sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | pirs 2.0.2+dfsg-8 (s390x) Tue, 02 Jun 2020 10:58:23 +0000 | +==============================================================================+ Package: pirs Version: 2.0.2+dfsg-8 Source Version: 2.0.2+dfsg-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-9eeaf995-652b-452f-9c76-dfd6d634be4b' with '<>' I: NOTICE: Log filtering will replace 'build/pirs-X6nCOm/resolver-jLSJsP' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-02-0802.20.pdiff [11.5 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-02-0802.20.pdiff [9380 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-06-02-0802.20.pdiff [11.5 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-06-02-0802.20.pdiff [9380 B] Get:6 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7902 kB] Fetched 8125 kB in 2s (5344 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libunistring2 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 379 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libunistring2 amd64 0.9.10-4 [379 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 379 kB in 0s (7351 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10323 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-4_amd64.deb ... Unpacking libunistring2:amd64 (0.9.10-4) over (0.9.10-3) ... Setting up libunistring2:amd64 (0.9.10-4) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pirs' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pirs.git Please use: git clone https://salsa.debian.org/med-team/pirs.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6038 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main pirs 2.0.2+dfsg-8 (dsc) [2110 B] Get:2 http://debian.oregonstate.edu/debian unstable/main pirs 2.0.2+dfsg-8 (tar) [6029 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main pirs 2.0.2+dfsg-8 (diff) [6816 B] Fetched 6038 kB in 0s (56.0 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/pirs-X6nCOm/pirs-2.0.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/pirs-X6nCOm' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libboost-dev, zlib1g-dev, libgzstream-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper (>= 11~), libboost-dev, zlib1g-dev, libgzstream-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [424 B] Get:5 copy:/<>/apt_archive ./ Packages [512 B] Fetched 1893 B in 0s (75.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdmainutils build-essential cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-9-base:s390x gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan5-s390x-cross libatomic1:s390x libatomic1-s390x-cross libboost-dev:s390x libboost1.67-dev:s390x libbsd0 libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:s390x libgcc-9-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgzstream-dev:s390x libgzstream0:s390x libicu63 libio-string-perl libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:s390x libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-s390x-linux-gnu gcc-9-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:s390x libboost1.67-doc:s390x libboost-atomic1.67-dev:s390x libboost-chrono1.67-dev:s390x libboost-container1.67-dev:s390x libboost-contract1.67-dev:s390x libboost-date-time1.67-dev:s390x libboost-exception1.67-dev:s390x libboost-filesystem1.67-dev:s390x libboost-graph1.67-dev:s390x libboost-graph-parallel1.67-dev:s390x libboost-iostreams1.67-dev:s390x libboost-locale1.67-dev:s390x libboost-log1.67-dev:s390x libboost-math1.67-dev:s390x libboost-mpi1.67-dev:s390x libboost-mpi-python1.67-dev:s390x libboost-numpy1.67-dev:s390x libboost-program-options1.67-dev:s390x libboost-python1.67-dev:s390x libboost-random1.67-dev:s390x libboost-regex1.67-dev:s390x libboost-serialization1.67-dev:s390x libboost-signals1.67-dev:s390x libboost-stacktrace1.67-dev:s390x libboost-system1.67-dev:s390x libboost-test1.67-dev:s390x libboost-thread1.67-dev:s390x libboost-timer1.67-dev:s390x libboost-type-erasure1.67-dev:s390x libboost-wave1.67-dev:s390x libboost1.67-tools-dev:s390x libmpfrc++-dev:s390x libntl-dev:s390x glibc-doc:s390x libc-l10n:s390x locales:s390x glibc-doc manpages-dev:s390x gnupg | gnupg2 git bzr libstdc++-9-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libb-debug-perl liblocale-codes-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg | gnupg2 libalgorithm-merge-perl curl | wget | lynx libidn2-0:s390x libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdmainutils build-essential cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-9 g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-9-base:s390x gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan5-s390x-cross libatomic1:s390x libatomic1-s390x-cross libboost-dev:s390x libboost1.67-dev:s390x libbsd0 libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:s390x libgcc-9-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libgzstream-dev:s390x libgzstream0:s390x libicu63 libio-string-perl libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:s390x libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 94.2 MB of archives. After this operation, 493 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.2-1 [1315 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-1 [2807 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-1 [4011 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-1 [290 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x gcc-10-base s390x 10.1.0-3 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.3.0-13 [197 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0042 [73.9 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.34-8 [1946 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-8 [2631 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-13 [1701 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-13 [10.7 MB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.19.7 [1414 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.19.7 [1773 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu-base amd64 9.3.0-13cross1 [197 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-s390x-linux-gnu amd64 9.3.0-13cross1 [6145 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-13cross1 [193 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.1.0-3cross1 [194 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.30-2cross1 [1246 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 10.1.0-3cross1 [24.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 10.1.0-3cross1 [90.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 10.1.0-3cross1 [24.9 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 10.1.0-3cross1 [7940 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 9.3.0-13cross1 [338 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 10.1.0-3cross1 [440 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 10.1.0-3cross1 [125 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-s390x-cross all 9.3.0-13cross1 [681 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu amd64 9.3.0-13cross1 [6529 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:9.2.1-3.1 [1456 B] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.4.19-1cross1 [1173 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.30-2cross1 [2207 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-s390x-cross all 9.3.0-13cross1 [1652 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-s390x-linux-gnu amd64 9.3.0-13cross1 [6729 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:9.2.1-3.1 [1176 B] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.1 [187 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.1-1 [14.9 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.3-1 [1341 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.1 [1012 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 10.1.0-3 [24.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.16-1 [89.0 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.30-8 [2465 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.3.0-13 [344 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 10.1.0-3 [8104 B] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 10.1.0-3 [92.0 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 10.1.0-3 [25.3 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 10.1.0-3 [483 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 10.1.0-3 [125 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.3.0-13 [681 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.6.14-1 [1113 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.16-1 [107 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.30-8 [2237 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.3.0-13 [1664 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libboost1.67-dev s390x 1.67.0-18 [8389 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libboost-dev s390x 1.67.0.2+b1 [4484 B] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-2 [88.9 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x libgzstream0 s390x 1.5+dfsg-4 [6592 B] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libgzstream-dev s390x 1.5+dfsg-4 [6772 B] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 94.2 MB in 1s (119 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 10323 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.2-1_amd64.deb ... Unpacking man-db (2.9.2-1) ... 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Unpacking libitm1:s390x (10.1.0-3) ... Selecting previously unselected package libstdc++6:s390x. Preparing to unpack .../093-libstdc++6_10.1.0-3_s390x.deb ... Unpacking libstdc++6:s390x (10.1.0-3) ... Selecting previously unselected package libubsan1:s390x. Preparing to unpack .../094-libubsan1_10.1.0-3_s390x.deb ... Unpacking libubsan1:s390x (10.1.0-3) ... Selecting previously unselected package libgcc-9-dev:s390x. Preparing to unpack .../095-libgcc-9-dev_9.3.0-13_s390x.deb ... Unpacking libgcc-9-dev:s390x (9.3.0-13) ... Selecting previously unselected package linux-libc-dev:s390x. Preparing to unpack .../096-linux-libc-dev_5.6.14-1_s390x.deb ... Unpacking linux-libc-dev:s390x (5.6.14-1) ... Selecting previously unselected package libcrypt-dev:s390x. Preparing to unpack .../097-libcrypt-dev_1%3a4.4.16-1_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.16-1) ... Selecting previously unselected package libc6-dev:s390x. Preparing to unpack .../098-libc6-dev_2.30-8_s390x.deb ... Unpacking libc6-dev:s390x (2.30-8) ... Selecting previously unselected package libstdc++-9-dev:s390x. Preparing to unpack .../099-libstdc++-9-dev_9.3.0-13_s390x.deb ... Unpacking libstdc++-9-dev:s390x (9.3.0-13) ... Selecting previously unselected package libboost1.67-dev:s390x. Preparing to unpack .../100-libboost1.67-dev_1.67.0-18_s390x.deb ... Unpacking libboost1.67-dev:s390x (1.67.0-18) ... Selecting previously unselected package libboost-dev:s390x. Preparing to unpack .../101-libboost-dev_1.67.0.2+b1_s390x.deb ... Unpacking libboost-dev:s390x (1.67.0.2+b1) ... Selecting previously unselected package zlib1g:s390x. Preparing to unpack .../102-zlib1g_1%3a1.2.11.dfsg-2_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.11.dfsg-2) ... Selecting previously unselected package libgzstream0:s390x. Preparing to unpack .../103-libgzstream0_1.5+dfsg-4_s390x.deb ... Unpacking libgzstream0:s390x (1.5+dfsg-4) ... Selecting previously unselected package libgzstream-dev:s390x. Preparing to unpack .../104-libgzstream-dev_1.5+dfsg-4_s390x.deb ... Unpacking libgzstream-dev:s390x (1.5+dfsg-4) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../105-zlib1g-dev_1%3a1.2.11.dfsg-2_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:s390x. Preparing to unpack .../106-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up binutils-s390x-linux-gnu (2.34-8) ... Setting up perl-modules-5.30 (5.30.3-1) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libglib2.0-0:amd64 (2.64.3-1) ... No schema files found: doing nothing. Setting up libc6-s390x-cross (2.30-2cross1) ... Setting up gcc-9-s390x-linux-gnu-base:amd64 (9.3.0-13cross1) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:s390x (5.6.14-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up libicu63:amd64 (63.2-3) ... Setting up gcc-10-base:s390x (10.1.0-3) ... Setting up autotools-dev (20180224.1) ... Setting up linux-libc-dev-s390x-cross (5.4.19-1cross1) ... Setting up cross-config (2.6.15-3) ... Setting up cpp-9-s390x-linux-gnu (9.3.0-13cross1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.3.0-13cross1) ... Setting up gcc-10-cross-base (10.1.0-3cross1) ... Setting up libitm1-s390x-cross (10.1.0-3cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libc6-dev-s390x-cross (2.30-2cross1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-1) ... Setting up libc6-dev:amd64 (2.30-8) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libgomp1-s390x-cross (10.1.0-3cross1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:s390x (9.3.0-13) ... Setting up libstdc++-9-dev:amd64 (9.3.0-13) ... Setting up cpp-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up libtool (2.4.6-14) ... Setting up libatomic1-s390x-cross (10.1.0-3cross1) ... Setting up m4 (1.4.18-4) ... Setting up perl (5.30.3-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libgcc-s1-s390x-cross (10.1.0-3cross1) ... Setting up ucf (3.0042) ... Setting up g++-9 (9.3.0-13) ... Setting up libdpkg-perl (1.19.7) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libstdc++6-s390x-cross (10.1.0-3cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libasan5-s390x-cross (9.3.0-13cross1) ... Setting up man-db (2.9.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.19.7) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up libubsan1-s390x-cross (10.1.0-3cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up libgcc-9-dev-s390x-cross (9.3.0-13cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-9-dev-s390x-cross (9.3.0-13cross1) ... Setting up gcc-9-s390x-linux-gnu (9.3.0-13cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up g++-9-s390x-linux-gnu (9.3.0-13cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-s390x (12.8) ... Setting up libcrypt1:s390x (1:4.4.16-1) ... Setting up libgcc-s1:s390x (10.1.0-3) ... Setting up dh-autoreconf (19) ... Setting up libc6:s390x (2.30-8) ... Setting up libcrypt-dev:s390x (1:4.4.16-1) ... Setting up libc6-dev:s390x (2.30-8) ... Setting up libstdc++6:s390x (10.1.0-3) ... Setting up libitm1:s390x (10.1.0-3) ... Setting up debhelper (13.1) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-2) ... Setting up libgomp1:s390x (10.1.0-3) ... Setting up libasan5:s390x (9.3.0-13) ... Setting up libatomic1:s390x (10.1.0-3) ... Setting up libgzstream0:s390x (1.5+dfsg-4) ... Setting up libubsan1:s390x (10.1.0-3) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2) ... Setting up libgzstream-dev:s390x (1.5+dfsg-4) ... Setting up libgcc-9-dev:s390x (9.3.0-13) ... Setting up libstdc++-9-dev:s390x (9.3.0-13) ... Setting up libboost1.67-dev:s390x (1.67.0-18) ... Setting up libboost-dev:s390x (1.67.0.2+b1) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2 (2020-04-29) amd64 (x86_64) Toolchain package versions: binutils_2.34-8 dpkg-dev_1.19.7 g++-9_9.3.0-13 gcc-9_9.3.0-13 libc6-dev_2.30-8 libstdc++-9-dev_9.3.0-13 libstdc++-9-dev-s390x-cross_9.3.0-13cross1 libstdc++6_10.1.0-3 libstdc++6-s390x-cross_10.1.0-3cross1 linux-libc-dev_5.6.14-1 Package versions: adduser_3.118 apt_2.1.5 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8 binutils-common_2.34-8 binutils-s390x-linux-gnu_2.34-8 binutils-x86-64-linux-gnu_2.34-8 bsdmainutils_11.1.2+b1 bsdutils_1:2.35.2-2 build-essential_12.8 bzip2_1.0.8-3 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-4 cpp-9_9.3.0-13 cpp-9-s390x-linux-gnu_9.3.0-13cross1 cpp-s390x-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-s390x_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-13 g++-9-s390x-linux-gnu_9.3.0-13cross1 g++-s390x-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10.1.0-3 gcc-10-cross-base_10.1.0-3cross1 gcc-8-base_8.4.0-4 gcc-9_9.3.0-13 gcc-9-base_9.3.0-13 gcc-9-cross-base_9.3.0-13cross1 gcc-9-s390x-linux-gnu_9.3.0-13cross1 gcc-9-s390x-linux-gnu-base_9.3.0-13cross1 gcc-s390x-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.5 libarchive-zip-perl_1.68-1 libasan5_9.3.0-13 libasan5-s390x-cross_9.3.0-13cross1 libatomic1_10.1.0-3 libatomic1-s390x-cross_10.1.0-3cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34-8 libblkid1_2.35.2-2 libboost-dev_1.67.0.2+b1 libboost1.67-dev_1.67.0-18 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-3 libc-bin_2.30-8 libc-dev-bin_2.30-8 libc6_2.30-8 libc6-dev_2.30-8 libc6-dev-s390x-cross_2.30-2cross1 libc6-s390x-cross_2.30-2cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10.1.0-3 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8 libctf0_2.34-8 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-2 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.8.1-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-13 libgcc-9-dev-s390x-cross_9.3.0-13cross1 libgcc-s1_10.1.0-3 libgcc-s1-s390x-cross_10.1.0-3cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.3-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-4 libgomp1_10.1.0-3 libgomp1-s390x-cross_10.1.0-3cross1 libgpg-error0_1.37-1 libgzstream-dev_1.5+dfsg-4 libgzstream0_1.5+dfsg-4 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.1.0-3 libitm1-s390x-cross_10.1.0-3cross1 liblocale-gettext-perl_1.07-4 liblsan0_10.1.0-3 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.3-1 libpipeline1_1.5.2-2 libquadmath0_10.1.0-3 libseccomp2_2.4.3-1+b1 libselinux1_3.0-1+b3 libsemanage-common_3.0-1 libsemanage1_3.0-1+b3 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.2-2 libss2_1.45.6-1 libstdc++-9-dev_9.3.0-13 libstdc++-9-dev-s390x-cross_9.3.0-13cross1 libstdc++6_10.1.0-3 libstdc++6-s390x-cross_10.1.0-3cross1 libsub-override-perl_0.09-2 libsystemd0_245.5-3 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-3 libubsan1_10.1.0-3 libubsan1-s390x-cross_10.1.0-3cross1 libuchardet0_0.0.7-1 libudev1_245.5-3 libunistring2_0.9.10-4 libuuid1_2.35.2-2 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.6.14-1 linux-libc-dev-s390x-cross_5.4.19-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-1 man-db_2.9.2-1 mawk_1.3.4.20200120-2 mount_2.35.2-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-1 perl-base_5.30.3-1 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-1 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0042 util-linux_2.35.2-2 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pirs Binary: pirs, pirs-profiles, pirs-examples Architecture: any all Version: 2.0.2+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/galaxy001/pirs Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/pirs Vcs-Git: https://salsa.debian.org/med-team/pirs.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), libboost-dev, zlib1g-dev, libgzstream-dev Package-List: pirs deb science optional arch=any pirs-examples deb science optional arch=all pirs-profiles deb science optional arch=all Checksums-Sha1: f7ad7b1afb04ddb941cf2aa00a368ee61883fcdd 6029204 pirs_2.0.2+dfsg.orig.tar.xz 6b6b345f0af7dd1c498bda5b8ef229cb2414aa20 6816 pirs_2.0.2+dfsg-8.debian.tar.xz Checksums-Sha256: ef7ed1400dafd06f29a699023f0ecdcd52e0073254c87646c4ecea803e4b1d93 6029204 pirs_2.0.2+dfsg.orig.tar.xz 2b66dbb6966ac14457a369196d666b93870b305a6c41bde36265e4d817bf1b49 6816 pirs_2.0.2+dfsg-8.debian.tar.xz Files: 1ee1373ad8b358f61adc8429645f946d 6029204 pirs_2.0.2+dfsg.orig.tar.xz 597d56f3a1be505292e53575e77212bd 6816 pirs_2.0.2+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlzZE0MOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtEydg//ahtxk/fdrIIMVeeEiQG3KGv2mmK267fGJ2dH 0VQWpWEUIVQHTUGY9iNOP9Qzn0tbX1PYFGiIyKLUc5xJDoyC0BuSHPt3NufqnvzH 0v2Deh5iDqBvQHpWExiyBuOTWpJfPPCI/iIrA4Re1uxtFJrWT+zmjwQmyLi7vdsJ JSFOQlG7RP7HdNWaQznTenKHjsSsaWjnDo3p3pY8l8Mw+DtDSsAL2n0qoeB5/AgD tx/BLWcUIMEAb9Qu+5gMxhDlrTg5Y8pEKs0HKPkEHlCPIwB07kplMMDCeEqinJcD Re7oUPzXG3eIUex5fpg7ONObihw2CerCB7aIYQPizvnY2qQHpR0VlGao573P+6NV Kx0ea6Mf3RlH5+Vfjpnlpsko6W9rPLJBM1o4ZmihiEyXcIotSyhYmLv89PfO57Hk VQAFjJn80W4WVbb1+egAFD2b/l6evio0KcNUkhCjgXHP3hOhL3VE5TmJ8gTrLWyc rYRYx9QQ4S+7IzU0gsZYbTzOfmEmhoWQtsyXanZ6gy3I+HdBkVTWQ9lFauGH/qjz ffzSuSUzn/W+aqkjyz5S++iiAQy1Eok39coP8pHXh4dykvAmLec7XtYvu8VJf2bL DnP5syw5AXLTphKD4HYbyo3aO3WOiCN/qM5VWjT23lbbMJH21v7GYOUB32BNGkCN t2WLgPA= =6Fg8 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon May 13 06:48:35 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pirs_2.0.2+dfsg-8.dsc dpkg-source: info: extracting pirs in /<> dpkg-source: info: unpacking pirs_2.0.2+dfsg.orig.tar.xz dpkg-source: info: unpacking pirs_2.0.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libgzstream.patch dpkg-source: info: applying Fix-spelling-of-sse2-option.patch dpkg-source: info: applying do_not_seek_for_arial.ttf.patch dpkg-source: info: applying Remove-mtune-compiler-flag.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-9eeaf995-652b-452f-9c76-dfd6d634be4b SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package pirs dpkg-buildpackage: info: source version 2.0.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean cd src && ./srclean.sh >/dev/null 2>/dev/null || true make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' cd src && \ mv INSTALL INSTALL.save && \ autoreconf --install && \ mv INSTALL.save INSTALL && \ cd /<> configure.ac:9: installing './compile' configure.ac:3: installing './install-sh' configure.ac:3: installing './missing' Makefile.am: installing './INSTALL' pirs/Makefile.am:28: warning: source file 'SFMT-src-1.4/SFMT.c' is in a subdirectory, pirs/Makefile.am:28: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. pirs/Makefile.am: installing './depcomp' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-pirs-diploid --disable-sse2 cd src && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --enable-pirs-diploid --disable-sse2 configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of s390x-linux-gnu-g++... none checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to accept ISO C89... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... none checking for gzopen in -lz... yes checking Whether to include support for 'pirs diploid' command... yes checking Whether to include support for 'pirs simulate' command... yes checking Whether to include support for multiple threads... yes checking for s390x-linux-gnu-g++ option to support OpenMP... -fopenmp checking Whether to include support for SSE2 instructions... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating pirs/Makefile config.status: creating config.h config.status: executing depfiles commands make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build cd src && make -j1 make[2]: Entering directory '/<>/src' (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /<>/src/missing autoheader) rm -f stamp-h1 touch config.h.in cd . && /bin/bash ./config.status config.h config.status: creating config.h config.status: config.h is unchanged make all-recursive make[3]: Entering directory '/<>/src' Making all in pirs make[4]: Entering directory '/<>/src/pirs' s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o InputStream.o InputStream.cpp In file included from InputStream.cpp:1: InputStream.h: In constructor ‘InputStream::InputStream()’: InputStream.h:50:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ InputStream.h: In constructor ‘InputStream::InputStream(const char*)’: InputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o OutputStream.o OutputStream.cpp In file included from OutputStream.cpp:1: OutputStream.h: In constructor ‘OutputStream::OutputStream()’: OutputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’: OutputStream.h:58:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 58 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp main.cpp:18:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 18 | "Compile Date: " __DATE__ " time: " __TIME__ "\n" | ^~~~~~~~ main.cpp:18:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 18 | "Compile Date: " __DATE__ " time: " __TIME__ "\n" | ^~~~~~~~ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.o util.cpp In file included from util.cpp:18: InputStream.h: In constructor ‘InputStream::InputStream()’: InputStream.h:50:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ InputStream.h: In constructor ‘InputStream::InputStream(const char*)’: InputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937-64.o mt19937-64.cpp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_diploid.o pirs_diploid.cpp pirs_diploid.cpp:639:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 639 | info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n", | ^ pirs_diploid.cpp:639:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 639 | info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n", | ^ pirs_diploid.cpp:639:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 639 | info(" [%#"PRIx64", %#"PRIx64", %#"PRIx64"\n", | ^ pirs_diploid.cpp:641:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 641 | info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n", | ^ pirs_diploid.cpp:641:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 641 | info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n", | ^ pirs_diploid.cpp:641:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 641 | info(" %#"PRIx64", %#"PRIx64", %#"PRIx64"\n", | ^ pirs_diploid.cpp:643:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 643 | info(" %#"PRIx64"]\n", het_type_tab[6]); | ^ In file included from pirs_diploid.cpp:11: InputStream.h: In constructor ‘InputStream::InputStream()’: InputStream.h:50:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ InputStream.h: In constructor ‘InputStream::InputStream(const char*)’: InputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ In file included from pirs_diploid.cpp:12: OutputStream.h: In constructor ‘OutputStream::OutputStream()’: OutputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’: OutputStream.h:58:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 58 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaseCallingProfile.o BaseCallingProfile.cpp In file included from SimulationParameters.h:6, from BaseCallingProfile.h:7, from BaseCallingProfile.cpp:5: InputStream.h: In constructor ‘InputStream::InputStream()’: InputStream.h:50:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ InputStream.h: In constructor ‘InputStream::InputStream(const char*)’: InputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ In file included from SimulationParameters.h:7, from BaseCallingProfile.h:7, from BaseCallingProfile.cpp:5: OutputStream.h: In constructor ‘OutputStream::OutputStream()’: OutputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’: OutputStream.h:58:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 58 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GCBiasProfile.o GCBiasProfile.cpp In file included from SimulationParameters.h:6, from GCBiasProfile.h:5, from GCBiasProfile.cpp:5: InputStream.h: In constructor ‘InputStream::InputStream()’: InputStream.h:50:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ InputStream.h: In constructor ‘InputStream::InputStream(const char*)’: InputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ In file included from SimulationParameters.h:7, from GCBiasProfile.h:5, from GCBiasProfile.cpp:5: OutputStream.h: In constructor ‘OutputStream::OutputStream()’: OutputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’: OutputStream.h:58:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 58 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IndelProfile.o IndelProfile.cpp In file included from SimulationParameters.h:6, from IndelProfile.cpp:2: InputStream.h: In constructor ‘InputStream::InputStream()’: InputStream.h:50:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ InputStream.h: In constructor ‘InputStream::InputStream(const char*)’: InputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ In file included from SimulationParameters.h:7, from IndelProfile.cpp:2: OutputStream.h: In constructor ‘OutputStream::OutputStream()’: OutputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’: OutputStream.h:58:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 58 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MaskQvalsByEamss.o MaskQvalsByEamss.cpp s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Profile.o Profile.cpp In file included from Profile.cpp:2: InputStream.h: In constructor ‘InputStream::InputStream()’: InputStream.h:50:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ InputStream.h: In constructor ‘InputStream::InputStream(const char*)’: InputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR='"/usr/share/pirs"' -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pirs_simulate.o pirs_simulate.cpp pirs_simulate.cpp:168:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 168 | " "DEFAULT_BASE_CALLING_PROFILE"\n" | ^ pirs_simulate.cpp:174:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 174 | " "DEFAULT_INDEL_PROFILE"\n" | ^ pirs_simulate.cpp:180:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | " "DEFAULT_GC_BIAS_PROFILE_100",\n" | ^ pirs_simulate.cpp:181:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | " "DEFAULT_GC_BIAS_PROFILE_150",\n" | ^ pirs_simulate.cpp:182:1: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | " "DEFAULT_GC_BIAS_PROFILE_200",\n" | ^ pirs_simulate.cpp:672:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 672 | out_file.printf("%cread_%d_%"PRIu64"/%d\n", | ^ pirs_simulate.cpp:700:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 700 | info_log_file.printf("read_%d_%"PRIu64"/%d\t%s\t%s\t%zu\t%c\t%d\t%d\t", | ^ pirs_simulate.cpp:1235:10: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1235 | info("Simulated %"PRIu64" of %"PRIu64" read pairs\n", | ^ pirs_simulate.cpp:1235:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1235 | info("Simulated %"PRIu64" of %"PRIu64" read pairs\n", | ^ pirs_simulate.cpp:1540:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1540 | insert_log.printf("%d\t%"PRIu64"\n", it->first, it->second); | ^ pirs_simulate.cpp:1557:2: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1557 | "# The total number of read pairs that were simulated was %"PRIu64".\n" | ^ pirs_simulate.cpp:1574:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1574 | error_log.printf("%d\t%"PRIu64"\t%g\n", | ^ pirs_simulate.cpp:1579:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1579 | error_log.printf("total\t%"PRIu64"\t%g\n", | ^ pirs_simulate.cpp:1685:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1685 | log_parameter(info_log, "Random seed: %"PRIu64"\n", | ^ pirs_simulate.cpp:1713:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1713 | info("Program: "PROGRAM "\n"); | ^ pirs_simulate.cpp:1714:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1714 | info("Version: "VERSION "\n"); | ^ pirs_simulate.cpp:1715:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1715 | info("Author: "AUTHOR "\n"); | ^ pirs_simulate.cpp:1716:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1716 | info("Contact: "CONTACT "\n"); | ^ pirs_simulate.cpp:1717:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1717 | info("Compile Date: "__DATE__ " time: " __TIME__ "\n"); | ^ pirs_simulate.cpp:1717:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1717 | info("Compile Date: "__DATE__ " time: " __TIME__ "\n"); | ^~~~~~~~ pirs_simulate.cpp:1717:44: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 1717 | info("Compile Date: "__DATE__ " time: " __TIME__ "\n"); | ^~~~~~~~ pirs_simulate.cpp:1764:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1764 | info("Bases in reference sequences: %"PRIu64"\n", | ^ pirs_simulate.cpp:1766:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1766 | info("Read pairs simulated: %"PRIu64"\n", | ^ pirs_simulate.cpp:1768:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1768 | info("Bases in reads: %"PRIu64"\n", | ^ pirs_simulate.cpp:1773:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1773 | info("Substitution error count: %"PRIu64"\n", | ^ pirs_simulate.cpp:1777:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1777 | info("Insertion count: %"PRIu64"\n", | ^ pirs_simulate.cpp:1779:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1779 | info("Deletion count: %"PRIu64"\n", | ^ pirs_simulate.cpp:1795:7: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1795 | info("Bases masked by EAMSS algorithm: %"PRIu64"\n", counters.masked_bases); | ^ pirs_simulate.cpp:1856:8: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1856 | info("Note: A random seed (%"PRIu64") was specified on the command line.\n", | ^ In file included from SimulationParameters.h:6, from BaseCallingProfile.h:7, from pirs_simulate.cpp:14: InputStream.h: In constructor ‘InputStream::InputStream()’: InputStream.h:50:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 50 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ InputStream.h: In constructor ‘InputStream::InputStream(const char*)’: InputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class InputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ InputStream.h:25:7: note: ‘class InputStream’ declared here 25 | class InputStream { | ^~~~~~~~~~~ In file included from SimulationParameters.h:7, from BaseCallingProfile.h:7, from pirs_simulate.cpp:14: OutputStream.h: In constructor ‘OutputStream::OutputStream()’: OutputStream.h:54:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 54 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ OutputStream.h: In constructor ‘OutputStream::OutputStream(const char*, OutputType)’: OutputStream.h:58:32: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class OutputStream’; use assignment or value-initialization instead [-Wclass-memaccess] 58 | memset(this, 0, sizeof(*this)); | ^ OutputStream.h:33:7: note: ‘class OutputStream’ declared here 33 | class OutputStream { | ^~~~~~~~~~~~ s390x-linux-gnu-g++ -Wall -Wextra -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pirs InputStream.o OutputStream.o main.o util.o mt19937-64.o pirs_diploid.o BaseCallingProfile.o GCBiasProfile.o IndelProfile.o MaskQvalsByEamss.o Profile.o pirs_simulate.o -lz -lz make[4]: Leaving directory '/<>/src/pirs' make[4]: Entering directory '/<>/src' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' dh_auto_build --sourcedirectory=src/stator/gcContCvgBias -- CC='$(CXX)' cd src/stator/gcContCvgBias && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=s390x-linux-gnu-pkg-config CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc CC=\$\(CXX\) make[2]: Entering directory '/<>/src/stator/gcContCvgBias' s390x-linux-gnu-g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal self_util.cpp self_util.h self_util.cpp: In function ‘char toUpper(const char&)’: self_util.cpp:182:1: warning: control reaches end of non-void function [-Wreturn-type] 182 | } | ^ self_util.cpp: In function ‘char toLower(const char&)’: self_util.cpp:190:1: warning: control reaches end of non-void function [-Wreturn-type] 190 | } | ^ s390x-linux-gnu-g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal main.cpp s390x-linux-gnu-g++ -c -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal stat_soap_coverage.h stat_soap_coverage.cpp s390x-linux-gnu-g++ -o gc_coverage_bias -O3 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wfloat-equal self_util.o main.o stat_soap_coverage.o -Wl,-z,relro -Wl,-z,now -lgzstream -lz make[2]: Leaving directory '/<>/src/stator/gcContCvgBias' make[1]: Leaving directory '/<>' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --sourcedirectory=src/stator/gcContCvgBias make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mkdir -p debian/pirs/usr/lib/pirs find src -name "*.pl" -exec cp -a \{\} debian/pirs/usr/lib/pirs \; rm -f debian/pirs/usr/lib/pirs/autobam.pl # Fix perl interpreter path for pl in `grep -Rl '#![/usr]*/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![/usr]*/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' debian/rules override_dh_installdocs-arch make[1]: Entering directory '/<>' dh_installdocs -a cp -a src/stator/readme.txt debian/pirs/usr/share/doc/pirs/strator_readme.txt make[1]: Leaving directory '/<>' debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS make[1]: Leaving directory '/<>' dh_installinit -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link-arch make[1]: Entering directory '/<>' dh_link -a for pl in debian/pirs/usr/lib/pirs/*.pl ; do \ plname=`basename ${pl}` ; \ ln -s ../lib/pirs/${plname} debian/pirs/usr/bin/`basename ${plname} .pl` ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/*/usr/lib -name "*.pl" -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: package pirs: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package pirs: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'pirs' in '../pirs_2.0.2+dfsg-8_s390x.deb'. dpkg-deb: building package 'pirs-dbgsym' in '../pirs-dbgsym_2.0.2+dfsg-8_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../pirs_2.0.2+dfsg-8_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-06-02T10:59:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ pirs_2.0.2+dfsg-8_s390x.changes: -------------------------------- Format: 1.8 Date: Sun, 12 May 2019 09:51:09 +0200 Source: pirs Binary: pirs pirs-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 2.0.2+dfsg-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Helmut Grohne Description: pirs - Profile based Illumina pair-end Reads Simulator Closes: 928856 Changes: pirs (2.0.2+dfsg-8) unstable; urgency=medium . * Team upload. * Fix FTCBFS: (Closes: #928856) + Let dh_auto_build pass cross tools to make. + Pass C++ compiler as CC. Checksums-Sha1: 2bf701d05748a003ac9340f8b77fa5740633c52b 416728 pirs-dbgsym_2.0.2+dfsg-8_s390x.deb b4619434a8f79d9b0744528e4e100c15026f9cd6 4700 pirs_2.0.2+dfsg-8_s390x.buildinfo 5b2dd8e0fc991cbcf5a4fc2c4e6ab2e05beaeba3 106552 pirs_2.0.2+dfsg-8_s390x.deb Checksums-Sha256: 03da6044241df2ef0fdbf7ea2147bb84b5c907fa82a57164670223f1dac53c64 416728 pirs-dbgsym_2.0.2+dfsg-8_s390x.deb 4d97cdd912ffa01231c1b22ab90328685a395eb29f6e9a1ee55299f285cb6bde 4700 pirs_2.0.2+dfsg-8_s390x.buildinfo f2037372072adcf4564b125bbf08ec3cc622593bb93985cd1b1a8f70cbc2920f 106552 pirs_2.0.2+dfsg-8_s390x.deb Files: 02ea19c05a89d1a8d5bf380307e9a792 416728 debug optional pirs-dbgsym_2.0.2+dfsg-8_s390x.deb 4a70917e9dfe73abee7df381897bea34 4700 science optional pirs_2.0.2+dfsg-8_s390x.buildinfo c87c2146620b1e7231c8f22633ae1be0 106552 science optional pirs_2.0.2+dfsg-8_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: pirs Binary: pirs pirs-profiles pirs-examples Architecture: s390x Version: 2.0.2+dfsg-8 Checksums-Md5: 02ea19c05a89d1a8d5bf380307e9a792 416728 pirs-dbgsym_2.0.2+dfsg-8_s390x.deb c87c2146620b1e7231c8f22633ae1be0 106552 pirs_2.0.2+dfsg-8_s390x.deb Checksums-Sha1: 2bf701d05748a003ac9340f8b77fa5740633c52b 416728 pirs-dbgsym_2.0.2+dfsg-8_s390x.deb 5b2dd8e0fc991cbcf5a4fc2c4e6ab2e05beaeba3 106552 pirs_2.0.2+dfsg-8_s390x.deb Checksums-Sha256: 03da6044241df2ef0fdbf7ea2147bb84b5c907fa82a57164670223f1dac53c64 416728 pirs-dbgsym_2.0.2+dfsg-8_s390x.deb f2037372072adcf4564b125bbf08ec3cc622593bb93985cd1b1a8f70cbc2920f 106552 pirs_2.0.2+dfsg-8_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 02 Jun 2020 10:59:27 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-8), binutils-common (= 2.34-8), binutils-x86-64-linux-gnu (= 2.34-8), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.35.2-2), build-essential (= 12.8), bzip2 (= 1.0.8-3), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-13), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.1), debianutils (= 4.11), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.1-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-13), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10.1.0-3), gcc-9 (= 9.3.0-13), gcc-9-base (= 9.3.0-13), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-13), libatomic1 (= 10.1.0-3), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34-8), libblkid1 (= 2.35.2-2), libboost-dev (= 1.67.0.2+b1), libboost1.67-dev (= 1.67.0-18), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-3), libc-bin (= 2.30-8), libc-dev-bin (= 2.30-8), libc6 (= 2.30-8), libc6-dev (= 2.30-8), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10.1.0-3), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34-8), libctf0 (= 2.34-8), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.252), libdebhelper-perl (= 13.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.1-1), libgcc-9-dev (= 9.3.0-13), libgcc-s1 (= 10.1.0-3), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.3-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10.1.0-3), libgpg-error0 (= 1.37-1), libgzstream-dev (= 1.5+dfsg-4), libgzstream0 (= 1.5+dfsg-4), libicu63 (= 63.2-3), libisl22 (= 0.22.1-1), libitm1 (= 10.1.0-3), liblsan0 (= 10.1.0-3), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.35.2-2), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.3-1), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10.1.0-3), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.0-1+b3), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.35.2-2), libstdc++-9-dev (= 9.3.0-13), libstdc++6 (= 10.1.0-3), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.5-3), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.1.0-3), libubsan1 (= 10.1.0-3), libuchardet0 (= 0.0.7-1), libudev1 (= 245.5-3), libunistring2 (= 0.9.10-4), libuuid1 (= 2.35.2-2), libxml2 (= 2.9.10+dfsg-5), linux-libc-dev (= 5.6.14-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-1), man-db (= 2.9.2-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-1), perl-base (= 5.30.3-1), perl-modules-5.30 (= 5.30.3-1), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.35.2-2), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1557647469" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ pirs-dbgsym_2.0.2+dfsg-8_s390x.deb ---------------------------------- new Debian package, version 2.0. size 416728 bytes: control archive=596 bytes. 409 bytes, 12 lines control 212 bytes, 2 lines md5sums Package: pirs-dbgsym Source: pirs Version: 2.0.2+dfsg-8 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 457 Depends: pirs (= 2.0.2+dfsg-8) Section: debug Priority: optional Description: debug symbols for pirs Build-Ids: 0066ff0203048a650f1c74f4824fb39d5431f40b 9336b8d9f644325360571b776d508e484ce4ee16 drwxr-xr-x root/root 0 2019-05-12 07:51 ./ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/debug/.build-id/00/ -rw-r--r-- root/root 429384 2019-05-12 07:51 ./usr/lib/debug/.build-id/00/66ff0203048a650f1c74f4824fb39d5431f40b.debug drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/debug/.build-id/93/ -rw-r--r-- root/root 26600 2019-05-12 07:51 ./usr/lib/debug/.build-id/93/36b8d9f644325360571b776d508e484ce4ee16.debug drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/share/doc/pirs-dbgsym -> pirs pirs_2.0.2+dfsg-8_s390x.deb --------------------------- new Debian package, version 2.0. size 106552 bytes: control archive=1680 bytes. 1394 bytes, 27 lines control 1528 bytes, 23 lines md5sums Package: pirs Version: 2.0.2+dfsg-8 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 383 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libgzstream0 (>= 1.5+dfsg), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0.2), pirs-profiles, fonts-liberation, gnuplot Section: science Priority: optional Homepage: https://github.com/galaxy001/pirs Description: Profile based Illumina pair-end Reads Simulator The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias. . The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated. . The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided. . To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation. drwxr-xr-x root/root 0 2019-05-12 07:51 ./ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/bin/ lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/alignment_stator -> ../lib/pirs/alignment_stator.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_analyzer -> ../lib/pirs/baseCalling_Matrix_analyzer.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_calculator -> ../lib/pirs/baseCalling_Matrix_calculator.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_calculator.0 -> ../lib/pirs/baseCalling_Matrix_calculator.0.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_merger -> ../lib/pirs/baseCalling_Matrix_merger.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/baseCalling_Matrix_merger.old -> ../lib/pirs/baseCalling_Matrix_merger.old.pl -rwxr-xr-x root/root 121136 2019-05-12 07:51 ./usr/bin/gc_coverage_bias lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/gc_coverage_bias_plot -> ../lib/pirs/gc_coverage_bias_plot.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/gethist -> ../lib/pirs/gethist.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/ifollowQ -> ../lib/pirs/ifollowQ.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/ifollowQmerge -> ../lib/pirs/ifollowQmerge.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/ifollowQplot -> ../lib/pirs/ifollowQplot.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/ifqQ -> ../lib/pirs/ifqQ.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/indelstat_sam_bam -> ../lib/pirs/indelstat_sam_bam.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/itilestator -> ../lib/pirs/itilestator.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/loess -> ../lib/pirs/loess.pl lrwxrwxrwx root/root 0 2019-05-12 07:51 ./usr/bin/pifollowQmerge -> ../lib/pirs/pifollowQmerge.pl -rwxr-xr-x root/root 108752 2019-05-12 07:51 ./usr/bin/pirs drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/lib/pirs/ -rwxr-xr-x root/root 15714 2019-05-12 07:51 ./usr/lib/pirs/alignment_stator.pl -rwxr-xr-x root/root 11244 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_analyzer.pl -rwxr-xr-x root/root 20935 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_calculator.0.pl -rwxr-xr-x root/root 19564 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_calculator.pl -rwxr-xr-x root/root 5672 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_merger.old.pl -rwxr-xr-x root/root 6280 2019-05-12 07:51 ./usr/lib/pirs/baseCalling_Matrix_merger.pl -rwxr-xr-x root/root 3231 2019-05-12 07:51 ./usr/lib/pirs/gc_coverage_bias_plot.pl -rwxr-xr-x root/root 358 2019-05-12 07:51 ./usr/lib/pirs/gethist.pl -rwxr-xr-x root/root 4055 2019-05-12 07:51 ./usr/lib/pirs/ifollowQ.pl -rwxr-xr-x root/root 3530 2019-05-12 07:51 ./usr/lib/pirs/ifollowQmerge.pl -rwxr-xr-x root/root 613 2019-05-12 07:51 ./usr/lib/pirs/ifollowQplot.pl -rwxr-xr-x root/root 1820 2019-05-12 07:51 ./usr/lib/pirs/ifqQ.pl -rwxr-xr-x root/root 7228 2019-05-12 07:51 ./usr/lib/pirs/indelstat_sam_bam.pl -rwxr-xr-x root/root 2679 2019-05-12 07:51 ./usr/lib/pirs/itilestator.pl -rwxr-xr-x root/root 1460 2016-08-14 05:10 ./usr/lib/pirs/loess.pl -rwxr-xr-x root/root 3080 2019-05-12 07:51 ./usr/lib/pirs/pifollowQmerge.pl drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-05-12 07:51 ./usr/share/doc/pirs/ -rw-r--r-- root/root 7184 2016-08-14 05:10 ./usr/share/doc/pirs/README.gz -rw-r--r-- root/root 1011 2019-05-12 07:51 ./usr/share/doc/pirs/changelog.Debian.gz -rw-r--r-- root/root 3446 2016-08-14 05:10 ./usr/share/doc/pirs/changelog.gz -rw-r--r-- root/root 2931 2019-05-12 07:51 ./usr/share/doc/pirs/copyright -rw-r--r-- root/root 1288 2016-08-14 05:10 ./usr/share/doc/pirs/strator_readme.txt lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [554 B] Get:5 copy:/<>/apt_archive ./ Packages [640 B] Fetched 2157 B in 0s (84.9 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: libclass-xsaccessor-perl : Depends: perl (< 5.30.3~) but 5.30.3-1 is to be installed E: Unable to correct problems, you have held broken packages. apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 61820 Build-Time: 36 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 19 Job: pirs_2.0.2+dfsg-8 Lintian: error Machine Architecture: amd64 Package: pirs Package-Time: 65 Source-Version: 2.0.2+dfsg-8 Space: 61820 Status: successful Version: 2.0.2+dfsg-8 -------------------------------------------------------------------------------- Finished at 2020-06-02T10:59:28Z Build needed 00:01:05, 61820k disk space