sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | poa 2.0+20060928-7 (arm64) Fri, 05 Jul 2019 10:33:18 +0000 | +==============================================================================+ Package: poa Version: 2.0+20060928-7 Source Version: 2.0+20060928-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-f09104b4-3892-44b7-b4cb-c4ee790059e5' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-05-0819.43.pdiff [336 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-05-0819.43.pdiff [696 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-05-0819.43.pdiff [336 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-05-0819.43.pdiff [696 B] Get:6 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8126 kB] Fetched 8331 kB in 2s (4358 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'poa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/poa.git Please use: git clone https://salsa.debian.org/med-team/poa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 75.0 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main poa 2.0+20060928-7 (dsc) [1980 B] Get:2 http://debian.oregonstate.edu/debian unstable/main poa 2.0+20060928-7 (tar) [62.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main poa 2.0+20060928-7 (diff) [10.4 kB] Fetched 75.0 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/poa-Juh4Ao/poa-2.0+20060928' with '<>' I: NOTICE: Log filtering will replace 'build/poa-Juh4Ao' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-0oH1tf/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-0oH1tf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0oH1tf/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-0oH1tf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0oH1tf/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-0oH1tf/apt_archive ./ Packages [451 B] Fetched 1770 B in 0s (94.5 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libmpx2-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 161 MB of additional disk space will be used. Get:1 copy:/<>/resolver-0oH1tf/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.31.1-16 [2905 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu-base amd64 8.3.0-7cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-aarch64-linux-gnu amd64 8.3.0-7cross1 [6241 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-10cross2 [1312 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:8.3.0-7cross1 [34.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 8.3.0-7cross1 [66.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 8.3.0-7cross1 [23.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 8.3.0-7cross1 [8624 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 8.3.0-7cross1 [325 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 8.3.0-7cross1 [322 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 8.3.0-7cross1 [117 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 8.3.0-7cross1 [255 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 8.3.0-7cross1 [110 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-arm64-cross all 8.3.0-7cross1 [835 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu amd64 8.3.0-7cross1 [6677 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 4.19.28-2cross2 [1225 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-10cross2 [2323 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-arm64-cross all 8.3.0-7cross1 [1484 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-aarch64-linux-gnu amd64 8.3.0-7cross1 [6813 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 1s (54.3 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11954 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.31.1-16) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-7cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up libc6-arm64-cross (2.28-10cross2) ... Setting up cpp-8-aarch64-linux-gnu (8.3.0-7cross1) ... Setting up libitm1-arm64-cross (8.3.0-7cross1) ... Setting up linux-libc-dev-arm64-cross (4.19.28-2cross2) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (8.3.0-7cross1) ... Setting up libgcc1-arm64-cross (1:8.3.0-7cross1) ... Setting up libgomp1-arm64-cross (8.3.0-7cross1) ... Setting up libc6-dev-arm64-cross (2.28-10cross2) ... Setting up libstdc++6-arm64-cross (8.3.0-7cross1) ... Setting up cpp-aarch64-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up liblsan0-arm64-cross (8.3.0-7cross1) ... Setting up libubsan1-arm64-cross (8.3.0-7cross1) ... Setting up libtsan0-arm64-cross (8.3.0-7cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-arm64-cross (8.3.0-7cross1) ... Setting up libgcc-8-dev-arm64-cross (8.3.0-7cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-8-aarch64-linux-gnu (8.3.0-7cross1) ... Setting up libstdc++-8-dev-arm64-cross (8.3.0-7cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-aarch64-linux-gnu (4:8.3.0-1) ... Setting up g++-8-aarch64-linux-gnu (8.3.0-7cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-0oH1tf/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-0oH1tf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0oH1tf/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-0oH1tf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0oH1tf/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-0oH1tf/apt_archive ./ Packages [571 B] Fetched 2018 B in 0s (110 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-0oH1tf/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 15237 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~) Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~) dpkg-deb: building package 'sbuild-build-depends-poa-dummy' in '/<>/resolver-0oH1tf/apt_archive/sbuild-build-depends-poa-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-poa-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-0oH1tf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0oH1tf/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-0oH1tf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0oH1tf/apt_archive ./ Sources [631 B] Get:5 copy:/<>/resolver-0oH1tf/apt_archive ./ Packages [714 B] Fetched 2308 B in 0s (116 kB/s) Reading package lists... Reading package lists... Install poa build dependencies (apt-based resolver) --------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:arm64 libstdc++6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libstdc++-8-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:arm64 libstdc++6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db po-debconf sbuild-build-depends-poa-dummy:arm64 0 upgraded, 43 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After this operation, 92.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-0oH1tf/apt_archive ./ sbuild-build-depends-poa-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-2 [1259 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-8-base arm64 8.3.0-7 [191 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:8.3.0-7 [34.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-10 [2521 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 8.3.0-7 [363 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 8.3.0-7 [327 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 8.3.0-7 [8804 B] Get:35 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 4.19.37-5 [1165 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-10 [2324 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 8.3.0-7 [67.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 8.3.0-7 [24.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 8.3.0-7 [118 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 8.3.0-7 [262 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 8.3.0-7 [111 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-8-dev arm64 8.3.0-7 [829 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-8-dev arm64 8.3.0-7 [1501 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.4 MB in 0s (54.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15237 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../21-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../22-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package gcc-8-base:arm64. Preparing to unpack .../27-gcc-8-base_8.3.0-7_arm64.deb ... Unpacking gcc-8-base:arm64 (8.3.0-7) ... Selecting previously unselected package libgcc1:arm64. Preparing to unpack .../28-libgcc1_1%3a8.3.0-7_arm64.deb ... Unpacking libgcc1:arm64 (1:8.3.0-7) ... Selecting previously unselected package libc6:arm64. Preparing to unpack .../29-libc6_2.28-10_arm64.deb ... Unpacking libc6:arm64 (2.28-10) ... Selecting previously unselected package libstdc++6:arm64. Preparing to unpack .../30-libstdc++6_8.3.0-7_arm64.deb ... Unpacking libstdc++6:arm64 (8.3.0-7) ... Selecting previously unselected package libasan5:arm64. Preparing to unpack .../31-libasan5_8.3.0-7_arm64.deb ... Unpacking libasan5:arm64 (8.3.0-7) ... Selecting previously unselected package libatomic1:arm64. Preparing to unpack .../32-libatomic1_8.3.0-7_arm64.deb ... Unpacking libatomic1:arm64 (8.3.0-7) ... Selecting previously unselected package linux-libc-dev:arm64. Preparing to unpack .../33-linux-libc-dev_4.19.37-5_arm64.deb ... Unpacking linux-libc-dev:arm64 (4.19.37-5) ... Selecting previously unselected package libc6-dev:arm64. Preparing to unpack .../34-libc6-dev_2.28-10_arm64.deb ... Unpacking libc6-dev:arm64 (2.28-10) ... Selecting previously unselected package libgomp1:arm64. Preparing to unpack .../35-libgomp1_8.3.0-7_arm64.deb ... Unpacking libgomp1:arm64 (8.3.0-7) ... Selecting previously unselected package libitm1:arm64. Preparing to unpack .../36-libitm1_8.3.0-7_arm64.deb ... Unpacking libitm1:arm64 (8.3.0-7) ... Selecting previously unselected package liblsan0:arm64. Preparing to unpack .../37-liblsan0_8.3.0-7_arm64.deb ... Unpacking liblsan0:arm64 (8.3.0-7) ... Selecting previously unselected package libtsan0:arm64. Preparing to unpack .../38-libtsan0_8.3.0-7_arm64.deb ... Unpacking libtsan0:arm64 (8.3.0-7) ... Selecting previously unselected package libubsan1:arm64. Preparing to unpack .../39-libubsan1_8.3.0-7_arm64.deb ... Unpacking libubsan1:arm64 (8.3.0-7) ... Selecting previously unselected package libgcc-8-dev:arm64. Preparing to unpack .../40-libgcc-8-dev_8.3.0-7_arm64.deb ... Unpacking libgcc-8-dev:arm64 (8.3.0-7) ... Selecting previously unselected package libstdc++-8-dev:arm64. Preparing to unpack .../41-libstdc++-8-dev_8.3.0-7_arm64.deb ... Unpacking libstdc++-8-dev:arm64 (8.3.0-7) ... Selecting previously unselected package sbuild-build-depends-poa-dummy:arm64. Preparing to unpack .../42-sbuild-build-depends-poa-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-poa-dummy:arm64 (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2) ... No schema files found: doing nothing. Setting up linux-libc-dev:arm64 (4.19.37-5) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:arm64 (8.3.0-7) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:arm64 (2.28-10) ... Setting up libc6-dev:arm64 (2.28-10) ... Setting up libitm1:arm64 (8.3.0-7) ... Setting up libgcc1:arm64 (1:8.3.0-7) ... Setting up libgomp1:arm64 (8.3.0-7) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:arm64 (8.3.0-7) ... Setting up libstdc++6:arm64 (8.3.0-7) ... Setting up liblsan0:arm64 (8.3.0-7) ... Setting up libtsan0:arm64 (8.3.0-7) ... Setting up debhelper (12.1.1) ... Setting up libasan5:arm64 (8.3.0-7) ... Setting up libubsan1:arm64 (8.3.0-7) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libgcc-8-dev:arm64 (8.3.0-7) ... Setting up libstdc++-8-dev:arm64 (8.3.0-7) ... Setting up sbuild-build-depends-poa-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.7 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-arm64-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-arm64-cross_8.3.0-7cross1 linux-libc-dev_4.19.37-5 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-aarch64-linux-gnu_2.31.1-16 binutils-common_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-aarch64-linux-gnu_8.3.0-7cross1 cpp-aarch64-linux-gnu_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12-3 e2fsprogs_1.45.2-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-aarch64-linux-gnu_8.3.0-7cross1 g++-aarch64-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-aarch64-linux-gnu_8.3.0-7cross1 gcc-8-aarch64-linux-gnu-base_8.3.0-7cross1 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-aarch64-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-2 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_8.3.0-7 libasan5-arm64-cross_8.3.0-7cross1 libatomic1_8.3.0-7 libatomic1-arm64-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.1 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-arm64-cross_2.28-10cross2 libc6-dev_2.28-10 libc6-dev-arm64-cross_2.28-10cross2 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-7 libcom-err2_1.45.2-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.2-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-7 libgcc-8-dev-arm64-cross_8.3.0-7cross1 libgcc1_1:8.3.0-7 libgcc1-arm64-cross_1:8.3.0-7cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4 libgomp1_8.3.0-7 libgomp1-arm64-cross_8.3.0-7cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-7 libitm1-arm64-cross_8.3.0-7cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-7 liblsan0-arm64-cross_8.3.0-7cross1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-7 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_8.3.0-7 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.2-1 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-arm64-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-arm64-cross_8.3.0-7cross1 libsystemd0_241-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libtsan0-arm64-cross_8.3.0-7cross1 libubsan1_8.3.0-7 libubsan1-arm64-cross_8.3.0-7cross1 libuchardet0_0.0.6-3 libudev1_241-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-5 linux-libc-dev-arm64-cross_4.19.28-2cross2 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-4 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-poa-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Sep 27 19:55:06 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./poa_2.0+20060928-7.dsc dpkg-source: info: extracting poa in /<>/poa-2.0+20060928 dpkg-source: info: unpacking poa_2.0+20060928.orig.tar.gz dpkg-source: info: unpacking poa_2.0+20060928-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-f09104b4-3892-44b7-b4cb-c4ee790059e5 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package poa dpkg-buildpackage: info: source version 2.0+20060928-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>/poa-2.0+20060928' rm -f align_score.o main.o black_flag.o seq_util.o fasta_format.o msa_format.o align_lpo2.o align_lpo_po2.o buildup_lpo.o lpo.o heaviest_bundle.o lpo_format.o create_seq.o remove_bundle.o numeric_data.o stringptr.o poa liblpo.a poa_doc libbflag.a make[1]: Leaving directory '/<>/poa-2.0+20060928' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/poa-2.0+20060928' dh_auto_build -- poa make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc poa make[2]: Entering directory '/<>/poa-2.0+20060928' aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align_score.o align_score.c aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.c In file included from lpo.h:6, from main.c:3: main.c: In function 'main': ./default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ main.c:183:3: note: in expansion of macro 'CALLOC' CALLOC (input_seqs, max_input_seqs, LPOSequence_T *); ^~~~~~ ./default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ main.c:221:2: note: in expansion of macro 'REALLOC' REALLOC (input_seqs, max_input_seqs, LPOSequence_T *); ^~~~~~~ In file included from ./default.h:16, from lpo.h:6, from main.c:3: main.c:225:30: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'FILE *' {aka 'struct _IO_FILE *'} [-Wformat=] WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ po_list_file),"$Revision: 1.2.2.9 $"); ~~~~~~~~~~~~ ./black_flag.h:212:10: note: in definition of macro 'WARN_MSG' (sprintf MESSAGE,\ ^~~~~~~ In file included from lpo.h:6, from main.c:3: ./default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ main.c:254:2: note: in expansion of macro 'REALLOC' REALLOC (input_seqs, max_input_seqs, LPOSequence_T *); ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o black_flag.o black_flag.c In file included from black_flag.c:4: black_flag.c: In function 'black_flag_init_args': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ black_flag.c:109:3: note: in expansion of macro 'CALLOC' CALLOC(Program_name,len,char); ^~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seq_util.o seq_util.c In file included from seq_util.c:2: seq_util.c: In function 'read_score_matrix': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ seq_util.c:170:3: note: in expansion of macro 'CALLOC' CALLOC (m->gap_penalty_x, m->max_gap_length+2, LPOScore_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ seq_util.c:171:3: note: in expansion of macro 'CALLOC' CALLOC (m->gap_penalty_y, m->max_gap_length+2, LPOScore_T); ^~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fasta_format.o fasta_format.c fasta_format.c: In function 'read_fasta': fasta_format.c:48:2: warning: implicit declaration of function 'stringptr_cat_pos'; did you mean 'stringptr_cat'? [-Wimplicit-function-declaration] stringptr_cat_pos(&tmp_seq,line,&length); ^~~~~~~~~~~~~~~~~ stringptr_cat aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msa_format.o msa_format.c In file included from msa_format.h:17, from msa_format.c:17: msa_format.c: In function 'read_clustal': default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:169:7: note: in expansion of macro 'REALLOC' REALLOC (seq_names, n_seqs, char *); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:171:7: note: in expansion of macro 'REALLOC' REALLOC (seq_titles, n_seqs, char *); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:174:7: note: in expansion of macro 'REALLOC' REALLOC (aln_mat, n_seqs, char *); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:176:7: note: in expansion of macro 'REALLOC' REALLOC (aln_lengths, n_seqs, int); ^~~~~~~ default.h:184:22: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ ~~~~~ default.h:184:22: note: in definition of macro 'REALLOC' fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ msa_format.c:185:5: note: in expansion of macro 'REALLOC' REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:185:5: note: in expansion of macro 'REALLOC' REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); ^~~~~~~ msa_format.c: In function 'read_pir': default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:248:7: note: in expansion of macro 'REALLOC' REALLOC (seq_names, n_seqs, char *); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:250:7: note: in expansion of macro 'REALLOC' REALLOC (seq_titles, n_seqs, char *); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:252:7: note: in expansion of macro 'REALLOC' REALLOC (aln_mat, n_seqs, char *); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:254:7: note: in expansion of macro 'REALLOC' REALLOC (aln_lengths, n_seqs, int); ^~~~~~~ default.h:184:22: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ ~~~~~ default.h:184:22: note: in definition of macro 'REALLOC' fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ msa_format.c:268:7: note: in expansion of macro 'REALLOC' REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:268:7: note: in expansion of macro 'REALLOC' REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); ^~~~~~~ msa_format.c: In function 'lpo_from_aln_mat': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:318:3: note: in expansion of macro 'CALLOC' CALLOC (column_ids, n_seqs+1, int *); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:319:3: note: in expansion of macro 'CALLOC' CALLOC (res_ids, n_seqs+1, int *); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:326:5: note: in expansion of macro 'CALLOC' CALLOC (column_ids[i], max_aln_length, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:327:5: note: in expansion of macro 'CALLOC' CALLOC (res_ids[i], max_aln_length, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:334:3: note: in expansion of macro 'CALLOC' CALLOC (consens_row, max_aln_length, char); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:347:3: note: in expansion of macro 'CALLOC' CALLOC (lposeq, 1, LPOSequence_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:351:3: note: in expansion of macro 'CALLOC' CALLOC (lposeq->sequence, max_aln_length+1, char); ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:369:3: note: in expansion of macro 'REALLOC' REALLOC (lposeq->sequence, len+1, char); ^~~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:375:5: note: in expansion of macro 'CALLOC' CALLOC (curr_seq, 1, LPOSequence_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:380:5: note: in expansion of macro 'CALLOC' CALLOC (curr_seq->sequence, aln_lengths[i]+1, char); ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:398:5: note: in expansion of macro 'REALLOC' REALLOC (curr_seq->sequence, len+1, char); ^~~~~~~ msa_format.c:404:5: warning: implicit declaration of function 'build_seq_to_po_index' [-Wimplicit-function-declaration] build_seq_to_po_index (lposeq); ^~~~~~~~~~~~~~~~~~~~~ In file included from msa_format.h:17, from msa_format.c:17: default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:406:5: note: in expansion of macro 'CALLOC' CALLOC (al_x, len, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:407:5: note: in expansion of macro 'CALLOC' CALLOC (al_y, lposeq->length, int); ^~~~~~ msa_format.c:428:5: warning: implicit declaration of function 'fuse_ring_identities' [-Wimplicit-function-declaration] fuse_ring_identities (lposeq->length, lposeq->letter, ^~~~~~~~~~~~~~~~~~~~ In file included from msa_format.h:17, from msa_format.c:17: msa_format.c: In function 'filter_sequence_set': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ msa_format.c:485:3: note: in expansion of macro 'CALLOC' CALLOC (keep_seq, n_seqs, int); ^~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align_lpo2.o align_lpo2.c In file included from align_lpo2.c:2: align_lpo2.c: In function 'get_seq_left_and_final': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:60:3: note: in expansion of macro 'CALLOC' CALLOC (is_final_node_x, len_x, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:66:3: note: in expansion of macro 'CALLOC' CALLOC (x_left, len_x, LPOLetterLink_T *); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:70:7: note: in expansion of macro 'CALLOC' CALLOC (x_left[i], 1, LPOLetterLink_T); ^~~~~~ align_lpo2.c: In function 'trace_back_lpo_alignment': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:96:3: note: in expansion of macro 'CALLOC' CALLOC (x_al, len_x, LPOLetterRef_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:97:3: note: in expansion of macro 'CALLOC' CALLOC (y_al, len_y, LPOLetterRef_T); ^~~~~~ align_lpo2.c: In function 'align_lpo': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:185:3: note: in expansion of macro 'CALLOC' CALLOC (next_gap_array, max_gap_length + 2, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:186:3: note: in expansion of macro 'CALLOC' CALLOC (next_perp_gap_array, max_gap_length + 2, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:199:3: note: in expansion of macro 'CALLOC' CALLOC (move, len_y, DPMove_T *); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:201:5: note: in expansion of macro 'CALLOC' CALLOC (move[i], len_x, DPMove_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:204:3: note: in expansion of macro 'CALLOC' CALLOC (init_col_score, len_y+1, DPScore_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:207:3: note: in expansion of macro 'CALLOC' CALLOC (curr_score, len_x+1, DPScore_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo2.c:209:3: note: in expansion of macro 'CALLOC' CALLOC (prev_score, len_x+1, DPScore_T); ^~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align_lpo_po2.o align_lpo_po2.c In file included from align_lpo_po2.c:2: align_lpo_po2.c: In function 'get_lpo_stats': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:41:3: note: in expansion of macro 'CALLOC' CALLOC (node_type, len, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:42:3: note: in expansion of macro 'CALLOC' CALLOC (refs_from_right, len, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:43:3: note: in expansion of macro 'CALLOC' CALLOC (tmp, len, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:44:3: note: in expansion of macro 'CALLOC' CALLOC (left_links, len, LPOLetterLink_T *); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:71:7: note: in expansion of macro 'CALLOC' CALLOC (left_links[i], 1, LPOLetterLink_T); ^~~~~~ align_lpo_po2.c: In function 'trace_back_lpo_alignment': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:120:3: note: in expansion of macro 'CALLOC' CALLOC (x_al, len_x, LPOLetterRef_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:121:3: note: in expansion of macro 'CALLOC' CALLOC (y_al, len_y, LPOLetterRef_T); ^~~~~~ align_lpo_po2.c: In function 'align_lpo_po': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:227:3: note: in expansion of macro 'CALLOC' CALLOC (next_gap_array, max_gap_length + 2, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:228:3: note: in expansion of macro 'CALLOC' CALLOC (next_perp_gap_array, max_gap_length + 2, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:254:3: note: in expansion of macro 'CALLOC' CALLOC (move, len_y, DPMove_T *); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:256:5: note: in expansion of macro 'CALLOC' CALLOC (move[i], len_x, DPMove_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:259:3: note: in expansion of macro 'CALLOC' CALLOC (init_col_score, len_y+1, DPScore_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:262:3: note: in expansion of macro 'CALLOC' CALLOC (score_rows, len_y+1, DPScore_T *); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:264:3: note: in expansion of macro 'CALLOC' CALLOC (score_rows[-1], len_x+1, DPScore_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ align_lpo_po2.c:312:5: note: in expansion of macro 'CALLOC' CALLOC (score_rows[i], len_x+1, DPScore_T); ^~~~~~ align_lpo_po2.c:438:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y); ~~^ ~~~~~~~~~ %d align_lpo_po2.c:438:69: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int' [-Wformat=] fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y); ~~^ ~~~~~~~~~ %d aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o buildup_lpo.o buildup_lpo.c In file included from buildup_lpo.c:3: buildup_lpo.c: In function 'clip_unaligned_ends': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:146:3: note: in expansion of macro 'CALLOC' CALLOC(temp,seq->length,LPOLetter_T); /* ALLOCATE NEW letter[] COPY */ ^~~~~~ buildup_lpo.c: In function 'read_seqpair_scorefile': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:327:3: note: in expansion of macro 'CALLOC' CALLOC (adj_score, nseq, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:330:3: note: in expansion of macro 'CALLOC' CALLOC (score_list, max_nscore, SeqPairScore_T); ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:353:2: note: in expansion of macro 'REALLOC' REALLOC (score_list, max_nscore, SeqPairScore_T); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:374:2: note: in expansion of macro 'REALLOC' REALLOC (score_list, max_nscore, SeqPairScore_T); ^~~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:394:2: note: in expansion of macro 'REALLOC' REALLOC (score_list, max_nscore, SeqPairScore_T); ^~~~~~~ buildup_lpo.c: In function 'buildup_progressive_lpo': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:445:3: note: in expansion of macro 'CALLOC' CALLOC(seq_cluster,nseq,int); /* MAPS SEQS (or CLUSTERS) TO CLUSTER THEY'RE IN */ ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:446:3: note: in expansion of macro 'CALLOC' CALLOC(seq_id_in_cluster,nseq,int); /* INDEXES SEQS (or CLUSTERS) WITHIN EACH CLUSTER */ ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:447:3: note: in expansion of macro 'CALLOC' CALLOC(cluster_size,nseq,int); /* COUNTS SEQS IN SAME CLUSTER (updated w/ merges) */ ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:448:3: note: in expansion of macro 'CALLOC' CALLOC(initial_nseq,nseq,int); /* COUNTS SEQS INITIALLY IN EACH CLUSTER (not updated w/ merges) */ ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ buildup_lpo.c:538:5: note: in expansion of macro 'CALLOC' CALLOC (perm, nseq_tot, int); ^~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lpo.o lpo.c In file included from lpo.c:3: lpo.c: In function 'lpo_init': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:15:3: note: in expansion of macro 'CALLOC' CALLOC(seq->letter,seq->length,LPOLetter_T); ^~~~~~ lpo.c: In function 'build_seq_to_po_index': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:157:5: note: in expansion of macro 'CALLOC' CALLOC(seq->source_seq[i].seq_to_po,seq->source_seq[i].length,int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:158:5: note: in expansion of macro 'CALLOC' CALLOC(seq->source_seq[i].po_to_seq,seq->length,int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:159:5: note: in expansion of macro 'CALLOC' CALLOC(seq->source_seq[i].sequence,seq->source_seq[i].length+1,char); ^~~~~~ lpo.c: In function 'save_lpo_source': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:212:5: note: in expansion of macro 'CALLOC' CALLOC(memptr,BUF,ATYPE) } \ ^~~~~~ lpo.c:189:3: note: in expansion of macro 'REBUFF' REBUFF(seq->source_seq,seq->nsource_seq,SOURCE_SEQ_BUFFER_CHUNK, ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:215:5: note: in expansion of macro 'REALLOC' REALLOC(memptr,(NUM)+(BUF),ATYPE); \ ^~~~~~~ lpo.c:189:3: note: in expansion of macro 'REBUFF' REBUFF(seq->source_seq,seq->nsource_seq,SOURCE_SEQ_BUFFER_CHUNK, ^~~~~~ lpo.c: In function 'save_lpo_source_list': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:213:3: note: in expansion of macro 'CALLOC' CALLOC(list,nsource_seq,int); ^~~~~~ lpo.c: In function 'add_lpo_link': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:238:3: note: in expansion of macro 'CALLOC' CALLOC(list->more,1,LPOLetterLink_T); /* ADD ENTRY TO LINKED LIST */ ^~~~~~ lpo.c: In function 'add_lpo_sources': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:252:7: note: in expansion of macro 'CALLOC' CALLOC(new_s->more,1,LPOLetterSource_T); ^~~~~~ lpo.c: In function 'reindex_lpo_source_seqs': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:270:3: note: in expansion of macro 'CALLOC' CALLOC (map, len, int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:271:3: note: in expansion of macro 'CALLOC' CALLOC (invmap, len, int); ^~~~~~ lpo.c: In function 'reindex_lpo_fusion': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:427:3: note: in expansion of macro 'CALLOC' CALLOC(do_fuse,len_y,char); /* MARK POSITIONS TO FUSE seq_y TO seq_x */ ^~~~~~ lpo.c: In function 'copy_fuse_lpo_remap': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:500:3: note: in expansion of macro 'CALLOC' CALLOC(new_seq,1,LPOSequence_T); /* CREATE A NEW HOLDER */ ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:501:3: note: in expansion of macro 'CALLOC' CALLOC(new_x,len_x,LPOLetterRef_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:502:3: note: in expansion of macro 'CALLOC' CALLOC(new_y,len_y,LPOLetterRef_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:505:3: note: in expansion of macro 'CALLOC' CALLOC(new_lpo,new_len,LPOLetter_T); /* ALLOCATE NEW LINEARIZED PO */ ^~~~~~ lpo.c: In function 'copy_lpo': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:564:3: note: in expansion of macro 'CALLOC' CALLOC(x_to_y,holder_x->length,LPOLetterRef_T); ^~~~~~ lpo.c: In function 'fuse_lpo_remap': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:618:3: note: in expansion of macro 'CALLOC' CALLOC(new_x,len_x,LPOLetterRef_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:619:3: note: in expansion of macro 'CALLOC' CALLOC(new_y,len_y,LPOLetterRef_T); ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo.c:622:3: note: in expansion of macro 'REALLOC' REALLOC(seq_x,new_len,LPOLetter_T); /* EXPAND seq_x TO HOLD FUSED LPO */ ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o heaviest_bundle.o heaviest_bundle.c In file included from heaviest_bundle.c:3: heaviest_bundle.c: In function 'heaviest_bundle': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ heaviest_bundle.c:27:3: note: in expansion of macro 'CALLOC' CALLOC(path,len,LPOLetterRef_T); /* GET MEMORY FOR DYNAMIC PROGRAMMING */ ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ heaviest_bundle.c:28:3: note: in expansion of macro 'CALLOC' CALLOC(score,len,LPOScore_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ heaviest_bundle.c:29:3: note: in expansion of macro 'CALLOC' CALLOC(contains_pos,nsource_seq,int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ heaviest_bundle.c:67:3: note: in expansion of macro 'CALLOC' CALLOC(best_path,len,LPOLetterRef_T); /* MEMORY FOR STORING BEST PATH */ ^~~~~~ heaviest_bundle.c: In function 'assign_sequence_bundle_id': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ heaviest_bundle.c:90:3: note: in expansion of macro 'CALLOC' CALLOC(bundle_count,seq->nsource_seq,int); ^~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lpo_format.o lpo_format.c In file included from lpo_format.c:3: lpo_format.c: In function 'read_lpo': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:60:3: note: in expansion of macro 'CALLOC' CALLOC(seq,1,LPOSequence_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:71:3: note: in expansion of macro 'CALLOC' CALLOC(seq->letter,length,LPOLetter_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:241:5: note: in expansion of macro 'CALLOC' CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~ lpo_format.c:72:3: note: in expansion of macro 'GETMEM' GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:245:5: note: in expansion of macro 'REALLOC' REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~~ lpo_format.c:72:3: note: in expansion of macro 'GETMEM' GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:73:3: note: in expansion of macro 'CALLOC' CALLOC(pos_count,nsource_seq,int); ^~~~~~ lpo_format.c: In function 'read_lpo_select': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:159:3: note: in expansion of macro 'CALLOC' CALLOC(seq,1,LPOSequence_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:170:3: note: in expansion of macro 'CALLOC' CALLOC(seq->letter,length,LPOLetter_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:241:5: note: in expansion of macro 'CALLOC' CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~ lpo_format.c:171:3: note: in expansion of macro 'GETMEM' GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:245:5: note: in expansion of macro 'REALLOC' REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~~ lpo_format.c:171:3: note: in expansion of macro 'GETMEM' GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:172:3: note: in expansion of macro 'CALLOC' CALLOC(pos_count,nsource_seq,int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:196:3: note: in expansion of macro 'CALLOC' CALLOC(iseq_compact,nsource_seq,int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:197:3: note: in expansion of macro 'CALLOC' CALLOC(last_pos,nsource_seq,int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:198:3: note: in expansion of macro 'CALLOC' CALLOC(match_pos,nsource_seq,int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:229:3: note: in expansion of macro 'CALLOC' CALLOC(link_list,seq->length,int); /*TEMPORARY DATA FOR COMPACTION MAPPING */ ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:230:3: note: in expansion of macro 'CALLOC' CALLOC(pos_compact,seq->length,int); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:231:3: note: in expansion of macro 'CALLOC' CALLOC(ring_old,seq->length,int); ^~~~~~ lpo_format.c: In function 'xlate_lpo_to_al': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:353:3: note: in expansion of macro 'CALLOC' CALLOC(seq_pos,seq->nsource_seq,char *); /* ALLOCATE MAP ARRAY*/ ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:354:3: note: in expansion of macro 'CALLOC' CALLOC(p,seq->nsource_seq*nring,char); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ lpo_format.c:374:5: note: in expansion of macro 'CALLOC' CALLOC(include_in_save,nring,char); /* BLANK FLAGS: WHAT RINGS TO SHOW*/ ^~~~~~ lpo_format.c: In function 'read_lpo': lpo_format.c:61:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifile,"VERSION=%s",version); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:62:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifile," NAME=%[^\n]",name); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:63:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifile," TITLE=%[^\n]",title); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:86:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifile,"%*[ \t]"); ^~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c: In function 'read_lpo_select': lpo_format.c:160:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifile,"VERSION=%s",version); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:161:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifile," NAME=%[^\n]",name); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:162:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifile," TITLE=%[^\n]",title); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:185:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifile,"%*[ \t]"); ^~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o create_seq.o create_seq.c In file included from create_seq.c:3: create_seq.c: In function 'create_seq': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:212:5: note: in expansion of macro 'CALLOC' CALLOC(memptr,BUF,ATYPE) } \ ^~~~~~ create_seq.c:29:3: note: in expansion of macro 'REBUFF' REBUFF(*p_seq,nseq,SEQUENCE_BUFFER_CHUNK,Sequence_T); /* ALLOCATE MEMORY*/ ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:215:5: note: in expansion of macro 'REALLOC' REALLOC(memptr,(NUM)+(BUF),ATYPE); \ ^~~~~~~ create_seq.c:29:3: note: in expansion of macro 'REBUFF' REBUFF(*p_seq,nseq,SEQUENCE_BUFFER_CHUNK,Sequence_T); /* ALLOCATE MEMORY*/ ^~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o remove_bundle.o remove_bundle.c In file included from remove_bundle.c:4: remove_bundle.c: In function 'compact_links': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ remove_bundle.c:16:3: note: in expansion of macro 'CALLOC' CALLOC(link,1,LPOLetterLink_T); ^~~~~~ remove_bundle.c: In function 'compact_sources': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ remove_bundle.c:59:3: note: in expansion of macro 'CALLOC' CALLOC(source,1,LPOLetterSource_T); ^~~~~~ remove_bundle.c: In function 'remove_bundle': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ remove_bundle.c:128:3: note: in expansion of macro 'CALLOC' CALLOC(old_to_new,seq->length,int); /* CREATE MAPPING ARRAY */ ^~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o numeric_data.o numeric_data.c In file included from ./lpo.h:6, from numeric_data.c:3: numeric_data.c: In function 'new_numeric_data': ./default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ ./default.h:212:5: note: in expansion of macro 'CALLOC' CALLOC(memptr,BUF,ATYPE) } \ ^~~~~~ numeric_data.c:18:3: note: in expansion of macro 'REBUFF' REBUFF(source_seq->data,source_seq->ndata,NUMDATA_BUFFER_CHUNK,LPONumericData_T); ^~~~~~ ./default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ ./default.h:215:5: note: in expansion of macro 'REALLOC' REALLOC(memptr,(NUM)+(BUF),ATYPE); \ ^~~~~~~ numeric_data.c:18:3: note: in expansion of macro 'REBUFF' REBUFF(source_seq->data,source_seq->ndata,NUMDATA_BUFFER_CHUNK,LPONumericData_T); ^~~~~~ ./default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ numeric_data.c:25:3: note: in expansion of macro 'CALLOC' CALLOC(data->data,source_seq->length,double); /* ALLOCATE THE ARRAY */ ^~~~~~ numeric_data.c: In function 'read_numeric_data': numeric_data.c:139:4: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifile," %lf",data->data+j); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stringptr.o stringptr.c In file included from stringptr.c:2: stringptr.c: In function 'stringptr_cat_pos': default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ stringptr.c:30:3: note: in expansion of macro 'CALLOC' CALLOC(s2_temp,s2_len,char); /* ALLOCATE TEMP STORAGE */ ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:241:5: note: in expansion of macro 'CALLOC' CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~ stringptr.c:40:3: note: in expansion of macro 'GETMEM' GETMEM(s1->p,total_len, ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:245:5: note: in expansion of macro 'REALLOC' REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~~ stringptr.c:40:3: note: in expansion of macro 'GETMEM' GETMEM(s1->p,total_len, ^~~~~~ stringptr.c: In function 'stringptr_cpy': default.h:147:22: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __FILE__,__LINE__,STRINGIFY(memptr),(N)); \ ~~~ default.h:147:22: note: in definition of macro 'CALLOC' fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stringptr.c:67:3: note: in expansion of macro 'GETMEM' GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); ^~~~~~ default.h:154:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ default.h:154:20: note: in definition of macro 'CALLOC' fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stringptr.c:67:3: note: in expansion of macro 'GETMEM' GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ default.h:241:5: note: in expansion of macro 'CALLOC' CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~ stringptr.c:67:3: note: in expansion of macro 'GETMEM' GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); ^~~~~~ default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:241:5: note: in expansion of macro 'CALLOC' CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~ stringptr.c:67:3: note: in expansion of macro 'GETMEM' GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); ^~~~~~ default.h:184:22: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ ~~~~~ default.h:184:22: note: in definition of macro 'REALLOC' fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stringptr.c:67:3: note: in expansion of macro 'GETMEM' GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ default.h:245:5: note: in expansion of macro 'REALLOC' REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~~ stringptr.c:67:3: note: in expansion of macro 'GETMEM' GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); ^~~~~~ default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=] fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ default.h:245:5: note: in expansion of macro 'REALLOC' REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ ^~~~~~~ stringptr.c:67:3: note: in expansion of macro 'GETMEM' GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); ^~~~~~ rm -f liblpo.a ar rc liblpo.a black_flag.o seq_util.o fasta_format.o msa_format.o align_lpo2.o align_lpo_po2.o buildup_lpo.o lpo.o heaviest_bundle.o lpo_format.o create_seq.o remove_bundle.o numeric_data.o stringptr.o ranlib liblpo.a aarch64-linux-gnu-gcc -o poa align_score.o main.o -lm liblpo.a -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/poa-2.0+20060928' make[1]: Leaving directory '/<>/poa-2.0+20060928' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/poa/usr/bin/poa was not linked against libm.so.6 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package poa: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package poa: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'poa' in '../poa_2.0+20060928-7_arm64.deb'. dpkg-deb: building package 'poa-dbgsym' in '../poa-dbgsym_2.0+20060928-7_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../poa_2.0+20060928-7_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-07-05T10:34:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-0oH1tf/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-poa-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-0oH1tf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0oH1tf/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-0oH1tf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0oH1tf/apt_archive ./ Sources [751 B] Get:5 copy:/<>/resolver-0oH1tf/apt_archive ./ Packages [826 B] Fetched 2540 B in 0s (132 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 7774 kB of archives. After this operation, 20.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-0oH1tf/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-2 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-3 [641 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-2 [866 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.15.0 [1181 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7774 kB in 0s (43.5 MB/s) Selecting previously unselected package netbase. (Reading database ... 17956 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.13-2_amd64.deb ... Unpacking gpgconf (2.2.13-2) ... Selecting previously unselected package libsqlite3-0:amd64. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ poa_2.0+20060928-7_arm64.changes: --------------------------------- Format: 1.8 Date: Thu, 27 Sep 2018 21:51:23 +0200 Source: poa Binary: poa poa-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.0+20060928-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: poa - Partial Order Alignment for multiple sequence alignment Changes: poa (2.0+20060928-7) unstable; urgency=medium . [ Steffen Moeller ] * Added ref to OMICtools entry . 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+------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: poa Binary: poa Architecture: arm64 Version: 2.0+20060928-7 Checksums-Md5: d438ceed05ae91008040589cee56abf7 107832 poa-dbgsym_2.0+20060928-7_arm64.deb 56ebaa02f54a712604ae234404ba8574 49916 poa_2.0+20060928-7_arm64.deb Checksums-Sha1: 84712005a28c386cc342e2a7207db83500c5c366 107832 poa-dbgsym_2.0+20060928-7_arm64.deb a0fd330cfe407eb3fcdafbf5eb0c6c3a0bf8eefd 49916 poa_2.0+20060928-7_arm64.deb Checksums-Sha256: 1c4dc8a15ca73dad9b637b3eea90a97f31bfa0ee03c3e2b65a651aa4f60fd5e5 107832 poa-dbgsym_2.0+20060928-7_arm64.deb 7078e191837e9d180f4925a23f4496158c391b7ad5306a555a0e3a073ad445e4 49916 poa_2.0+20060928-7_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 05 Jul 2019 10:34:06 +0000 Build-Path: /<>/poa-2.0+20060928 Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.3), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.1), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-7), dash (= 0.5.10.2-5), debconf (= 1.5.72), debhelper (= 12.1.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-7), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-7), gcc-8-base (= 8.3.0-7), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-7), libatomic1 (= 8.3.0-7), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-3), libaudit1 (= 1:2.8.4-3), libbinutils (= 2.31.1-16), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9.1), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-7), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-7), libgcc1 (= 1:8.3.0-7), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libglib2.0-0 (= 2.58.3-2), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 8.3.0-7), libgpg-error0 (= 1.35-1), libicu63 (= 63.2-2), libisl19 (= 0.20-2), libitm1 (= 8.3.0-7), liblsan0 (= 8.3.0-7), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-7), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 8.3.0-7), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libstdc++-8-dev (= 8.3.0-7), libstdc++6 (= 8.3.0-7), libsystemd0 (= 241-5), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-7), libubsan1 (= 8.3.0-7), libuchardet0 (= 0.0.6-3), libudev1 (= 241-5), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 4.19.37-5), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), patch (= 2.7.6-4), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-6), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1538077883" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ poa-dbgsym_2.0+20060928-7_arm64.deb ----------------------------------- new Debian package, version 2.0. size 107832 bytes: control archive=532 bytes. 368 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: poa-dbgsym Source: poa Version: 2.0+20060928-7 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 125 Depends: poa (= 2.0+20060928-7) Section: debug Priority: optional Description: debug symbols for poa Build-Ids: 104865a6d18e70af1935e4231428ff4291963459 drwxr-xr-x root/root 0 2018-09-27 19:51 ./ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/lib/ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/lib/debug/.build-id/10/ -rw-r--r-- root/root 117584 2018-09-27 19:51 ./usr/lib/debug/.build-id/10/4865a6d18e70af1935e4231428ff4291963459.debug drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-09-27 19:51 ./usr/share/doc/poa-dbgsym -> poa poa_2.0+20060928-7_arm64.deb ---------------------------- new Debian package, version 2.0. size 49916 bytes: control archive=1404 bytes. 933 bytes, 21 lines control 1337 bytes, 20 lines md5sums Package: poa Version: 2.0+20060928-7 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 131 Depends: libc6 (>= 2.17) Suggests: blast2 Enhances: t-coffee Section: science Priority: optional Homepage: http://poamsa.sourceforge.net/ Description: Partial Order Alignment for multiple sequence alignment POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW. drwxr-xr-x root/root 0 2018-09-27 19:51 ./ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/bin/ -rwxr-xr-x root/root 79864 2018-09-27 19:51 ./usr/bin/poa drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/poa/ -rw-r--r-- root/root 365 2018-09-27 19:51 ./usr/share/doc/poa/NEWS.Debian.gz -rw-r--r-- root/root 574 2018-09-27 19:51 ./usr/share/doc/poa/README.Debian -rw-r--r-- root/root 4989 2004-03-22 20:01 ./usr/share/doc/poa/README.gz -rw-r--r-- root/root 261 2018-09-27 19:51 ./usr/share/doc/poa/README.test -rw-r--r-- root/root 1448 2018-09-27 19:51 ./usr/share/doc/poa/changelog.Debian.gz -rw-r--r-- root/root 1286 2018-09-27 19:51 ./usr/share/doc/poa/copyright drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/poa/examples/ -rw-r--r-- root/root 2747 2004-03-12 05:28 ./usr/share/doc/poa/examples/multidom.seq -rw-r--r-- root/root 586 2018-09-27 19:51 ./usr/share/doc/poa/run-unit-test drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/poa/test_data/ -rw-r--r-- root/root 2061 2018-09-27 19:51 ./usr/share/doc/poa/test_data/blosum80.mat -rw-r--r-- root/root 3099 2018-09-27 19:51 ./usr/share/doc/poa/test_data/clustal.out -rw-r--r-- root/root 39 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test1.fa -rw-r--r-- root/root 243 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test2.fa -rw-r--r-- root/root 134 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test3.fa -rw-r--r-- root/root 1089 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test4.fa -rw-r--r-- root/root 56 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test5.fa drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/man/ drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/man/man1/ -rw-r--r-- root/root 1969 2018-09-27 19:51 ./usr/share/man/man1/poa.1.gz drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/poa/ -rw-r--r-- root/root 3321 2004-03-12 08:10 ./usr/share/poa/blosum80.mat -rw-r--r-- root/root 3365 2004-03-12 06:08 ./usr/share/poa/blosum80_trunc.mat -rwxr-xr-x root/root 1284 2004-03-22 19:56 ./usr/share/poa/make_pscores.pl +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3052 Build-Time: 13 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 26 Job: poa_2.0+20060928-7 Lintian: pass Machine Architecture: amd64 Package: poa Package-Time: 48 Source-Version: 2.0+20060928-7 Space: 3052 Status: successful Version: 2.0+20060928-7 -------------------------------------------------------------------------------- Finished at 2019-07-05T10:34:06Z Build needed 00:00:48, 3052k disk space