sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | pizzly 0.37.3+ds-9 (s390x) Sun, 29 Jan 2023 18:32:19 +0000 | +==============================================================================+ Package: pizzly Version: 0.37.3+ds-9 Source Version: 0.37.3+ds-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-6d055d89-c24a-49f8-9897-6dcba1e527ec' with '<>' I: NOTICE: Log filtering will replace 'build/pizzly-UyWBaB/resolver-WMCder' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [167 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-01-29-1406.37-F-2023-01-29-0205.32.pdiff [42.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-01-29-1406.37-F-2023-01-29-0205.32.pdiff [118 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-01-29-1406.37-F-2023-01-29-0205.32.pdiff [42.2 kB] Get:6 http://localhost:3142/debian sid/main s390x Packages [9026 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-01-29-1406.37-F-2023-01-29-0205.32.pdiff [118 kB] Fetched 9481 kB in 2s (3874 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pizzly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pizzly.git Please use: git clone https://salsa.debian.org/med-team/pizzly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 270 kB of source archives. Get:1 http://localhost:3142/debian sid/main pizzly 0.37.3+ds-9 (dsc) [2023 B] Get:2 http://localhost:3142/debian sid/main pizzly 0.37.3+ds-9 (tar) [262 kB] Get:3 http://localhost:3142/debian sid/main pizzly 0.37.3+ds-9 (diff) [5308 B] Fetched 270 kB in 1s (423 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/pizzly-UyWBaB/pizzly-0.37.3+ds' with '<>' I: NOTICE: Log filtering will replace 'build/pizzly-UyWBaB' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [434 B] Get:5 copy:/<>/apt_archive ./ Packages [522 B] Fetched 1913 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cmake cmake-data cpp-12-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-12-base:s390x gcc-12-cross-base gcc-12-s390x-linux-gnu gcc-12-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base help2man intltool-debian kallisto:s390x libarchive-zip-perl libarchive13 libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1 libbrotli1:s390x libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4 libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:s390x libelf1 libexpat1 libffi8:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-12-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhts3:s390x libhtscodecs2:s390x libicu72 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libjsoncpp25 libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.5-0 libldap-2.5-0:s390x liblocale-gettext-perl liblzma5:s390x libmagic-mgc libmagic1 libncursesw6 libnettle8:s390x libnghttp2-14 libnghttp2-14:s390x libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libpipeline1 libproc2-0 libpsl5 libpsl5:s390x librhash0 librtmp1 librtmp1:s390x libsasl2-2 libsasl2-2:s390x libsasl2-modules-db libsasl2-modules-db:s390x libseqan2-dev libssh2-1 libssh2-1:s390x libssl3:s390x libstdc++-11-dev:s390x libstdc++-12-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:s390x linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf procps sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-s390x-linux-gnu gcc-12-doc gcc-12-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x gnutls-bin:s390x krb5-doc:s390x krb5-user:s390x libstdc++-11-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:s390x ca-certificates libarchive-cpio-perl krb5-locales:s390x libldap-common libldap-common:s390x libgpm2 publicsuffix publicsuffix:s390x libsasl2-modules libsasl2-modules:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cmake cmake-data cpp-12-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-12-base:s390x gcc-12-cross-base gcc-12-s390x-linux-gnu gcc-12-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base help2man intltool-debian kallisto:s390x libarchive-zip-perl libarchive13 libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1 libbrotli1:s390x libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4 libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:s390x libelf1 libexpat1 libffi8:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-12-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhts3:s390x libhtscodecs2:s390x libicu72 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libjsoncpp25 libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.5-0 libldap-2.5-0:s390x liblocale-gettext-perl liblzma5:s390x libmagic-mgc libmagic1 libncursesw6 libnettle8:s390x libnghttp2-14 libnghttp2-14:s390x libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libpipeline1 libproc2-0 libpsl5 libpsl5:s390x librhash0 librtmp1 librtmp1:s390x libsasl2-2 libsasl2-2:s390x libsasl2-modules-db libsasl2-modules-db:s390x libseqan2-dev libssh2-1 libssh2-1:s390x libssl3:s390x libstdc++-11-dev:s390x libstdc++-12-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:s390x linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 101 MB of archives. After this operation, 390 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:3 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4-2 [134 kB] Get:4 http://localhost:3142/debian sid/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get:5 http://localhost:3142/debian sid/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get:6 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:7 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:9 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:10 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-10 [160 kB] Get:11 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:12 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-9 [916 kB] Get:13 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-4 [86.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:15 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-1 [1386 kB] Get:16 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:17 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-2 [287 kB] Get:18 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:19 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-10 [495 kB] Get:22 http://localhost:3142/debian sid/main amd64 binutils-s390x-linux-gnu amd64 2.40-2 [2421 kB] Get:23 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:24 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB] Get:25 http://localhost:3142/debian sid/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get:26 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:27 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:28 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:29 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-3 [183 kB] Get:30 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.51.0-1 [71.5 kB] Get:31 http://localhost:3142/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:32 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:33 http://localhost:3142/debian sid/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:34 http://localhost:3142/debian sid/main amd64 libcurl4 amd64 7.87.0-2 [376 kB] Get:35 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:36 http://localhost:3142/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get:37 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get:38 http://localhost:3142/debian sid/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get:39 http://localhost:3142/debian sid/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get:40 http://localhost:3142/debian sid/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get:41 http://localhost:3142/debian sid/main amd64 gcc-12-s390x-linux-gnu-base amd64 12.2.0-14cross1 [37.7 kB] Get:42 http://localhost:3142/debian sid/main amd64 cpp-12-s390x-linux-gnu amd64 12.2.0-14cross1 [7795 kB] Get:43 http://localhost:3142/debian sid/main amd64 cpp-s390x-linux-gnu amd64 4:12.2.0-3 [3976 B] Get:44 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:45 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-14cross1 [33.2 kB] Get:46 http://localhost:3142/debian sid/main amd64 libc6-s390x-cross all 2.36-8cross1 [1003 kB] Get:47 http://localhost:3142/debian sid/main amd64 libgcc-s1-s390x-cross all 12.2.0-14cross1 [24.7 kB] Get:48 http://localhost:3142/debian sid/main amd64 libgomp1-s390x-cross all 12.2.0-14cross1 [103 kB] Get:49 http://localhost:3142/debian sid/main amd64 libitm1-s390x-cross all 12.2.0-14cross1 [24.8 kB] Get:50 http://localhost:3142/debian sid/main amd64 libatomic1-s390x-cross all 12.2.0-14cross1 [7808 B] Get:51 http://localhost:3142/debian sid/main amd64 libasan8-s390x-cross all 12.2.0-14cross1 [2067 kB] Get:52 http://localhost:3142/debian sid/main amd64 libstdc++6-s390x-cross all 12.2.0-14cross1 [571 kB] Get:53 http://localhost:3142/debian sid/main amd64 libubsan1-s390x-cross all 12.2.0-14cross1 [850 kB] Get:54 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-s390x-cross all 12.2.0-14cross1 [714 kB] Get:55 http://localhost:3142/debian sid/main amd64 gcc-12-s390x-linux-gnu amd64 12.2.0-14cross1 [15.4 MB] Get:56 http://localhost:3142/debian sid/main amd64 gcc-s390x-linux-gnu amd64 4:12.2.0-3 [1464 B] Get:57 http://localhost:3142/debian sid/main amd64 linux-libc-dev-s390x-cross all 6.1.4-1cross1 [1834 kB] Get:58 http://localhost:3142/debian sid/main amd64 libc6-dev-s390x-cross all 2.36-8cross1 [1386 kB] Get:59 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-s390x-cross all 12.2.0-14cross1 [1997 kB] Get:60 http://localhost:3142/debian sid/main amd64 g++-12-s390x-linux-gnu amd64 12.2.0-14cross1 [8718 kB] Get:61 http://localhost:3142/debian sid/main amd64 g++-s390x-linux-gnu amd64 4:12.2.0-3 [1176 B] Get:62 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:63 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:68 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:69 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:70 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:71 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:73 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:74 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:75 http://localhost:3142/debian sid/main amd64 crossbuild-essential-s390x all 12.9 [6704 B] Get:76 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:77 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB] Get:78 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:79 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:80 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:81 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:82 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:83 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:84 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:85 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-10 [1300 kB] Get:86 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:88 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB] Get:89 http://localhost:3142/debian sid/main s390x gcc-11-base s390x 11.3.0-11 [38.3 kB] Get:90 http://localhost:3142/debian sid/main s390x gcc-12-base s390x 12.2.0-14 [37.5 kB] Get:91 http://localhost:3142/debian sid/main amd64 help2man amd64 1.49.3 [198 kB] Get:92 http://localhost:3142/debian sid/main s390x libgcc-s1 s390x 12.2.0-14 [24.7 kB] Get:93 http://localhost:3142/debian sid/main s390x libc6 s390x 2.36-8 [2243 kB] Get:94 http://localhost:3142/debian sid/main s390x libbz2-1.0 s390x 1.0.8-5+b1 [46.8 kB] Get:95 http://localhost:3142/debian sid/main s390x libbrotli1 s390x 1.0.9-2+b5 [265 kB] Get:96 http://localhost:3142/debian sid/main s390x libgmp10 s390x 2:6.2.1+dfsg1-1.1 [551 kB] Get:97 http://localhost:3142/debian sid/main s390x libnettle8 s390x 3.8.1-2 [297 kB] Get:98 http://localhost:3142/debian sid/main s390x libhogweed6 s390x 3.8.1-2 [325 kB] Get:99 http://localhost:3142/debian sid/main s390x libunistring2 s390x 1.0-2 [413 kB] Get:100 http://localhost:3142/debian sid/main s390x libidn2-0 s390x 2.3.3-1+b1 [121 kB] Get:101 http://localhost:3142/debian sid/main s390x libffi8 s390x 3.4.4-1 [19.6 kB] Get:102 http://localhost:3142/debian sid/main s390x libp11-kit0 s390x 0.24.1-2 [339 kB] Get:103 http://localhost:3142/debian sid/main s390x libtasn1-6 s390x 4.19.0-2 [53.7 kB] Get:104 http://localhost:3142/debian sid/main s390x libgnutls30 s390x 3.7.8-4 [1268 kB] Get:105 http://localhost:3142/debian sid/main s390x libcom-err2 s390x 1.46.6~rc1-1.1 [15.9 kB] Get:106 http://localhost:3142/debian sid/main s390x libkrb5support0 s390x 1.20.1-1 [31.3 kB] Get:107 http://localhost:3142/debian sid/main s390x libk5crypto3 s390x 1.20.1-1 [75.9 kB] Get:108 http://localhost:3142/debian sid/main s390x libkeyutils1 s390x 1.6.3-2 [8600 B] Get:109 http://localhost:3142/debian sid/main s390x libssl3 s390x 3.0.7-2 [1612 kB] Get:110 http://localhost:3142/debian sid/main s390x libkrb5-3 s390x 1.20.1-1 [308 kB] Get:111 http://localhost:3142/debian sid/main s390x libgssapi-krb5-2 s390x 1.20.1-1 [121 kB] Get:112 http://localhost:3142/debian sid/main s390x libdb5.3 s390x 5.3.28+dfsg2-1 [621 kB] Get:113 http://localhost:3142/debian sid/main s390x libsasl2-modules-db s390x 2.1.28+dfsg-10 [19.4 kB] Get:114 http://localhost:3142/debian sid/main s390x libsasl2-2 s390x 2.1.28+dfsg-10 [56.0 kB] Get:115 http://localhost:3142/debian sid/main s390x libldap-2.5-0 s390x 2.5.13+dfsg-3 [170 kB] Get:116 http://localhost:3142/debian sid/main s390x libnghttp2-14 s390x 1.51.0-1 [67.1 kB] Get:117 http://localhost:3142/debian sid/main s390x libpsl5 s390x 0.21.0-1.2 [57.1 kB] Get:118 http://localhost:3142/debian sid/main s390x zlib1g s390x 1:1.2.13.dfsg-1 [79.6 kB] Get:119 http://localhost:3142/debian sid/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2+b2 [56.5 kB] Get:120 http://localhost:3142/debian sid/main s390x libssh2-1 s390x 1.10.0-3+b1 [169 kB] Get:121 http://localhost:3142/debian sid/main s390x libzstd1 s390x 1.5.2+dfsg2-3 [251 kB] Get:122 http://localhost:3142/debian sid/main s390x libcurl3-gnutls s390x 7.87.0-2 [343 kB] Get:123 http://localhost:3142/debian sid/main s390x libdeflate0 s390x 1.14-1 [54.3 kB] Get:124 http://localhost:3142/debian sid/main s390x libhtscodecs2 s390x 1.3.0-4 [68.7 kB] Get:125 http://localhost:3142/debian sid/main s390x liblzma5 s390x 5.4.1-0.0 [200 kB] Get:126 http://localhost:3142/debian sid/main s390x libhts3 s390x 1.16+ds-3 [391 kB] Get:127 http://localhost:3142/debian sid/main s390x libstdc++6 s390x 12.2.0-14 [613 kB] Get:128 http://localhost:3142/debian sid/main s390x kallisto s390x 0.48.0+dfsg-3 [244 kB] Get:129 http://localhost:3142/debian sid/main s390x libasan6 s390x 11.3.0-11 [1928 kB] Get:130 http://localhost:3142/debian sid/main s390x libatomic1 s390x 12.2.0-14 [8068 B] Get:131 http://localhost:3142/debian sid/main s390x linux-libc-dev s390x 6.1.7-1 [1712 kB] Get:132 http://localhost:3142/debian sid/main s390x libcrypt1 s390x 1:4.4.33-2 [89.9 kB] Get:133 http://localhost:3142/debian sid/main s390x libcrypt-dev s390x 1:4.4.33-2 [118 kB] Get:134 http://localhost:3142/debian sid/main s390x libtirpc3 s390x 1.3.3+ds-1 [78.4 kB] Get:135 http://localhost:3142/debian sid/main s390x libnsl2 s390x 1.3.0-2 [37.3 kB] Get:136 http://localhost:3142/debian sid/main s390x libtirpc-dev s390x 1.3.3+ds-1 [185 kB] Get:137 http://localhost:3142/debian sid/main s390x libnsl-dev s390x 1.3.0-2 [64.6 kB] Get:138 http://localhost:3142/debian sid/main s390x libc6-dev s390x 2.36-8 [1401 kB] Get:139 http://localhost:3142/debian sid/main s390x libgomp1 s390x 12.2.0-14 [105 kB] Get:140 http://localhost:3142/debian sid/main s390x libitm1 s390x 12.2.0-14 [25.3 kB] Get:141 http://localhost:3142/debian sid/main s390x libubsan1 s390x 12.2.0-14 [851 kB] Get:142 http://localhost:3142/debian sid/main s390x libgcc-11-dev s390x 11.3.0-11 [690 kB] Get:143 http://localhost:3142/debian sid/main amd64 libseqan2-dev all 2.4.0+dfsg-15 [1215 kB] Get:144 http://localhost:3142/debian sid/main s390x libstdc++-11-dev s390x 11.3.0-11 [1931 kB] Get:145 http://localhost:3142/debian sid/main s390x zlib1g-dev s390x 1:1.2.13.dfsg-1 [908 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 101 MB in 1s (174 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15192 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.4-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... 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Setting up libgcc-s1-s390x-cross (12.2.0-14cross1) ... Setting up libncursesw6:amd64 (6.4-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up libitm1-s390x-cross (12.2.0-14cross1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libc6-dev-s390x-cross (2.36-8cross1) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libgomp1-s390x-cross (12.2.0-14cross1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up cpp-12-s390x-linux-gnu (12.2.0-14cross1) ... Setting up gettext (0.21-10) ... Setting up cpp-s390x-linux-gnu (4:12.2.0-3) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libstdc++6-s390x-cross (12.2.0-14cross1) ... Setting up libasan8-s390x-cross (12.2.0-14cross1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up libcurl4:amd64 (7.87.0-2) ... Setting up libubsan1-s390x-cross (12.2.0-14cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-12-dev-s390x-cross (12.2.0-14cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.25.1-1) ... Setting up libstdc++-12-dev-s390x-cross (12.2.0-14cross1) ... Setting up debhelper (13.11.4) ... Setting up gcc-12-s390x-linux-gnu (12.2.0-14cross1) ... Setting up gcc-s390x-linux-gnu (4:12.2.0-3) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-12-s390x-linux-gnu (12.2.0-14cross1) ... Setting up g++-s390x-linux-gnu (4:12.2.0-3) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-s390x (12.9) ... Setting up libgcc-s1:s390x (12.2.0-14) ... Setting up libc6:s390x (2.36-8) ... Setting up libffi8:s390x (3.4.4-1) ... Setting up libtasn1-6:s390x (4.19.0-2) ... Setting up libbz2-1.0:s390x (1.0.8-5+b1) ... Setting up libdb5.3:s390x (5.3.28+dfsg2-1) ... Setting up libstdc++6:s390x (12.2.0-14) ... Setting up libitm1:s390x (12.2.0-14) ... Setting up libhtscodecs2:s390x (1.3.0-4) ... Setting up libzstd1:s390x (1.5.2+dfsg2-3) ... Setting up libkeyutils1:s390x (1.6.3-2) ... Setting up liblzma5:s390x (5.4.1-0.0) ... Setting up libbrotli1:s390x (1.0.9-2+b5) ... Setting up libssl3:s390x (3.0.7-2) ... Setting up libnghttp2-14:s390x (1.51.0-1) ... Setting up libunistring2:s390x (1.0-2) ... Setting up libdeflate0:s390x (1.14-1) ... Setting up zlib1g:s390x (1:1.2.13.dfsg-1) ... Setting up libcrypt1:s390x (1:4.4.33-2) ... Setting up libidn2-0:s390x (2.3.3-1+b1) ... Setting up libcom-err2:s390x (1.46.6~rc1-1.1) ... Setting up libgomp1:s390x (12.2.0-14) ... Setting up libasan6:s390x (11.3.0-11) ... Setting up libkrb5support0:s390x (1.20.1-1) ... Setting up libsasl2-modules-db:s390x (2.1.28+dfsg-10) ... Setting up libnettle8:s390x (3.8.1-2) ... Setting up libgmp10:s390x (2:6.2.1+dfsg1-1.1) ... Setting up libp11-kit0:s390x (0.24.1-2) ... Setting up libatomic1:s390x (12.2.0-14) ... Setting up libk5crypto3:s390x (1.20.1-1) ... Setting up libsasl2-2:s390x (2.1.28+dfsg-10) ... Setting up libubsan1:s390x (12.2.0-14) ... Setting up libgcc-11-dev:s390x (11.3.0-11) ... Setting up libcrypt-dev:s390x (1:4.4.33-2) ... Setting up libssh2-1:s390x (1.10.0-3+b1) ... Setting up libkrb5-3:s390x (1.20.1-1) ... Setting up libpsl5:s390x (0.21.0-1.2) ... Setting up libhogweed6:s390x (3.8.1-2) ... Setting up libgnutls30:s390x (3.7.8-4) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:s390x (1.20.1-1) ... Setting up libtirpc3:s390x (1.3.3+ds-1) ... Setting up libldap-2.5-0:s390x (2.5.13+dfsg-3) ... Setting up libtirpc-dev:s390x (1.3.3+ds-1) ... Setting up libnsl2:s390x (1.3.0-2) ... Setting up libcurl3-gnutls:s390x (7.87.0-2) ... Setting up libnsl-dev:s390x (1.3.0-2) ... Setting up libc6-dev:s390x (2.36-8) ... Setting up libhts3:s390x (1.16+ds-3) ... Setting up libstdc++-11-dev:s390x (11.3.0-11) ... Setting up zlib1g-dev:s390x (1:1.2.13.dfsg-1) ... Setting up kallisto:s390x (0.48.0+dfsg-3) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.36-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) amd64 (x86_64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.19 g++-11_11.3.0-11 g++-12_12.2.0-14 gcc-11_11.3.0-11 gcc-12_12.2.0-14 libc6-dev_2.36-8 libstdc++-11-dev_11.3.0-11 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-s390x-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-s390x-cross_12.2.0-14cross1 linux-libc-dev_6.1.7-1 Package versions: adduser_3.130 apt_2.5.5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 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pizzly Architecture: any Version: 0.37.3+ds-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/pmelsted/pizzly Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pizzly Vcs-Git: https://salsa.debian.org/med-team/pizzly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev Package-List: pizzly deb science optional arch=any Checksums-Sha1: 3c134c7e66314d7c3fdb99d6f9aaa4347d12e713 262304 pizzly_0.37.3+ds.orig.tar.xz c0a79cea3c490eccfefb82c35a90de28a72a6c25 5308 pizzly_0.37.3+ds-9.debian.tar.xz Checksums-Sha256: 8dd0dfb08a9341d4eeb525679779d3afb641b198c88df646ffc7e72930039678 262304 pizzly_0.37.3+ds.orig.tar.xz 7dbcaf4d228a00de23bcd05ea43b829bb4736a3c87e83a346b766a14d7dd4141 5308 pizzly_0.37.3+ds-9.debian.tar.xz Files: cba5c09c8f5493378b068821029df3a5 262304 pizzly_0.37.3+ds.orig.tar.xz fdcd50bccd08aad5072daaa28b32a9d8 5308 pizzly_0.37.3+ds-9.debian.tar.xz 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gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pizzly_0.37.3+ds-9.dsc: no acceptable signature found dpkg-source: info: extracting pizzly in /<> dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-6d055d89-c24a-49f8-9897-6dcba1e527ec SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f debian/pizzly.1 make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-s390x-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=s390x -DCMAKE_C_COMPILER=s390x-linux-gnu-gcc -DCMAKE_CXX_COMPILER=s390x-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/s390x-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu .. -- The CXX compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/s390x-linux-gnu/libz.so (found version "1.2.13") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-s390x-linux-gnu dh_auto_build -a cd obj-s390x-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles /<>/obj-s390x-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-s390x-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/<>/obj-s390x-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/s390x-linux-gnu-g++ -I/<>/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /<>/main.cpp In file included from /<>/main.cpp:6: /<>/common.h: In constructor ‘ProgramOptions::ProgramOptions()’: /<>/common.h:18:7: warning: ‘ProgramOptions::kmerScore’ will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /<>/common.h:17:7: warning: ‘int ProgramOptions::insertSize’ [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /<>/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /<>/common.h:17:7: warning: ‘ProgramOptions::insertSize’ will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /<>/common.h:14:8: warning: ‘bool ProgramOptions::ignoreProtein’ [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /<>/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /<>/main.cpp:8: /<>/GeneModel.hpp: In member function ‘bool Transcriptome::translateTrPosition(const std::string&, int, std::string&, int&, std::string&)’: /<>/GeneModel.hpp:117:10: warning: unused variable ‘fw’ [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /<>/GeneModel.hpp: In function ‘void writeTranscriptome(Transcriptome&, std::ostream&)’: /<>/GeneModel.hpp:146:17: warning: unused variable ‘gene_id’ [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /<>/GeneModel.hpp:172:19: warning: unused variable ‘tr_id’ [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /<>/GeneModel.hpp: In function ‘void parseGTF(Transcriptome&, const std::string&, const ProgramOptions&)’: /<>/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/main.cpp:9: /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /<>/FilterFusions.hpp:205:27: note: remove ‘std::move’ call /<>/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /<>/FilterFusions.hpp:214:21: note: remove ‘std::move’ call /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:251:9: warning: unused variable ‘matchlen’ [-Wunused-variable] 251 | int matchlen = seqan::length(krseq); | ^~~~~~~~ /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | if (tr_stop > seqan::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /<>/FilterFusions.hpp:323:21: note: remove ‘std::move’ call /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:765:11: warning: unused variable ‘gap’ [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /<>/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /<>/FilterFusions.hpp:781:21: note: remove ‘std::move’ call /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /<>/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:867:17: warning: unused variable ‘split_reads’ [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /<>/FilterFusions.hpp:1033:29: warning: loop variable ‘p’ creates a copy from type ‘const std::pair > >’ [-Wrange-loop-construct] 1033 | for (const auto p : trfmap) { | ^ /<>/FilterFusions.hpp:1033:29: note: use reference type to prevent copying 1033 | for (const auto p : trfmap) { | ^ | & /<>/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /<>/FilterFusions.hpp:1112:18: warning: unused variable ‘firstJsonRead’ [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /<>/main.cpp: In function ‘int main(int, const char**)’: /<>/main.cpp:126:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map, seqan::String > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/GeneModel.hpp: In function ‘Strandedness operator~(const Strandedness&)’: /<>/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ In file included from /usr/include/seqan/stream.h:119, from /usr/include/seqan/arg_parse.h:46, from /<>/main.cpp:2: In function ‘TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]’, inlined from ‘seqan::String seqan::_getNumbersFromString(const std::string&)’ at /usr/include/seqan/arg_parse/arg_parse_version_check.h:356:46: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function ‘seqan::String seqan::_getNumbersFromString(const std::string&)’: /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int&’ to ‘seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]’ declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here 253 | TTarget target; | ^~~~~~ In function ‘TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]’, inlined from ‘void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]’ at /usr/include/seqan/gff_io/gff_io_base.h:379:44: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function ‘void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]’: /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int&’ to ‘seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]’ declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here 253 | TTarget target; | ^~~~~~ In function ‘TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]’, inlined from ‘void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]’ at /usr/include/seqan/gff_io/gff_io_base.h:386:42: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function ‘void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]’: /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int&’ to ‘seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]’ declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here 253 | TTarget target; | ^~~~~~ /<>/FilterFusions.hpp: In member function ‘auto filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)::&, const std::vector&, std::vector >&, int&)>::operator().constprop(const std::string&, const std::vector&, const std::vector&, std::vector >&, int&) const’: /<>/FilterFusions.hpp:435:15: warning: ‘splitStrand’ may be used uninitialized [-Wmaybe-uninitialized] 435 | if (forwardRead) { | ^~ /<>/FilterFusions.hpp:389:22: note: ‘splitStrand’ was declared here 389 | Strandedness splitStrand, safeStrand; | ^~~~~~~~~~~ /<>/FilterFusions.hpp: In function ‘bool filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)’: /<>/FilterFusions.hpp:603:25: warning: ‘st2’ may be used uninitialized [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:554:22: note: ‘st2’ was declared here 554 | Strandedness st1,st2; | ^~~ /<>/FilterFusions.hpp:602:25: warning: ‘st1’ may be used uninitialized [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:554:18: note: ‘st1’ was declared here 554 | Strandedness st1,st2; | ^~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-s390x-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ -a install -m0755 -d /<>/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/<>' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 help2man: can't get `--help' info from obj-s390x-linux-gnu/pizzly Try `--no-discard-stderr' if option outputs to stderr make[1]: *** [debian/rules:11: override_dh_install] Error 126 make[1]: Leaving directory '/<>' make: *** [debian/rules:8: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2023-01-29T18:33:18Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 38928 Build-Time: 37 Distribution: unstable Fail-Stage: build Foreign Architectures: s390x Host Architecture: s390x Install-Time: 11 Job: pizzly_0.37.3+ds-9 Machine Architecture: amd64 Package: pizzly Package-Time: 59 Source-Version: 0.37.3+ds-9 Space: 38928 Status: attempted Version: 0.37.3+ds-9 -------------------------------------------------------------------------------- Finished at 2023-01-29T18:33:18Z Build needed 00:00:59, 38928k disk space