sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | pirs 2.0.2+dfsg-8 (mipsel) Sat, 25 May 2019 10:12:39 +0000 | +==============================================================================+ Package: pirs Version: 2.0.2+dfsg-8 Source Version: 2.0.2+dfsg-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-8ec640d8-5542-427b-a9dd-16ced5982cff' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [247 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-25-0819.57.pdiff [483 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-25-0819.57.pdiff [251 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-25-0819.57.pdiff [483 B] Get:6 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8041 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-25-0819.57.pdiff [251 B] Fetched 8344 kB in 2s (4232 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pirs' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pirs.git Please use: git clone https://salsa.debian.org/med-team/pirs.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6038 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main pirs 2.0.2+dfsg-8 (dsc) [2110 B] Get:2 http://debian.oregonstate.edu/debian unstable/main pirs 2.0.2+dfsg-8 (tar) [6029 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main pirs 2.0.2+dfsg-8 (diff) [6816 B] Fetched 6038 kB in 0s (30.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/pirs-N08kqa/pirs-2.0.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/pirs-N08kqa' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-49bI54/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-49bI54/apt_archive ./ InRelease Get:2 copy:/<>/resolver-49bI54/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-49bI54/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-49bI54/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-49bI54/apt_archive ./ Packages [451 B] Fetched 1771 B in 0s (93.6 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mipsel-linux-gnu gcc-8-doc libstdc++6-8-dbg-mipsel-cross gcc-8-multilib-mipsel-linux-gnu libgcc1-dbg-mipsel-cross libgomp1-dbg-mipsel-cross libitm1-dbg-mipsel-cross libatomic1-dbg-mipsel-cross libasan5-dbg-mipsel-cross liblsan0-dbg-mipsel-cross libtsan0-dbg-mipsel-cross libubsan1-dbg-mipsel-cross libmpx2-dbg-mipsel-cross libquadmath0-dbg-mipsel-cross manpages-dev autoconf automake libtool flex bison gdb-mipsel-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sbuild-build-depends-core-dummy:mipsel sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 146 MB of additional disk space will be used. Get:1 copy:/<>/resolver-49bI54/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.31.1-16 [2487 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu-base amd64 8.3.0-7cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6278 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.28-10cross2 [1229 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mipsel-cross all 1:8.3.0-7cross1 [46.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 8.3.0-7cross1 [69.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 8.3.0-7cross1 [6692 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mipsel-cross all 8.3.0-7cross1 [211 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6691 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:8.3.0-1 [1452 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 8.3.0-7cross1 [311 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 4.19.28-2cross2 [1240 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.28-10cross2 [2320 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mipsel-cross all 8.3.0-7cross1 [1535 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6853 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:8.3.0-1 [1172 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.6 [6564 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 1s (64.5 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11942 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-mipsel-linux-gnu. Preparing to unpack .../06-binutils-mipsel-linux-gnu_2.31.1-16_amd64.deb ... Unpacking binutils-mipsel-linux-gnu (2.31.1-16) ... Selecting previously unselected package gcc-8-mipsel-linux-gnu-base:amd64. Preparing to unpack .../07-gcc-8-mipsel-linux-gnu-base_8.3.0-7cross1_amd64.deb ... Unpacking gcc-8-mipsel-linux-gnu-base:amd64 (8.3.0-7cross1) ... Selecting previously unselected package cpp-8-mipsel-linux-gnu. Preparing to unpack .../08-cpp-8-mipsel-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking cpp-8-mipsel-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package cpp-mipsel-linux-gnu. Preparing to unpack .../09-cpp-mipsel-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking cpp-mipsel-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-2_all.deb ... Unpacking cross-config (2.6.15-2) ... 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Selecting previously unselected package libgcc-8-dev-mipsel-cross. Preparing to unpack .../16-libgcc-8-dev-mipsel-cross_8.3.0-7cross1_all.deb ... Unpacking libgcc-8-dev-mipsel-cross (8.3.0-7cross1) ... Selecting previously unselected package gcc-8-mipsel-linux-gnu. Preparing to unpack .../17-gcc-8-mipsel-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking gcc-8-mipsel-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package gcc-mipsel-linux-gnu. Preparing to unpack .../18-gcc-mipsel-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking gcc-mipsel-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package libstdc++6-mipsel-cross. Preparing to unpack .../19-libstdc++6-mipsel-cross_8.3.0-7cross1_all.deb ... Unpacking libstdc++6-mipsel-cross (8.3.0-7cross1) ... Selecting previously unselected package linux-libc-dev-mipsel-cross. Preparing to unpack .../20-linux-libc-dev-mipsel-cross_4.19.28-2cross2_all.deb ... Unpacking linux-libc-dev-mipsel-cross (4.19.28-2cross2) ... Selecting previously unselected package libc6-dev-mipsel-cross. Preparing to unpack .../21-libc6-dev-mipsel-cross_2.28-10cross2_all.deb ... Unpacking libc6-dev-mipsel-cross (2.28-10cross2) ... Selecting previously unselected package libstdc++-8-dev-mipsel-cross. Preparing to unpack .../22-libstdc++-8-dev-mipsel-cross_8.3.0-7cross1_all.deb ... Unpacking libstdc++-8-dev-mipsel-cross (8.3.0-7cross1) ... Selecting previously unselected package g++-8-mipsel-linux-gnu. Preparing to unpack .../23-g++-8-mipsel-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking g++-8-mipsel-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package g++-mipsel-linux-gnu. Preparing to unpack .../24-g++-mipsel-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking g++-mipsel-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../25-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... 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Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../32-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../33-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../34-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../35-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../36-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../37-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../38-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../39-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-mipsel. Preparing to unpack .../40-crossbuild-essential-mipsel_12.6_all.deb ... Unpacking crossbuild-essential-mipsel (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:mipsel. Preparing to unpack .../41-sbuild-build-depends-core-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-7cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libc6-mipsel-cross (2.28-10cross2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libatomic1-mipsel-cross (8.3.0-7cross1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up libgcc1-mipsel-cross (1:8.3.0-7cross1) ... Setting up binutils-mipsel-linux-gnu (2.31.1-16) ... Setting up libgomp1-mipsel-cross (8.3.0-7cross1) ... Setting up gcc-8-mipsel-linux-gnu-base:amd64 (8.3.0-7cross1) ... Setting up linux-libc-dev-mipsel-cross (4.19.28-2cross2) ... Setting up sensible-utils (0.0.12) ... Setting up cpp-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc-8-dev-mipsel-cross (8.3.0-7cross1) ... Setting up libc6-dev-mipsel-cross (2.28-10cross2) ... Setting up libstdc++6-mipsel-cross (8.3.0-7cross1) ... Setting up cpp-mipsel-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++-8-dev-mipsel-cross (8.3.0-7cross1) ... Setting up gcc-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up g++-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-mipsel (12.6) ... Setting up sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-49bI54/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-49bI54/apt_archive ./ InRelease Get:2 copy:/<>/resolver-49bI54/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-49bI54/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-49bI54/apt_archive ./ Sources [482 B] Get:5 copy:/<>/resolver-49bI54/apt_archive ./ Packages [570 B] Fetched 2015 B in 0s (112 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mipsel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-49bI54/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mipsel. (Reading database ... 15113 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-dev, zlib1g-dev, libgzstream-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-dev, zlib1g-dev, libgzstream-dev dpkg-deb: building package 'sbuild-build-depends-pirs-dummy' in '/<>/resolver-49bI54/apt_archive/sbuild-build-depends-pirs-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-pirs-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-49bI54/apt_archive ./ InRelease Get:2 copy:/<>/resolver-49bI54/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-49bI54/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-49bI54/apt_archive ./ Sources [655 B] Get:5 copy:/<>/resolver-49bI54/apt_archive ./ Packages [736 B] Fetched 2354 B in 0s (109 kB/s) Reading package lists... Reading package lists... Install pirs build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libboost-dev:mipsel libboost1.67-dev:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libgzstream-dev:mipsel libgzstream0:mipsel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 linux-libc-dev:mipsel m4 man-db po-debconf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:mipsel libboost1.67-doc:mipsel libboost-atomic1.67-dev:mipsel libboost-chrono1.67-dev:mipsel libboost-container1.67-dev:mipsel libboost-context1.67-dev:mipsel libboost-coroutine1.67-dev:mipsel libboost-date-time1.67-dev:mipsel libboost-exception1.67-dev:mipsel libboost-fiber1.67-dev:mipsel libboost-filesystem1.67-dev:mipsel libboost-graph1.67-dev:mipsel libboost-graph-parallel1.67-dev:mipsel libboost-iostreams1.67-dev:mipsel libboost-locale1.67-dev:mipsel libboost-log1.67-dev:mipsel libboost-math1.67-dev:mipsel libboost-mpi1.67-dev:mipsel libboost-mpi-python1.67-dev:mipsel libboost-numpy1.67-dev:mipsel libboost-program-options1.67-dev:mipsel libboost-python1.67-dev:mipsel libboost-random1.67-dev:mipsel libboost-regex1.67-dev:mipsel libboost-serialization1.67-dev:mipsel libboost-signals1.67-dev:mipsel libboost-stacktrace1.67-dev:mipsel libboost-system1.67-dev:mipsel libboost-test1.67-dev:mipsel libboost-thread1.67-dev:mipsel libboost-timer1.67-dev:mipsel libboost-type-erasure1.67-dev:mipsel libboost-wave1.67-dev:mipsel libboost1.67-tools-dev:mipsel libmpfrc++-dev:mipsel libntl-dev:mipsel glibc-doc:mipsel libc-l10n:mipsel locales:mipsel manpages-dev:mipsel libstdc++-8-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libboost-dev:mipsel libboost1.67-dev:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libgzstream-dev:mipsel libgzstream0:mipsel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 linux-libc-dev:mipsel m4 man-db po-debconf sbuild-build-depends-pirs-dummy:mipsel zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 26.7 MB of archives. After this operation, 211 MB of additional disk space will be used. Get:1 copy:/<>/resolver-49bI54/apt_archive ./ sbuild-build-depends-pirs-dummy 0.invalid.0 [896 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-8-base mipsel 8.3.0-7 [191 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc1 mipsel 1:8.3.0-7 [45.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.28-10 [2429 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 8.3.0-7 [6692 B] Get:33 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 8.3.0-7 [70.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-8-dev mipsel 8.3.0-7 [210 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 8.3.0-7 [349 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 4.19.37-3 [1178 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.28-10 [2322 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-8-dev mipsel 8.3.0-7 [1552 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main mipsel libboost1.67-dev mipsel 1.67.0-13 [8386 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-dev mipsel 1.67.0.1 [3864 B] Get:41 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-1 [90.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main mipsel libgzstream0 mipsel 1.5+dfsg-4 [6560 B] Get:43 http://debian.oregonstate.edu/debian unstable/main mipsel libgzstream-dev mipsel 1.5+dfsg-4 [7148 B] Get:44 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-1 [213 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.7 MB in 0s (54.9 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15113 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.176-1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../21-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../22-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package gcc-8-base:mipsel. Preparing to unpack .../27-gcc-8-base_8.3.0-7_mipsel.deb ... Unpacking gcc-8-base:mipsel (8.3.0-7) ... Selecting previously unselected package libgcc1:mipsel. Preparing to unpack .../28-libgcc1_1%3a8.3.0-7_mipsel.deb ... Unpacking libgcc1:mipsel (1:8.3.0-7) ... Selecting previously unselected package libc6:mipsel. Preparing to unpack .../29-libc6_2.28-10_mipsel.deb ... Unpacking libc6:mipsel (2.28-10) ... Selecting previously unselected package libatomic1:mipsel. Preparing to unpack .../30-libatomic1_8.3.0-7_mipsel.deb ... Unpacking libatomic1:mipsel (8.3.0-7) ... Selecting previously unselected package libgomp1:mipsel. Preparing to unpack .../31-libgomp1_8.3.0-7_mipsel.deb ... Unpacking libgomp1:mipsel (8.3.0-7) ... Selecting previously unselected package libgcc-8-dev:mipsel. Preparing to unpack .../32-libgcc-8-dev_8.3.0-7_mipsel.deb ... Unpacking libgcc-8-dev:mipsel (8.3.0-7) ... Selecting previously unselected package libstdc++6:mipsel. Preparing to unpack .../33-libstdc++6_8.3.0-7_mipsel.deb ... Unpacking libstdc++6:mipsel (8.3.0-7) ... Selecting previously unselected package linux-libc-dev:mipsel. Preparing to unpack .../34-linux-libc-dev_4.19.37-3_mipsel.deb ... Unpacking linux-libc-dev:mipsel (4.19.37-3) ... Selecting previously unselected package libc6-dev:mipsel. Preparing to unpack .../35-libc6-dev_2.28-10_mipsel.deb ... Unpacking libc6-dev:mipsel (2.28-10) ... Selecting previously unselected package libstdc++-8-dev:mipsel. Preparing to unpack .../36-libstdc++-8-dev_8.3.0-7_mipsel.deb ... Unpacking libstdc++-8-dev:mipsel (8.3.0-7) ... Selecting previously unselected package libboost1.67-dev:mipsel. Preparing to unpack .../37-libboost1.67-dev_1.67.0-13_mipsel.deb ... Unpacking libboost1.67-dev:mipsel (1.67.0-13) ... Selecting previously unselected package libboost-dev:mipsel. Preparing to unpack .../38-libboost-dev_1.67.0.1_mipsel.deb ... Unpacking libboost-dev:mipsel (1.67.0.1) ... Selecting previously unselected package zlib1g:mipsel. Preparing to unpack .../39-zlib1g_1%3a1.2.11.dfsg-1_mipsel.deb ... Unpacking zlib1g:mipsel (1:1.2.11.dfsg-1) ... Selecting previously unselected package libgzstream0:mipsel. Preparing to unpack .../40-libgzstream0_1.5+dfsg-4_mipsel.deb ... Unpacking libgzstream0:mipsel (1.5+dfsg-4) ... Selecting previously unselected package libgzstream-dev:mipsel. Preparing to unpack .../41-libgzstream-dev_1.5+dfsg-4_mipsel.deb ... Unpacking libgzstream-dev:mipsel (1.5+dfsg-4) ... Selecting previously unselected package zlib1g-dev:mipsel. Preparing to unpack .../42-zlib1g-dev_1%3a1.2.11.dfsg-1_mipsel.deb ... Unpacking zlib1g-dev:mipsel (1:1.2.11.dfsg-1) ... Selecting previously unselected package sbuild-build-depends-pirs-dummy:mipsel. Preparing to unpack .../43-sbuild-build-depends-pirs-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-pirs-dummy:mipsel (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:mipsel (4.19.37-3) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mipsel (8.3.0-7) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:mipsel (2.28-10) ... Setting up libc6-dev:mipsel (2.28-10) ... Setting up libgcc1:mipsel (1:8.3.0-7) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-1) ... Setting up libgomp1:mipsel (8.3.0-7) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:mipsel (8.3.0-7) ... Setting up libgcc-8-dev:mipsel (8.3.0-7) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-1) ... Setting up libstdc++6:mipsel (8.3.0-7) ... Setting up libstdc++-8-dev:mipsel (8.3.0-7) ... Setting up libboost1.67-dev:mipsel (1.67.0-13) ... Setting up debhelper (12.1.1) ... Setting up libgzstream0:mipsel (1.5+dfsg-4) ... Setting up libboost-dev:mipsel (1.67.0.1) ... Setting up libgzstream-dev:mipsel (1.5+dfsg-4) ... Setting up sbuild-build-depends-pirs-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mipsel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mipsel-cross_8.3.0-7cross1 linux-libc-dev_4.19.37-3 Package versions: adduser_3.118 apt_1.8.1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-common_2.31.1-16 binutils-mipsel-linux-gnu_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-mipsel-linux-gnu_8.3.0-7cross1 cpp-mipsel-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-mipsel_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.6 dpkg-cross_2.6.15-2 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.1-3 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-mipsel-linux-gnu_8.3.0-7cross1 g++-mipsel-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-8-mipsel-linux-gnu_8.3.0-7cross1 gcc-8-mipsel-linux-gnu-base_8.3.0-7cross1 gcc-mipsel-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-2 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.1 libarchive-zip-perl_1.64-1 libasan5_8.3.0-7 libatomic1_8.3.0-7 libatomic1-mipsel-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libboost-dev_1.67.0.1 libboost1.67-dev_1.67.0-13 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-mipsel-cross_2.28-10cross2 libc6-mipsel-cross_2.28-10cross2 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-7 libcom-err2_1.45.1-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.6 libelf1_0.176-1 libext2fs2_1.45.1-3 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-7 libgcc-8-dev-mipsel-cross_8.3.0-7cross1 libgcc1_1:8.3.0-7 libgcc1-mipsel-cross_1:8.3.0-7cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-3 libgomp1_8.3.0-7 libgomp1-mipsel-cross_8.3.0-7cross1 libgpg-error0_1.35-1 libgzstream-dev_1.5+dfsg-4 libgzstream0_1.5+dfsg-4 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-7 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-7 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-7 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_8.3.0-7 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.1-3 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mipsel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mipsel-cross_8.3.0-7cross1 libsystemd0_241-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libubsan1_8.3.0-7 libuchardet0_0.0.6-3 libudev1_241-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-3 linux-libc-dev-mipsel-cross_4.19.28-2cross2 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-pirs-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon May 13 06:48:35 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pirs_2.0.2+dfsg-8.dsc dpkg-source: info: extracting pirs in /<>/pirs-2.0.2+dfsg dpkg-source: info: unpacking pirs_2.0.2+dfsg.orig.tar.xz dpkg-source: info: unpacking pirs_2.0.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libgzstream.patch dpkg-source: info: applying Fix-spelling-of-sse2-option.patch dpkg-source: info: applying do_not_seek_for_arial.ttf.patch dpkg-source: info: applying Remove-mtune-compiler-flag.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-8ec640d8-5542-427b-a9dd-16ced5982cff SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pirs dpkg-buildpackage: info: source version 2.0.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel fakeroot debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' dh_auto_clean cd src && ./srclean.sh >/dev/null 2>/dev/null || true make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src debian/rules override_dh_autoreconf make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' cd src && \ mv INSTALL INSTALL.save && \ autoreconf --install && \ mv INSTALL.save INSTALL && \ cd /<>/pirs-2.0.2+dfsg configure.ac:9: installing './compile' configure.ac:3: installing './install-sh' configure.ac:3: installing './missing' Makefile.am: installing './INSTALL' pirs/Makefile.am:28: warning: source file 'SFMT-src-1.4/SFMT.c' is in a subdirectory, pirs/Makefile.am:28: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. pirs/Makefile.am: installing './depcomp' make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' dh_auto_configure -- --enable-pirs-diploid --disable-sse2 cd src && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mipsel-linux-gnu --libexecdir=\${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu --enable-pirs-diploid --disable-sse2 configure: WARNING: unrecognized options: --disable-maintainer-mode configure: loading site script /etc/dpkg-cross/cross-config.mipsel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mipsel-linux-gnu-strip... mipsel-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for mipsel-linux-gnu-g++... mipsel-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether mipsel-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of mipsel-linux-gnu-g++... none checking for mipsel-linux-gnu-gcc... mipsel-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether mipsel-linux-gnu-gcc accepts -g... yes checking for mipsel-linux-gnu-gcc option to accept ISO C89... none needed checking whether mipsel-linux-gnu-gcc understands -c and -o together... yes checking dependency style of mipsel-linux-gnu-gcc... none checking for gzopen in -lz... yes checking Whether to include support for 'pirs diploid' command... yes checking Whether to include support for 'pirs simulate' command... yes checking Whether to include support for multiple threads... yes checking for mipsel-linux-gnu-g++ option to support OpenMP... -fopenmp checking Whether to include support for SSE2 instructions... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating pirs/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' dh_auto_build cd src && make -j1 make[2]: Entering directory '/<>/pirs-2.0.2+dfsg/src' (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /<>/pirs-2.0.2+dfsg/src/missing autoheader) rm -f stamp-h1 touch config.h.in cd . && /bin/bash ./config.status config.h config.status: creating config.h config.status: config.h is unchanged make all-recursive make[3]: Entering directory '/<>/pirs-2.0.2+dfsg/src' Making all in pirs make[4]: Entering directory '/<>/pirs-2.0.2+dfsg/src/pirs' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o InputStream.o InputStream.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o OutputStream.o OutputStream.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp main.cpp:18:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] "Compile Date: " __DATE__ " time: " __TIME__ "\n" ^~~~~~~~ main.cpp:18:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] "Compile Date: " __DATE__ " time: " __TIME__ "\n" ^~~~~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.o util.cpp util.cpp: In function 'void* xmalloc(size_t)': util.cpp:192:15: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fatal_error("Out of memory: tried to allocate %lu bytes", size); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ util.cpp: In function 'void* xrealloc(void*, size_t)': util.cpp:200:15: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fatal_error("Out of memory: tried to reallocate %lu bytes", size); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937-64.o mt19937-64.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_diploid.o pirs_diploid.cpp pirs_diploid.cpp:639:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n", ^ pirs_diploid.cpp:639:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n", ^ pirs_diploid.cpp:639:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n", ^ pirs_diploid.cpp:641:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n", ^ pirs_diploid.cpp:641:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n", ^ pirs_diploid.cpp:641:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n", ^ pirs_diploid.cpp:643:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info(" %#"PRIx64"]\n", het_type_tab[6]); ^ pirs_diploid.cpp: In function 'bool try_indel(const double*, const size_t*, const std::vector&, size_t&, std::vector&, bool, const char*, Counter&)': pirs_diploid.cpp:435:25: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] indel_log_file.printf("%s\t%zu\t%zu\t%c\t%zu\t", ^~~~~~~~~~~~~~~~~~~~~~~~~ id, log_ref_seq_idx, log_diploid_seq_idx, ~~~~~~~~~~~~~~~ pirs_diploid.cpp:435:25: warning: format '%zu' expects argument of type 'size_t', but argument 5 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaseCallingProfile.o BaseCallingProfile.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GCBiasProfile.o GCBiasProfile.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IndelProfile.o IndelProfile.cpp IndelProfile.cpp: In function 'void load_indel_info_line(char*, Profile&)': IndelProfile.cpp:117:26: warning: format '%lu' expects argument of type 'long unsigned int*', but argument 3 has type 'uint64_t*' {aka 'long long unsigned int*'} [-Wformat=] } else if (sscanf(line, "Read_1_Count = %lu", &n) == 1) ^~~~~~~~~~~~~~~~~~~~ ~~ IndelProfile.cpp:119:24: warning: format '%lu' expects argument of type 'long unsigned int*', but argument 3 has type 'uint64_t*' {aka 'long long unsigned int*'} [-Wformat=] else if (sscanf(line, "Read_2_Count = %lu", &n) == 1) ^~~~~~~~~~~~~~~~~~~~ ~~ IndelProfile.cpp: In constructor 'IndelProfile::IndelProfile(const SimulationParameters&)': IndelProfile.cpp:165:7: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] info(" read_1_count = %lu\n", read_1_count); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ IndelProfile.cpp:166:7: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] info(" read_2_count = %lu\n", read_2_count); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MaskQvalsByEamss.o MaskQvalsByEamss.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Profile.o Profile.cpp mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_simulate.o pirs_simulate.cpp pirs_simulate.cpp:168:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " "DEFAULT_BASE_CALLING_PROFILE"\n" ^ pirs_simulate.cpp:174:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " "DEFAULT_INDEL_PROFILE"\n" ^ pirs_simulate.cpp:180:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " "DEFAULT_GC_BIAS_PROFILE_100",\n" ^ pirs_simulate.cpp:181:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " "DEFAULT_GC_BIAS_PROFILE_150",\n" ^ pirs_simulate.cpp:182:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " "DEFAULT_GC_BIAS_PROFILE_200",\n" ^ pirs_simulate.cpp:672:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] out_file.printf("%cread_%d_%"PRIu64"/%d\n", ^ pirs_simulate.cpp:700:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info_log_file.printf("read_%d_%"PRIu64"/%d\t%s\t%s\t%zu\t%c\t%d\t%d\t", ^ pirs_simulate.cpp:1235:10: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Simulated %"PRIu64" of %"PRIu64" read pairs\n", ^ pirs_simulate.cpp:1235:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Simulated %"PRIu64" of %"PRIu64" read pairs\n", ^ pirs_simulate.cpp:1540:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] insert_log.printf("%d\t%"PRIu64"\n", it->first, it->second); ^ pirs_simulate.cpp:1557:2: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "# The total number of read pairs that were simulated was %"PRIu64".\n" ^ pirs_simulate.cpp:1574:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] error_log.printf("%d\t%"PRIu64"\t%g\n", ^ pirs_simulate.cpp:1579:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] error_log.printf("total\t%"PRIu64"\t%g\n", ^ pirs_simulate.cpp:1685:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] log_parameter(info_log, "Random seed: %"PRIu64"\n", ^ pirs_simulate.cpp:1713:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Program: "PROGRAM "\n"); ^ pirs_simulate.cpp:1714:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Version: "VERSION "\n"); ^ pirs_simulate.cpp:1715:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Author: "AUTHOR "\n"); ^ pirs_simulate.cpp:1716:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Contact: "CONTACT "\n"); ^ pirs_simulate.cpp:1717:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Compile Date: "__DATE__ " time: " __TIME__ "\n"); ^ pirs_simulate.cpp:1717:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] info("Compile Date: "__DATE__ " time: " __TIME__ "\n"); ^~~~~~~~ pirs_simulate.cpp:1717:44: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] info("Compile Date: "__DATE__ " time: " __TIME__ "\n"); ^~~~~~~~ pirs_simulate.cpp:1764:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Bases in reference sequences: %"PRIu64"\n", ^ pirs_simulate.cpp:1766:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Read pairs simulated: %"PRIu64"\n", ^ pirs_simulate.cpp:1768:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Bases in reads: %"PRIu64"\n", ^ pirs_simulate.cpp:1773:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Substitution error count: %"PRIu64"\n", ^ pirs_simulate.cpp:1777:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Insertion count: %"PRIu64"\n", ^ pirs_simulate.cpp:1779:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Deletion count: %"PRIu64"\n", ^ pirs_simulate.cpp:1795:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Bases masked by EAMSS algorithm: %"PRIu64"\n", counters.masked_bases); ^ pirs_simulate.cpp:1856:8: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] info("Note: A random seed (%"PRIu64") was specified on the command line.\n", ^ mipsel-linux-gnu-g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>/pirs-2.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pirs InputStream.o OutputStream.o main.o util.o mt19937-64.o pirs_diploid.o BaseCallingProfile.o GCBiasProfile.o IndelProfile.o MaskQvalsByEamss.o Profile.o pirs_simulate.o -lz -lz make[4]: Leaving directory '/<>/pirs-2.0.2+dfsg/src/pirs' make[4]: Entering directory '/<>/pirs-2.0.2+dfsg/src' make[4]: Leaving directory '/<>/pirs-2.0.2+dfsg/src' make[3]: Leaving directory '/<>/pirs-2.0.2+dfsg/src' make[2]: Leaving directory '/<>/pirs-2.0.2+dfsg/src' dh_auto_build --sourcedirectory=src/stator/gcContCvgBias -- CC='$(CXX)' cd src/stator/gcContCvgBias && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mipsel-linux-gnu-pkg-config CXX=mipsel-linux-gnu-g\+\+ CC=mipsel-linux-gnu-gcc CC=\$\(CXX\) make[2]: Entering directory '/<>/pirs-2.0.2+dfsg/src/stator/gcContCvgBias' mipsel-linux-gnu-g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal self_util.cpp self_util.h self_util.cpp: In function 'char toUpper(const char&)': self_util.cpp:182:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ self_util.cpp: In function 'char toLower(const char&)': self_util.cpp:190:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ mipsel-linux-gnu-g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal main.cpp mipsel-linux-gnu-g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal stat_soap_coverage.h stat_soap_coverage.cpp mipsel-linux-gnu-g++ -o gc_coverage_bias -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal self_util.o main.o stat_soap_coverage.o -Wl,-z,relro -Wl,-z,now -lgzstream -lz make[2]: Leaving directory '/<>/pirs-2.0.2+dfsg/src/stator/gcContCvgBias' make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' dh_auto_install --sourcedirectory=src/stator/gcContCvgBias make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' dh_install mkdir -p debian/pirs/usr/lib/pirs find src -name "*.pl" -exec cp -a \{\} debian/pirs/usr/lib/pirs \; rm -f debian/pirs/usr/lib/pirs/autobam.pl # Fix perl interpreter path for pl in `grep -Rl '#![/usr]*/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![/usr]*/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' debian/rules override_dh_installdocs-arch make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' dh_installdocs -a cp -a src/stator/readme.txt debian/pirs/usr/share/doc/pirs/strator_readme.txt make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' dh_installchangelogs NEWS make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' dh_installinit -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link-arch make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' dh_link -a for pl in debian/pirs/usr/lib/pirs/*.pl ; do \ plname=`basename ${pl}` ; \ ln -s ../lib/pirs/${plname} debian/pirs/usr/bin/`basename ${plname} .pl` ; \ done make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src debian/rules override_dh_fixperms make[1]: Entering directory '/<>/pirs-2.0.2+dfsg' dh_fixperms find debian/*/usr/lib -name "*.pl" -exec chmod +x \{\} \; make[1]: Leaving directory '/<>/pirs-2.0.2+dfsg' dh_missing -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: package pirs: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package pirs: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'pirs' in '../pirs_2.0.2+dfsg-8_mipsel.deb'. dpkg-deb: building package 'pirs-dbgsym' in '../pirs-dbgsym_2.0.2+dfsg-8_mipsel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../pirs_2.0.2+dfsg-8_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-05-25T10:13:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-49bI54/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-pirs-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-49bI54/apt_archive ./ InRelease Get:2 copy:/<>/resolver-49bI54/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-49bI54/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-49bI54/apt_archive ./ Sources [772 B] Get:5 copy:/<>/resolver-49bI54/apt_archive ./ Packages [849 B] Fetched 2584 B in 0s (140 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mipsel t1utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 7767 kB of archives. After this operation, 20.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-49bI54/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-2 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-2 [866 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-2 [1530 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.14.0 [1180 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7767 kB in 0s (37.3 MB/s) Selecting previously unselected package netbase. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ pirs_2.0.2+dfsg-8_mipsel.changes: --------------------------------- Format: 1.8 Date: Sun, 12 May 2019 09:51:09 +0200 Source: pirs Binary: pirs pirs-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 2.0.2+dfsg-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Helmut Grohne Description: pirs - Profile based Illumina pair-end Reads Simulator Closes: 928856 Changes: pirs (2.0.2+dfsg-8) unstable; urgency=medium . * Team upload. * Fix FTCBFS: (Closes: #928856) + Let dh_auto_build pass cross tools to make. + Pass C++ compiler as CC. Checksums-Sha1: 701255dae552ac48ed3b912ff6d178f4031894ca 404040 pirs-dbgsym_2.0.2+dfsg-8_mipsel.deb 106684e8bce20c14f10e364e8b3e89b464b80185 4616 pirs_2.0.2+dfsg-8_mipsel.buildinfo 7312c48b63678599b01010beecc0ee2a2f200395 115496 pirs_2.0.2+dfsg-8_mipsel.deb Checksums-Sha256: 10c99dbf959aa5f840471ef6e19aa419aba07ff1c98bfe0640ae29f1e2cde277 404040 pirs-dbgsym_2.0.2+dfsg-8_mipsel.deb 4499a83c11d384be415e7b99816cfcac713b306529d32a14b68aa4e410f62b2c 4616 pirs_2.0.2+dfsg-8_mipsel.buildinfo 0cfdb4059bfdba6be5d4d33d260e6ecedcec92e72228bc7a17b9786bd3d58229 115496 pirs_2.0.2+dfsg-8_mipsel.deb Files: bc509d1c7d9511d018024de333a489a4 404040 debug optional pirs-dbgsym_2.0.2+dfsg-8_mipsel.deb 8261ed9b240c1d20cab538cbf7059302 4616 science optional pirs_2.0.2+dfsg-8_mipsel.buildinfo 57000ed8efdb9d2402525b643689e988 115496 science optional pirs_2.0.2+dfsg-8_mipsel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: pirs Binary: pirs pirs-profiles pirs-examples Architecture: mipsel Version: 2.0.2+dfsg-8 Checksums-Md5: bc509d1c7d9511d018024de333a489a4 404040 pirs-dbgsym_2.0.2+dfsg-8_mipsel.deb 57000ed8efdb9d2402525b643689e988 115496 pirs_2.0.2+dfsg-8_mipsel.deb Checksums-Sha1: 701255dae552ac48ed3b912ff6d178f4031894ca 404040 pirs-dbgsym_2.0.2+dfsg-8_mipsel.deb 7312c48b63678599b01010beecc0ee2a2f200395 115496 pirs_2.0.2+dfsg-8_mipsel.deb Checksums-Sha256: 10c99dbf959aa5f840471ef6e19aa419aba07ff1c98bfe0640ae29f1e2cde277 404040 pirs-dbgsym_2.0.2+dfsg-8_mipsel.deb 0cfdb4059bfdba6be5d4d33d260e6ecedcec92e72228bc7a17b9786bd3d58229 115496 pirs_2.0.2+dfsg-8_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 25 May 2019 10:13:59 +0000 Build-Path: /<>/pirs-2.0.2+dfsg Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.3), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-7), dash (= 0.5.10.2-5), debconf (= 1.5.72), debhelper (= 12.1.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-3), dpkg (= 1.19.6), dpkg-dev (= 1.19.6), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-7), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-7), gcc-8-base (= 8.3.0-7), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-7), libatomic1 (= 8.3.0-7), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-3), libaudit1 (= 1:2.8.4-3), libbinutils (= 2.31.1-16), libblkid1 (= 2.33.1-0.1), libboost-dev (= 1.67.0.1), libboost1.67-dev (= 1.67.0-13), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-7), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.6), libelf1 (= 0.176-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-7), libgcc1 (= 1:8.3.0-7), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 8.3.0-7), libgpg-error0 (= 1.35-1), libgzstream-dev (= 1.5+dfsg-4), libgzstream0 (= 1.5+dfsg-4), libicu63 (= 63.1-6), libisl19 (= 0.20-2), libitm1 (= 8.3.0-7), liblsan0 (= 8.3.0-7), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-7), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 8.3.0-7), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libstdc++-8-dev (= 8.3.0-7), libstdc++6 (= 8.3.0-7), libsystemd0 (= 241-5), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-7), libubsan1 (= 8.3.0-7), libuchardet0 (= 0.0.6-3), libudev1 (= 241-5), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 4.19.37-3), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), patch (= 2.7.6-3), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-6), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1557647469" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ pirs-dbgsym_2.0.2+dfsg-8_mipsel.deb ----------------------------------- new Debian package, version 2.0. size 404040 bytes: control archive=600 bytes. 410 bytes, 12 lines control 212 bytes, 2 lines md5sums Package: pirs-dbgsym Source: pirs Version: 2.0.2+dfsg-8 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 447 Depends: pirs (= 2.0.2+dfsg-8) Section: debug Priority: optional Description: debug symbols for pirs Build-Ids: 0a3c8e2e5bf6d2f98a08d9593559b9f043e215ff 12d90bd04f2b1c37d37e4741c35f77fba6ab363f drwxr-xr-x root/root 0 2019-05-12 07:51 ./ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/debug/.build-id/0a/ -rw-r--r-- root/root 29572 2019-05-12 07:51 ./usr/lib/debug/.build-id/0a/3c8e2e5bf6d2f98a08d9593559b9f043e215ff.debug drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/debug/.build-id/12/ -rw-r--r-- root/root 415856 2019-05-12 07:51 ./usr/lib/debug/.build-id/12/d90bd04f2b1c37d37e4741c35f77fba6ab363f.debug drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/share/doc/pirs-dbgsym -> pirs pirs_2.0.2+dfsg-8_mipsel.deb ---------------------------- new Debian package, version 2.0. size 115496 bytes: control archive=1680 bytes. 1394 bytes, 27 lines control 1528 bytes, 23 lines md5sums Package: pirs Version: 2.0.2+dfsg-8 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 403 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.2), libgomp1 (>= 4.9), libgzstream0 (>= 1.5+dfsg), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0.2), pirs-profiles, fonts-liberation, gnuplot Section: science Priority: optional Homepage: https://github.com/galaxy001/pirs Description: Profile based Illumina pair-end Reads Simulator The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias. . The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated. . The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided. . To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation. drwxr-xr-x root/root 0 2019-05-12 07:51 ./ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/bin/ lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/alignment_stator -> ../lib/pirs/alignment_stator.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_analyzer -> ../lib/pirs/baseCalling_Matrix_analyzer.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_calculator -> ../lib/pirs/baseCalling_Matrix_calculator.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_calculator.0 -> ../lib/pirs/baseCalling_Matrix_calculator.0.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_merger -> ../lib/pirs/baseCalling_Matrix_merger.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_merger.old -> ../lib/pirs/baseCalling_Matrix_merger.old.pl -rwxr-xr-x root/root 129556 2019-05-12 07:51 ./usr/bin/gc_coverage_bias lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/gc_coverage_bias_plot -> ../lib/pirs/gc_coverage_bias_plot.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/gethist -> ../lib/pirs/gethist.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/ifollowQ -> ../lib/pirs/ifollowQ.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/ifollowQmerge -> ../lib/pirs/ifollowQmerge.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/ifollowQplot -> ../lib/pirs/ifollowQplot.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/ifqQ -> ../lib/pirs/ifqQ.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/indelstat_sam_bam -> ../lib/pirs/indelstat_sam_bam.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/itilestator -> ../lib/pirs/itilestator.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/loess -> ../lib/pirs/loess.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/pifollowQmerge -> ../lib/pirs/pifollowQmerge.pl -rwxr-xr-x root/root 120900 2019-05-12 07:51 ./usr/bin/pirs drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/pirs/ -rwxr-xr-x root/root 15714 2019-05-12 07:51 ./usr/lib/pirs/alignment_stator.pl -rwxr-xr-x root/root 11244 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_analyzer.pl -rwxr-xr-x root/root 20935 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_calculator.0.pl -rwxr-xr-x root/root 19564 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_calculator.pl -rwxr-xr-x root/root 5672 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_merger.old.pl -rwxr-xr-x root/root 6280 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_merger.pl -rwxr-xr-x root/root 3231 2019-05-12 07:51 ./usr/lib/pirs/gc_coverage_bias_plot.pl -rwxr-xr-x root/root 358 2019-05-12 07:51 ./usr/lib/pirs/gethist.pl -rwxr-xr-x root/root 4055 2019-05-12 07:51 ./usr/lib/pirs/ifollowQ.pl -rwxr-xr-x root/root 3530 2019-05-12 07:51 ./usr/lib/pirs/ifollowQmerge.pl -rwxr-xr-x root/root 613 2019-05-12 07:51 ./usr/lib/pirs/ifollowQplot.pl -rwxr-xr-x root/root 1820 2019-05-12 07:51 ./usr/lib/pirs/ifqQ.pl -rwxr-xr-x root/root 7228 2019-05-12 07:51 ./usr/lib/pirs/indelstat_sam_bam.pl -rwxr-xr-x root/root 2679 2019-05-12 07:51 ./usr/lib/pirs/itilestator.pl -rwxr-xr-x root/root 1460 2016-08-14 05:10 ./usr/lib/pirs/loess.pl -rwxr-xr-x root/root 3080 2019-05-12 07:51 ./usr/lib/pirs/pifollowQmerge.pl drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/doc/pirs/ -rw-r--r-- root/root 7184 2016-08-14 05:10 ./usr/share/doc/pirs/README.gz -rw-r--r-- root/root 1011 2019-05-12 07:51 ./usr/share/doc/pirs/changelog.Debian.gz -rw-r--r-- root/root 3446 2016-08-14 05:10 ./usr/share/doc/pirs/changelog.gz -rw-r--r-- root/root 2931 2019-05-12 07:51 ./usr/share/doc/pirs/copyright -rw-r--r-- root/root 1288 2016-08-14 05:10 ./usr/share/doc/pirs/strator_readme.txt +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 59688 Build-Time: 43 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 26 Job: pirs_2.0.2+dfsg-8 Lintian: pass Machine Architecture: amd64 Package: pirs Package-Time: 80 Source-Version: 2.0.2+dfsg-8 Space: 59688 Status: successful Version: 2.0.2+dfsg-8 -------------------------------------------------------------------------------- Finished at 2019-05-25T10:13:59Z Build needed 00:01:20, 59688k disk space