sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | plast 2.3.2+dfsg-8 (i386) Sat, 29 Jan 2022 11:35:30 +0000 | +==============================================================================+ Package: plast Version: 2.3.2+dfsg-8 Source Version: 2.3.2+dfsg-8 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-2517d2f3-d168-4ffa-b148-3ee30a6719a8' with '<>' I: NOTICE: Log filtering will replace 'build/plast-2mxXSq/resolver-oGLQkC' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main i386 Packages [8805 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9468 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8754 kB] Fetched 27.2 MB in 7s (3821 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'plast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plast.git Please use: git clone https://salsa.debian.org/med-team/plast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5749 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main plast 2.3.2+dfsg-8 (dsc) [2068 B] Get:2 http://mirror.einval.org/debian sid/main plast 2.3.2+dfsg-8 (tar) [5726 kB] Get:3 http://mirror.einval.org/debian sid/main plast 2.3.2+dfsg-8 (diff) [21.0 kB] Fetched 5749 kB in 0s (37.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/plast-2mxXSq/plast-2.3.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/plast-2mxXSq' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [429 B] Get:5 copy:/<>/apt_archive ./ Packages [515 B] Fetched 1901 B in 0s (43.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils ca-certificates ca-certificates-java cmake cmake-data cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper default-jdk:i386 default-jdk-headless:i386 default-jre:i386 default-jre-headless:i386 dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file fontconfig-config fonts-dejavu-core g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian java-common libarchive-zip-perl libarchive13 libasan6:i386 libasan6-i386-cross libasound2:i386 libasound2-data libatomic1:i386 libatomic1-i386-cross libavahi-client3 libavahi-client3:i386 libavahi-common-data libavahi-common-data:i386 libavahi-common3 libavahi-common3:i386 libblkid1:i386 libbrotli1 libbrotli1:i386 libbsd0 libbsd0:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcap2:i386 libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libcups2 libcups2:i386 libcurl4 libdbus-1-3 libdbus-1-3:i386 libdebhelper-perl libdebian-dpkgcross-perl libdrm-amdgpu1:i386 libdrm-common libdrm-intel1:i386 libdrm-nouveau2:i386 libdrm-radeon1:i386 libdrm2:i386 libedit2:i386 libelf1 libelf1:i386 libexpat1 libexpat1:i386 libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:i386 libfreetype6 libfreetype6:i386 libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgcrypt20:i386 libgif7:i386 libgl1:i386 libgl1-mesa-dri:i386 libglapi-mesa:i386 libglib2.0-0:i386 libglvnd0:i386 libglx-mesa0:i386 libglx0:i386 libgmp10:i386 libgnutls30:i386 libgomp1:i386 libgomp1-i386-cross libgpg-error0:i386 libgraphite2-3:i386 libgssapi-krb5-2:i386 libharfbuzz0b:i386 libhogweed6:i386 libicu67 libicu67:i386 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libjpeg62-turbo libjpeg62-turbo:i386 libjsoncpp25 libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblcms2-2 liblcms2-2:i386 libldap-2.4-2 libllvm13:i386 liblocale-gettext-perl liblz4-1:i386 liblzma5:i386 libmagic-mgc libmagic1 libmd0 libmd0:i386 libmount1:i386 libncurses6 libncursesw6 libnettle8:i386 libnghttp2-14 libnsl-dev:i386 libnsl2:i386 libnspr4 libnspr4:i386 libnss3 libnss3:i386 libp11-kit0:i386 libpciaccess0:i386 libpcre2-16-0:i386 libpcre2-32-0:i386 libpcre2-8-0:i386 libpcre2-dev:i386 libpcre2-posix3:i386 libpcre3:i386 libpcsclite1 libpcsclite1:i386 libpipeline1 libpng16-16 libpng16-16:i386 libprocps8 libpsl5 libquadmath0:i386 libquadmath0-i386-cross librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1:i386 libsensors-config libsensors5:i386 libsigsegv2 libsimde-dev libsqlite3-0 libsqlite3-0:i386 libssh2-1 libssl1.1:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libsystemd0:i386 libtasn1-6:i386 libtinfo6:i386 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring2:i386 libuuid1:i386 libuv1 libvulkan1:i386 libx11-6 libx11-6:i386 libx11-data libx11-xcb1:i386 libxau6 libxau6:i386 libxcb-dri2-0:i386 libxcb-dri3-0:i386 libxcb-glx0:i386 libxcb-present0:i386 libxcb-shm0:i386 libxcb-sync1:i386 libxcb-xfixes0:i386 libxcb1 libxcb1:i386 libxdmcp6 libxdmcp6:i386 libxext6 libxext6:i386 libxfixes3:i386 libxi6 libxi6:i386 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:i386 libxrender1 libxrender1:i386 libxshmfence1:i386 libxtst6 libxtst6:i386 libxxf86vm1:i386 libyaml-perl libz3-4:i386 libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db openjdk-11-jdk:i386 openjdk-11-jdk-headless:i386 openjdk-11-jre:i386 openjdk-11-jre-headless:i386 openjdk-8-jre-headless openssl po-debconf procps sensible-utils ucf x11-common zlib1g:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc ninja-build cmake-format gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-i686-linux-gnu gcc-11-doc gcc-11-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff default-jre lrzip libasound2-plugins:i386 alsa-utils glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 cups-common cups-common:i386 rng-tools:i386 gnutls-bin:i386 krb5-doc:i386 krb5-user:i386 liblcms2-utils liblcms2-utils:i386 cryptsetup-bin:i386 pciutils:i386 pcscd pcscd:i386 lm-sensors lm-sensors:i386 libstdc++-11-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser openjdk-11-demo:i386 openjdk-11-source:i386 visualvm:i386 libnss-mdns:i386 fonts-dejavu-extra:i386 fonts-ipafont-gothic:i386 fonts-ipafont-mincho:i386 fonts-wqy-microhei:i386 | fonts-wqy-zenhei:i386 fonts-indic:i386 libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei fonts-wqy-zenhei fonts-indic libmail-box-perl Recommended packages: curl | wget | lynx alsa-ucm-conf alsa-topology-conf dbus dbus:i386 libarchive-cpio-perl libglib2.0-data:i386 shared-mime-info:i386 xdg-user-dirs:i386 libgpg-error-l10n:i386 krb5-locales:i386 libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev uuid-runtime:i386 mesa-vulkan-drivers:i386 | vulkan-icd:i386 libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libxt-dev:i386 libatk-wrapper-java-jni:i386 fonts-dejavu-extra:i386 libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils ca-certificates ca-certificates-java cmake cmake-data cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper default-jdk:i386 default-jdk-headless:i386 default-jre:i386 default-jre-headless:i386 dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file fontconfig-config fonts-dejavu-core g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian java-common libarchive-zip-perl libarchive13 libasan6:i386 libasan6-i386-cross libasound2:i386 libasound2-data libatomic1:i386 libatomic1-i386-cross libavahi-client3 libavahi-client3:i386 libavahi-common-data libavahi-common-data:i386 libavahi-common3 libavahi-common3:i386 libblkid1:i386 libbrotli1 libbrotli1:i386 libbsd0 libbsd0:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcap2:i386 libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libcups2 libcups2:i386 libcurl4 libdbus-1-3 libdbus-1-3:i386 libdebhelper-perl libdebian-dpkgcross-perl libdrm-amdgpu1:i386 libdrm-common libdrm-intel1:i386 libdrm-nouveau2:i386 libdrm-radeon1:i386 libdrm2:i386 libedit2:i386 libelf1 libelf1:i386 libexpat1 libexpat1:i386 libffi8:i386 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:i386 libfreetype6 libfreetype6:i386 libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgcrypt20:i386 libgif7:i386 libgl1:i386 libgl1-mesa-dri:i386 libglapi-mesa:i386 libglib2.0-0:i386 libglvnd0:i386 libglx-mesa0:i386 libglx0:i386 libgmp10:i386 libgnutls30:i386 libgomp1:i386 libgomp1-i386-cross libgpg-error0:i386 libgraphite2-3:i386 libgssapi-krb5-2:i386 libharfbuzz0b:i386 libhogweed6:i386 libicu67 libicu67:i386 libidn2-0:i386 libio-string-perl libitm1:i386 libitm1-i386-cross libjpeg62-turbo libjpeg62-turbo:i386 libjsoncpp25 libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblcms2-2 liblcms2-2:i386 libldap-2.4-2 libllvm13:i386 liblocale-gettext-perl liblz4-1:i386 liblzma5:i386 libmagic-mgc libmagic1 libmd0 libmd0:i386 libmount1:i386 libncurses6 libncursesw6 libnettle8:i386 libnghttp2-14 libnsl-dev:i386 libnsl2:i386 libnspr4 libnspr4:i386 libnss3 libnss3:i386 libp11-kit0:i386 libpciaccess0:i386 libpcre2-16-0:i386 libpcre2-32-0:i386 libpcre2-8-0:i386 libpcre2-dev:i386 libpcre2-posix3:i386 libpcre3:i386 libpcsclite1 libpcsclite1:i386 libpipeline1 libpng16-16 libpng16-16:i386 libprocps8 libpsl5 libquadmath0:i386 libquadmath0-i386-cross librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libselinux1:i386 libsensors-config libsensors5:i386 libsigsegv2 libsimde-dev libsqlite3-0 libsqlite3-0:i386 libssh2-1 libssl1.1:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libsystemd0:i386 libtasn1-6:i386 libtinfo6:i386 libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring2:i386 libuuid1:i386 libuv1 libvulkan1:i386 libx11-6 libx11-6:i386 libx11-data libx11-xcb1:i386 libxau6 libxau6:i386 libxcb-dri2-0:i386 libxcb-dri3-0:i386 libxcb-glx0:i386 libxcb-present0:i386 libxcb-shm0:i386 libxcb-sync1:i386 libxcb-xfixes0:i386 libxcb1 libxcb1:i386 libxdmcp6 libxdmcp6:i386 libxext6 libxext6:i386 libxfixes3:i386 libxi6 libxi6:i386 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:i386 libxrender1 libxrender1:i386 libxshmfence1:i386 libxtst6 libxtst6:i386 libxxf86vm1:i386 libyaml-perl libz3-4:i386 libzstd1:i386 linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db openjdk-11-jdk:i386 openjdk-11-jdk-headless:i386 openjdk-11-jre:i386 openjdk-11-jre-headless:i386 openjdk-8-jre-headless openssl po-debconf procps sbuild-build-depends-main-dummy:i386 sensible-utils ucf x11-common zlib1g:i386 0 upgraded, 255 newly installed, 0 to remove and 0 not upgraded. Need to get 528 MB of archives. After this operation, 1210 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main i386 gcc-11-base i386 11.2.0-14 [207 kB] Get:4 http://mirror.einval.org/debian sid/main i386 libgcc-s1 i386 11.2.0-14 [49.8 kB] Get:5 http://mirror.einval.org/debian sid/main i386 libc6 i386 2.33-5 [2788 kB] Get:6 http://mirror.einval.org/debian sid/main i386 libcap2 i386 1:2.44-1 [24.5 kB] Get:7 http://mirror.einval.org/debian sid/main i386 libgpg-error0 i386 1.43-3 [87.3 kB] Get:8 http://mirror.einval.org/debian sid/main i386 libgcrypt20 i386 1.9.4-5 [648 kB] Get:9 http://mirror.einval.org/debian sid/main i386 liblz4-1 i386 1.9.3-2 [59.0 kB] Get:10 http://mirror.einval.org/debian sid/main i386 liblzma5 i386 5.2.5-2 [176 kB] Get:11 http://mirror.einval.org/debian sid/main i386 libzstd1 i386 1.4.8+dfsg-3 [307 kB] Get:12 http://mirror.einval.org/debian sid/main i386 libsystemd0 i386 250.3-2 [423 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libncurses6 arm64 6.3-2 [92.9 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libncursesw6 arm64 6.3-2 [120 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libprocps8 arm64 2:3.3.17-6 [62.1 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 procps arm64 2:3.3.17-6 [500 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 openssl arm64 1.1.1m-1 [829 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 ca-certificates all 20211016 [156 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-2 [295 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-2 [124 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-2 [66.8 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.37.3-1+b1 [145 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.5-1 [35.8 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.9.4-4 [1336 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.14-1 [37.0 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.1 [823 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 java-common all 0.72 [14.5 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libavahi-common-data arm64 0.8-5 [123 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libavahi-common3 arm64 0.8-5 [57.1 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libdbus-1-3 arm64 1.12.20-3 [209 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libavahi-client3 arm64 0.8-5 [60.6 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libcups2 arm64 2.3.3op2-7 [334 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.2-1 [152 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libexpat1 arm64 2.4.3-3 [92.3 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libbrotli1 arm64 1.0.9-2+b3 [270 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libfreetype6 arm64 2.11.1+dfsg-1 [374 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 fontconfig-config all 2.13.1-4.3 [281 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libfontconfig1 arm64 2.13.1-4.3 [346 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libnspr4 arm64 2:4.32-3 [105 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.37.2-2 [771 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libnss3 arm64 2:3.73.1-1 [1217 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libpcsclite1 arm64 1.9.5-1 [59.6 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libmd0 arm64 1.0.4-1 [29.5 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libbsd0 arm64 0.11.5-1+b1 [111 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libx11-data all 2:1.7.2-2 [311 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libx11-6 arm64 2:1.7.2-2+b1 [751 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1 [51.6 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libxi6 arm64 2:1.8-1 [82.1 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 x11-common all 1:7.7+23 [252 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libxtst6 arm64 2:1.2.3-1 [26.7 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 openjdk-8-jre-headless arm64 8u312-b07-1 [27.8 MB] Get:68 http://mirror.einval.org/debian sid/main arm64 ca-certificates-java all 20190909 [15.7 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.12+dfsg-5+b1 [633 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libarchive13 arm64 3.5.2-1 [322 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg2-3 [74.4 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libsasl2-2 arm64 2.1.27+dfsg2-3 [110 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libldap-2.4-2 arm64 2.4.59+dfsg-1 [222 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libssh2-1 arm64 1.10.0-2 [172 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libcurl4 arm64 7.81.0-1 [336 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libjsoncpp25 arm64 1.9.5-2 [72.4 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 librhash0 arm64 1.4.2-1 [127 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libuv1 arm64 1.43.0-1 [131 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 dh-elpa-helper all 2.0.10 [11.3 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 emacsen-common all 3.0.4 [19.3 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 cmake-data all 3.22.1-1 [1905 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 cmake arm64 3.22.1-1+b1 [5437 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 gcc-11-i686-linux-gnu-base arm64 11.2.0-9cross1 [205 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 cpp-11-i686-linux-gnu arm64 11.2.0-9cross1 [7856 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 cpp-i686-linux-gnu arm64 4:11.2.0-2 [17.0 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 binutils-i686-linux-gnu arm64 2.37.90.20220123-2 [2329 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 libc6-i386-cross all 2.33-1cross1 [1526 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-i386-cross all 11.2.0-9cross1 [49.9 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 libgomp1-i386-cross all 11.2.0-9cross1 [108 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libitm1-i386-cross all 11.2.0-9cross1 [27.3 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libatomic1-i386-cross all 11.2.0-9cross1 [7552 B] Get:98 http://mirror.einval.org/debian sid/main arm64 libasan6-i386-cross all 11.2.0-9cross1 [1927 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libstdc++6-i386-cross all 11.2.0-9cross1 [576 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 libubsan1-i386-cross all 11.2.0-9cross1 [813 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 libquadmath0-i386-cross all 11.2.0-9cross1 [226 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-i386-cross all 11.2.0-9cross1 [2331 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 gcc-11-i686-linux-gnu arm64 11.2.0-9cross1 [15.6 MB] Get:104 http://mirror.einval.org/debian sid/main arm64 gcc-i686-linux-gnu arm64 4:11.2.0-2 [1452 B] Get:105 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-i386-cross all 5.15.5-1cross1 [1576 kB] Get:106 http://mirror.einval.org/debian sid/main arm64 libc6-dev-i386-cross all 2.33-1cross1 [2170 kB] Get:107 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-i386-cross all 11.2.0-9cross1 [2002 kB] Get:108 http://mirror.einval.org/debian sid/main arm64 g++-11-i686-linux-gnu arm64 11.2.0-9cross1 [8672 kB] Get:109 http://mirror.einval.org/debian sid/main arm64 g++-i686-linux-gnu arm64 4:11.2.0-2 [1168 B] Get:110 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:111 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:112 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:113 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:114 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:115 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0207+dfsg-2 [328 kB] Get:116 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:117 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:118 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:119 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:120 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:121 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:122 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:123 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-i386 all 12.9 [6704 B] Get:124 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.6 [193 kB] Get:125 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:126 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:127 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:128 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:129 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:130 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:131 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.186-1 [177 kB] Get:132 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:133 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:134 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:135 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:136 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.6 [1054 kB] Get:137 http://mirror.einval.org/debian sid/main i386 libavahi-common-data i386 0.8-5 [123 kB] Get:138 http://mirror.einval.org/debian sid/main i386 libavahi-common3 i386 0.8-5 [60.1 kB] Get:139 http://mirror.einval.org/debian sid/main i386 libdbus-1-3 i386 1.12.20-3 [231 kB] Get:140 http://mirror.einval.org/debian sid/main i386 libavahi-client3 i386 0.8-5 [64.3 kB] Get:141 http://mirror.einval.org/debian sid/main i386 libgmp10 i386 2:6.2.1+dfsg-3 [570 kB] Get:142 http://mirror.einval.org/debian sid/main i386 libnettle8 i386 3.7.3-1 [286 kB] Get:143 http://mirror.einval.org/debian sid/main i386 libhogweed6 i386 3.7.3-1 [323 kB] Get:144 http://mirror.einval.org/debian sid/main i386 libunistring2 i386 0.9.10-6 [391 kB] Get:145 http://mirror.einval.org/debian sid/main i386 libidn2-0 i386 2.3.2-2 [96.4 kB] Get:146 http://mirror.einval.org/debian sid/main i386 libffi8 i386 3.4.2-4 [22.7 kB] Get:147 http://mirror.einval.org/debian sid/main i386 libp11-kit0 i386 0.24.0-6 [344 kB] Get:148 http://mirror.einval.org/debian sid/main i386 libtasn1-6 i386 4.18.0-4 [58.2 kB] Get:149 http://mirror.einval.org/debian sid/main i386 libgnutls30 i386 3.7.3-4+b1 [1382 kB] Get:150 http://mirror.einval.org/debian sid/main i386 libcom-err2 i386 1.46.5-2 [76.1 kB] Get:151 http://mirror.einval.org/debian sid/main i386 libkrb5support0 i386 1.18.3-7 [68.6 kB] Get:152 http://mirror.einval.org/debian sid/main i386 libk5crypto3 i386 1.18.3-7 [117 kB] Get:153 http://mirror.einval.org/debian sid/main i386 libkeyutils1 i386 1.6.1-2 [15.9 kB] Get:154 http://mirror.einval.org/debian sid/main i386 libssl1.1 i386 1.1.1m-1 [1550 kB] Get:155 http://mirror.einval.org/debian sid/main i386 libkrb5-3 i386 1.18.3-7 [390 kB] Get:156 http://mirror.einval.org/debian sid/main i386 libgssapi-krb5-2 i386 1.18.3-7 [176 kB] Get:157 http://mirror.einval.org/debian sid/main i386 zlib1g i386 1:1.2.11.dfsg-2 [93.1 kB] Get:158 http://mirror.einval.org/debian sid/main i386 libcups2 i386 2.3.3op2-7 [366 kB] Get:159 http://mirror.einval.org/debian sid/main i386 liblcms2-2 i386 2.12~rc1-2 [161 kB] Get:160 http://mirror.einval.org/debian sid/main i386 libjpeg62-turbo i386 1:2.1.2-1 [170 kB] Get:161 http://mirror.einval.org/debian sid/main i386 libexpat1 i386 2.4.3-3 [108 kB] Get:162 http://mirror.einval.org/debian sid/main i386 libbrotli1 i386 1.0.9-2+b3 [273 kB] Get:163 http://mirror.einval.org/debian sid/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get:164 http://mirror.einval.org/debian sid/main i386 libfreetype6 i386 2.11.1+dfsg-1 [412 kB] Get:165 http://mirror.einval.org/debian sid/main i386 libuuid1 i386 2.37.3-1+b1 [86.3 kB] Get:166 http://mirror.einval.org/debian sid/main i386 libfontconfig1 i386 2.13.1-4.3 [361 kB] Get:167 http://mirror.einval.org/debian sid/main i386 libnspr4 i386 2:4.32-3 [122 kB] Get:168 http://mirror.einval.org/debian sid/main i386 libsqlite3-0 i386 3.37.2-2 [889 kB] Get:169 http://mirror.einval.org/debian sid/main i386 libnss3 i386 2:3.73.1-1 [1408 kB] Get:170 http://mirror.einval.org/debian sid/main arm64 libasound2-data all 1.2.6.1-1 [38.7 kB] Get:171 http://mirror.einval.org/debian sid/main i386 libasound2 i386 1.2.6.1-1 [401 kB] Get:172 http://mirror.einval.org/debian sid/main i386 libblkid1 i386 2.37.3-1+b1 [215 kB] Get:173 http://mirror.einval.org/debian sid/main i386 libpcre2-8-0 i386 10.39-3 [251 kB] Get:174 http://mirror.einval.org/debian sid/main i386 libselinux1 i386 3.3-1+b1 [93.3 kB] Get:175 http://mirror.einval.org/debian sid/main i386 libmount1 i386 2.37.3-1+b1 [230 kB] Get:176 http://mirror.einval.org/debian sid/main i386 libpcre3 i386 2:8.39-13 [342 kB] Get:177 http://mirror.einval.org/debian sid/main i386 libglib2.0-0 i386 2.70.3-1 [1469 kB] Get:178 http://mirror.einval.org/debian sid/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get:179 http://mirror.einval.org/debian sid/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB] Get:180 http://mirror.einval.org/debian sid/main i386 libpcsclite1 i386 1.9.5-1 [61.5 kB] Get:181 http://mirror.einval.org/debian sid/main i386 libstdc++6 i386 11.2.0-14 [617 kB] Get:182 http://mirror.einval.org/debian sid/main i386 openjdk-11-jre-headless i386 11.0.14+9-1 [37.0 MB] Get:183 http://mirror.einval.org/debian sid/main i386 default-jre-headless i386 2:1.11-72 [10.9 kB] Get:184 http://mirror.einval.org/debian sid/main i386 libglvnd0 i386 1.4.0-1 [44.1 kB] Get:185 http://mirror.einval.org/debian sid/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get:186 http://mirror.einval.org/debian sid/main i386 libmd0 i386 1.0.4-1 [30.6 kB] Get:187 http://mirror.einval.org/debian sid/main i386 libbsd0 i386 0.11.5-1+b1 [116 kB] Get:188 http://mirror.einval.org/debian sid/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get:189 http://mirror.einval.org/debian sid/main i386 libxcb1 i386 1.14-3 [144 kB] Get:190 http://mirror.einval.org/debian sid/main i386 libx11-6 i386 2:1.7.2-2+b1 [797 kB] Get:191 http://mirror.einval.org/debian sid/main arm64 libdrm-common all 2.4.109-2 [15.3 kB] Get:192 http://mirror.einval.org/debian sid/main i386 libdrm2 i386 2.4.109-2 [47.7 kB] Get:193 http://mirror.einval.org/debian sid/main i386 libglapi-mesa i386 21.3.5-1 [75.0 kB] Get:194 http://mirror.einval.org/debian sid/main i386 libx11-xcb1 i386 2:1.7.2-2+b1 [203 kB] Get:195 http://mirror.einval.org/debian sid/main i386 libxcb-dri2-0 i386 1.14-3 [103 kB] Get:196 http://mirror.einval.org/debian sid/main i386 libxcb-dri3-0 i386 1.14-3 [103 kB] Get:197 http://mirror.einval.org/debian sid/main i386 libxcb-glx0 i386 1.14-3 [120 kB] Get:198 http://mirror.einval.org/debian sid/main i386 libxcb-present0 i386 1.14-3 [101 kB] Get:199 http://mirror.einval.org/debian sid/main i386 libxcb-shm0 i386 1.14-3 [102 kB] Get:200 http://mirror.einval.org/debian sid/main i386 libxcb-sync1 i386 1.14-3 [105 kB] Get:201 http://mirror.einval.org/debian sid/main i386 libxcb-xfixes0 i386 1.14-3 [105 kB] Get:202 http://mirror.einval.org/debian sid/main i386 libxext6 i386 2:1.3.4-1 [55.4 kB] Get:203 http://mirror.einval.org/debian sid/main i386 libxfixes3 i386 1:5.0.3-2 [22.6 kB] Get:204 http://mirror.einval.org/debian sid/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get:205 http://mirror.einval.org/debian sid/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get:206 http://mirror.einval.org/debian sid/main i386 libdrm-amdgpu1 i386 2.4.109-2 [32.4 kB] Get:207 http://mirror.einval.org/debian sid/main i386 libpciaccess0 i386 0.16-3 [55.8 kB] Get:208 http://mirror.einval.org/debian sid/main i386 libdrm-intel1 i386 2.4.109-2 [75.7 kB] Get:209 http://mirror.einval.org/debian sid/main i386 libdrm-nouveau2 i386 2.4.109-2 [29.2 kB] Get:210 http://mirror.einval.org/debian sid/main i386 libdrm-radeon1 i386 2.4.109-2 [31.9 kB] Get:211 http://mirror.einval.org/debian sid/main i386 libelf1 i386 0.186-1 [184 kB] Get:212 http://mirror.einval.org/debian sid/main i386 libatomic1 i386 11.2.0-14 [7720 B] Get:213 http://mirror.einval.org/debian sid/main i386 libtinfo6 i386 6.3-2 [350 kB] Get:214 http://mirror.einval.org/debian sid/main i386 libedit2 i386 3.1-20210910-1 [101 kB] Get:215 http://mirror.einval.org/debian sid/main i386 libicu67 i386 67.1-7 [8775 kB] Get:216 http://mirror.einval.org/debian sid/main i386 libxml2 i386 2.9.12+dfsg-5+b1 [733 kB] Get:217 http://mirror.einval.org/debian sid/main i386 libz3-4 i386 4.8.12-1+b1 [7758 kB] Get:218 http://mirror.einval.org/debian sid/main i386 libllvm13 i386 1:13.0.1~+rc3-1~exp1+b1 [20.6 MB] Get:219 http://mirror.einval.org/debian sid/main arm64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:220 http://mirror.einval.org/debian sid/main i386 libsensors5 i386 1:3.6.0-7 [53.2 kB] Get:221 http://mirror.einval.org/debian sid/main i386 libvulkan1 i386 1.2.198.1-2 [110 kB] Get:222 http://mirror.einval.org/debian sid/main i386 libgl1-mesa-dri i386 21.3.5-1 [11.1 MB] Get:223 http://mirror.einval.org/debian sid/main i386 libglx-mesa0 i386 21.3.5-1 [192 kB] Get:224 http://mirror.einval.org/debian sid/main i386 libglx0 i386 1.4.0-1 [39.0 kB] Get:225 http://mirror.einval.org/debian sid/main i386 libgl1 i386 1.4.0-1 [83.7 kB] Get:226 http://mirror.einval.org/debian sid/main i386 libgif7 i386 5.1.9-2 [46.5 kB] Get:227 http://mirror.einval.org/debian sid/main i386 libxi6 i386 2:1.8-1 [85.9 kB] Get:228 http://mirror.einval.org/debian sid/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get:229 http://mirror.einval.org/debian sid/main i386 libxtst6 i386 2:1.2.3-1 [28.3 kB] Get:230 http://mirror.einval.org/debian sid/main i386 openjdk-11-jre i386 11.0.14+9-1 [176 kB] Get:231 http://mirror.einval.org/debian sid/main i386 default-jre i386 2:1.11-72 [1044 B] Get:232 http://mirror.einval.org/debian sid/main i386 openjdk-11-jdk-headless i386 11.0.14+9-1 [283 MB] Get:233 http://mirror.einval.org/debian sid/main i386 default-jdk-headless i386 2:1.11-72 [1100 B] Get:234 http://mirror.einval.org/debian sid/main i386 openjdk-11-jdk i386 11.0.14+9-1 [7032 kB] Get:235 http://mirror.einval.org/debian sid/main i386 default-jdk i386 2:1.11-72 [1052 B] Get:236 http://mirror.einval.org/debian sid/main i386 libasan6 i386 11.2.0-14 [1934 kB] Get:237 http://mirror.einval.org/debian sid/main i386 linux-libc-dev i386 5.15.15-1 [1478 kB] Get:238 http://mirror.einval.org/debian sid/main i386 libcrypt1 i386 1:4.4.27-1.1 [99.5 kB] Get:239 http://mirror.einval.org/debian sid/main i386 libcrypt-dev i386 1:4.4.27-1.1 [129 kB] Get:240 http://mirror.einval.org/debian sid/main i386 libtirpc3 i386 1.3.2-2 [91.3 kB] Get:241 http://mirror.einval.org/debian sid/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:242 http://mirror.einval.org/debian sid/main i386 libtirpc-dev i386 1.3.2-2 [201 kB] Get:243 http://mirror.einval.org/debian sid/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:244 http://mirror.einval.org/debian sid/main i386 libc6-dev i386 2.33-5 [2173 kB] Get:245 http://mirror.einval.org/debian sid/main i386 libgomp1 i386 11.2.0-14 [111 kB] Get:246 http://mirror.einval.org/debian sid/main i386 libitm1 i386 11.2.0-14 [27.7 kB] Get:247 http://mirror.einval.org/debian sid/main i386 libubsan1 i386 11.2.0-14 [813 kB] Get:248 http://mirror.einval.org/debian sid/main i386 libquadmath0 i386 11.2.0-14 [226 kB] Get:249 http://mirror.einval.org/debian sid/main i386 libgcc-11-dev i386 11.2.0-14 [2331 kB] Get:250 http://mirror.einval.org/debian sid/main i386 libpcre2-16-0 i386 10.39-3 [236 kB] Get:251 http://mirror.einval.org/debian sid/main i386 libpcre2-32-0 i386 10.39-3 [224 kB] Get:252 http://mirror.einval.org/debian sid/main i386 libpcre2-posix3 i386 10.39-3 [52.2 kB] Get:253 http://mirror.einval.org/debian sid/main i386 libpcre2-dev i386 10.39-3 [746 kB] Get:254 http://mirror.einval.org/debian sid/main arm64 libsimde-dev all 0.7.2-6 [259 kB] Get:255 http://mirror.einval.org/debian sid/main i386 libstdc++-11-dev i386 11.2.0-14 [2028 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 528 MB in 7s (72.9 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12367 files and directories currently installed.) Preparing to unpack .../0-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-11-base:i386. Preparing to unpack .../1-gcc-11-base_11.2.0-14_i386.deb ... Unpacking gcc-11-base:i386 (11.2.0-14) ... Selecting previously unselected package libgcc-s1:i386. Preparing to unpack .../2-libgcc-s1_11.2.0-14_i386.deb ... Unpacking libgcc-s1:i386 (11.2.0-14) ... Selecting previously unselected package libc6:i386. Preparing to unpack .../3-libc6_2.33-5_i386.deb ... Unpacking libc6:i386 (2.33-5) ... Selecting previously unselected package libcap2:i386. Preparing to unpack .../4-libcap2_1%3a2.44-1_i386.deb ... Unpacking libcap2:i386 (1:2.44-1) ... Selecting previously unselected package libgpg-error0:i386. Preparing to unpack .../5-libgpg-error0_1.43-3_i386.deb ... Unpacking libgpg-error0:i386 (1.43-3) ... 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Selecting previously unselected package libsystemd0:i386. (Reading database ... 12691 files and directories currently installed.) Preparing to unpack .../000-libsystemd0_250.3-2_i386.deb ... Unpacking libsystemd0:i386 (250.3-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../001-libncurses6_6.3-2_arm64.deb ... Unpacking libncurses6:arm64 (6.3-2) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../002-libncursesw6_6.3-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.3-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-6_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-6) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-6_arm64.deb ... Unpacking procps (2:3.3.17-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.17_all.deb ... 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Unpacking sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libexpat1:arm64 (2.4.3-3) ... Setting up libexpat1:i386 (2.4.3-3) ... Setting up gcc-11-i686-linux-gnu-base:arm64 (11.2.0-9cross1) ... Setting up libpipeline1:arm64 (1.5.5-1) ... Setting up libgraphite2-3:i386 (1.3.14-1) ... Setting up libsimde-dev (0.7.2-6) ... Setting up liblcms2-2:arm64 (2.12~rc1-2) ... Setting up liblcms2-2:i386 (2.12~rc1-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libkeyutils1:i386 (1.6.1-2) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up bsdextrautils (2.37.3-1+b1) ... Setting up java-common (0.72) ... Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up cpp-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:i386 (1.4.0-1) ... Setting up libssl1.1:i386 (1.1.1m-1) ... Setting up binutils-i686-linux-gnu (2.37.90.20220123-2) ... Setting up libdebhelper-perl (13.6) ... Setting up libbrotli1:arm64 (1.0.9-2+b3) ... Setting up libbrotli1:i386 (1.0.9-2+b3) ... Setting up libsqlite3-0:arm64 (3.37.2-2) ... Setting up libsqlite3-0:i386 (3.37.2-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-7) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.41-2) ... Setting up libunistring2:i386 (0.9.10-6) ... Setting up linux-libc-dev:i386 (5.15.15-1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up zlib1g:i386 (1:1.2.11.dfsg-2) ... Setting up libcrypt1:i386 (1:4.4.27-1.1) ... Setting up libidn2-0:i386 (2.3.2-2) ... Setting up libcom-err2:i386 (1.46.5-2) ... Setting up file (1:5.41-2) ... Setting up libgomp1:i386 (11.2.0-14) ... Setting up libyaml-perl (1.30-1) ... Setting up libpcre2-16-0:i386 (10.39-3) ... Setting up libsystemd0:i386 (250.3-2) ... Setting up libasan6:i386 (11.2.0-14) ... Setting up libkrb5support0:i386 (1.18.3-7) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg2-3) ... Setting up libasound2-data (1.2.6.1-1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libpcre3:i386 (2:8.39-13) ... Setting up linux-libc-dev-i386-cross (5.15.5-1cross1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:i386 (10.39-3) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libuv1:arm64 (1.43.0-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.2-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.2-1) ... Setting up emacsen-common (3.0.4) ... Setting up libnettle8:i386 (3.7.3-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up libnspr4:arm64 (2:4.32-3) ... Setting up libnspr4:i386 (2:4.32-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up dh-elpa-helper (2.0.10) ... Setting up libgmp10:i386 (2:6.2.1+dfsg-3) ... Setting up libavahi-common-data:arm64 (0.8-5) ... Setting up libavahi-common-data:i386 (0.8-5) ... Setting up libncurses6:arm64 (6.3-2) ... Setting up libdbus-1-3:arm64 (1.12.20-3) ... Setting up libdbus-1-3:i386 (1.12.20-3) ... Setting up libsigsegv2:arm64 (2.14-1) ... Setting up libquadmath0:i386 (11.2.0-14) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up libpng16-16:i386 (1.6.37-3) ... Setting up libatomic1:i386 (11.2.0-14) ... Setting up libuuid1:i386 (2.37.3-1+b1) ... Setting up autopoint (0.21-4) ... Setting up libjsoncpp25:arm64 (1.9.5-2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libpcsclite1:arm64 (1.9.5-1) ... Setting up libpcsclite1:i386 (1.9.5-1) ... Setting up libsensors5:i386 (1:3.6.0-7) ... Setting up libpcre2-8-0:i386 (10.39-3) ... Setting up libncursesw6:arm64 (6.3-2) ... Setting up libk5crypto3:i386 (1.18.3-7) ... Setting up libglapi-mesa:i386 (21.3.5-1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg2-3) ... Setting up libvulkan1:i386 (1.2.198.1-2) ... Setting up libgif7:i386 (5.1.9-2) ... Setting up libffi8:i386 (3.4.2-4) ... Setting up libpcre2-posix3:i386 (10.39-3) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up libmd0:arm64 (1.0.4-1) ... Setting up libmd0:i386 (1.0.4-1) ... Setting up sensible-utils (0.0.17) ... Setting up libxshmfence1:i386 (1.3-1) ... Setting up librhash0:arm64 (1.4.2-1) ... Setting up libcrypt-dev:i386 (1:4.4.27-1.1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libasound2:i386 (1.2.6.1-1) ... Setting up libtasn1-6:i386 (4.18.0-4) ... Setting up libc6-i386-cross (2.33-1cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.10.0-2) ... Setting up cmake-data (3.22.1-1) ... Setting up libkrb5-3:i386 (1.18.3-7) ... Setting up cpp-i686-linux-gnu (4:11.2.0-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up openssl (1.1.1m-1) ... Setting up libbsd0:arm64 (0.11.5-1+b1) ... Setting up libbsd0:i386 (0.11.5-1+b1) ... Setting up libquadmath0-i386-cross (11.2.0-9cross1) ... Setting up libdrm-common (2.4.109-2) ... Setting up libelf1:arm64 (0.186-1) ... Setting up libelf1:i386 (0.186-1) ... Setting up libxml2:arm64 (2.9.12+dfsg-5+b1) ... Setting up libblkid1:i386 (2.37.3-1+b1) ... Setting up libstdc++6:i386 (11.2.0-14) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libprocps8:arm64 (2:3.3.17-6) ... Setting up libitm1:i386 (11.2.0-14) ... Setting up libtinfo6:i386 (6.3-2) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libpciaccess0:i386 (0.16-3) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libxcb1:arm64 (1.14-3) ... Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libhogweed6:i386 (3.7.3-1) ... Setting up libxcb-xfixes0:i386 (1.14-3) ... Setting up libicu67:i386 (67.1-7) ... Setting up libtool (2.4.6-15) ... Setting up libatomic1-i386-cross (11.2.0-9cross1) ... Setting up libarchive13:arm64 (3.5.2-1) ... Setting up libxcb-glx0:i386 (1.14-3) ... Setting up libedit2:i386 (3.1-20210910-1) ... Setting up libavahi-common3:arm64 (0.8-5) ... Setting up libavahi-common3:i386 (0.8-5) ... Setting up libldap-2.4-2:arm64 (2.4.59+dfsg-1) ... Setting up m4 (1.4.18-5) ... Setting up libnss3:arm64 (2:3.73.1-1) ... Setting up libnss3:i386 (2:3.73.1-1) ... Setting up libgomp1-i386-cross (11.2.0-9cross1) ... Setting up libxcb-shm0:i386 (1.14-3) ... Setting up libc6-dev-i386-cross (2.33-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:i386 (1.14-3) ... Setting up libgcc-s1-i386-cross (11.2.0-9cross1) ... Setting up libselinux1:i386 (3.3-1+b1) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libz3-4:i386 (4.8.12-1+b1) ... Setting up libasan6-i386-cross (11.2.0-9cross1) ... Setting up libfreetype6:arm64 (2.11.1+dfsg-1) ... Setting up libfreetype6:i386 (2.11.1+dfsg-1) ... Setting up libxcb-sync1:i386 (1.14-3) ... Setting up libitm1-i386-cross (11.2.0-9cross1) ... Setting up libp11-kit0:i386 (0.24.0-6) ... Setting up libgssapi-krb5-2:i386 (1.18.3-7) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up libubsan1:i386 (11.2.0-14) ... Setting up libxcb-dri2-0:i386 (1.14-3) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libgcc-11-dev:i386 (11.2.0-14) ... Setting up libdrm2:i386 (2.4.109-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up libmount1:i386 (2.37.3-1+b1) ... Setting up procps (2:3.3.17-6) ... Setting up libcurl4:arm64 (7.81.0-1) ... Setting up libx11-6:arm64 (2:1.7.2-2+b1) ... Setting up libx11-6:i386 (2:1.7.2-2+b1) ... Setting up libxml2:i386 (2.9.12+dfsg-5+b1) ... Setting up libavahi-client3:arm64 (0.8-5) ... Setting up libavahi-client3:i386 (0.8-5) ... Setting up libdrm-amdgpu1:i386 (2.4.109-2) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtirpc3:i386 (1.3.2-2) ... Setting up libxcb-dri3-0:i386 (1.14-3) ... Setting up libx11-xcb1:i386 (2:1.7.2-2+b1) ... Setting up libdrm-nouveau2:i386 (2.4.109-2) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libglib2.0-0:i386 (2.70.3-1) ... /var/lib/dpkg/info/libglib2.0-0:i386.postinst: 58: /usr/lib/i386-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:i386.postinst: 59: /usr/lib/i386-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libdrm-radeon1:i386 (2.4.109-2) ... Setting up fontconfig-config (2.13.1-4.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libdrm-intel1:i386 (2.4.109-2) ... Setting up libxext6:arm64 (2:1.3.4-1) ... Setting up libxext6:i386 (2:1.3.4-1) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++6-i386-cross (11.2.0-9cross1) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up dh-autoreconf (20) ... Setting up libtirpc-dev:i386 (1.3.2-2) ... Setting up libgnutls30:i386 (3.7.3-4+b1) ... Setting up libxfixes3:i386 (1:5.0.3-2) ... Setting up libllvm13:i386 (1:13.0.1~+rc3-1~exp1+b1) ... Setting up libxml-libxml-perl (2.0207+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcups2:arm64 (2.3.3op2-7) ... Setting up libcups2:i386 (2.3.3op2-7) ... Setting up libnsl2:i386 (1.3.0-2) ... Setting up cmake (3.22.1-1+b1) ... Setting up libharfbuzz0b:i386 (2.7.4-1) ... Setting up libfontconfig1:arm64 (2.13.1-4.3) ... Setting up libfontconfig1:i386 (2.13.1-4.3) ... Setting up libxi6:arm64 (2:1.8-1) ... Setting up libxi6:i386 (2:1.8-1) ... Setting up libxtst6:arm64 (2:1.2.3-1) ... Setting up libxtst6:i386 (2:1.2.3-1) ... Setting up libgl1-mesa-dri:i386 (21.3.5-1) ... Setting up debhelper (13.6) ... Setting up libubsan1-i386-cross (11.2.0-9cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libnsl-dev:i386 (1.3.0-2) ... Setting up libc6-dev:i386 (2.33-5) ... Setting up libglx-mesa0:i386 (21.3.5-1) ... Setting up libpcre2-dev:i386 (10.39-3) ... Setting up libglx0:i386 (1.4.0-1) ... Setting up libgcc-11-dev-i386-cross (11.2.0-9cross1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up gcc-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up libgl1:i386 (1.4.0-1) ... Setting up libstdc++-11-dev:i386 (11.2.0-14) ... Setting up gcc-i686-linux-gnu (4:11.2.0-2) ... Setting up libstdc++-11-dev-i386-cross (11.2.0-9cross1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up g++-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up g++-i686-linux-gnu (4:11.2.0-2) ... Setting up crossbuild-essential-i386 (12.9) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Warning: there was a problem reading the certificate file /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem. Message: /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem (No such file or directory) Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Processing triggers for libc-bin (2.33-5) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Setting up openjdk-8-jre-headless:arm64 (8u312-b07-1) ... update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-8-openjdk-arm64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre-headless:i386 (11.0.14+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode /var/lib/dpkg/info/openjdk-11-jre-headless:i386.postinst: 105: /usr/lib/jvm/java-11-openjdk-i386/bin/java: Exec format error ignoring dump failure /var/lib/dpkg/info/openjdk-11-jre-headless:i386.postinst: 117: /usr/lib/jvm/java-11-openjdk-i386/bin/java: Exec format error ignoring dump failure Setting up openjdk-11-jre:i386 (11.0.14+9-1) ... Setting up openjdk-11-jdk-headless:i386 (11.0.14+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up openjdk-11-jdk:i386 (11.0.14+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jre-headless:i386 (2:1.11-72) ... Setting up default-jre:i386 (2:1.11-72) ... Setting up default-jdk-headless:i386 (2:1.11-72) ... Setting up default-jdk:i386 (2:1.11-72) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.37.90.20220123-2 dpkg-dev_1.21.1 g++-11_11.2.0-14 gcc-11_11.2.0-14 libc6-dev_2.33-5 libstdc++-11-dev_11.2.0-14 libstdc++-11-dev-i386-cross_11.2.0-9cross1 libstdc++6_11.2.0-14 libstdc++6-i386-cross_11.2.0-9cross1 linux-libc-dev_5.15.15-1 Package versions: adduser_3.118 apt_2.3.14 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.90.20220123-2 binutils-aarch64-linux-gnu_2.37.90.20220123-2 binutils-common_2.37.90.20220123-2 binutils-i686-linux-gnu_2.37.90.20220123-2 bsdextrautils_2.37.3-1+b1 bsdutils_1:2.37.3-1+b1 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 ca-certificates-java_20190909 cmake_3.22.1-1+b1 cmake-data_3.22.1-1 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-14 cpp-11-i686-linux-gnu_11.2.0-9cross1 cpp-i686-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-i386_12.9 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.7-0.1 default-jdk_2:1.11-72 default-jdk-headless_2:1.11-72 default-jre_2:1.11-72 default-jre-headless_2:1.11-72 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 emacsen-common_3.0.4 fakeroot_1.27-1 file_1:5.41-2 findutils_4.8.0-1 fontconfig-config_2.13.1-4.3 fonts-dejavu-core_2.37-2 g++_4:11.2.0-2 g++-11_11.2.0-14 g++-11-i686-linux-gnu_11.2.0-9cross1 g++-i686-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-14 gcc-11_11.2.0-14 gcc-11-base_11.2.0-14 gcc-11-cross-base_11.2.0-9cross1 gcc-11-i686-linux-gnu_11.2.0-9cross1 gcc-11-i686-linux-gnu-base_11.2.0-9cross1 gcc-i686-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 java-common_0.72 libacl1_2.3.1-1 libapt-pkg6.0_2.3.14 libarchive-zip-perl_1.68-1 libarchive13_3.5.2-1 libasan6_11.2.0-14 libasan6-i386-cross_11.2.0-9cross1 libasound2_1.2.6.1-1 libasound2-data_1.2.6.1-1 libatomic1_11.2.0-14 libatomic1-i386-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1+b1 libavahi-client3_0.8-5 libavahi-common-data_0.8-5 libavahi-common3_0.8-5 libbinutils_2.37.90.20220123-2 libblkid1_2.37.3-1+b1 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libsensors5_1:3.6.0-7 libsepol2_3.3-1 libsigsegv2_2.14-1 libsimde-dev_0.7.2-6 libsmartcols1_2.37.3-1+b1 libsqlite3-0_3.37.2-2 libssh2-1_1.10.0-2 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-14 libstdc++-11-dev-i386-cross_11.2.0-9cross1 libstdc++6_11.2.0-14 libstdc++6-i386-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_250.3-2 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-14 libubsan1_11.2.0-14 libubsan1-i386-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_250.3-2 libunistring2_0.9.10-6 libuuid1_2.37.3-1+b1 libuv1_1.43.0-1 libvulkan1_1.2.198.1-2 libx11-6_2:1.7.2-2+b1 libx11-data_2:1.7.2-2 libx11-xcb1_2:1.7.2-2+b1 libxau6_1:1.0.9-1 libxcb-dri2-0_1.14-3 libxcb-dri3-0_1.14-3 libxcb-glx0_1.14-3 libxcb-present0_1.14-3 libxcb-shm0_1.14-3 libxcb-sync1_1.14-3 libxcb-xfixes0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxfixes3_1:5.0.3-2 libxi6_2:1.8-1 libxml-libxml-perl_2.0207+dfsg-2 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5+b1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxtst6_2:1.2.3-1 libxxf86vm1_1:1.1.4-1+b2 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libz3-4_4.8.12-1+b1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.15-1 linux-libc-dev-i386-cross_5.15.5-1cross1 login_1:4.8.1-2 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-3 mount_2.37.3-1+b1 ncurses-base_6.3-2 ncurses-bin_6.3-2 openjdk-11-jdk_11.0.14+9-1 openjdk-11-jdk-headless_11.0.14+9-1 openjdk-11-jre_11.0.14+9-1 openjdk-11-jre-headless_11.0.14+9-1 openjdk-8-jre-headless_8u312-b07-1 openssl_1.1.1m-1 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 procps_2:3.3.17-6 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.3-1+b1 x11-common_1:7.7+23 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plast Binary: plast, plast-example Architecture: any all Version: 2.3.2+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://plast.inria.fr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/plast Vcs-Git: https://salsa.debian.org/med-team/plast.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev Package-List: plast deb science optional arch=any plast-example deb science optional arch=all Checksums-Sha1: 693e7fd60cb7cd41a9843320e1349a7a23d61671 5726436 plast_2.3.2+dfsg.orig.tar.xz 3431663f0772cc49264c525f9a4f863a718f788a 20984 plast_2.3.2+dfsg-8.debian.tar.xz Checksums-Sha256: db8bcabc66ecc2555d1aeeba68dfc459dd7977251274c1f793e78da092ee9ff1 5726436 plast_2.3.2+dfsg.orig.tar.xz 06143e2c5591d1882bca184d1a19ed0011e773c569fb6a4a09070b49f80527b1 20984 plast_2.3.2+dfsg-8.debian.tar.xz Files: db86adecf11d4eb4e75280a4da50ce13 5726436 plast_2.3.2+dfsg.orig.tar.xz 89cbc3018bd1d4abb7dfa36318538d65 20984 plast_2.3.2+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHu9OQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHDnQ//UTAaVoiBLjghc8I/Wt+MBPNbXotuyMZH CgF+0tL2D5xzifJCKeVLyOzr5xPmItICHYKPV+aTP/9KSOa+jLcYs46A1nZ98Hu0 8ondhURTf04WY2KhGJjRZy7J6/GLdXFe0yQsmOuOTk+0/lxUj3mUMV1JGfC1LVjo dqTVxMjMpbtP1KQrnBL1lguRvWpienTzMwhmzsfM1l/kG6hA0SrLrgzWH4yDMYbH qJrkLDENKHpaqEeLSg3UJw5WZp85pE7D+WbIh8ENByJZt1qdTIdhMvW8d13p43SF E6LIoVEB9RbH1DVn8vgxwNisC/n4jXHBQRv91dO5JJVxfHRFtOeDKgIo/kdil5RB BbmTzygP2fwVBHzl+n+aspZ2Wd9W2hqys+uEoA9eHHohzBrdlJklBz7mnEE+PSIE 5X/3ibI9BmBW3MjNT9bi9ZscJTRN9UqlqOgamfKVAQE2fyzfe3CsSXNYvaBmK9aH XJ755wB1F/SY5NLgORnC/2YE6TvIV+6FuLlbaTAFoZdd4lOiu7jGWG6+hD202bpd a88Z+rWQ/Ta6d0wHW2r+5sSfIPRiTr39V9vFXkCpiyzl4RF3aw6kQPfKxm7EtWZQ E7Tsn6scg55LxXaDCHsldAxlM/xMieFcuu65yFnw6M9bKLRk5ahXv2XPaQKLzYKC UJOd94HvpV4= =mYDO -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.0pW092Pe/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 24 18:50:12 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./plast_2.3.2+dfsg-8.dsc dpkg-source: info: extracting plast in /<> dpkg-source: info: unpacking plast_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking plast_2.3.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying adapt_auto_test_script.sh dpkg-source: info: applying no_msse3.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying pcre.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-2517d2f3-d168-4ffa-b148-3ee30a6719a8 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package plast dpkg-buildpackage: info: source version 2.3.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' set -e ; for SIMD in sse3 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && export CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory=obj-${SIMD} ; \ done cd obj-sse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-sse3 set -e ; for SIMD in sse2 sse ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && export CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory=obj-${SIMD} ; \ done cd obj-sse2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-sse2 cd obj-sse && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-sse dh_auto_configure cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-i686-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' set -e ; for SIMD in sse3 ; do \ dh_auto_build --builddirectory=obj-${SIMD} ; \ done cd obj-sse3 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-sse3' /usr/bin/cmake -S/<> -B/<>/obj-sse3 --check-build-system CMakeFiles/Makefile.cmake 0 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /<>/src/algo/core/impl/AbstractAlgorithm.cpp [ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /<>/src/algo/core/impl/AlgoIndexatorNucleotide.cpp [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /<>/src/algo/core/impl/AlgorithmPlastn.cpp [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /<>/src/algo/core/impl/BasicAlgoIndexator.cpp [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /<>/src/algo/core/impl/DatabasesProvider.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /<>/src/algo/core/impl/DefaultAlgoConfig.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c 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/usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /<>/src/algo/stats/impl/Statistics.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /<>/src/algo/stats/impl/StatisticsPlastn.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include 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/<>/src/alignment/core/impl/AlignmentContainerFactory.cpp [ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/BasicAlignmentContainer.cpp [ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o /usr/bin/i686-linux-gnu-g++ 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CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /<>/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /<>/src/database/impl/AbstractSequenceIterator.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /<>/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 31%] Building CXX object 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /<>/src/index/impl/AbstractDatabaseIndex.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp /<>/src/launcher/observers/AbstractProgressionObserver.cpp: In member function ‘std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)’: /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp /<>/src/launcher/observers/BargraphObserver.cpp: In member function ‘void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)’: /<>/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In destructor ‘virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()’: /<>/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /<>/src/seed/impl/BasicSeedModel.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp /<>/src/seed/impl/SubSeedModel.cpp: In member function ‘void seed::impl::SubSeedModel::dump()’: /<>/src/seed/impl/SubSeedModel.cpp:243:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:243:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:248:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /<>/src/seg/impl/DustMasker.cpp [ 48%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /<>/src/seg/impl/dust.c [ 48%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /<>/src/seg/impl/genwin.c [ 49%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /<>/src/seg/impl/seg.c [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /<>/src/tools/PlastCmd.cpp /<>/src/tools/PlastCmd.cpp: In function ‘int main(int, char**)’: /<>/src/tools/PlastCmd.cpp:120:104: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 8 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 50%] Linking CXX shared library lib/None/libPlastLibrary.so /usr/bin/cmake -E cmake_link_script CMakeFiles/PlastLibrary.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libPlastLibrary.so -o lib/None/libPlastLibrary.so CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o 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-I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /<>/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 57%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT 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CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /<>/src/algo/stats/impl/Statistics.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /<>/src/algo/stats/impl/StatisticsPlastn.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 60%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /<>/src/algo/stats/impl/StatisticsSpouge.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 61%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include 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/<>/src/alignment/core/impl/BasicAlignmentContainer.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -c /<>/src/alignment/core/impl/HspContainer.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 79%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 79%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /<>/src/designpattern/impl/XmlReader.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /<>/src/index/impl/AbstractDatabaseIndex.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 83%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/i686-linux-gnu-gcc -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp /<>/src/launcher/observers/AbstractProgressionObserver.cpp: In member function ‘std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)’: /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp /<>/src/launcher/observers/BargraphObserver.cpp: In member function ‘void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)’: /<>/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In destructor ‘virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()’: /<>/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /<>/src/seed/impl/BasicSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp /<>/src/seed/impl/SubSeedModel.cpp: In member function ‘void seed::impl::SubSeedModel::dump()’: /<>/src/seed/impl/SubSeedModel.cpp:243:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:243:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:248:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 98%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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-I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/plast.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /<>/src/seg/impl/genwin.c [ 99%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o /usr/bin/i686-linux-gnu-gcc -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/seg.c.o -MF CMakeFiles/plast.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /<>/src/seg/impl/seg.c [ 99%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /<>/src/tools/PlastCmd.cpp /<>/src/tools/PlastCmd.cpp: In function ‘int main(int, char**)’: /<>/src/tools/PlastCmd.cpp:120:104: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 8 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d 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'/<>/obj-sse3' [100%] Built target plast make[3]: Leaving directory '/<>/obj-sse3' /usr/bin/cmake -E cmake_progress_start /<>/obj-sse3/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-sse3' set -e ; for SIMD in sse2 sse ; do \ dh_auto_build --builddirectory=obj-${SIMD} ; \ done cd obj-sse2 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-sse2' /usr/bin/cmake -S/<> -B/<>/obj-sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-sse2/CMakeFiles /<>/obj-sse2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-sse2' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/depend make[4]: Entering directory '/<>/obj-sse2' cd /<>/obj-sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-sse2 /<>/obj-sse2 /<>/obj-sse2/CMakeFiles/PlastLibrary.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-sse2' make 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CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /<>/src/algo/stats/impl/Statistics.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /<>/src/algo/stats/impl/StatisticsPlastn.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /<>/src/algo/stats/impl/StatisticsSpouge.cpp [ 10%] Building CXX object 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/usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/CompareContainerVisitor.cpp [ 17%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/SortContainerVisitor.cpp [ 20%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o.d -o 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CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /<>/src/database/impl/AbstractSequenceIterator.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 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CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /<>/src/designpattern/impl/XmlReader.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /<>/src/index/impl/AbstractDatabaseIndex.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 33%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp /<>/src/launcher/observers/AbstractProgressionObserver.cpp: In member function ‘std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)’: /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp /<>/src/launcher/observers/BargraphObserver.cpp: In member function ‘void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)’: /<>/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In destructor ‘virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()’: /<>/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /<>/src/seed/impl/BasicSeedModel.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp /<>/src/seed/impl/SubSeedModel.cpp: In member function ‘void seed::impl::SubSeedModel::dump()’: /<>/src/seed/impl/SubSeedModel.cpp:243:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:243:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:248:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /<>/src/seg/impl/DustMasker.cpp [ 48%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /<>/src/seg/impl/dust.c [ 48%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /<>/src/seg/impl/genwin.c [ 49%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /<>/src/seg/impl/seg.c [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /<>/src/tools/PlastCmd.cpp /<>/src/tools/PlastCmd.cpp: In function ‘int main(int, char**)’: /<>/src/tools/PlastCmd.cpp:120:104: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 8 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 50%] Linking CXX shared library lib/None/libPlastLibrary.so /usr/bin/cmake -E cmake_link_script CMakeFiles/PlastLibrary.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /<>/src/algo/core/impl/AlgorithmPlastn.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o.d -o 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CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /<>/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp [ 68%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -c /<>/src/alignment/visitors/impl/QueryReorderVisitor.cpp [ 69%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -c /<>/src/alignment/visitors/impl/ReverseStrandVisitor.cpp [ 69%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp [ 70%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/SortContainerVisitor.cpp [ 70%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /<>/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp [ 70%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /<>/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /<>/src/database/impl/AbstractSequenceIterator.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /<>/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. 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/usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 80%] Building CXX object 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-I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp /<>/src/launcher/observers/AbstractProgressionObserver.cpp: In member function ‘std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)’: /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp /<>/src/launcher/observers/BargraphObserver.cpp: In member function ‘void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)’: /<>/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In destructor ‘virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()’: /<>/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /<>/src/seed/impl/BasicSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp /<>/src/seed/impl/SubSeedModel.cpp: In member function ‘void seed::impl::SubSeedModel::dump()’: /<>/src/seed/impl/SubSeedModel.cpp:243:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:243:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:248:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 98%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /<>/src/seg/impl/DustMasker.cpp [ 98%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o /usr/bin/i686-linux-gnu-gcc -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/dust.c.o -MF CMakeFiles/plast.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /<>/src/seg/impl/dust.c [ 98%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o /usr/bin/i686-linux-gnu-gcc -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/plast.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /<>/src/seg/impl/genwin.c [ 99%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o /usr/bin/i686-linux-gnu-gcc -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/seg.c.o -MF CMakeFiles/plast.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /<>/src/seg/impl/seg.c [ 99%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /<>/src/tools/PlastCmd.cpp /<>/src/tools/PlastCmd.cpp: In function ‘int main(int, char**)’: /<>/src/tools/PlastCmd.cpp:120:104: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 8 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [100%] Linking CXX executable bin/None/plast /usr/bin/cmake -E cmake_link_script CMakeFiles/plast.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic 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CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /<>/src/algo/stats/impl/StatisticsPlastn.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /<>/src/algo/stats/impl/StatisticsSpouge.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT 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/usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /<>/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp [ 20%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /<>/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /<>/src/database/impl/AbstractSequenceIterator.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /<>/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops 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/<>/src/index/impl/AbstractDatabaseIndex.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 33%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 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CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp /<>/src/launcher/observers/AbstractProgressionObserver.cpp: In member function ‘std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)’: /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp /<>/src/launcher/observers/BargraphObserver.cpp: In member function ‘void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)’: /<>/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In destructor ‘virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()’: /<>/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /<>/src/seed/impl/BasicSeedModel.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp /<>/src/seed/impl/SubSeedModel.cpp: In member function ‘void seed::impl::SubSeedModel::dump()’: /<>/src/seed/impl/SubSeedModel.cpp:243:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:243:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:248:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /<>/src/seg/impl/DustMasker.cpp [ 48%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /<>/src/seg/impl/dust.c [ 48%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /<>/src/seg/impl/genwin.c [ 49%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /<>/src/seg/impl/seg.c [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /<>/src/tools/PlastCmd.cpp /<>/src/tools/PlastCmd.cpp: In function ‘int main(int, char**)’: /<>/src/tools/PlastCmd.cpp:120:104: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 8 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 50%] Linking CXX shared library lib/None/libPlastLibrary.so /usr/bin/cmake -E cmake_link_script CMakeFiles/PlastLibrary.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -fPIC 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/usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /<>/src/algo/stats/impl/Statistics.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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-Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 79%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 79%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 80%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /<>/src/designpattern/impl/XmlReader.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /<>/src/index/impl/AbstractDatabaseIndex.cpp [ 81%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 83%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/i686-linux-gnu-gcc -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp /<>/src/launcher/observers/AbstractProgressionObserver.cpp: In member function ‘std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)’: /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp /<>/src/launcher/observers/BargraphObserver.cpp: In member function ‘void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)’: /<>/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 88%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In destructor ‘virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()’: /<>/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /<>/src/seed/impl/BasicSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp /<>/src/seed/impl/SubSeedModel.cpp: In member function ‘void seed::impl::SubSeedModel::dump()’: /<>/src/seed/impl/SubSeedModel.cpp:243:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:243:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:248:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 98%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd 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-I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/plast.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /<>/src/seg/impl/genwin.c [ 99%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o /usr/bin/i686-linux-gnu-gcc -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/seg.c.o -MF CMakeFiles/plast.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /<>/src/seg/impl/seg.c [ 99%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -D__LINUX__ -I/<>/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /<>/src/tools/PlastCmd.cpp /<>/src/tools/PlastCmd.cpp: In function ‘int main(int, char**)’: /<>/src/tools/PlastCmd.cpp:120:104: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 8 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld 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'/<>/obj-sse' [100%] Built target plast make[3]: Leaving directory '/<>/obj-sse' /usr/bin/cmake -E cmake_progress_start /<>/obj-sse/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-sse' dh_auto_build cd obj-i686-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles /<>/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-i686-linux-gnu' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/depend make[4]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/CMakeFiles/PlastLibrary.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-i686-linux-gnu' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build make[4]: Entering directory '/<>/obj-i686-linux-gnu' [ 0%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /<>/src/algo/core/impl/AbstractAlgorithm.cpp [ 0%] Building CXX object 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/usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp [ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. 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/<>/src/algo/stats/impl/StatisticsPlastn.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(statistics::impl::GlobalParametersPlastn::Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF 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CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/FilterContainerVisitor.cpp [ 17%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ 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/usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/SortContainerVisitor.cpp [ 20%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /<>/src/database/impl/AbstractSequenceIterator.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /<>/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include 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-fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 22%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 25%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp [ 26%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /<>/src/designpattern/impl/XmlReader.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /<>/src/index/impl/AbstractDatabaseIndex.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 33%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp /<>/src/launcher/observers/AbstractProgressionObserver.cpp: In member function ‘std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)’: /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp /<>/src/launcher/observers/BargraphObserver.cpp: In member function ‘void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)’: /<>/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 38%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In destructor ‘virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()’: /<>/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /<>/src/seed/impl/BasicSeedModel.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp /<>/src/seed/impl/SubSeedModel.cpp: In member function ‘void seed::impl::SubSeedModel::dump()’: /<>/src/seed/impl/SubSeedModel.cpp:243:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:243:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:248:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/i686-linux-gnu-g++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /<>/src/seg/impl/DustMasker.cpp [ 48%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/i686-linux-gnu-gcc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr