sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | plast 2.3.2+dfsg-8 (amd64) Wed, 26 Jan 2022 19:12:29 +0000 | +==============================================================================+ Package: plast Version: 2.3.2+dfsg-8 Source Version: 2.3.2+dfsg-8 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-79db82d4-9c59-45a8-8752-16dde7ce9ce7' with '<>' I: NOTICE: Log filtering will replace 'build/plast-IJTaJQ/resolver-APIeDd' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [8885 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9456 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8748 kB] Fetched 27.3 MB in 7s (3811 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'plast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plast.git Please use: git clone https://salsa.debian.org/med-team/plast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5749 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main plast 2.3.2+dfsg-8 (dsc) [2068 B] Get:2 http://mirror.einval.org/debian sid/main plast 2.3.2+dfsg-8 (tar) [5726 kB] Get:3 http://mirror.einval.org/debian sid/main plast 2.3.2+dfsg-8 (diff) [21.0 kB] Fetched 5749 kB in 0s (37.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/plast-IJTaJQ/plast-2.3.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/plast-IJTaJQ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [430 B] Get:5 copy:/<>/apt_archive ./ Packages [516 B] Fetched 1903 B in 0s (42.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils ca-certificates ca-certificates-java cmake cmake-data cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper default-jdk:amd64 default-jdk-headless:amd64 default-jre:amd64 default-jre-headless:amd64 dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file fontconfig-config fonts-dejavu-core g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian java-common libarchive-zip-perl libarchive13 libasan6:amd64 libasan6-amd64-cross libasound2:amd64 libasound2-data libatomic1:amd64 libatomic1-amd64-cross libavahi-client3 libavahi-client3:amd64 libavahi-common-data libavahi-common-data:amd64 libavahi-common3 libavahi-common3:amd64 libblkid1:amd64 libbrotli1 libbrotli1:amd64 libbsd0 libbsd0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcap2:amd64 libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcups2 libcups2:amd64 libcurl4 libdbus-1-3 libdbus-1-3:amd64 libdebhelper-perl libdebian-dpkgcross-perl libdrm-amdgpu1:amd64 libdrm-common libdrm-intel1:amd64 libdrm-nouveau2:amd64 libdrm-radeon1:amd64 libdrm2:amd64 libedit2:amd64 libelf1 libelf1:amd64 libexpat1 libexpat1:amd64 libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:amd64 libfreetype6 libfreetype6:amd64 libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgcrypt20:amd64 libgif7:amd64 libgl1:amd64 libgl1-mesa-dri:amd64 libglapi-mesa:amd64 libglib2.0-0:amd64 libglvnd0:amd64 libglx-mesa0:amd64 libglx0:amd64 libgmp10:amd64 libgnutls30:amd64 libgomp1:amd64 libgomp1-amd64-cross libgpg-error0:amd64 libgraphite2-3:amd64 libgssapi-krb5-2:amd64 libharfbuzz0b:amd64 libhogweed6:amd64 libicu67 libicu67:amd64 libidn2-0:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjpeg62-turbo libjpeg62-turbo:amd64 libjsoncpp25 libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblcms2-2 liblcms2-2:amd64 libldap-2.4-2 libllvm13:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross liblz4-1:amd64 liblzma5:amd64 libmagic-mgc libmagic1 libmd0 libmd0:amd64 libmount1:amd64 libncurses6 libncursesw6 libnettle8:amd64 libnghttp2-14 libnsl-dev:amd64 libnsl2:amd64 libnspr4 libnspr4:amd64 libnss3 libnss3:amd64 libp11-kit0:amd64 libpciaccess0:amd64 libpcre2-16-0:amd64 libpcre2-32-0:amd64 libpcre2-8-0:amd64 libpcre2-dev:amd64 libpcre2-posix3:amd64 libpcre3:amd64 libpcsclite1 libpcsclite1:amd64 libpipeline1 libpng16-16 libpng16-16:amd64 libprocps8 libpsl5 libquadmath0:amd64 libquadmath0-amd64-cross librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1:amd64 libsensors-config libsensors5:amd64 libsigsegv2 libsimde-dev libsqlite3-0 libsqlite3-0:amd64 libssh2-1 libssl1.1:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libsystemd0:amd64 libtasn1-6:amd64 libtinfo6:amd64 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring2:amd64 libuuid1:amd64 libuv1 libvulkan1:amd64 libx11-6 libx11-6:amd64 libx11-data libx11-xcb1:amd64 libxau6 libxau6:amd64 libxcb-dri2-0:amd64 libxcb-dri3-0:amd64 libxcb-glx0:amd64 libxcb-present0:amd64 libxcb-shm0:amd64 libxcb-sync1:amd64 libxcb-xfixes0:amd64 libxcb1 libxcb1:amd64 libxdmcp6 libxdmcp6:amd64 libxext6 libxext6:amd64 libxfixes3:amd64 libxi6 libxi6:amd64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:amd64 libxrender1 libxrender1:amd64 libxshmfence1:amd64 libxtst6 libxtst6:amd64 libxxf86vm1:amd64 libyaml-perl libz3-4:amd64 libzstd1:amd64 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db openjdk-11-jdk:amd64 openjdk-11-jdk-headless:amd64 openjdk-11-jre:amd64 openjdk-11-jre-headless:amd64 openjdk-8-jre-headless openssl po-debconf procps sensible-utils ucf x11-common zlib1g:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc ninja-build cmake-format gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-x86-64-linux-gnu gcc-11-doc gcc-11-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff default-jre lrzip libasound2-plugins:amd64 alsa-utils glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 cups-common cups-common:amd64 rng-tools:amd64 gnutls-bin:amd64 krb5-doc:amd64 krb5-user:amd64 liblcms2-utils liblcms2-utils:amd64 cryptsetup-bin:amd64 pciutils:amd64 pcscd pcscd:amd64 lm-sensors lm-sensors:amd64 libstdc++-11-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser openjdk-11-demo:amd64 openjdk-11-source:amd64 visualvm:amd64 libnss-mdns:amd64 fonts-dejavu-extra:amd64 fonts-ipafont-gothic:amd64 fonts-ipafont-mincho:amd64 fonts-wqy-microhei:amd64 | fonts-wqy-zenhei:amd64 fonts-indic:amd64 libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic libmail-box-perl Recommended packages: curl | wget | lynx alsa-ucm-conf alsa-topology-conf dbus dbus:amd64 libarchive-cpio-perl libglib2.0-data:amd64 shared-mime-info:amd64 xdg-user-dirs:amd64 libgpg-error-l10n:amd64 krb5-locales:amd64 libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev uuid-runtime:amd64 mesa-vulkan-drivers:amd64 | vulkan-icd:amd64 libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libxt-dev:amd64 libatk-wrapper-java-jni:amd64 fonts-dejavu-extra:amd64 libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils ca-certificates ca-certificates-java cmake cmake-data cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper default-jdk:amd64 default-jdk-headless:amd64 default-jre:amd64 default-jre-headless:amd64 dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file fontconfig-config fonts-dejavu-core g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian java-common libarchive-zip-perl libarchive13 libasan6:amd64 libasan6-amd64-cross libasound2:amd64 libasound2-data libatomic1:amd64 libatomic1-amd64-cross libavahi-client3 libavahi-client3:amd64 libavahi-common-data libavahi-common-data:amd64 libavahi-common3 libavahi-common3:amd64 libblkid1:amd64 libbrotli1 libbrotli1:amd64 libbsd0 libbsd0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcap2:amd64 libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcups2 libcups2:amd64 libcurl4 libdbus-1-3 libdbus-1-3:amd64 libdebhelper-perl libdebian-dpkgcross-perl libdrm-amdgpu1:amd64 libdrm-common libdrm-intel1:amd64 libdrm-nouveau2:amd64 libdrm-radeon1:amd64 libdrm2:amd64 libedit2:amd64 libelf1 libelf1:amd64 libexpat1 libexpat1:amd64 libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:amd64 libfreetype6 libfreetype6:amd64 libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgcrypt20:amd64 libgif7:amd64 libgl1:amd64 libgl1-mesa-dri:amd64 libglapi-mesa:amd64 libglib2.0-0:amd64 libglvnd0:amd64 libglx-mesa0:amd64 libglx0:amd64 libgmp10:amd64 libgnutls30:amd64 libgomp1:amd64 libgomp1-amd64-cross libgpg-error0:amd64 libgraphite2-3:amd64 libgssapi-krb5-2:amd64 libharfbuzz0b:amd64 libhogweed6:amd64 libicu67 libicu67:amd64 libidn2-0:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjpeg62-turbo libjpeg62-turbo:amd64 libjsoncpp25 libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblcms2-2 liblcms2-2:amd64 libldap-2.4-2 libllvm13:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross liblz4-1:amd64 liblzma5:amd64 libmagic-mgc libmagic1 libmd0 libmd0:amd64 libmount1:amd64 libncurses6 libncursesw6 libnettle8:amd64 libnghttp2-14 libnsl-dev:amd64 libnsl2:amd64 libnspr4 libnspr4:amd64 libnss3 libnss3:amd64 libp11-kit0:amd64 libpciaccess0:amd64 libpcre2-16-0:amd64 libpcre2-32-0:amd64 libpcre2-8-0:amd64 libpcre2-dev:amd64 libpcre2-posix3:amd64 libpcre3:amd64 libpcsclite1 libpcsclite1:amd64 libpipeline1 libpng16-16 libpng16-16:amd64 libprocps8 libpsl5 libquadmath0:amd64 libquadmath0-amd64-cross librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1:amd64 libsensors-config libsensors5:amd64 libsigsegv2 libsimde-dev libsqlite3-0 libsqlite3-0:amd64 libssh2-1 libssl1.1:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libsystemd0:amd64 libtasn1-6:amd64 libtinfo6:amd64 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring2:amd64 libuuid1:amd64 libuv1 libvulkan1:amd64 libx11-6 libx11-6:amd64 libx11-data libx11-xcb1:amd64 libxau6 libxau6:amd64 libxcb-dri2-0:amd64 libxcb-dri3-0:amd64 libxcb-glx0:amd64 libxcb-present0:amd64 libxcb-shm0:amd64 libxcb-sync1:amd64 libxcb-xfixes0:amd64 libxcb1 libxcb1:amd64 libxdmcp6 libxdmcp6:amd64 libxext6 libxext6:amd64 libxfixes3:amd64 libxi6 libxi6:amd64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:amd64 libxrender1 libxrender1:amd64 libxshmfence1:amd64 libxtst6 libxtst6:amd64 libxxf86vm1:amd64 libyaml-perl libz3-4:amd64 libzstd1:amd64 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db openjdk-11-jdk:amd64 openjdk-11-jdk-headless:amd64 openjdk-11-jre:amd64 openjdk-11-jre-headless:amd64 openjdk-8-jre-headless openssl po-debconf procps sbuild-build-depends-main-dummy:amd64 sensible-utils ucf x11-common zlib1g:amd64 0 upgraded, 259 newly installed, 0 to remove and 0 not upgraded. Need to get 586 MB of archives. After this operation, 1611 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-14 [207 kB] Get:4 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-14 [42.0 kB] Get:5 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.33-4 [2832 kB] Get:6 http://mirror.einval.org/debian sid/main amd64 libcap2 amd64 1:2.44-1 [23.6 kB] Get:7 http://mirror.einval.org/debian sid/main amd64 libgpg-error0 amd64 1.43-3 [82.2 kB] Get:8 http://mirror.einval.org/debian sid/main amd64 libgcrypt20 amd64 1.9.4-5 [662 kB] Get:9 http://mirror.einval.org/debian sid/main amd64 liblz4-1 amd64 1.9.3-2 [57.5 kB] Get:10 http://mirror.einval.org/debian sid/main amd64 liblzma5 amd64 5.2.5-2 [168 kB] Get:11 http://mirror.einval.org/debian sid/main amd64 libzstd1 amd64 1.4.8+dfsg-3 [319 kB] Get:12 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http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.37.3-1 [144 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.5-1 [35.8 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.9.4-4 [1336 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.1 [823 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 java-common all 0.72 [14.5 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libavahi-common-data arm64 0.8-5 [123 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libavahi-common3 arm64 0.8-5 [57.1 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libdbus-1-3 arm64 1.12.20-3 [209 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libavahi-client3 arm64 0.8-5 [60.6 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libcups2 arm64 2.3.3op2-7 [334 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.2-1 [152 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libexpat1 arm64 2.4.3-2 [91.5 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libbrotli1 arm64 1.0.9-2+b3 [270 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libfreetype6 arm64 2.11.1+dfsg-1 [374 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 fontconfig-config all 2.13.1-4.3 [281 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libfontconfig1 arm64 2.13.1-4.3 [346 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libnspr4 arm64 2:4.32-3 [105 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.37.2-2 [771 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libnss3 arm64 2:3.73.1-1 [1217 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libpcsclite1 arm64 1.9.5-1 [59.6 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libmd0 arm64 1.0.4-1 [29.5 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libbsd0 arm64 0.11.5-1 [110 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libx11-data all 2:1.7.2-2 [311 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libx11-6 arm64 2:1.7.2-2+b1 [751 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1 [51.6 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libxi6 arm64 2:1.8-1 [82.1 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 x11-common all 1:7.7+23 [252 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libxtst6 arm64 2:1.2.3-1 [26.7 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 openjdk-8-jre-headless arm64 8u312-b07-1 [27.8 MB] Get:68 http://mirror.einval.org/debian sid/main arm64 ca-certificates-java all 20190909 [15.7 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.12+dfsg-5+b1 [633 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libarchive13 arm64 3.5.2-1 [322 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg2-3 [74.4 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libsasl2-2 arm64 2.1.27+dfsg2-3 [110 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libldap-2.4-2 arm64 2.4.59+dfsg-1 [222 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libssh2-1 arm64 1.10.0-2 [172 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libcurl4 arm64 7.81.0-1 [336 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libjsoncpp25 arm64 1.9.5-2 [72.4 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 librhash0 arm64 1.4.2-1 [127 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libuv1 arm64 1.43.0-1 [131 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 dh-elpa-helper all 2.0.10 [11.3 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 emacsen-common all 3.0.4 [19.3 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 cmake-data all 3.22.1-1 [1905 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 cmake arm64 3.22.1-1+b1 [5437 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu-base arm64 11.2.0-9cross1 [205 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 cpp-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [48.2 MB] Get:89 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:11.2.0-2 [17.0 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 binutils-x86-64-linux-gnu arm64 2.37.90.20220123-2 [2327 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-amd64-cross all 11.2.0-9cross1 [42.0 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 libgomp1-amd64-cross all 11.2.0-9cross1 [104 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 libitm1-amd64-cross all 11.2.0-9cross1 [25.5 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libatomic1-amd64-cross all 11.2.0-9cross1 [8764 B] Get:97 http://mirror.einval.org/debian sid/main arm64 libasan6-amd64-cross all 11.2.0-9cross1 [2044 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 11.2.0-9cross1 [885 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libtsan0-amd64-cross all 11.2.0-9cross1 [2010 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.33-1cross1 [1579 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 11.2.0-9cross1 [535 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 11.2.0-9cross1 [834 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 11.2.0-9cross1 [145 kB] Get:104 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-amd64-cross all 11.2.0-9cross1 [2357 kB] Get:105 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [54.7 MB] Get:106 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:11.2.0-2 [1460 B] Get:107 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.15.5-1cross1 [1576 kB] Get:108 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.33-1cross1 [2272 kB] Get:109 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-amd64-cross all 11.2.0-9cross1 [1952 kB] Get:110 http://mirror.einval.org/debian sid/main arm64 g++-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [52.2 MB] Get:111 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:11.2.0-2 [1176 B] Get:112 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:113 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:114 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:115 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:116 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:117 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0207+dfsg-2 [328 kB] Get:118 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:119 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:120 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:121 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:122 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:123 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:124 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:125 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:126 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.6 [193 kB] Get:127 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:128 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:129 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:130 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:131 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:132 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:133 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.186-1 [177 kB] Get:134 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:135 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:136 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:137 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:138 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.6 [1054 kB] Get:139 http://mirror.einval.org/debian sid/main amd64 libavahi-common-data amd64 0.8-5 [124 kB] Get:140 http://mirror.einval.org/debian sid/main amd64 libavahi-common3 amd64 0.8-5 [58.4 kB] Get:141 http://mirror.einval.org/debian sid/main amd64 libdbus-1-3 amd64 1.12.20-3 [219 kB] Get:142 http://mirror.einval.org/debian sid/main amd64 libavahi-client3 amd64 0.8-5 [62.1 kB] Get:143 http://mirror.einval.org/debian sid/main amd64 libgmp10 amd64 2:6.2.1+dfsg-3 [560 kB] Get:144 http://mirror.einval.org/debian sid/main amd64 libnettle8 amd64 3.7.3-1 [270 kB] Get:145 http://mirror.einval.org/debian sid/main amd64 libhogweed6 amd64 3.7.3-1 [320 kB] Get:146 http://mirror.einval.org/debian sid/main amd64 libunistring2 amd64 0.9.10-6 [384 kB] Get:147 http://mirror.einval.org/debian sid/main amd64 libidn2-0 amd64 2.3.2-2 [95.3 kB] Get:148 http://mirror.einval.org/debian sid/main amd64 libffi8 amd64 3.4.2-4 [24.7 kB] Get:149 http://mirror.einval.org/debian sid/main amd64 libp11-kit0 amd64 0.24.0-6 [347 kB] Get:150 http://mirror.einval.org/debian sid/main amd64 libtasn1-6 amd64 4.18.0-4 [55.9 kB] Get:151 http://mirror.einval.org/debian sid/main amd64 libgnutls30 amd64 3.7.3-4 [1376 kB] Get:152 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.5-2 [75.7 kB] Get:153 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.18.3-7 [65.4 kB] Get:154 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.18.3-7 [113 kB] Get:155 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:156 http://mirror.einval.org/debian sid/main amd64 libssl1.1 amd64 1.1.1m-1 [1557 kB] Get:157 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.18.3-7 [363 kB] Get:158 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.18.3-7 [165 kB] Get:159 http://mirror.einval.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] Get:160 http://mirror.einval.org/debian sid/main amd64 libcups2 amd64 2.3.3op2-7 [349 kB] Get:161 http://mirror.einval.org/debian sid/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:162 http://mirror.einval.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.2-1 [164 kB] Get:163 http://mirror.einval.org/debian sid/main amd64 libexpat1 amd64 2.4.3-2 [106 kB] Get:164 http://mirror.einval.org/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b3 [276 kB] Get:165 http://mirror.einval.org/debian sid/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:166 http://mirror.einval.org/debian sid/main amd64 libfreetype6 amd64 2.11.1+dfsg-1 [400 kB] Get:167 http://mirror.einval.org/debian sid/main amd64 libuuid1 amd64 2.37.3-1 [85.1 kB] Get:168 http://mirror.einval.org/debian sid/main amd64 libfontconfig1 amd64 2.13.1-4.3 [350 kB] Get:169 http://mirror.einval.org/debian sid/main amd64 libnspr4 amd64 2:4.32-3 [113 kB] Get:170 http://mirror.einval.org/debian sid/main amd64 libsqlite3-0 amd64 3.37.2-2 [822 kB] Get:171 http://mirror.einval.org/debian sid/main amd64 libnss3 amd64 2:3.73.1-1 [1321 kB] Get:172 http://mirror.einval.org/debian sid/main arm64 libasound2-data all 1.2.6.1-1 [38.7 kB] Get:173 http://mirror.einval.org/debian sid/main amd64 libasound2 amd64 1.2.6.1-1 [375 kB] Get:174 http://mirror.einval.org/debian sid/main amd64 libblkid1 amd64 2.37.3-1 [202 kB] Get:175 http://mirror.einval.org/debian sid/main amd64 libpcre2-8-0 amd64 10.39-3 [252 kB] Get:176 http://mirror.einval.org/debian sid/main amd64 libselinux1 amd64 3.3-1+b1 [88.6 kB] Get:177 http://mirror.einval.org/debian sid/main amd64 libmount1 amd64 2.37.3-1 [219 kB] Get:178 http://mirror.einval.org/debian sid/main amd64 libpcre3 amd64 2:8.39-13 [343 kB] Get:179 http://mirror.einval.org/debian sid/main amd64 libglib2.0-0 amd64 2.70.2-1 [1403 kB] Get:180 http://mirror.einval.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:181 http://mirror.einval.org/debian sid/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:182 http://mirror.einval.org/debian sid/main amd64 libpcsclite1 amd64 1.9.5-1 [60.2 kB] Get:183 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-14 [577 kB] Get:184 http://mirror.einval.org/debian sid/main amd64 openjdk-11-jre-headless amd64 11.0.14+9-1 [37.3 MB] Get:185 http://mirror.einval.org/debian sid/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:186 http://mirror.einval.org/debian sid/main amd64 libglvnd0 amd64 1.4.0-1 [51.0 kB] Get:187 http://mirror.einval.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:188 http://mirror.einval.org/debian sid/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:189 http://mirror.einval.org/debian sid/main amd64 libbsd0 amd64 0.11.5-1 [112 kB] Get:190 http://mirror.einval.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:191 http://mirror.einval.org/debian sid/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:192 http://mirror.einval.org/debian sid/main amd64 libx11-6 amd64 2:1.7.2-2+b1 [772 kB] Get:193 http://mirror.einval.org/debian sid/main arm64 libdrm-common all 2.4.109-2 [15.3 kB] Get:194 http://mirror.einval.org/debian sid/main amd64 libdrm2 amd64 2.4.109-2 [44.6 kB] Get:195 http://mirror.einval.org/debian sid/main amd64 libglapi-mesa amd64 21.3.4-1 [74.6 kB] Get:196 http://mirror.einval.org/debian sid/main amd64 libx11-xcb1 amd64 2:1.7.2-2+b1 [203 kB] Get:197 http://mirror.einval.org/debian sid/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:198 http://mirror.einval.org/debian sid/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:199 http://mirror.einval.org/debian sid/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:200 http://mirror.einval.org/debian sid/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:201 http://mirror.einval.org/debian sid/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:202 http://mirror.einval.org/debian sid/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:203 http://mirror.einval.org/debian sid/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:204 http://mirror.einval.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:205 http://mirror.einval.org/debian sid/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:206 http://mirror.einval.org/debian sid/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:207 http://mirror.einval.org/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:208 http://mirror.einval.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.109-2 [29.1 kB] Get:209 http://mirror.einval.org/debian sid/main amd64 libpciaccess0 amd64 0.16-3 [53.7 kB] Get:210 http://mirror.einval.org/debian sid/main amd64 libdrm-intel1 amd64 2.4.109-2 [72.6 kB] Get:211 http://mirror.einval.org/debian sid/main amd64 libdrm-nouveau2 amd64 2.4.109-2 [27.4 kB] Get:212 http://mirror.einval.org/debian sid/main amd64 libdrm-radeon1 amd64 2.4.109-2 [30.8 kB] Get:213 http://mirror.einval.org/debian sid/main amd64 libelf1 amd64 0.186-1 [179 kB] Get:214 http://mirror.einval.org/debian sid/main amd64 libtinfo6 amd64 6.3-2 [349 kB] Get:215 http://mirror.einval.org/debian sid/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:216 http://mirror.einval.org/debian sid/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:217 http://mirror.einval.org/debian sid/main amd64 libxml2 amd64 2.9.12+dfsg-5+b1 [701 kB] Get:218 http://mirror.einval.org/debian sid/main amd64 libz3-4 amd64 4.8.12-1+b1 [6997 kB] Get:219 http://mirror.einval.org/debian sid/main amd64 libllvm13 amd64 1:13.0.1~+rc3-1~exp1 [20.1 MB] Get:220 http://mirror.einval.org/debian sid/main arm64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:221 http://mirror.einval.org/debian sid/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:222 http://mirror.einval.org/debian sid/main amd64 libvulkan1 amd64 1.2.198.1-2 [103 kB] Get:223 http://mirror.einval.org/debian sid/main amd64 libgl1-mesa-dri amd64 21.3.4-1 [10.8 MB] Get:224 http://mirror.einval.org/debian sid/main amd64 libglx-mesa0 amd64 21.3.4-1 [184 kB] Get:225 http://mirror.einval.org/debian sid/main amd64 libglx0 amd64 1.4.0-1 [33.7 kB] Get:226 http://mirror.einval.org/debian sid/main amd64 libgl1 amd64 1.4.0-1 [90.9 kB] Get:227 http://mirror.einval.org/debian sid/main amd64 libgif7 amd64 5.1.9-2 [45.1 kB] Get:228 http://mirror.einval.org/debian sid/main amd64 libxi6 amd64 2:1.8-1 [84.0 kB] Get:229 http://mirror.einval.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:230 http://mirror.einval.org/debian sid/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:231 http://mirror.einval.org/debian sid/main amd64 openjdk-11-jre amd64 11.0.14+9-1 [175 kB] Get:232 http://mirror.einval.org/debian sid/main amd64 default-jre amd64 2:1.11-72 [1044 B] Get:233 http://mirror.einval.org/debian sid/main amd64 openjdk-11-jdk-headless amd64 11.0.14+9-1 [214 MB] Get:234 http://mirror.einval.org/debian sid/main amd64 default-jdk-headless amd64 2:1.11-72 [1100 B] Get:235 http://mirror.einval.org/debian sid/main amd64 openjdk-11-jdk amd64 11.0.14+9-1 [7103 kB] Get:236 http://mirror.einval.org/debian sid/main amd64 default-jdk amd64 2:1.11-72 [1056 B] Get:237 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 11.2.0-14 [2050 kB] Get:238 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 11.2.0-14 [9044 B] Get:239 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.15.15-1 [1478 kB] Get:240 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.27-1.1 [89.0 kB] Get:241 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.27-1.1 [118 kB] Get:242 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:243 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:244 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:245 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:246 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.33-4 [2274 kB] Get:247 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 11.2.0-14 [106 kB] Get:248 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 11.2.0-14 [26.1 kB] Get:249 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 11.2.0-14 [886 kB] Get:250 http://mirror.einval.org/debian sid/main amd64 libtsan0 amd64 11.2.0-14 [2016 kB] Get:251 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 11.2.0-14 [835 kB] Get:252 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 11.2.0-14 [144 kB] Get:253 http://mirror.einval.org/debian sid/main amd64 libgcc-11-dev amd64 11.2.0-14 [2356 kB] Get:254 http://mirror.einval.org/debian sid/main amd64 libpcre2-16-0 amd64 10.39-3 [237 kB] Get:255 http://mirror.einval.org/debian sid/main amd64 libpcre2-32-0 amd64 10.39-3 [225 kB] Get:256 http://mirror.einval.org/debian sid/main amd64 libpcre2-posix3 amd64 10.39-3 [52.2 kB] Get:257 http://mirror.einval.org/debian sid/main amd64 libpcre2-dev amd64 10.39-3 [734 kB] Get:258 http://mirror.einval.org/debian sid/main arm64 libsimde-dev all 0.7.2-6 [259 kB] Get:259 http://mirror.einval.org/debian sid/main amd64 libstdc++-11-dev amd64 11.2.0-14 [1979 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 586 MB in 8s (75.6 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12359 files and directories currently installed.) Preparing to unpack .../0-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-11-base:amd64. Preparing to unpack .../1-gcc-11-base_11.2.0-14_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-14) ... Selecting previously unselected package libgcc-s1:amd64. Preparing to unpack .../2-libgcc-s1_11.2.0-14_amd64.deb ... Unpacking libgcc-s1:amd64 (11.2.0-14) ... Selecting previously unselected package libc6:amd64. Preparing to unpack .../3-libc6_2.33-4_amd64.deb ... Unpacking libc6:amd64 (2.33-4) ... Selecting previously unselected package libcap2:amd64. Preparing to unpack .../4-libcap2_1%3a2.44-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.44-1) ... Selecting previously unselected package libgpg-error0:amd64. Preparing to unpack .../5-libgpg-error0_1.43-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.43-3) ... 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Setting up libzstd1:amd64 (1.4.8+dfsg-3) ... Selecting previously unselected package libsystemd0:amd64. (Reading database ... 12686 files and directories currently installed.) Preparing to unpack .../000-libsystemd0_250.3-1_amd64.deb ... Unpacking libsystemd0:amd64 (250.3-1) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../001-libncurses6_6.3-2_arm64.deb ... Unpacking libncurses6:arm64 (6.3-2) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../002-libncursesw6_6.3-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.3-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-6_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-6) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-6_arm64.deb ... Unpacking procps (2:3.3.17-6) ... Selecting previously unselected package sensible-utils. 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Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../012-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../013-groff-base_1.22.4-8_arm64.deb ... Unpacking groff-base (1.22.4-8) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../014-bsdextrautils_2.37.3-1_arm64.deb ... Unpacking bsdextrautils (2.37.3-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../015-libpipeline1_1.5.5-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.5-1) ... Selecting previously unselected package man-db. Preparing to unpack .../016-man-db_2.9.4-4_arm64.deb ... Unpacking man-db (2.9.4-4) ... Selecting previously unselected package ucf. Preparing to unpack .../017-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... 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Unpacking libnss3:arm64 (2:3.73.1-1) ... Selecting previously unselected package libpcsclite1:arm64. Preparing to unpack .../042-libpcsclite1_1.9.5-1_arm64.deb ... Unpacking libpcsclite1:arm64 (1.9.5-1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../043-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../044-libmd0_1.0.4-1_arm64.deb ... Unpacking libmd0:arm64 (1.0.4-1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../045-libbsd0_0.11.5-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.5-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../046-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../047-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... 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Selecting previously unselected package libxtst6:arm64. Preparing to unpack .../054-libxtst6_2%3a1.2.3-1_arm64.deb ... Unpacking libxtst6:arm64 (2:1.2.3-1) ... Selecting previously unselected package openjdk-8-jre-headless:arm64. Preparing to unpack .../055-openjdk-8-jre-headless_8u312-b07-1_arm64.deb ... Unpacking openjdk-8-jre-headless:arm64 (8u312-b07-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../056-ca-certificates-java_20190909_all.deb ... Unpacking ca-certificates-java (20190909) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../057-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../058-libxml2_2.9.12+dfsg-5+b1_arm64.deb ... Unpacking libxml2:arm64 (2.9.12+dfsg-5+b1) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../059-libarchive13_3.5.2-1_arm64.deb ... Unpacking libarchive13:arm64 (3.5.2-1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../060-libsasl2-modules-db_2.1.27+dfsg2-3_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg2-3) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../061-libsasl2-2_2.1.27+dfsg2-3_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg2-3) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../062-libldap-2.4-2_2.4.59+dfsg-1_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.59+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../063-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../064-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. 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Setting up libtsan0:amd64 (11.2.0-14) ... Setting up libstdc++6-amd64-cross (11.2.0-9cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libpciaccess0:amd64 (0.16-3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libhogweed6:amd64 (3.7.3-1) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:arm64 (3.5.2-1) ... Setting up liblsan0-amd64-cross (11.2.0-9cross1) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libc6-dev-amd64-cross (2.33-1cross1) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libtsan0-amd64-cross (11.2.0-9cross1) ... Setting up libavahi-common3:amd64 (0.8-5) ... Setting up libavahi-common3:arm64 (0.8-5) ... Setting up libldap-2.4-2:arm64 (2.4.59+dfsg-1) ... Setting up cpp-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up libnss3:amd64 (2:3.73.1-1) ... Setting up libnss3:arm64 (2:3.73.1-1) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libgomp1-amd64-cross (11.2.0-9cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up libitm1-amd64-cross (11.2.0-9cross1) ... Setting up libselinux1:amd64 (3.3-1+b1) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libz3-4:amd64 (4.8.12-1+b1) ... Setting up libatomic1-amd64-cross (11.2.0-9cross1) ... Setting up libfreetype6:amd64 (2.11.1+dfsg-1) ... Setting up libfreetype6:arm64 (2.11.1+dfsg-1) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up libp11-kit0:amd64 (0.24.0-6) ... Setting up libquadmath0-amd64-cross (11.2.0-9cross1) ... Setting up libgssapi-krb5-2:amd64 (1.18.3-7) ... Setting up libubsan1-amd64-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up libubsan1:amd64 (11.2.0-14) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libgcc-11-dev:amd64 (11.2.0-14) ... Setting up libdrm2:amd64 (2.4.109-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up libmount1:amd64 (2.37.3-1) ... Setting up procps (2:3.3.17-6) ... Setting up libcurl4:arm64 (7.81.0-1) ... Setting up libx11-6:amd64 (2:1.7.2-2+b1) ... Setting up libx11-6:arm64 (2:1.7.2-2+b1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5+b1) ... Setting up libavahi-client3:amd64 (0.8-5) ... Setting up libavahi-client3:arm64 (0.8-5) ... Setting up libdrm-amdgpu1:amd64 (2.4.109-2) ... Setting up cpp-x86-64-linux-gnu (4:11.2.0-2) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgcc-11-dev-amd64-cross (11.2.0-9cross1) ... Setting up libtirpc3:amd64 (1.3.2-2) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libx11-xcb1:amd64 (2:1.7.2-2+b1) ... Setting up libdrm-nouveau2:amd64 (2.4.109-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libglib2.0-0:amd64 (2.70.2-1) ... /var/lib/dpkg/info/libglib2.0-0:amd64.postinst: 58: /usr/lib/x86_64-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:amd64.postinst: 59: /usr/lib/x86_64-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libdrm-radeon1:amd64 (2.4.109-2) ... Setting up fontconfig-config (2.13.1-4.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libdrm-intel1:amd64 (2.4.109-2) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libxext6:arm64 (2:1.3.4-1) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up dh-autoreconf (20) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libgnutls30:amd64 (3.7.3-4) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up gcc-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up libllvm13:amd64 (1:13.0.1~+rc3-1~exp1) ... Setting up libxml-libxml-perl (2.0207+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcups2:amd64 (2.3.3op2-7) ... Setting up libcups2:arm64 (2.3.3op2-7) ... Setting up libstdc++-11-dev-amd64-cross (11.2.0-9cross1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up cmake (3.22.1-1+b1) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.3) ... Setting up libfontconfig1:arm64 (2.13.1-4.3) ... Setting up g++-11-x86-64-linux-gnu (11.2.0-9cross1) ... Setting up libxi6:amd64 (2:1.8-1) ... Setting up libxi6:arm64 (2:1.8-1) ... Setting up gcc-x86-64-linux-gnu (4:11.2.0-2) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libxtst6:arm64 (2:1.2.3-1) ... Setting up libgl1-mesa-dri:amd64 (21.3.4-1) ... Setting up debhelper (13.6) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up g++-x86-64-linux-gnu (4:11.2.0-2) ... Setting up libc6-dev:amd64 (2.33-4) ... Setting up libglx-mesa0:amd64 (21.3.4-1) ... Setting up libpcre2-dev:amd64 (10.39-3) ... Setting up libglx0:amd64 (1.4.0-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libgl1:amd64 (1.4.0-1) ... Setting up libstdc++-11-dev:amd64 (11.2.0-14) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Warning: there was a problem reading the certificate file /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem. Message: /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem (No such file or directory) Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Processing triggers for libc-bin (2.33-4) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Setting up openjdk-8-jre-headless:arm64 (8u312-b07-1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre-headless:amd64 (11.0.14+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode /var/lib/dpkg/info/openjdk-11-jre-headless:amd64.postinst: 117: /usr/lib/jvm/java-11-openjdk-amd64/bin/java: Exec format error ignoring dump failure Setting up openjdk-11-jre:amd64 (11.0.14+9-1) ... Setting up openjdk-11-jdk-headless:amd64 (11.0.14+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up openjdk-11-jdk:amd64 (11.0.14+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jre-headless:amd64 (2:1.11-72) ... Setting up default-jre:amd64 (2:1.11-72) ... Setting up default-jdk-headless:amd64 (2:1.11-72) ... Setting up default-jdk:amd64 (2:1.11-72) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.37.90.20220123-2 dpkg-dev_1.21.1 g++-11_11.2.0-14 gcc-11_11.2.0-14 libc6-dev_2.33-4 libstdc++-11-dev_11.2.0-14 libstdc++-11-dev-amd64-cross_11.2.0-9cross1 libstdc++6_11.2.0-14 libstdc++6-amd64-cross_11.2.0-9cross1 linux-libc-dev_5.15.15-1 Package versions: adduser_3.118 apt_2.3.14 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.90.20220123-2 binutils-aarch64-linux-gnu_2.37.90.20220123-2 binutils-common_2.37.90.20220123-2 binutils-x86-64-linux-gnu_2.37.90.20220123-2 bsdextrautils_2.37.3-1 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 ca-certificates-java_20190909 cmake_3.22.1-1+b1 cmake-data_3.22.1-1 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-14 cpp-11-x86-64-linux-gnu_11.2.0-9cross1 cpp-x86-64-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.7-0.1 default-jdk_2:1.11-72 default-jdk-headless_2:1.11-72 default-jre_2:1.11-72 default-jre-headless_2:1.11-72 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 emacsen-common_3.0.4 fakeroot_1.27-1 file_1:5.41-2 findutils_4.8.0-1 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libbrotli1_1.0.9-2+b3 libbsd0_0.11.5-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-4 libc-dev-bin_2.33-4 libc6_2.33-4 libc6-amd64-cross_2.33-1cross1 libc6-dev_2.33-4 libc6-dev-amd64-cross_2.33-1cross1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-14 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.37.90.20220123-2 libctf0_2.37.90.20220123-2 libcups2_2.3.3op2-7 libcurl4_7.81.0-1 libdb5.3_5.3.28+dfsg1-0.8 libdbus-1-3_1.12.20-3 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.21.1 libdrm-amdgpu1_2.4.109-2 libdrm-common_2.4.109-2 libdrm-intel1_2.4.109-2 libdrm-nouveau2_2.4.109-2 libdrm-radeon1_2.4.109-2 libdrm2_2.4.109-2 libedit2_3.1-20210910-1 libelf1_0.186-1 libexpat1_2.4.3-2 libfakeroot_1.27-1 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.3 libfreetype6_2.11.1+dfsg-1 libgcc-11-dev_11.2.0-14 libgcc-11-dev-amd64-cross_11.2.0-9cross1 libgcc-s1_11.2.0-14 libgcc-s1-amd64-cross_11.2.0-9cross1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgif7_5.1.9-2 libgl1_1.4.0-1 libgl1-mesa-dri_21.3.4-1 libglapi-mesa_21.3.4-1 libglib2.0-0_2.70.2-1 libglvnd0_1.4.0-1 libglx-mesa0_21.3.4-1 libglx0_1.4.0-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4 libgomp1_11.2.0-14 libgomp1-amd64-cross_11.2.0-9cross1 libgpg-error0_1.43-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1 libhogweed6_3.7.3-1 libhwasan0_11.2.0-14 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl23_0.24-2 libitm1_11.2.0-14 libitm1-amd64-cross_11.2.0-9cross1 libjpeg62-turbo_1:2.1.2-1 libjsoncpp25_1.9.5-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.59+dfsg-1 libllvm13_1:13.0.1~+rc3-1~exp1 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-14 liblsan0-amd64-cross_11.2.0-9cross1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmount1_2.37.3-1 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncurses6_6.3-2 libncursesw6_6.3-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnspr4_2:4.32-3 libnss3_2:3.73.1-1 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpciaccess0_0.16-3 libpcre2-16-0_10.39-3 libpcre2-32-0_10.39-3 libpcre2-8-0_10.39-3 libpcre2-dev_10.39-3 libpcre2-posix3_10.39-3 libpcre3_2:8.39-13 libpcsclite1_1.9.5-1 libperl5.32_5.32.1-6 libpipeline1_1.5.5-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.17-6 libpsl5_0.21.0-1.2 libquadmath0_11.2.0-14 libquadmath0-amd64-cross_11.2.0-9cross1 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg2-3 libsasl2-modules-db_2.1.27+dfsg2-3 libseccomp2_2.5.3-2 libselinux1_3.3-1+b1 libsemanage-common_3.3-1 libsemanage2_3.3-1+b1 libsensors-config_1:3.6.0-7 libsensors5_1:3.6.0-7 libsepol2_3.3-1 libsigsegv2_2.13-1 libsimde-dev_0.7.2-6 libsmartcols1_2.37.3-1 libsqlite3-0_3.37.2-2 libssh2-1_1.10.0-2 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-14 libstdc++-11-dev-amd64-cross_11.2.0-9cross1 libstdc++6_11.2.0-14 libstdc++6-amd64-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_250.3-1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-14 libtsan0-amd64-cross_11.2.0-9cross1 libubsan1_11.2.0-14 libubsan1-amd64-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_250.3-1 libunistring2_0.9.10-6 libuuid1_2.37.3-1 libuv1_1.43.0-1 libvulkan1_1.2.198.1-2 libx11-6_2:1.7.2-2+b1 libx11-data_2:1.7.2-2 libx11-xcb1_2:1.7.2-2+b1 libxau6_1:1.0.9-1 libxcb-dri2-0_1.14-3 libxcb-dri3-0_1.14-3 libxcb-glx0_1.14-3 libxcb-present0_1.14-3 libxcb-shm0_1.14-3 libxcb-sync1_1.14-3 libxcb-xfixes0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxfixes3_1:5.0.3-2 libxi6_2:1.8-1 libxml-libxml-perl_2.0207+dfsg-2 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5+b1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxtst6_2:1.2.3-1 libxxf86vm1_1:1.1.4-1+b2 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libz3-4_4.8.12-1+b1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.15-1 linux-libc-dev-amd64-cross_5.15.5-1cross1 login_1:4.8.1-2 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-3 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 openjdk-11-jdk_11.0.14+9-1 openjdk-11-jdk-headless_11.0.14+9-1 openjdk-11-jre_11.0.14+9-1 openjdk-11-jre-headless_11.0.14+9-1 openjdk-8-jre-headless_8u312-b07-1 openssl_1.1.1m-1 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 procps_2:3.3.17-6 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.3-1 x11-common_1:7.7+23 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plast Binary: plast, plast-example Architecture: any all Version: 2.3.2+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://plast.inria.fr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/plast Vcs-Git: https://salsa.debian.org/med-team/plast.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev Package-List: plast deb science optional arch=any plast-example deb science optional arch=all Checksums-Sha1: 693e7fd60cb7cd41a9843320e1349a7a23d61671 5726436 plast_2.3.2+dfsg.orig.tar.xz 3431663f0772cc49264c525f9a4f863a718f788a 20984 plast_2.3.2+dfsg-8.debian.tar.xz Checksums-Sha256: db8bcabc66ecc2555d1aeeba68dfc459dd7977251274c1f793e78da092ee9ff1 5726436 plast_2.3.2+dfsg.orig.tar.xz 06143e2c5591d1882bca184d1a19ed0011e773c569fb6a4a09070b49f80527b1 20984 plast_2.3.2+dfsg-8.debian.tar.xz Files: db86adecf11d4eb4e75280a4da50ce13 5726436 plast_2.3.2+dfsg.orig.tar.xz 89cbc3018bd1d4abb7dfa36318538d65 20984 plast_2.3.2+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHu9OQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHDnQ//UTAaVoiBLjghc8I/Wt+MBPNbXotuyMZH CgF+0tL2D5xzifJCKeVLyOzr5xPmItICHYKPV+aTP/9KSOa+jLcYs46A1nZ98Hu0 8ondhURTf04WY2KhGJjRZy7J6/GLdXFe0yQsmOuOTk+0/lxUj3mUMV1JGfC1LVjo dqTVxMjMpbtP1KQrnBL1lguRvWpienTzMwhmzsfM1l/kG6hA0SrLrgzWH4yDMYbH qJrkLDENKHpaqEeLSg3UJw5WZp85pE7D+WbIh8ENByJZt1qdTIdhMvW8d13p43SF E6LIoVEB9RbH1DVn8vgxwNisC/n4jXHBQRv91dO5JJVxfHRFtOeDKgIo/kdil5RB BbmTzygP2fwVBHzl+n+aspZ2Wd9W2hqys+uEoA9eHHohzBrdlJklBz7mnEE+PSIE 5X/3ibI9BmBW3MjNT9bi9ZscJTRN9UqlqOgamfKVAQE2fyzfe3CsSXNYvaBmK9aH XJ755wB1F/SY5NLgORnC/2YE6TvIV+6FuLlbaTAFoZdd4lOiu7jGWG6+hD202bpd a88Z+rWQ/Ta6d0wHW2r+5sSfIPRiTr39V9vFXkCpiyzl4RF3aw6kQPfKxm7EtWZQ E7Tsn6scg55LxXaDCHsldAxlM/xMieFcuu65yFnw6M9bKLRk5ahXv2XPaQKLzYKC UJOd94HvpV4= =mYDO -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.h_I08ADo/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 24 18:50:12 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./plast_2.3.2+dfsg-8.dsc dpkg-source: info: extracting plast in /<> dpkg-source: info: unpacking plast_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking plast_2.3.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying adapt_auto_test_script.sh dpkg-source: info: applying no_msse3.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying pcre.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-79db82d4-9c59-45a8-8752-16dde7ce9ce7 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package plast dpkg-buildpackage: info: source version 2.3.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' set -e ; for SIMD in sse3 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && export CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory=obj-${SIMD} ; \ done cd obj-sse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-sse3 dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' set -e ; for SIMD in sse3 ; do \ dh_auto_build --builddirectory=obj-${SIMD} ; \ done cd obj-sse3 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-sse3' /usr/bin/cmake -S/<> -B/<>/obj-sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-sse3/CMakeFiles /<>/obj-sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-sse3' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/depend make[4]: Entering directory '/<>/obj-sse3' cd /<>/obj-sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-sse3 /<>/obj-sse3 /<>/obj-sse3/CMakeFiles/PlastLibrary.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-sse3' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build make[4]: Entering directory '/<>/obj-sse3' [ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /<>/src/algo/core/impl/AbstractAlgorithm.cpp [ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /<>/src/algo/core/impl/AlgoIndexatorNucleotide.cpp [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /<>/src/algo/core/impl/AlgorithmPlastn.cpp [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /<>/src/algo/core/impl/BasicAlgoIndexator.cpp [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /<>/src/algo/core/impl/DatabasesProvider.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /<>/src/algo/core/impl/DefaultAlgoConfig.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c 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CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -c /<>/src/algo/hits/common/AbstractPipeHitIterator.cpp [ 4%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -c /<>/src/algo/hits/gap/CompositionHitIterator.cpp [ 4%] Building CXX object 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CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /<>/src/algo/hits/gap/SmallGapHitIteratorNull.cpp [ 5%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o.d -o 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /<>/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF 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-I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIterator.cpp [ 8%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops 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/usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /<>/src/algo/stats/impl/Statistics.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /<>/src/algo/stats/impl/StatisticsPlastn.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include 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-I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /<>/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /<>/src/designpattern/impl/XmlReader.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/x86_64-linux-gnu-g++ 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CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 33%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/x86_64-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:44: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 259 | _nbAlignments - _lastNbAlign, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 260 | _nbAlignments, | ~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:78: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 265 | _maxUsedMemory, | ~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:84: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 12 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 266 | _totalUsedMemory | ~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 59%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 60%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c 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/<>/src/alignment/core/impl/BasicAlignmentContainer.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -c /<>/src/alignment/core/impl/HspContainer.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 79%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 79%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /<>/src/designpattern/impl/XmlReader.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /<>/src/index/impl/AbstractDatabaseIndex.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 83%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/x86_64-linux-gnu-gcc -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:44: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 259 | _nbAlignments - _lastNbAlign, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 260 | _nbAlignments, | ~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:78: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 265 | _maxUsedMemory, | ~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:84: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 12 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 266 | _totalUsedMemory | ~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT 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CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /<>/src/algo/stats/impl/Statistics.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /<>/src/algo/stats/impl/StatisticsPlastn.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /<>/src/algo/stats/impl/StatisticsSpouge.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 11%] Building CXX object 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/<>/src/alignment/core/impl/ReaderAlignmentContainer.cpp [ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/UngapAlignmentContainer.cpp [ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o 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/<>/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp [ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -c /<>/src/alignment/tools/impl/AlignmentOverlapCmd.cpp [ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ 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-I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/FilterContainerVisitor.cpp [ 17%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong 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CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -c /<>/src/alignment/visitors/impl/ModelBuilderVisitor.cpp [ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /<>/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp [ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -c /<>/src/alignment/visitors/impl/QueryReorderVisitor.cpp [ 19%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -c /<>/src/alignment/visitors/impl/ReverseStrandVisitor.cpp [ 19%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp [ 20%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/SortContainerVisitor.cpp [ 20%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /<>/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp [ 20%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /<>/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /<>/src/database/impl/AbstractSequenceIterator.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /<>/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /<>/src/designpattern/impl/XmlReader.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /<>/src/index/impl/AbstractDatabaseIndex.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 33%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/x86_64-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:44: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 259 | _nbAlignments - _lastNbAlign, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 260 | _nbAlignments, | ~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:78: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 265 | _maxUsedMemory, | ~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:84: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 12 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 266 | _totalUsedMemory | ~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong 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CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include 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/usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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/<>/src/algo/stats/impl/Statistics.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /<>/src/algo/stats/impl/StatisticsPlastn.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 60%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /<>/src/algo/stats/impl/StatisticsSpouge.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /<>/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp [ 70%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /<>/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /<>/src/database/impl/AbstractSequenceIterator.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /<>/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF 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CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:44: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 5 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 259 | _nbAlignments - _lastNbAlign, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:50: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 260 | _nbAlignments, | ~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:78: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 11 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 265 | _maxUsedMemory, | ~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp:256:84: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 12 has type ‘u_int64_t’ {aka ‘long unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~~^ | | | long long int | %ld ...... 266 | _totalUsedMemory | ~~~~~~~~~~~~~~~~ | | | u_int64_t {aka long unsigned int} [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/x86_64-linux-gnu-g++ -D__LINUX__ -I/<>/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong 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/usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_installdirs -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/<>/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/include -- Installing: /<>/debian/tmp/usr/include/alignment -- Installing: /<>/debian/tmp/usr/include/alignment/filter -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterFactory.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/filter/api -- Installing: /<>/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlignTraceback.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/api -- Installing: /<>/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/AlignmentContainerFactory.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/Alignment.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/NucleotidConversionVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/ProxyVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/CompareContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/TabulatedOutputVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/CompareResultVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/ReverseStrandVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/tools -- Installing: /<>/debian/tmp/usr/include/seed -- Installing: /<>/debian/tmp/usr/include/seed/impl -- Installing: /<>/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp -- Installing: /<>/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp -- Installing: /<>/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp -- Installing: /<>/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp -- Installing: /<>/debian/tmp/usr/include/seed/api -- Installing: /<>/debian/tmp/usr/include/seed/api/ISeedIterator.hpp -- Installing: /<>/debian/tmp/usr/include/seed/api/ISeedModel.hpp -- Installing: /<>/debian/tmp/usr/include/seed/api/ISeed.hpp -- Installing: /<>/debian/tmp/usr/include/launcher -- Installing: /<>/debian/tmp/usr/include/launcher/observers -- Installing: /<>/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/jni -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/Wrapper.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/jni/Helper.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/JniObsfucation.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h -- Installing: /<>/debian/tmp/usr/include/launcher/core -- Installing: /<>/debian/tmp/usr/include/launcher/core/PlastCmd.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern -- Installing: /<>/debian/tmp/usr/include/designpattern/impl -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/Property.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/Observer.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api -- Installing: /<>/debian/tmp/usr/include/designpattern/api/ICommand.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api/IObserver.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api/IProperty.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api/Iterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo -- Installing: /<>/debian/tmp/usr/include/algo/hits -- Installing: /<>/debian/tmp/usr/include/algo/hits/common -- Installing: /<>/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/seed -- Installing: /<>/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/api -- Installing: /<>/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/hsp -- Installing: /<>/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core -- Installing: /<>/debian/tmp/usr/include/algo/core/impl -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp -- Installing: /<>/debian/tmp/usr/include/algo/stats -- Installing: /<>/debian/tmp/usr/include/algo/stats/impl -- Installing: /<>/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp -- Installing: /<>/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp -- Installing: /<>/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp -- Installing: /<>/debian/tmp/usr/include/algo/stats/api -- Installing: /<>/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp -- Installing: /<>/debian/tmp/usr/include/database -- Installing: /<>/debian/tmp/usr/include/database/impl -- Installing: /<>/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/api -- Installing: /<>/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/ISequence.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/ISequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/IAlphabet.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/ISequenceCache.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/IWord.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp -- Installing: /<>/debian/tmp/usr/include/misc -- Installing: /<>/debian/tmp/usr/include/misc/impl -- Installing: /<>/debian/tmp/usr/include/misc/impl/Option.hpp -- Installing: /<>/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp -- Installing: /<>/debian/tmp/usr/include/misc/impl/OptionsParser.hpp -- Installing: /<>/debian/tmp/usr/include/misc/api -- Installing: /<>/debian/tmp/usr/include/misc/api/version.hpp -- Installing: /<>/debian/tmp/usr/include/misc/api/CompleteSubjectDatabaseStats.hpp -- Installing: /<>/debian/tmp/usr/include/misc/api/PlastStringsRepository.hpp -- Installing: /<>/debian/tmp/usr/include/misc/api/PlastStrings.hpp -- Installing: /<>/debian/tmp/usr/include/misc/api/RangeTree.hpp -- Installing: /<>/debian/tmp/usr/include/misc/api/obsfucation.h -- Installing: /<>/debian/tmp/usr/include/misc/api/Vector.hpp -- Installing: /<>/debian/tmp/usr/include/misc/api/types.hpp -- Installing: /<>/debian/tmp/usr/include/misc/api/macros.hpp -- Installing: /<>/debian/tmp/usr/include/index -- Installing: /<>/debian/tmp/usr/include/index/impl -- Installing: /<>/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp -- Installing: /<>/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndex.hpp -- Installing: /<>/debian/tmp/usr/include/index/impl/DatabaseIndexHash.hpp -- Installing: /<>/debian/tmp/usr/include/index/impl/DatabaseIndex.hpp -- Installing: /<>/debian/tmp/usr/include/index/impl/AbstractDatabaseIndex.hpp -- Installing: /<>/debian/tmp/usr/include/index/impl/retrievall.h -- Installing: /<>/debian/tmp/usr/include/index/api -- Installing: /<>/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp -- Installing: /<>/debian/tmp/usr/include/os -- Installing: /<>/debian/tmp/usr/include/os/impl -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/TimeTools.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxTime.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsThread.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxThread.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxMemory.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsTime.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsMemory.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsMemory.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/ZlibFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsTime.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsThread.hpp -- Installing: /<>/debian/tmp/usr/include/os/api -- Installing: /<>/debian/tmp/usr/include/os/api/IMemoryFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IOsFactory.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IThread.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/ITime.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IResource.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IMemory.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IFile.hpp -- Installing: /<>/debian/tmp/usr/include/seg -- Installing: /<>/debian/tmp/usr/include/seg/impl -- Installing: /<>/debian/tmp/usr/include/seg/impl/DustMasker.hpp -- Installing: /<>/debian/tmp/usr/include/seg/impl/lnfac.pri -- Installing: /<>/debian/tmp/usr/include/seg/api -- Installing: /<>/debian/tmp/usr/include/seg/api/genwin.h -- Installing: /<>/debian/tmp/usr/include/seg/api/seg.h make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a # install binary cp -a obj-x86_64-linux-gnu/bin/*/plast debian/plast/usr/lib/plast/bin/ set -e ; for SIMD in sse3 ; do \ cp -a obj-${SIMD}/bin/*/plast debian/plast/usr/lib/plast/bin/plast-${SIMD} ; \ done # no need for the includes rm -rf debian/*/usr/include make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -a -O--buildsystem=cmake debian/rules override_dh_gencontrol-arch make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-6), " dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined make[1]: Leaving directory '/<>' dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'plast' in '../plast_2.3.2+dfsg-8_amd64.deb'. dpkg-deb: building package 'plast-dbgsym' in '../plast-dbgsym_2.3.2+dfsg-8_amd64.deb'. dpkg-genbuildinfo --build=any -O../plast_2.3.2+dfsg-8_amd64.buildinfo dpkg-genchanges --build=any -O../plast_2.3.2+dfsg-8_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-01-26T19:50:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ plast_2.3.2+dfsg-8_amd64.changes: --------------------------------- Format: 1.8 Date: Mon, 24 Jan 2022 23:44:55 +0530 Source: plast Binary: plast plast-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 2.3.2+dfsg-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: plast - Parallel Local Sequence Alignment Search Tool Closes: 999991 Changes: plast (2.3.2+dfsg-8) unstable; urgency=medium . * Team Upload. * Drop d/p/use_debian_packaged_pcre.patch * Add pcre.patch to build with pcre2 (Closes: #999991) * d/control: B-D on libpcre2-dev instead of libpcre3-dev Checksums-Sha1: 2469bcae89f4ea8618f0d006243157ecf57df138 10890996 plast-dbgsym_2.3.2+dfsg-8_amd64.deb a4df666d68f1f762595d05ad9ce3cbbebeb3af4a 8080 plast_2.3.2+dfsg-8_amd64.buildinfo 37c17873fa325456ee88cdaaa01af85e66a2a8ab 604032 plast_2.3.2+dfsg-8_amd64.deb Checksums-Sha256: 6f3eb2d60edde16ec5683ab8cfcdb156a0fca03ab1e36a67af992537320ff039 10890996 plast-dbgsym_2.3.2+dfsg-8_amd64.deb e2d17357b0243d88ef368ff4279aab2ab7b14b3d2e17673f34a10eca1112dda1 8080 plast_2.3.2+dfsg-8_amd64.buildinfo 4c1c6fdfacd92ed65871d01a154f95f5e5f8e003a48bed8d85adb63e6f2e3f2f 604032 plast_2.3.2+dfsg-8_amd64.deb Files: b75d6ce51a17dd89954275bd3f3fa1fc 10890996 debug optional plast-dbgsym_2.3.2+dfsg-8_amd64.deb 44b7122d2a1e76e18224301d441ec3e3 8080 science optional plast_2.3.2+dfsg-8_amd64.buildinfo 6777142e0cc979301d055dac1f80d6e5 604032 science optional plast_2.3.2+dfsg-8_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: plast Binary: plast plast-dbgsym Architecture: amd64 Version: 2.3.2+dfsg-8 Checksums-Md5: b75d6ce51a17dd89954275bd3f3fa1fc 10890996 plast-dbgsym_2.3.2+dfsg-8_amd64.deb 6777142e0cc979301d055dac1f80d6e5 604032 plast_2.3.2+dfsg-8_amd64.deb Checksums-Sha1: 2469bcae89f4ea8618f0d006243157ecf57df138 10890996 plast-dbgsym_2.3.2+dfsg-8_amd64.deb 37c17873fa325456ee88cdaaa01af85e66a2a8ab 604032 plast_2.3.2+dfsg-8_amd64.deb Checksums-Sha256: 6f3eb2d60edde16ec5683ab8cfcdb156a0fca03ab1e36a67af992537320ff039 10890996 plast-dbgsym_2.3.2+dfsg-8_amd64.deb 4c1c6fdfacd92ed65871d01a154f95f5e5f8e003a48bed8d85adb63e6f2e3f2f 604032 plast_2.3.2+dfsg-8_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Wed, 26 Jan 2022 19:50:27 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12.2), base-passwd (= 3.5.52), bash (= 5.1-6), binutils (= 2.37.90.20220123-2), binutils-aarch64-linux-gnu (= 2.37.90.20220123-2), binutils-common (= 2.37.90.20220123-2), bsdextrautils (= 2.37.3-1), bsdutils (= 1:2.37.3-1), build-essential (= 12.9), bzip2 (= 1.0.8-5), ca-certificates (= 20211016), ca-certificates-java (= 20190909), cmake (= 3.22.1-1+b1), cmake-data (= 3.22.1-1), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-14), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.6), debianutils (= 5.7-0.1), default-jdk (= 2:1.11-72), default-jdk-headless (= 2:1.11-72), default-jre (= 2:1.11-72), default-jre-headless (= 2:1.11-72), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.10), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), emacsen-common (= 3.0.4), file (= 1:5.41-2), findutils (= 4.8.0-1), fontconfig-config (= 2.13.1-4.3), fonts-dejavu-core (= 2.37-2), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-14), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-14), gcc-11-base (= 11.2.0-14), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), java-common (= 0.72), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.5.2-1), libasan6 (= 11.2.0-14), libasound2 (= 1.2.6.1-1), libasound2-data (= 1.2.6.1-1), libatomic1 (= 11.2.0-14), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1+b1), libavahi-client3 (= 0.8-5), libavahi-common-data (= 0.8-5), libavahi-common3 (= 0.8-5), libbinutils (= 2.37.90.20220123-2), libblkid1 (= 2.37.3-1), libbrotli1 (= 1.0.9-2+b3), libbsd0 (= 0.11.5-1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-4), libc-dev-bin (= 2.33-4), libc6 (= 2.33-4), libc6-dev (= 2.33-4), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-14), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.27-1.1), libcrypt1 (= 1:4.4.27-1.1), libctf-nobfd0 (= 2.37.90.20220123-2), libctf0 (= 2.37.90.20220123-2), libcups2 (= 2.3.3op2-7), libcurl4 (= 7.81.0-1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdbus-1-3 (= 1.12.20-3), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdpkg-perl (= 1.21.1), libdrm-amdgpu1 (= 2.4.109-2), libdrm-common (= 2.4.109-2), libdrm-intel1 (= 2.4.109-2), libdrm-nouveau2 (= 2.4.109-2), libdrm-radeon1 (= 2.4.109-2), libdrm2 (= 2.4.109-2), libedit2 (= 3.1-20210910-1), libelf1 (= 0.186-1), libexpat1 (= 2.4.3-2), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.3), libfreetype6 (= 2.11.1+dfsg-1), libgcc-11-dev (= 11.2.0-14), libgcc-s1 (= 11.2.0-14), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgif7 (= 5.1.9-2), libgl1 (= 1.4.0-1), libgl1-mesa-dri (= 21.3.4-1), libglapi-mesa (= 21.3.4-1), libglib2.0-0 (= 2.70.2-1), libglvnd0 (= 1.4.0-1), libglx-mesa0 (= 21.3.4-1), libglx0 (= 1.4.0-1), libgmp10 (= 2:6.2.1+dfsg-3), libgnutls30 (= 3.7.3-4), libgomp1 (= 11.2.0-14), libgpg-error0 (= 1.43-3), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz0b (= 2.7.4-1), libhogweed6 (= 3.7.3-1), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-14), libjpeg62-turbo (= 1:2.1.2-1), libjsoncpp25 (= 1.9.5-2), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblcms2-2 (= 2.12~rc1-2), libldap-2.4-2 (= 2.4.59+dfsg-1), libllvm13 (= 1:13.0.1~+rc3-1~exp1), liblsan0 (= 11.2.0-14), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmount1 (= 2.37.3-1), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.3-2), libncursesw6 (= 6.3-2), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnspr4 (= 2:4.32-3), libnss3 (= 2:3.73.1-1), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpciaccess0 (= 0.16-3), libpcre2-16-0 (= 10.39-3), libpcre2-32-0 (= 10.39-3), libpcre2-8-0 (= 10.39-3), libpcre2-dev (= 10.39-3), libpcre2-posix3 (= 10.39-3), libpcre3 (= 2:8.39-13), libpcsclite1 (= 1.9.5-1), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.5-1), libpng16-16 (= 1.6.37-3), libprocps8 (= 2:3.3.17-6), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 11.2.0-14), librhash0 (= 1.4.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg2-3), libsasl2-modules-db (= 2.1.27+dfsg2-3), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b1), libsensors-config (= 1:3.6.0-7), libsensors5 (= 1:3.6.0-7), libsigsegv2 (= 2.13-1), libsimde-dev (= 0.7.2-6), libsmartcols1 (= 2.37.3-1), libsqlite3-0 (= 3.37.2-2), libssh2-1 (= 1.10.0-2), libssl1.1 (= 1.1.1m-1), libstdc++-11-dev (= 11.2.0-14), libstdc++6 (= 11.2.0-14), libsub-override-perl (= 0.09-2), libsystemd0 (= 250.3-1), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-14), libubsan1 (= 11.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 250.3-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.3-1), libuv1 (= 1.43.0-1), libvulkan1 (= 1.2.198.1-2), libx11-6 (= 2:1.7.2-2+b1), libx11-data (= 2:1.7.2-2), libx11-xcb1 (= 2:1.7.2-2+b1), libxau6 (= 1:1.0.9-1), libxcb-dri2-0 (= 1.14-3), libxcb-dri3-0 (= 1.14-3), libxcb-glx0 (= 1.14-3), libxcb-present0 (= 1.14-3), libxcb-shm0 (= 1.14-3), libxcb-sync1 (= 1.14-3), libxcb-xfixes0 (= 1.14-3), libxcb1 (= 1.14-3), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.4-1), libxfixes3 (= 1:5.0.3-2), libxi6 (= 2:1.8-1), libxml2 (= 2.9.12+dfsg-5+b1), libxrender1 (= 1:0.9.10-1), libxshmfence1 (= 1.3-1), libxtst6 (= 2:1.2.3-1), libxxf86vm1 (= 1:1.1.4-1+b2), libz3-4 (= 4.8.12-1+b1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.15-1), login (= 1:4.8.1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-4), mawk (= 1.3.4.20200120-3), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), openjdk-11-jdk (= 11.0.14+9-1), openjdk-11-jdk-headless (= 11.0.14+9-1), openjdk-11-jre (= 11.0.14+9-1), openjdk-11-jre-headless (= 11.0.14+9-1), openjdk-8-jre-headless (= 8u312-b07-1), openssl (= 1.1.1m-1), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-6), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), ucf (= 3.0043), util-linux (= 2.37.3-1), x11-common (= 1:7.7+23), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1643048095" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ plast-dbgsym_2.3.2+dfsg-8_amd64.deb ----------------------------------- new Debian package, version 2.0. size 10890996 bytes: control archive=640 bytes. 415 bytes, 12 lines control 294 bytes, 3 lines md5sums Package: plast-dbgsym Source: plast Version: 2.3.2+dfsg-8 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 11626 Depends: plast (= 2.3.2+dfsg-8) Section: debug Priority: optional Description: debug symbols for plast Build-Ids: 0b2c06965b865c74a7391af489f788235a3be07c 6dce047c16c54738a0a51c310f70b51a6a9876dc drwxr-xr-x root/root 0 2022-01-24 18:14 ./ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/debug/.build-id/0b/ -rw-r--r-- root/root 5317488 2022-01-24 18:14 ./usr/lib/debug/.build-id/0b/2c06965b865c74a7391af489f788235a3be07c.debug drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/debug/.build-id/6d/ -rw-r--r-- root/root 5317128 2022-01-24 18:14 ./usr/lib/debug/.build-id/6d/ce047c16c54738a0a51c310f70b51a6a9876dc.debug drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 1255664 2022-01-24 18:14 ./usr/lib/debug/.dwz/x86_64-linux-gnu/plast.debug drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/share/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-01-24 18:14 ./usr/share/doc/plast-dbgsym -> plast plast_2.3.2+dfsg-8_amd64.deb ---------------------------- new Debian package, version 2.0. size 604032 bytes: control archive=1064 bytes. 791 bytes, 19 lines control 572 bytes, 9 lines md5sums Package: plast Version: 2.3.2+dfsg-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3449 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libpcre2-8-0 (>= 10.22), libstdc++6 (>= 11) Built-Using: simde (= 0.7.2-6) Section: science Priority: optional Homepage: https://plast.inria.fr/ Description: Parallel Local Sequence Alignment Search Tool PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds- based heuristic comparison methods, such as the Blast suite of algorithms. . Relying on unique software architecture, PLAST takes full advantage of recent multi-core personal computers without requiring any additional hardware devices. drwxr-xr-x root/root 0 2022-01-24 18:14 ./ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/bin/ -rwxr-xr-x root/root 6493 2022-01-24 18:14 ./usr/bin/plast drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/plast/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/lib/plast/bin/ -rwxr-xr-x root/root 1733168 2022-01-24 18:14 ./usr/lib/plast/bin/plast -rwxr-xr-x root/root 1733168 2022-01-24 18:14 ./usr/lib/plast/bin/plast-sse3 drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/share/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/share/doc/plast/ -rw-r--r-- root/root 134 2022-01-24 18:14 ./usr/share/doc/plast/README.Debian -rw-r--r-- root/root 2650 2017-05-23 13:33 ./usr/share/doc/plast/README.md.gz -rw-r--r-- root/root 332 2022-01-24 18:14 ./usr/share/doc/plast/README.test -rw-r--r-- root/root 1329 2022-01-24 18:14 ./usr/share/doc/plast/changelog.Debian.gz -rw-r--r-- root/root 35399 2022-01-24 18:14 ./usr/share/doc/plast/copyright drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/share/man/ drwxr-xr-x root/root 0 2022-01-24 18:14 ./usr/share/man/man1/ -rw-r--r-- root/root 1817 2022-01-24 18:14 ./usr/share/man/man1/plast.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [560 B] Get:5 copy:/<>/apt_archive ./ Packages [646 B] Fetched 2169 B in 0s (51.0 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 6864 kB of archives. After this operation, 21.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1.2-1 [73.8 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.1.2-1 [160 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-1 [49.3 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.27-3 [540 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.27-3 [885 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40 [69.4 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b3 [11.2 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 libdevel-callchecker-perl arm64 0.008-1+b2 [15.8 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libparams-classify-perl arm64 0.015-1+b3 [25.5 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:18 http://mirror.einval.org/debian sid/main arm64 libvariable-magic-perl arm64 0.62-1+b3 [44.2 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 libb-hooks-endofscope-perl all 0.25-1 [19.5 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 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libcpanel-json-xs-perl arm64 4.27-1 [126 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-2 [36.8 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.01-2 [34.3 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-1+b5 [103 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libdata-validate-uri-perl all 0.07-1 [10.7 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b2 [25.8 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b3 [26.7 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-2 [7448 B] Get:53 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-2 [8992 B] Get:54 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:60 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-3 [60.5 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b1 [170 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.009-1 [11.7 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1 [46.1 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.21-1 [49.8 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.26-1 [28.4 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b2 [27.3 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B] Get:88 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1 [13.1 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1 [195 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.10-1 [91.0 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1 [34.2 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-5 [84.8 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6864 kB in 0s (36.9 MB/s) Selecting previously unselected package readline-common. (Reading database ... 24570 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.1.2-1_all.deb ... Unpacking readline-common (8.1.2-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../001-libreadline8_8.1.2-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1.2-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../003-libassuan0_2.5.5-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.27-3_arm64.deb ... Unpacking gpgconf (2.2.27-3) ... Selecting previously unselected package gpg. Preparing to unpack .../005-gpg_2.2.27-3_arm64.deb ... Unpacking gpg (2.2.27-3) ... Selecting previously unselected package libaliased-perl. 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Setting up libclone-perl (0.45-1+b1) ... Setting up libyaml-0-2:arm64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libcpanel-json-xs-perl:arm64 (4.27-1) ... Setting up libdevel-size-perl (0.83-1+b2) ... Setting up unzip (6.0-26) ... Setting up libyaml-libyaml-perl (0.83+ds-1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:arm64 (2.5.5-1) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-1+b5) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.21-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up libperlio-utf8-strict-perl (0.009-1) ... Setting up libio-prompt-tiny-perl (0.003-1) ... Setting up lzip (1.22-5) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libsyntax-keyword-try-perl (0.26-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.634-1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1.2-1) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.10-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:arm64 (8.1.2-1) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-validate-uri-perl (0.07-1) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up gpgconf (2.2.27-3) ... Setting up gpg (2.2.27-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.114.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.33-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 392600 Build-Time: 2121 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 128 Job: plast_2.3.2+dfsg-8 Lintian: pass Machine Architecture: arm64 Package: plast Package-Time: 2280 Source-Version: 2.3.2+dfsg-8 Space: 392600 Status: successful Version: 2.3.2+dfsg-8 -------------------------------------------------------------------------------- Finished at 2022-01-26T19:50:29Z Build needed 00:38:00, 392600k disk space