-dbgsym_2.0.2+dfsg-12_riscv64.deb'.
dpkg-genbuildinfo --build=any -O../pirs_2.0.2+dfsg-12_riscv64.buildinfo
dpkg-genchanges --build=any -O../pirs_2.0.2+dfsg-12_riscv64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2025-03-28T17:11:35Z
+------------------------------------------------------------------------------+
| Finished Timed Build Commands |
+------------------------------------------------------------------------------+
rm -Rf /<<PKGBUILDDIR>>/
------------------------------------------
I: Finished running 'rm -Rf /<<PKGBUILDDIR>>/'.
Finished processing commands.
--------------------------------------------------------------------------------
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pirs_2.0.2+dfsg-12_riscv64.changes:
-----------------------------------
Format: 1.8
Date: Mon, 18 Dec 2023 14:39:21 +0100
Source: pirs
Binary: pirs pirs-dbgsym
Built-For-Profiles: cross nocheck
Architecture: riscv64
Version: 2.0.2+dfsg-12
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
pirs - Profile based Illumina pair-end Reads Simulator
Closes: 1048393 1056023
Changes:
pirs (2.0.2+dfsg-12) unstable; urgency=medium
.
* Team upload.
.
[ Andreas Tille ]
* Forward patch
* Fix clean target
Closes: #1048393
.
[ Étienne Mollier ]
* d/rules: define BOOST_TIMER_ENABLE_DEPRECATED.
This flag is passed to C preprocessor options to fix failure to build
from source with boost 1.83. (Closes: #1056023)
* d/control: gnuplot-qt as default gnuplot dependency.
* d/control: declare compliance to standars version 4.6.2.
* typos.patch: new: fix typos caught by lintian.
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Files:
dcc4164f2aaf6569e1339ca7c1a4c066 270320 debug optional pirs-dbgsym_2.0.2+dfsg-12_riscv64.deb
9a5bc0c704d85f59a6f649dfdbe93111 5006 science optional pirs_2.0.2+dfsg-12_riscv64.buildinfo
6de3b3208484f22b7d0b2928ba59c63c 116056 science optional pirs_2.0.2+dfsg-12_riscv64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: pirs
Binary: pirs pirs-dbgsym
Architecture: riscv64
Version: 2.0.2+dfsg-12
Checksums-Md5:
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Checksums-Sha256:
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175aed9c62b4733dfb6edca0d41c840d345209a9ca92dbe9b0339cbab84857d3 116056 pirs_2.0.2+dfsg-12_riscv64.deb
Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Fri, 28 Mar 2025 17:11:35 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.17-4),
autopoint (= 0.23.1-1),
autotools-dev (= 20240727.1),
base-files (= 13.7),
base-passwd (= 3.6.7),
bash (= 5.2.37-1.1+b1),
binutils (= 2.44-3),
binutils-common (= 2.44-3),
binutils-x86-64-linux-gnu (= 2.44-3),
bsdextrautils (= 2.40.4-5),
bsdutils (= 1:2.40.4-5),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
coreutils (= 9.5-1+b1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-19),
cpp-14-x86-64-linux-gnu (= 14.2.0-19),
cpp-x86-64-linux-gnu (= 4:14.2.0-1),
dash (= 0.5.12-12),
debconf (= 1.5.91),
debhelper (= 13.24.1),
debianutils (= 5.21),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.14.1-2),
diffutils (= 1:3.10-3),
dpkg (= 1.22.18),
dpkg-dev (= 1.22.18),
dwz (= 0.15-1+b1),
file (= 1:5.46-3),
findutils (= 4.10.0-3),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-19),
g++-14-x86-64-linux-gnu (= 14.2.0-19),
g++-x86-64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-19),
gcc-14-base (= 14.2.0-19),
gcc-14-x86-64-linux-gnu (= 14.2.0-19),
gcc-x86-64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.23.1-1),
gettext-base (= 0.23.1-1),
grep (= 3.11-4),
groff-base (= 1.23.0-7),
gzip (= 1.13-1),
hostname (= 3.25),
init-system-helpers (= 1.68),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2+b1),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-19),
libatomic1 (= 14.2.0-19),
libattr1 (= 1:2.5.2-3),
libaudit-common (= 1:4.0.2-2),
libaudit1 (= 1:4.0.2-2+b2),
libbinutils (= 2.44-3),
libblkid1 (= 2.40.4-5),
libboost-dev (= 1.83.0.2+b2),
libboost1.83-dev (= 1.83.0-4.2),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.41-6),
libc-dev-bin (= 2.41-6),
libc6 (= 2.41-6),
libc6-dev (= 2.41-6),
libcap-ng0 (= 0.8.5-4+b1),
libcap2 (= 1:2.75-4),
libcc1-0 (= 14.2.0-19),
libcrypt-dev (= 1:4.4.38-1),
libcrypt1 (= 1:4.4.38-1),
libctf-nobfd0 (= 2.44-3),
libctf0 (= 2.44-3),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.277),
libdebhelper-perl (= 13.24.1),
libdpkg-perl (= 1.22.18),
libelf1t64 (= 0.192-4),
libfile-stripnondeterminism-perl (= 1.14.1-2),
libgcc-14-dev (= 14.2.0-19),
libgcc-s1 (= 14.2.0-19),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgmp10 (= 2:6.3.0+dfsg-3),
libgomp1 (= 14.2.0-19),
libgprofng0 (= 2.44-3),
libgzstream-dev (= 1.5+git20171107.9a20658-3),
libgzstream0 (= 1.5+git20171107.9a20658-3),
libhwasan0 (= 14.2.0-19),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-19),
libjansson4 (= 2.14-2+b3),
liblsan0 (= 14.2.0-19),
liblzma5 (= 5.6.4-1),
libmagic-mgc (= 1:5.46-3),
libmagic1t64 (= 1:5.46-3),
libmd0 (= 1.1.0-2+b1),
libmount1 (= 2.40.4-5),
libmpc3 (= 1.3.1-1+b3),
libmpfr6 (= 4.2.2-1),
libpam-modules (= 1.7.0-3),
libpam-modules-bin (= 1.7.0-3),
libpam-runtime (= 1.7.0-3),
libpam0g (= 1.7.0-3),
libpcre2-8-0 (= 10.45-1),
libperl5.40 (= 5.40.1-2),
libpipeline1 (= 1.5.8-1),
libquadmath0 (= 14.2.0-19),
libseccomp2 (= 2.6.0-2),
libselinux1 (= 3.8.1-1),
libsframe1 (= 2.44-3),
libsmartcols1 (= 2.40.4-5),
libssl3t64 (= 3.4.1-1),
libstdc++-14-dev (= 14.2.0-19),
libstdc++6 (= 14.2.0-19),
libsystemd0 (= 257.4-5),
libtinfo6 (= 6.5+20250216-2),
libtool (= 2.5.4-4),
libtsan2 (= 14.2.0-19),
libubsan1 (= 14.2.0-19),
libuchardet0 (= 0.0.8-1+b2),
libudev1 (= 257.4-5),
libunistring5 (= 1.3-2),
libuuid1 (= 2.40.4-5),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.4),
libzstd1 (= 1.5.7+dfsg-1),
linux-libc-dev (= 6.12.20-1),
m4 (= 1.4.19-7),
make (= 4.4.1-1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20250131-1),
ncurses-base (= 6.5+20250216-2),
ncurses-bin (= 6.5+20250216-2),
openssl-provider-legacy (= 3.4.1-1),
patch (= 2.7.6-7),
perl (= 5.40.1-2),
perl-base (= 5.40.1-2),
perl-modules-5.40 (= 5.40.1-2),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.14-4),
tar (= 1.35+dfsg-3.1),
util-linux (= 2.40.4-5),
xz-utils (= 5.6.4-1),
zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
DEB_BUILD_OPTIONS="nocheck parallel=1"
DEB_BUILD_PROFILES="cross nocheck"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1702906761"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
pirs-dbgsym_2.0.2+dfsg-12_riscv64.deb
-------------------------------------
new Debian package, version 2.0.
size 270320 bytes: control archive=596 bytes.
413 bytes, 12 lines control
212 bytes, 2 lines md5sums
Package: pirs-dbgsym
Source: pirs
Version: 2.0.2+dfsg-12
Auto-Built-Package: debug-symbols
Architecture: riscv64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 472
Depends: pirs (= 2.0.2+dfsg-12)
Section: debug
Priority: optional
Description: debug symbols for pirs
Build-Ids: 505b229fd54f8f4190b2ca78823ac5369a1d0e6f f33e60f9c2f7d7fc79643dbade671c380005b0c4
drwxr-xr-x root/root 0 2023-12-18 13:39 ./
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/lib/
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/lib/debug/.build-id/50/
-rw-r--r-- root/root 103896 2023-12-18 13:39 ./usr/lib/debug/.build-id/50/5b229fd54f8f4190b2ca78823ac5369a1d0e6f.debug
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/lib/debug/.build-id/f3/
-rw-r--r-- root/root 367448 2023-12-18 13:39 ./usr/lib/debug/.build-id/f3/3e60f9c2f7d7fc79643dbade671c380005b0c4.debug
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/share/
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/share/doc/pirs-dbgsym -> pirs
pirs_2.0.2+dfsg-12_riscv64.deb
------------------------------
new Debian package, version 2.0.
size 116056 bytes: control archive=1760 bytes.
1426 bytes, 27 lines control
1660 bytes, 25 lines md5sums
Package: pirs
Version: 2.0.2+dfsg-12
Architecture: riscv64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 334
Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.4), libgomp1 (>= 4.9), libgzstream0 (>= 1.5+git20171107.9a20658), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.0.2), pirs-profiles, fonts-liberation, gnuplot-qt | gnuplot
Section: science
Priority: optional
Homepage: https://github.com/galaxy001/pirs
Description: Profile based Illumina pair-end Reads Simulator
The program pIRS can be used for simulating Illumina PE reads, with a
series of characters generated by Illumina sequencing platform, such as
insert size distribution, sequencing error(substitution, insertion,
deletion), quality score and GC content-coverage bias.
.
The insert size follows a normal distribution, so users should set the
mean value and standard deviation. Usually the standard deviation is set
as 1/20 of the mean value. The normal distribution by Box-Muller method
is simulated.
.
The program simulates sequencing error, quality score and GC content-
coverage bias according to the empirical distribution profile. Some
default profiles counted from lots of real sequencing data are provided.
.
To simulate reads from diploid genome, users should simulate the diploid
genome sequence firstly by setting the ratio of heterozygosis SNP,
heterozygosis InDel and structure variation.
drwxr-xr-x root/root 0 2023-12-18 13:39 ./
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/bin/
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/alignment_stator -> ../lib/pirs/alignment_stator.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/baseCalling_Matrix_analyzer -> ../lib/pirs/baseCalling_Matrix_analyzer.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/baseCalling_Matrix_calculator -> ../lib/pirs/baseCalling_Matrix_calculator.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/baseCalling_Matrix_calculator.0 -> ../lib/pirs/baseCalling_Matrix_calculator.0.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/baseCalling_Matrix_merger -> ../lib/pirs/baseCalling_Matrix_merger.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/baseCalling_Matrix_merger.old -> ../lib/pirs/baseCalling_Matrix_merger.old.pl
-rwxr-xr-x root/root 84400 2023-12-18 13:39 ./usr/bin/gc_coverage_bias
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/gc_coverage_bias_plot -> ../lib/pirs/gc_coverage_bias_plot.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/gethist -> ../lib/pirs/gethist.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/ifollowQ -> ../lib/pirs/ifollowQ.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/ifollowQmerge -> ../lib/pirs/ifollowQmerge.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/ifollowQplot -> ../lib/pirs/ifollowQplot.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/ifqQ -> ../lib/pirs/ifqQ.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/indelstat_sam_bam -> ../lib/pirs/indelstat_sam_bam.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/itilestator -> ../lib/pirs/itilestator.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/loess -> ../lib/pirs/loess.pl
lrwxrwxrwx root/root 0 2023-12-18 13:39 ./usr/bin/pifollowQmerge -> ../lib/pirs/pifollowQmerge.pl
-rwxr-xr-x root/root 92488 2023-12-18 13:39 ./usr/bin/pirs
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/lib/
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/lib/pirs/
-rwxr-xr-x root/root 15714 2023-12-18 13:39 ./usr/lib/pirs/alignment_stator.pl
-rwxr-xr-x root/root 11244 2023-12-18 13:39 ./usr/lib/pirs/baseCalling_Matrix_analyzer.pl
-rwxr-xr-x root/root 20935 2023-12-18 13:39 ./usr/lib/pirs/baseCalling_Matrix_calculator.0.pl
-rwxr-xr-x root/root 19564 2023-12-18 13:39 ./usr/lib/pirs/baseCalling_Matrix_calculator.pl
-rwxr-xr-x root/root 5672 2023-12-18 13:39 ./usr/lib/pirs/baseCalling_Matrix_merger.old.pl
-rwxr-xr-x root/root 6280 2023-12-18 13:39 ./usr/lib/pirs/baseCalling_Matrix_merger.pl
-rwxr-xr-x root/root 3231 2023-12-18 13:39 ./usr/lib/pirs/gc_coverage_bias_plot.pl
-rwxr-xr-x root/root 358 2023-12-18 13:39 ./usr/lib/pirs/gethist.pl
-rwxr-xr-x root/root 4055 2023-12-18 13:39 ./usr/lib/pirs/ifollowQ.pl
-rwxr-xr-x root/root 3530 2023-12-18 13:39 ./usr/lib/pirs/ifollowQmerge.pl
-rwxr-xr-x root/root 613 2023-12-18 13:39 ./usr/lib/pirs/ifollowQplot.pl
-rwxr-xr-x root/root 1820 2023-12-18 13:39 ./usr/lib/pirs/ifqQ.pl
-rwxr-xr-x root/root 7228 2023-12-18 13:39 ./usr/lib/pirs/indelstat_sam_bam.pl
-rwxr-xr-x root/root 2679 2023-12-18 13:39 ./usr/lib/pirs/itilestator.pl
-rwxr-xr-x root/root 1460 2016-08-14 05:10 ./usr/lib/pirs/loess.pl
-rwxr-xr-x root/root 3080 2023-12-18 13:39 ./usr/lib/pirs/pifollowQmerge.pl
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/share/
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-12-18 13:39 ./usr/share/doc/pirs/
-rw-r--r-- root/root 7185 2023-12-18 13:39 ./usr/share/doc/pirs/README.gz
-rw-r--r-- root/root 313 2023-12-18 13:39 ./usr/share/doc/pirs/README.test
-rw-r--r-- root/root 894 2023-12-18 13:39 ./usr/share/doc/pirs/changelog.Debian.gz
-rw-r--r-- root/root 3446 2016-08-14 05:10 ./usr/share/doc/pirs/changelog.gz
-rw-r--r-- root/root 2931 2023-12-18 13:39 ./usr/share/doc/pirs/copyright
-rw-r--r-- root/root 1067 2023-12-18 13:39 ./usr/share/doc/pirs/run-unit-test
-rw-r--r-- root/root 1288 2016-08-14 05:10 ./usr/share/doc/pirs/strator_readme.txt
lintian
-------
Setup apt archive
-----------------
Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1345 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1428 B]
Fetched 3388 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl
libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
libdevel-stacktrace-perl libdynaloader-functions-perl
libemail-address-xs-perl libencode-locale-perl libexception-class-perl
libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64
libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl
libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0
libimport-into-perl libio-html-perl libio-interactive-perl
libio-socket-ssl-perl libio-string-perl libipc-run3-perl
libipc-system-simple-perl libiterator-perl libiterator-util-perl
libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl
liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2
libmarkdown2 libmldbm-perl libmodule-implementation-perl
libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl
libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16
libngtcp2-crypto-gnutls8 libnumber-compare-perl libp11-kit0
libpackage-stash-perl libparams-classify-perl libparams-util-perl
libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64
libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2
libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl
libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d
libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl
libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl
libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl
libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl
libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl
libunicode-utf8-perl liburi-perl libvariable-magic-perl
libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl
libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2
libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop
netbase openssl patchutils perl-openssl-defaults plzip procps
readline-common shared-mime-info t1utils ucf unzip
Suggested packages:
apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor
gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl
libscalar-number-perl libbareword-filehandles-perl libindirect-perl
libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl
libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch
libtext-template-perl readline-doc zip
Recommended packages:
gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n
libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common
liblist-someutils-xs-perl libfreezethaw-perl libgpm2 libmath-base85-perl
libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules
libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl
libxml-sax-expat-perl psmisc linux-sysctl-defaults
The following NEW packages will be installed:
appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl
libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
libdevel-stacktrace-perl libdynaloader-functions-perl
libemail-address-xs-perl libencode-locale-perl libexception-class-perl
libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64
libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl
libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0
libimport-into-perl libio-html-perl libio-interactive-perl
libio-socket-ssl-perl libio-string-perl libipc-run3-perl
libipc-system-simple-perl libiterator-perl libiterator-util-perl
libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl
liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2
libmarkdown2 libmldbm-perl libmodule-implementation-perl
libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl
libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16
libngtcp2-crypto-gnutls8 libnumber-compare-perl libp11-kit0
libpackage-stash-perl libparams-classify-perl libparams-util-perl
libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64
libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2
libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl
libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d
libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl
libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl
libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl
libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl
libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl
libunicode-utf8-perl liburi-perl libvariable-magic-perl
libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl
libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2
libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop
netbase openssl patchutils perl-openssl-defaults plzip procps
readline-common sbuild-build-depends-lintian-dummy:riscv64 shared-mime-info
t1utils ucf unzip
0 upgraded, 173 newly installed, 0 to remove and 0 not upgraded.
Need to get 23.1 MB of archives.
After this operation, 87.7 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20241223 [164 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0050 [42.7 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.0-2 [1513 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get:24 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.13.0~rc3-1 [374 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 2.2.0-4+b2 [119 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.22-1 [63.1 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.0.4-1 [225 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.0.4-1 [523 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.67-1 [35.5 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.2.46-6 [122 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.2.46-6 [533 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.17.0-1 [3055 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.41 [68.3 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:61 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.67-1 [217 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get:70 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:72 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:80 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:82 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:83 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-1+b4 [32.8 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB]
Get:89 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB]
Get:91 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1+b1 [24.2 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:99 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:100 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:101 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB]
Get:102 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:103 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:104 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:105 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get:106 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:107 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:108 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:110 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get:111 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:112 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:113 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:114 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:115 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:116 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:117 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB]
Get:118 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB]
Get:119 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get:120 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:121 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:122 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB]
Get:123 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:124 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:125 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.026-1 [11.7 kB]
Get:126 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB]
Get:127 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get:128 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:129 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB]
Get:130 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:131 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-3 [39.0 kB]
Get:132 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB]
Get:133 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB]
Get:134 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:135 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:136 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get:137 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:138 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:139 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B]
Get:140 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB]
Get:141 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:142 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get:143 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB]
Get:144 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:145 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB]
Get:146 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB]
Get:147 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get:148 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b3 [42.3 kB]
Get:149 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:150 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB]
Get:151 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB]
Get:152 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:153 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.48-2 [65.7 kB]
Get:154 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.30-1+b1 [27.4 kB]
Get:155 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get:156 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B]
Get:157 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB]
Get:158 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB]
Get:159 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:160 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB]
Get:161 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-2+b3 [20.4 kB]
Get:162 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB]
Get:163 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:164 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:165 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
Get:166 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB]
Get:167 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.903.0+ds-1 [35.4 kB]
Get:168 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-3 [65.0 kB]
Get:169 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:170 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:171 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:172 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB]
Get:173 http://localhost:3142/debian unstable/main amd64 lintian all 2.121.2 [1060 kB]
Preconfiguring packages ...
Fetched 23.1 MB in 0s (113 MB/s)
Selecting previously unselected package netbase.
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Unpacking procps (2:4.0.4-7) ...
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Unpacking openssl (3.4.1-1) ...
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Unpacking ca-certificates (20241223) ...
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Unpacking libglib2.0-0t64:amd64 (2.84.0-2) ...
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Selecting previously unselected package libgnutls30t64:amd64.
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Unpacking libcom-err2:amd64 (1.47.2-1+b1) ...
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Selecting previously unselected package libgssapi-krb5-2:amd64.
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Selecting previously unselected package libsasl2-modules-db:amd64.
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Selecting previously unselected package libldap2:amd64.
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Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64.
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Selecting previously unselected package libpsl5t64:amd64.
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Selecting previously unselected package librtmp1:amd64.
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Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:amd64.
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Selecting previously unselected package libcurl3t64-gnutls:amd64.
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Selecting previously unselected package libxmlb2:amd64.
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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Selecting previously unselected package libberkeleydb-perl:amd64.
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Selecting previously unselected package libcpanel-json-xs-perl:amd64.
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update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
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Setting up libcpanel-json-xs-perl:amd64 (4.39-1) ...
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Setting up libclass-xsaccessor-perl (1.19-4+b5) ...
Setting up libkrb5-3:amd64 (1.21.3-5) ...
Setting up libstemmer0d:amd64 (2.2.0-4+b2) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libterm-readkey-perl (2.38-2+b4) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up openssl (3.4.1-1) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b4) ...
Setting up libperlio-gzip-perl (0.20-1+b4) ...
Setting up readline-common (8.2-6) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.004+ds-1+b3) ...
Setting up libmarkdown2:amd64 (2.2.7-2.1) ...
Setting up libldap2:amd64 (2.6.9+dfsg-2) ...
Setting up liburi-perl (5.30-1) ...
Setting up iso-codes (4.17.0-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b4) ...
Setting up libnet-ssleay-perl:amd64 (1.94-3) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libnet-http-perl (6.23-1) ...
Setting up libtext-markdown-discount-perl (0.18-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libglib2.0-0t64:amd64 (2.84.0-2) ...
No schema files found: doing nothing.
Setting up libdata-validate-uri-perl (0.07-3) ...
Setting up libxs-parse-keyword-perl (0.48-2) ...
Setting up shared-mime-info (2.4-5+b2) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up ucf (3.0050) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libsyntax-keyword-try-perl (0.30-1+b1) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ...
Setting up gpgconf (2.2.46-6) ...
Setting up libio-socket-ssl-perl (2.089-1) ...
Setting up gpg (2.2.46-6) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.00-2) ...
Setting up libhtml-form-perl (6.12-1) ...
Setting up libgnutls30t64:amd64 (3.8.9-2) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libxmlb2:amd64 (0.3.22-1) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libcgi-pm-perl (4.67-1) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.60-1) ...
Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up libcurl3t64-gnutls:amd64 (8.13.0~rc3-1) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libappstream5:amd64 (1.0.4-1) ...
Setting up appstream (1.0.4-1) ...
✔ Metadata cache was updated successfully.
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.28-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.78-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.19-1) ...
Setting up lintian (2.121.2) ...
Setting up sbuild-build-depends-lintian-dummy:riscv64 (0.invalid.0) ...
Processing triggers for libc-bin (2.41-6) ...
Processing triggers for man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...
I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 28
Distribution: unstable
Foreign Architectures: riscv64
Host Architecture: riscv64
Install-Time: 11
Job: pirs_2.0.2+dfsg-12
Lintian: pass
Machine Architecture: amd64
Package: pirs
Package-Time: 54
Source-Version: 2.0.2+dfsg-12
Space: n/a
Status: successful
Version: 2.0.2+dfsg-12
--------------------------------------------------------------------------------
Finished at 2025-03-28T17:11:35Z
Build needed 00:00:54, no disk space