sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org
+==============================================================================+
| poa 2.0+20060928-7 (s390x) Thu, 21 Mar 2019 18:21:16 +0000 |
+==============================================================================+
Package: poa
Version: 2.0+20060928-7
Source Version: 2.0+20060928-7
Distribution: unstable
Machine Architecture: amd64
Host Architecture: s390x
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-c1794803-7bf3-499d-95a3-77379716f543' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://debian.oregonstate.edu/debian unstable InRelease [242 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-21-0210.00.pdiff [12.3 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-21-1409.56.pdiff [4068 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-21-1409.56.pdiff [4068 B]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-21-0210.00.pdiff [4371 B]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-21-1409.56.pdiff [16.2 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7975 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-21-1409.56.pdiff [16.2 kB]
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Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'poa' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/poa.git
Please use:
git clone https://salsa.debian.org/med-team/poa.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 75.0 kB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main poa 2.0+20060928-7 (dsc) [1980 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main poa 2.0+20060928-7 (tar) [62.6 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main poa 2.0+20060928-7 (diff) [10.4 kB]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/poa-XeIOGz/poa-2.0+20060928' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/poa-XeIOGz' with '<<BUILDDIR>>'
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| Install crossbuild-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64
Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-MbVOeX/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Release [957 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Sources [361 B]
Get:5 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Packages [450 B]
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Reading package lists...
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu
cross-config crossbuild-essential-s390x dpkg-cross file
g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base
gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu
libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross
libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl
libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl
libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63
libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc
libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross
libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl
libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
linux-libc-dev-s390x-cross sensible-utils ucf
Suggested packages:
binutils-doc gcc-8-locales cpp-doc binutils-multiarch
g++-8-multilib-s390x-linux-gnu gcc-8-doc libstdc++6-8-dbg-s390x-cross
gcc-8-multilib-s390x-linux-gnu libgcc1-dbg-s390x-cross
libgomp1-dbg-s390x-cross libitm1-dbg-s390x-cross libatomic1-dbg-s390x-cross
libasan5-dbg-s390x-cross liblsan0-dbg-s390x-cross libtsan0-dbg-s390x-cross
libubsan1-dbg-s390x-cross libmpx2-dbg-s390x-cross
libquadmath0-dbg-s390x-cross manpages-dev autoconf automake libtool flex
bison gdb-s390x-linux-gnu gcc-doc libyaml-shell-perl
Recommended packages:
libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl
The following NEW packages will be installed:
binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu
cross-config crossbuild-essential-s390x dpkg-cross file
g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base
gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu
libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross
libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl
libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl
libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63
libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc
libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross
libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl
libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
linux-libc-dev-s390x-cross sbuild-build-depends-core-dummy:s390x
sensible-utils ucf
0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded.
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Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB]
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Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.31.1-15 [2128 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu-base amd64 8.3.0-2cross1 [190 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-s390x-linux-gnu amd64 8.3.0-2cross1 [5937 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:8.3.0-1 [16.5 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-2cross1 [185 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.28-7cross1 [1308 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:8.3.0-2cross1 [24.8 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 8.3.0-2cross1 [67.4 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 8.3.0-2cross1 [26.3 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 8.3.0-2cross1 [8088 B]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 8.3.0-2cross1 [353 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 8.3.0-2cross1 [314 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 8.3.0-2cross1 [113 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-s390x-cross all 8.3.0-2cross1 [641 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu amd64 8.3.0-2cross1 [6368 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:8.3.0-1 [1456 B]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 4.19.20-1cross1 [1227 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.28-7cross1 [2255 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-s390x-cross all 8.3.0-2cross1 [1483 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-s390x-linux-gnu amd64 8.3.0-2cross1 [6515 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:8.3.0-1 [1176 B]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.6 [6568 B]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libmagic1:amd64 (1:5.35-4) ...
Setting up libxml-namespacesupport-perl (1.12-1) ...
Setting up file (1:5.35-4) ...
Setting up libyaml-perl (1.27-1) ...
Setting up libicu63:amd64 (63.1-6) ...
Setting up libxml-sax-base-perl (1.09-1) ...
Setting up libio-string-perl (1.08-3) ...
Setting up linux-libc-dev-s390x-cross (4.19.20-1cross1) ...
Setting up cross-config (2.6.15-2) ...
Setting up cpp-8-s390x-linux-gnu (8.3.0-2cross1) ...
Setting up libitm1-s390x-cross (8.3.0-2cross1) ...
Setting up sensible-utils (0.0.12) ...
Setting up libc6-dev-s390x-cross (2.28-7cross1) ...
Setting up libfile-homedir-perl (1.004-1) ...
Setting up libgomp1-s390x-cross (8.3.0-2cross1) ...
Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ...
Setting up liblocale-gettext-perl (1.07-3+b4) ...
Setting up libgcc1-s390x-cross (1:8.3.0-2cross1) ...
Setting up cpp-s390x-linux-gnu (4:8.3.0-1) ...
Setting up libstdc++6-s390x-cross (8.3.0-2cross1) ...
Setting up libasan5-s390x-cross (8.3.0-2cross1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up libubsan1-s390x-cross (8.3.0-2cross1) ...
Setting up libxml-sax-perl (1.00+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-libxml-perl (2.0134+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libgcc-8-dev-s390x-cross (8.3.0-2cross1) ...
Setting up gcc-8-s390x-linux-gnu (8.3.0-2cross1) ...
Setting up libxml-simple-perl (2.25-1) ...
Setting up libstdc++-8-dev-s390x-cross (8.3.0-2cross1) ...
Setting up g++-8-s390x-linux-gnu (8.3.0-2cross1) ...
Setting up libconfig-auto-perl (0.44-1) ...
Setting up gcc-s390x-linux-gnu (4:8.3.0-1) ...
Setting up libdebian-dpkgcross-perl (2.6.15-2) ...
Setting up g++-s390x-linux-gnu (4:8.3.0-1) ...
Setting up dpkg-cross (2.6.15-2) ...
Setting up crossbuild-essential-s390x (12.6) ...
Setting up sbuild-build-depends-core-dummy:s390x (0.invalid.0) ...
Processing triggers for libc-bin (2.28-8) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (s390x included in any)
Setup apt archive
-----------------
dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<<BUILDDIR>>/resolver-MbVOeX/apt_archive/sbuild-build-depends-essential-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Sources [483 B]
Get:5 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Packages [571 B]
Fetched 2017 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install essential build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-essential-dummy:s390x
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 840 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 840 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-essential-dummy:s390x.
(Reading database ... 15027 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_s390x.deb ...
Unpacking sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ...
Setting up sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~)
Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~)
dpkg-deb: building package 'sbuild-build-depends-poa-dummy' in '/<<BUILDDIR>>/resolver-MbVOeX/apt_archive/sbuild-build-depends-poa-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-poa-dummy
dpkg-scanpackages: info: Wrote 3 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Sources [631 B]
Get:5 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Packages [711 B]
Fetched 2305 B in 0s (136 kB/s)
Reading package lists...
Reading package lists...
Install poa build dependencies (apt-based resolver)
---------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x
libatomic1:s390x libbsd0 libc6:s390x libc6-dev:s390x libcroco3 libelf1
libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x
libglib2.0-0 libgomp1:s390x libitm1:s390x libncurses6 libpipeline1
libsigsegv2 libstdc++-8-dev:s390x libstdc++6:s390x libtool libubsan1:s390x
libuchardet0 linux-libc-dev:s390x m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
glibc-doc:s390x libc-l10n:s390x locales:s390x manpages-dev:s390x
libstdc++-8-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libidn2-0:s390x libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x
libatomic1:s390x libbsd0 libc6:s390x libc6-dev:s390x libcroco3 libelf1
libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x
libglib2.0-0 libgomp1:s390x libitm1:s390x libncurses6 libpipeline1
libsigsegv2 libstdc++-8-dev:s390x libstdc++6:s390x libtool libubsan1:s390x
libuchardet0 linux-libc-dev:s390x m4 man-db po-debconf
sbuild-build-depends-poa-dummy:s390x
0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.8 MB of archives.
After this operation, 88.9 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ sbuild-build-depends-poa-dummy 0.invalid.0 [872 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main s390x gcc-8-base s390x 8.3.0-3 [190 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main s390x libgcc1 s390x 1:8.3.0-3 [24.8 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.28-8 [2504 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 8.3.0-3 [391 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 8.3.0-3 [321 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 8.3.0-3 [8188 B]
Get:35 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 4.19.28-2 [1155 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.28-8 [2269 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 8.3.0-3 [68.9 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 8.3.0-3 [26.7 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 8.3.0-3 [113 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-8-dev s390x 8.3.0-3 [641 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-8-dev s390x 8.3.0-3 [1503 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libbsd0:amd64.
(Reading database ... 15027 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ...
Unpacking libbsd0:amd64 (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
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Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ...
Unpacking groff-base (1.22.4-3) ...
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Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.1-2) ...
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Unpacking man-db (2.8.5-2) ...
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Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
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Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ...
Unpacking libsigsegv2:amd64 (2.12-2) ...
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Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ...
Unpacking m4 (1.4.18-2) ...
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Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
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Unpacking autopoint (0.19.8.1-9) ...
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Unpacking dh-autoreconf (19) ...
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Unpacking dh-strip-nondeterminism (1.1.2-1) ...
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Unpacking dwz (0.12-3) ...
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Unpacking libglib2.0-0:amd64 (2.58.3-1) ...
Selecting previously unselected package libcroco3:amd64.
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Unpacking gettext (0.19.8.1-9) ...
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Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
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Unpacking po-debconf (1.0.21) ...
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Unpacking debhelper (12.1.1) ...
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Unpacking libgcc1:s390x (1:8.3.0-3) ...
Selecting previously unselected package libc6:s390x.
Preparing to unpack .../29-libc6_2.28-8_s390x.deb ...
Unpacking libc6:s390x (2.28-8) ...
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Unpacking libstdc++6:s390x (8.3.0-3) ...
Selecting previously unselected package libasan5:s390x.
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Unpacking libasan5:s390x (8.3.0-3) ...
Selecting previously unselected package libatomic1:s390x.
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Unpacking libatomic1:s390x (8.3.0-3) ...
Selecting previously unselected package linux-libc-dev:s390x.
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Unpacking linux-libc-dev:s390x (4.19.28-2) ...
Selecting previously unselected package libc6-dev:s390x.
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Unpacking libc6-dev:s390x (2.28-8) ...
Selecting previously unselected package libgomp1:s390x.
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Unpacking libgomp1:s390x (8.3.0-3) ...
Selecting previously unselected package libitm1:s390x.
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Unpacking libitm1:s390x (8.3.0-3) ...
Selecting previously unselected package libubsan1:s390x.
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Unpacking libubsan1:s390x (8.3.0-3) ...
Selecting previously unselected package libgcc-8-dev:s390x.
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Selecting previously unselected package libstdc++-8-dev:s390x.
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Unpacking libstdc++-8-dev:s390x (8.3.0-3) ...
Selecting previously unselected package sbuild-build-depends-poa-dummy:s390x.
Preparing to unpack .../40-sbuild-build-depends-poa-dummy_0.invalid.0_s390x.deb ...
Unpacking sbuild-build-depends-poa-dummy:s390x (0.invalid.0) ...
Setting up libpipeline1:amd64 (1.5.1-2) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libglib2.0-0:amd64 (2.58.3-1) ...
No schema files found: doing nothing.
Setting up linux-libc-dev:s390x (4.19.28-2) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up autotools-dev (20180224.1) ...
Setting up libncurses6:amd64 (6.1+20181013-2) ...
Setting up libsigsegv2:amd64 (2.12-2) ...
Setting up gcc-8-base:s390x (8.3.0-3) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libcroco3:amd64 (0.6.12-3) ...
Setting up libuchardet0:amd64 (0.0.6-3) ...
Setting up libbsd0:amd64 (0.9.1-2) ...
Setting up libelf1:amd64 (0.176-1) ...
Setting up libfile-stripnondeterminism-perl (1.1.2-1) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libtool (2.4.6-10) ...
Setting up m4 (1.4.18-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up bsdmainutils (11.1.2+b1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autoconf (2.69-11) ...
Setting up dwz (0.12-3) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libc6:s390x (2.28-8) ...
Setting up libc6-dev:s390x (2.28-8) ...
Setting up libitm1:s390x (8.3.0-3) ...
Setting up libgcc1:s390x (1:8.3.0-3) ...
Setting up libgomp1:s390x (8.3.0-3) ...
Setting up dh-autoreconf (19) ...
Setting up libatomic1:s390x (8.3.0-3) ...
Setting up libstdc++6:s390x (8.3.0-3) ...
Setting up debhelper (12.1.1) ...
Setting up libasan5:s390x (8.3.0-3) ...
Setting up libubsan1:s390x (8.3.0-3) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up libgcc-8-dev:s390x (8.3.0-3) ...
Setting up libstdc++-8-dev:s390x (8.3.0-3) ...
Setting up sbuild-build-depends-poa-dummy:s390x (0.invalid.0) ...
Processing triggers for libc-bin (2.28-8) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.31.1-15 dpkg-dev_1.19.5 g++-8_8.3.0-3 gcc-8_8.3.0-3 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-3 libstdc++-8-dev-s390x-cross_8.3.0-2cross1 libstdc++6_8.3.0-3 libstdc++6-s390x-cross_8.3.0-2cross1 linux-libc-dev_4.19.28-2
Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-15 binutils-common_2.31.1-15 binutils-s390x-linux-gnu_2.31.1-15 binutils-x86-64-linux-gnu_2.31.1-15 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-3 cpp-8-s390x-linux-gnu_8.3.0-2cross1 cpp-s390x-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-s390x_12.6 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-2 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-3 g++-8-s390x-linux-gnu_8.3.0-2cross1 g++-s390x-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-3 gcc-8-base_8.3.0-3 gcc-8-cross-base_8.3.0-2cross1 gcc-8-s390x-linux-gnu_8.3.0-2cross1 gcc-8-s390x-linux-gnu-base_8.3.0-2cross1 gcc-s390x-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-3 libasan5-s390x-cross_8.3.0-2cross1 libatomic1_8.3.0-3 libatomic1-s390x-cross_8.3.0-2cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-15 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-dev_2.28-8 libc6-dev-s390x-cross_2.28-7cross1 libc6-s390x-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-3 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.248 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.5 libelf1_0.176-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-3 libgcc-8-dev-s390x-cross_8.3.0-2cross1 libgcc1_1:8.3.0-3 libgcc1-s390x-cross_1:8.3.0-2cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-3 libgomp1_8.3.0-3 libgomp1-s390x-cross_8.3.0-2cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-3 libitm1-s390x-cross_8.3.0-2cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-3 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-3 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-5 libpipeline1_1.5.1-2 libquadmath0_8.3.0-3 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.0-1 libstdc++-8-dev_8.3.0-3 libstdc++-8-dev-s390x-cross_8.3.0-2cross1 libstdc++6_8.3.0-3 libstdc++6-s390x-cross_8.3.0-2cross1 libsystemd0_241-2 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-3 libubsan1_8.3.0-3 libubsan1-s390x-cross_8.3.0-2cross1 libuchardet0_0.0.6-3 libudev1_241-2 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-s390x-cross_4.19.20-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-5 perl-base_5.28.1-5 perl-modules-5.28_5.28.1-5 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-poa-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-2 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Sep 27 19:55:06 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./poa_2.0+20060928-7.dsc
dpkg-source: info: extracting poa in /<<BUILDDIR>>/poa-2.0+20060928
dpkg-source: info: unpacking poa_2.0+20060928.orig.tar.gz
dpkg-source: info: unpacking poa_2.0+20060928-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-c1794803-7bf3-499d-95a3-77379716f543
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package poa
dpkg-buildpackage: info: source version 2.0+20060928-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture s390x
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j1 clean
make[1]: Entering directory '/<<BUILDDIR>>/poa-2.0+20060928'
rm -f align_score.o main.o black_flag.o seq_util.o fasta_format.o msa_format.o align_lpo2.o align_lpo_po2.o buildup_lpo.o lpo.o heaviest_bundle.o lpo_format.o create_seq.o remove_bundle.o numeric_data.o stringptr.o poa liblpo.a poa_doc libbflag.a
make[1]: Leaving directory '/<<BUILDDIR>>/poa-2.0+20060928'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/poa-2.0+20060928'
dh_auto_build -- poa
make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=s390x-linux-gnu-pkg-config CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc poa
make[2]: Entering directory '/<<BUILDDIR>>/poa-2.0+20060928'
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align_score.o align_score.c
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.c
In file included from lpo.h:6,
from main.c:3:
main.c: In function 'main':
./default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
main.c:183:3: note: in expansion of macro 'CALLOC'
CALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
^~~~~~
./default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
main.c:221:2: note: in expansion of macro 'REALLOC'
REALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
^~~~~~~
In file included from ./default.h:16,
from lpo.h:6,
from main.c:3:
main.c:225:30: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'FILE *' {aka 'struct _IO_FILE *'} [-Wformat=]
WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
po_list_file),"$Revision: 1.2.2.9 $");
~~~~~~~~~~~~
./black_flag.h:212:10: note: in definition of macro 'WARN_MSG'
(sprintf MESSAGE,\
^~~~~~~
In file included from lpo.h:6,
from main.c:3:
./default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
main.c:254:2: note: in expansion of macro 'REALLOC'
REALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
^~~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o black_flag.o black_flag.c
In file included from black_flag.c:4:
black_flag.c: In function 'black_flag_init_args':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
black_flag.c:109:3: note: in expansion of macro 'CALLOC'
CALLOC(Program_name,len,char);
^~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seq_util.o seq_util.c
In file included from seq_util.c:2:
seq_util.c: In function 'read_score_matrix':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
seq_util.c:170:3: note: in expansion of macro 'CALLOC'
CALLOC (m->gap_penalty_x, m->max_gap_length+2, LPOScore_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
seq_util.c:171:3: note: in expansion of macro 'CALLOC'
CALLOC (m->gap_penalty_y, m->max_gap_length+2, LPOScore_T);
^~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fasta_format.o fasta_format.c
fasta_format.c: In function 'read_fasta':
fasta_format.c:48:2: warning: implicit declaration of function 'stringptr_cat_pos'; did you mean 'stringptr_cat'? [-Wimplicit-function-declaration]
stringptr_cat_pos(&tmp_seq,line,&length);
^~~~~~~~~~~~~~~~~
stringptr_cat
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o msa_format.o msa_format.c
In file included from msa_format.h:17,
from msa_format.c:17:
msa_format.c: In function 'read_clustal':
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:169:7: note: in expansion of macro 'REALLOC'
REALLOC (seq_names, n_seqs, char *);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:171:7: note: in expansion of macro 'REALLOC'
REALLOC (seq_titles, n_seqs, char *);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:174:7: note: in expansion of macro 'REALLOC'
REALLOC (aln_mat, n_seqs, char *);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:176:7: note: in expansion of macro 'REALLOC'
REALLOC (aln_lengths, n_seqs, int);
^~~~~~~
default.h:184:22: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \
~~~~~
default.h:184:22: note: in definition of macro 'REALLOC'
fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
msa_format.c:185:5: note: in expansion of macro 'REALLOC'
REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:185:5: note: in expansion of macro 'REALLOC'
REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
^~~~~~~
msa_format.c: In function 'read_pir':
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:248:7: note: in expansion of macro 'REALLOC'
REALLOC (seq_names, n_seqs, char *);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:250:7: note: in expansion of macro 'REALLOC'
REALLOC (seq_titles, n_seqs, char *);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:252:7: note: in expansion of macro 'REALLOC'
REALLOC (aln_mat, n_seqs, char *);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:254:7: note: in expansion of macro 'REALLOC'
REALLOC (aln_lengths, n_seqs, int);
^~~~~~~
default.h:184:22: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \
~~~~~
default.h:184:22: note: in definition of macro 'REALLOC'
fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
msa_format.c:268:7: note: in expansion of macro 'REALLOC'
REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:268:7: note: in expansion of macro 'REALLOC'
REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
^~~~~~~
msa_format.c: In function 'lpo_from_aln_mat':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:318:3: note: in expansion of macro 'CALLOC'
CALLOC (column_ids, n_seqs+1, int *);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:319:3: note: in expansion of macro 'CALLOC'
CALLOC (res_ids, n_seqs+1, int *);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:326:5: note: in expansion of macro 'CALLOC'
CALLOC (column_ids[i], max_aln_length, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:327:5: note: in expansion of macro 'CALLOC'
CALLOC (res_ids[i], max_aln_length, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:334:3: note: in expansion of macro 'CALLOC'
CALLOC (consens_row, max_aln_length, char);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:347:3: note: in expansion of macro 'CALLOC'
CALLOC (lposeq, 1, LPOSequence_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:351:3: note: in expansion of macro 'CALLOC'
CALLOC (lposeq->sequence, max_aln_length+1, char);
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:369:3: note: in expansion of macro 'REALLOC'
REALLOC (lposeq->sequence, len+1, char);
^~~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:375:5: note: in expansion of macro 'CALLOC'
CALLOC (curr_seq, 1, LPOSequence_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:380:5: note: in expansion of macro 'CALLOC'
CALLOC (curr_seq->sequence, aln_lengths[i]+1, char);
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:398:5: note: in expansion of macro 'REALLOC'
REALLOC (curr_seq->sequence, len+1, char);
^~~~~~~
msa_format.c:404:5: warning: implicit declaration of function 'build_seq_to_po_index' [-Wimplicit-function-declaration]
build_seq_to_po_index (lposeq);
^~~~~~~~~~~~~~~~~~~~~
In file included from msa_format.h:17,
from msa_format.c:17:
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:406:5: note: in expansion of macro 'CALLOC'
CALLOC (al_x, len, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:407:5: note: in expansion of macro 'CALLOC'
CALLOC (al_y, lposeq->length, int);
^~~~~~
msa_format.c:428:5: warning: implicit declaration of function 'fuse_ring_identities' [-Wimplicit-function-declaration]
fuse_ring_identities (lposeq->length, lposeq->letter,
^~~~~~~~~~~~~~~~~~~~
In file included from msa_format.h:17,
from msa_format.c:17:
msa_format.c: In function 'filter_sequence_set':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
msa_format.c:485:3: note: in expansion of macro 'CALLOC'
CALLOC (keep_seq, n_seqs, int);
^~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align_lpo2.o align_lpo2.c
In file included from align_lpo2.c:2:
align_lpo2.c: In function 'get_seq_left_and_final':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:60:3: note: in expansion of macro 'CALLOC'
CALLOC (is_final_node_x, len_x, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:66:3: note: in expansion of macro 'CALLOC'
CALLOC (x_left, len_x, LPOLetterLink_T *);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:70:7: note: in expansion of macro 'CALLOC'
CALLOC (x_left[i], 1, LPOLetterLink_T);
^~~~~~
align_lpo2.c: In function 'trace_back_lpo_alignment':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:96:3: note: in expansion of macro 'CALLOC'
CALLOC (x_al, len_x, LPOLetterRef_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:97:3: note: in expansion of macro 'CALLOC'
CALLOC (y_al, len_y, LPOLetterRef_T);
^~~~~~
align_lpo2.c: In function 'align_lpo':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:185:3: note: in expansion of macro 'CALLOC'
CALLOC (next_gap_array, max_gap_length + 2, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:186:3: note: in expansion of macro 'CALLOC'
CALLOC (next_perp_gap_array, max_gap_length + 2, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:199:3: note: in expansion of macro 'CALLOC'
CALLOC (move, len_y, DPMove_T *);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:201:5: note: in expansion of macro 'CALLOC'
CALLOC (move[i], len_x, DPMove_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:204:3: note: in expansion of macro 'CALLOC'
CALLOC (init_col_score, len_y+1, DPScore_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:207:3: note: in expansion of macro 'CALLOC'
CALLOC (curr_score, len_x+1, DPScore_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo2.c:209:3: note: in expansion of macro 'CALLOC'
CALLOC (prev_score, len_x+1, DPScore_T);
^~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align_lpo_po2.o align_lpo_po2.c
In file included from align_lpo_po2.c:2:
align_lpo_po2.c: In function 'get_lpo_stats':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:41:3: note: in expansion of macro 'CALLOC'
CALLOC (node_type, len, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:42:3: note: in expansion of macro 'CALLOC'
CALLOC (refs_from_right, len, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:43:3: note: in expansion of macro 'CALLOC'
CALLOC (tmp, len, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:44:3: note: in expansion of macro 'CALLOC'
CALLOC (left_links, len, LPOLetterLink_T *);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:71:7: note: in expansion of macro 'CALLOC'
CALLOC (left_links[i], 1, LPOLetterLink_T);
^~~~~~
align_lpo_po2.c: In function 'trace_back_lpo_alignment':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:120:3: note: in expansion of macro 'CALLOC'
CALLOC (x_al, len_x, LPOLetterRef_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:121:3: note: in expansion of macro 'CALLOC'
CALLOC (y_al, len_y, LPOLetterRef_T);
^~~~~~
align_lpo_po2.c: In function 'align_lpo_po':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:227:3: note: in expansion of macro 'CALLOC'
CALLOC (next_gap_array, max_gap_length + 2, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:228:3: note: in expansion of macro 'CALLOC'
CALLOC (next_perp_gap_array, max_gap_length + 2, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:254:3: note: in expansion of macro 'CALLOC'
CALLOC (move, len_y, DPMove_T *);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:256:5: note: in expansion of macro 'CALLOC'
CALLOC (move[i], len_x, DPMove_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:259:3: note: in expansion of macro 'CALLOC'
CALLOC (init_col_score, len_y+1, DPScore_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:262:3: note: in expansion of macro 'CALLOC'
CALLOC (score_rows, len_y+1, DPScore_T *);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:264:3: note: in expansion of macro 'CALLOC'
CALLOC (score_rows[-1], len_x+1, DPScore_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
align_lpo_po2.c:312:5: note: in expansion of macro 'CALLOC'
CALLOC (score_rows[i], len_x+1, DPScore_T);
^~~~~~
align_lpo_po2.c:438:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y);
~~^ ~~~~~~~~~
%d
align_lpo_po2.c:438:69: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int' [-Wformat=]
fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y);
~~^ ~~~~~~~~~
%d
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o buildup_lpo.o buildup_lpo.c
In file included from buildup_lpo.c:3:
buildup_lpo.c: In function 'clip_unaligned_ends':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:146:3: note: in expansion of macro 'CALLOC'
CALLOC(temp,seq->length,LPOLetter_T); /* ALLOCATE NEW letter[] COPY */
^~~~~~
buildup_lpo.c: In function 'read_seqpair_scorefile':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:327:3: note: in expansion of macro 'CALLOC'
CALLOC (adj_score, nseq, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:330:3: note: in expansion of macro 'CALLOC'
CALLOC (score_list, max_nscore, SeqPairScore_T);
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:353:2: note: in expansion of macro 'REALLOC'
REALLOC (score_list, max_nscore, SeqPairScore_T);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:374:2: note: in expansion of macro 'REALLOC'
REALLOC (score_list, max_nscore, SeqPairScore_T);
^~~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:394:2: note: in expansion of macro 'REALLOC'
REALLOC (score_list, max_nscore, SeqPairScore_T);
^~~~~~~
buildup_lpo.c: In function 'buildup_progressive_lpo':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:445:3: note: in expansion of macro 'CALLOC'
CALLOC(seq_cluster,nseq,int); /* MAPS SEQS (or CLUSTERS) TO CLUSTER THEY'RE IN */
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:446:3: note: in expansion of macro 'CALLOC'
CALLOC(seq_id_in_cluster,nseq,int); /* INDEXES SEQS (or CLUSTERS) WITHIN EACH CLUSTER */
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:447:3: note: in expansion of macro 'CALLOC'
CALLOC(cluster_size,nseq,int); /* COUNTS SEQS IN SAME CLUSTER (updated w/ merges) */
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:448:3: note: in expansion of macro 'CALLOC'
CALLOC(initial_nseq,nseq,int); /* COUNTS SEQS INITIALLY IN EACH CLUSTER (not updated w/ merges) */
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
buildup_lpo.c:538:5: note: in expansion of macro 'CALLOC'
CALLOC (perm, nseq_tot, int);
^~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lpo.o lpo.c
In file included from lpo.c:3:
lpo.c: In function 'lpo_init':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:15:3: note: in expansion of macro 'CALLOC'
CALLOC(seq->letter,seq->length,LPOLetter_T);
^~~~~~
lpo.c: In function 'build_seq_to_po_index':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:157:5: note: in expansion of macro 'CALLOC'
CALLOC(seq->source_seq[i].seq_to_po,seq->source_seq[i].length,int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:158:5: note: in expansion of macro 'CALLOC'
CALLOC(seq->source_seq[i].po_to_seq,seq->length,int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:159:5: note: in expansion of macro 'CALLOC'
CALLOC(seq->source_seq[i].sequence,seq->source_seq[i].length+1,char);
^~~~~~
lpo.c: In function 'save_lpo_source':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:212:5: note: in expansion of macro 'CALLOC'
CALLOC(memptr,BUF,ATYPE) } \
^~~~~~
lpo.c:189:3: note: in expansion of macro 'REBUFF'
REBUFF(seq->source_seq,seq->nsource_seq,SOURCE_SEQ_BUFFER_CHUNK,
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:215:5: note: in expansion of macro 'REALLOC'
REALLOC(memptr,(NUM)+(BUF),ATYPE); \
^~~~~~~
lpo.c:189:3: note: in expansion of macro 'REBUFF'
REBUFF(seq->source_seq,seq->nsource_seq,SOURCE_SEQ_BUFFER_CHUNK,
^~~~~~
lpo.c: In function 'save_lpo_source_list':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:213:3: note: in expansion of macro 'CALLOC'
CALLOC(list,nsource_seq,int);
^~~~~~
lpo.c: In function 'add_lpo_link':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:238:3: note: in expansion of macro 'CALLOC'
CALLOC(list->more,1,LPOLetterLink_T); /* ADD ENTRY TO LINKED LIST */
^~~~~~
lpo.c: In function 'add_lpo_sources':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:252:7: note: in expansion of macro 'CALLOC'
CALLOC(new_s->more,1,LPOLetterSource_T);
^~~~~~
lpo.c: In function 'reindex_lpo_source_seqs':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:270:3: note: in expansion of macro 'CALLOC'
CALLOC (map, len, int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:271:3: note: in expansion of macro 'CALLOC'
CALLOC (invmap, len, int);
^~~~~~
lpo.c: In function 'reindex_lpo_fusion':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:427:3: note: in expansion of macro 'CALLOC'
CALLOC(do_fuse,len_y,char); /* MARK POSITIONS TO FUSE seq_y TO seq_x */
^~~~~~
lpo.c: In function 'copy_fuse_lpo_remap':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:500:3: note: in expansion of macro 'CALLOC'
CALLOC(new_seq,1,LPOSequence_T); /* CREATE A NEW HOLDER */
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:501:3: note: in expansion of macro 'CALLOC'
CALLOC(new_x,len_x,LPOLetterRef_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:502:3: note: in expansion of macro 'CALLOC'
CALLOC(new_y,len_y,LPOLetterRef_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:505:3: note: in expansion of macro 'CALLOC'
CALLOC(new_lpo,new_len,LPOLetter_T); /* ALLOCATE NEW LINEARIZED PO */
^~~~~~
lpo.c: In function 'copy_lpo':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:564:3: note: in expansion of macro 'CALLOC'
CALLOC(x_to_y,holder_x->length,LPOLetterRef_T);
^~~~~~
lpo.c: In function 'fuse_lpo_remap':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:618:3: note: in expansion of macro 'CALLOC'
CALLOC(new_x,len_x,LPOLetterRef_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:619:3: note: in expansion of macro 'CALLOC'
CALLOC(new_y,len_y,LPOLetterRef_T);
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo.c:622:3: note: in expansion of macro 'REALLOC'
REALLOC(seq_x,new_len,LPOLetter_T); /* EXPAND seq_x TO HOLD FUSED LPO */
^~~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o heaviest_bundle.o heaviest_bundle.c
In file included from heaviest_bundle.c:3:
heaviest_bundle.c: In function 'heaviest_bundle':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
heaviest_bundle.c:27:3: note: in expansion of macro 'CALLOC'
CALLOC(path,len,LPOLetterRef_T); /* GET MEMORY FOR DYNAMIC PROGRAMMING */
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
heaviest_bundle.c:28:3: note: in expansion of macro 'CALLOC'
CALLOC(score,len,LPOScore_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
heaviest_bundle.c:29:3: note: in expansion of macro 'CALLOC'
CALLOC(contains_pos,nsource_seq,int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
heaviest_bundle.c:67:3: note: in expansion of macro 'CALLOC'
CALLOC(best_path,len,LPOLetterRef_T); /* MEMORY FOR STORING BEST PATH */
^~~~~~
heaviest_bundle.c: In function 'assign_sequence_bundle_id':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
heaviest_bundle.c:90:3: note: in expansion of macro 'CALLOC'
CALLOC(bundle_count,seq->nsource_seq,int);
^~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lpo_format.o lpo_format.c
In file included from lpo_format.c:3:
lpo_format.c: In function 'read_lpo':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:60:3: note: in expansion of macro 'CALLOC'
CALLOC(seq,1,LPOSequence_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:71:3: note: in expansion of macro 'CALLOC'
CALLOC(seq->letter,length,LPOLetter_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:241:5: note: in expansion of macro 'CALLOC'
CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~
lpo_format.c:72:3: note: in expansion of macro 'GETMEM'
GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T);
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:245:5: note: in expansion of macro 'REALLOC'
REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~~
lpo_format.c:72:3: note: in expansion of macro 'GETMEM'
GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:73:3: note: in expansion of macro 'CALLOC'
CALLOC(pos_count,nsource_seq,int);
^~~~~~
lpo_format.c: In function 'read_lpo_select':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:159:3: note: in expansion of macro 'CALLOC'
CALLOC(seq,1,LPOSequence_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:170:3: note: in expansion of macro 'CALLOC'
CALLOC(seq->letter,length,LPOLetter_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:241:5: note: in expansion of macro 'CALLOC'
CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~
lpo_format.c:171:3: note: in expansion of macro 'GETMEM'
GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T);
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:245:5: note: in expansion of macro 'REALLOC'
REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~~
lpo_format.c:171:3: note: in expansion of macro 'GETMEM'
GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:172:3: note: in expansion of macro 'CALLOC'
CALLOC(pos_count,nsource_seq,int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:196:3: note: in expansion of macro 'CALLOC'
CALLOC(iseq_compact,nsource_seq,int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:197:3: note: in expansion of macro 'CALLOC'
CALLOC(last_pos,nsource_seq,int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:198:3: note: in expansion of macro 'CALLOC'
CALLOC(match_pos,nsource_seq,int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:229:3: note: in expansion of macro 'CALLOC'
CALLOC(link_list,seq->length,int); /*TEMPORARY DATA FOR COMPACTION MAPPING */
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:230:3: note: in expansion of macro 'CALLOC'
CALLOC(pos_compact,seq->length,int);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:231:3: note: in expansion of macro 'CALLOC'
CALLOC(ring_old,seq->length,int);
^~~~~~
lpo_format.c: In function 'xlate_lpo_to_al':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:353:3: note: in expansion of macro 'CALLOC'
CALLOC(seq_pos,seq->nsource_seq,char *); /* ALLOCATE MAP ARRAY*/
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:354:3: note: in expansion of macro 'CALLOC'
CALLOC(p,seq->nsource_seq*nring,char);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
lpo_format.c:374:5: note: in expansion of macro 'CALLOC'
CALLOC(include_in_save,nring,char); /* BLANK FLAGS: WHAT RINGS TO SHOW*/
^~~~~~
lpo_format.c: In function 'read_lpo':
lpo_format.c:61:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(ifile,"VERSION=%s",version);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lpo_format.c:62:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(ifile," NAME=%[^\n]",name);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lpo_format.c:63:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(ifile," TITLE=%[^\n]",title);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lpo_format.c:86:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(ifile,"%*[ \t]");
^~~~~~~~~~~~~~~~~~~~~~~
lpo_format.c: In function 'read_lpo_select':
lpo_format.c:160:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(ifile,"VERSION=%s",version);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lpo_format.c:161:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(ifile," NAME=%[^\n]",name);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lpo_format.c:162:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(ifile," TITLE=%[^\n]",title);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lpo_format.c:185:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(ifile,"%*[ \t]");
^~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o create_seq.o create_seq.c
In file included from create_seq.c:3:
create_seq.c: In function 'create_seq':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:212:5: note: in expansion of macro 'CALLOC'
CALLOC(memptr,BUF,ATYPE) } \
^~~~~~
create_seq.c:29:3: note: in expansion of macro 'REBUFF'
REBUFF(*p_seq,nseq,SEQUENCE_BUFFER_CHUNK,Sequence_T); /* ALLOCATE MEMORY*/
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:215:5: note: in expansion of macro 'REALLOC'
REALLOC(memptr,(NUM)+(BUF),ATYPE); \
^~~~~~~
create_seq.c:29:3: note: in expansion of macro 'REBUFF'
REBUFF(*p_seq,nseq,SEQUENCE_BUFFER_CHUNK,Sequence_T); /* ALLOCATE MEMORY*/
^~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o remove_bundle.o remove_bundle.c
In file included from remove_bundle.c:4:
remove_bundle.c: In function 'compact_links':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
remove_bundle.c:16:3: note: in expansion of macro 'CALLOC'
CALLOC(link,1,LPOLetterLink_T);
^~~~~~
remove_bundle.c: In function 'compact_sources':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
remove_bundle.c:59:3: note: in expansion of macro 'CALLOC'
CALLOC(source,1,LPOLetterSource_T);
^~~~~~
remove_bundle.c: In function 'remove_bundle':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
remove_bundle.c:128:3: note: in expansion of macro 'CALLOC'
CALLOC(old_to_new,seq->length,int); /* CREATE MAPPING ARRAY */
^~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o numeric_data.o numeric_data.c
In file included from ./lpo.h:6,
from numeric_data.c:3:
numeric_data.c: In function 'new_numeric_data':
./default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
./default.h:212:5: note: in expansion of macro 'CALLOC'
CALLOC(memptr,BUF,ATYPE) } \
^~~~~~
numeric_data.c:18:3: note: in expansion of macro 'REBUFF'
REBUFF(source_seq->data,source_seq->ndata,NUMDATA_BUFFER_CHUNK,LPONumericData_T);
^~~~~~
./default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
./default.h:215:5: note: in expansion of macro 'REALLOC'
REALLOC(memptr,(NUM)+(BUF),ATYPE); \
^~~~~~~
numeric_data.c:18:3: note: in expansion of macro 'REBUFF'
REBUFF(source_seq->data,source_seq->ndata,NUMDATA_BUFFER_CHUNK,LPONumericData_T);
^~~~~~
./default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
numeric_data.c:25:3: note: in expansion of macro 'CALLOC'
CALLOC(data->data,source_seq->length,double); /* ALLOCATE THE ARRAY */
^~~~~~
numeric_data.c: In function 'read_numeric_data':
numeric_data.c:139:4: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(ifile," %lf",data->data+j);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/poa-2.0+20060928=. -fstack-protector-strong -Wformat -Werror=format-security -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stringptr.o stringptr.c
In file included from stringptr.c:2:
stringptr.c: In function 'stringptr_cat_pos':
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
stringptr.c:30:3: note: in expansion of macro 'CALLOC'
CALLOC(s2_temp,s2_len,char); /* ALLOCATE TEMP STORAGE */
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:241:5: note: in expansion of macro 'CALLOC'
CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~
stringptr.c:40:3: note: in expansion of macro 'GETMEM'
GETMEM(s1->p,total_len,
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:245:5: note: in expansion of macro 'REALLOC'
REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~~
stringptr.c:40:3: note: in expansion of macro 'GETMEM'
GETMEM(s1->p,total_len,
^~~~~~
stringptr.c: In function 'stringptr_cpy':
default.h:147:22: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__FILE__,__LINE__,STRINGIFY(memptr),(N)); \
~~~
default.h:147:22: note: in definition of macro 'CALLOC'
fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stringptr.c:67:3: note: in expansion of macro 'GETMEM'
GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char);
^~~~~~
default.h:154:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~
default.h:154:20: note: in definition of macro 'CALLOC'
fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stringptr.c:67:3: note: in expansion of macro 'GETMEM'
GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~
default.h:241:5: note: in expansion of macro 'CALLOC'
CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~
stringptr.c:67:3: note: in expansion of macro 'GETMEM'
GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char);
^~~~~~
default.h:155:20: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:241:5: note: in expansion of macro 'CALLOC'
CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~
stringptr.c:67:3: note: in expansion of macro 'GETMEM'
GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char);
^~~~~~
default.h:184:22: warning: format '%d' expects argument of type 'int', but argument 6 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \
~~~~~
default.h:184:22: note: in definition of macro 'REALLOC'
fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stringptr.c:67:3: note: in expansion of macro 'GETMEM'
GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char);
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
default.h:245:5: note: in expansion of macro 'REALLOC'
REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~~
stringptr.c:67:3: note: in expansion of macro 'GETMEM'
GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char);
^~~~~~
default.h:196:22: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long unsigned int' [-Wformat=]
fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \
^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
default.h:245:5: note: in expansion of macro 'REALLOC'
REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\
^~~~~~~
stringptr.c:67:3: note: in expansion of macro 'GETMEM'
GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char);
^~~~~~
rm -f liblpo.a
ar rc liblpo.a black_flag.o seq_util.o fasta_format.o msa_format.o align_lpo2.o align_lpo_po2.o buildup_lpo.o lpo.o heaviest_bundle.o lpo_format.o create_seq.o remove_bundle.o numeric_data.o stringptr.o
ranlib liblpo.a
s390x-linux-gnu-gcc -o poa align_score.o main.o -lm liblpo.a -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<BUILDDIR>>/poa-2.0+20060928'
make[1]: Leaving directory '/<<BUILDDIR>>/poa-2.0+20060928'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_installdirs -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/poa/usr/bin/poa was not linked against libm.so.6 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package poa: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package poa: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'poa' in '../poa_2.0+20060928-7_s390x.deb'.
dpkg-deb: building package 'poa-dbgsym' in '../poa-dbgsym_2.0+20060928-7_s390x.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any >../poa_2.0+20060928-7_s390x.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-03-21T18:21:56Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
lintian
-------
Setup apt archive
-----------------
Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<BUILDDIR>>/resolver-MbVOeX/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-poa-dummy
dpkg-scanpackages: info: Wrote 4 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Sources [750 B]
Get:5 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ Packages [823 B]
Fetched 2536 B in 0s (147 kB/s)
Reading package lists...
Reading package lists...
Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl
libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl
libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl
libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl
libio-pty-perl libio-socket-ssl-perl libipc-run-perl
libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl
libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl
libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl
libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl
libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils
perl-openssl-defaults readline-common t1utils
Suggested packages:
libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl
binutils-multiarch libtext-template-perl readline-doc
Recommended packages:
gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl
libsereal-perl libtest-fatal-perl libtest-refcount-perl
libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl
libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl
The following NEW packages will be installed:
diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl
libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl
libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl
libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl
libio-pty-perl libio-socket-ssl-perl libipc-run-perl
libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl
libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl
libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl
libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl
libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils
perl-openssl-defaults readline-common
sbuild-build-depends-lintian-dummy:s390x t1utils
0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded.
Need to get 7775 kB of archives.
After this operation, 20.8 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-MbVOeX/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-1 [640 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-1 [1531 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.11.0 [1187 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 7775 kB in 0s (49.8 MB/s)
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(Reading database ... 17763 files and directories currently installed.)
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+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
poa_2.0+20060928-7_s390x.changes:
---------------------------------
Format: 1.8
Date: Thu, 27 Sep 2018 21:51:23 +0200
Source: poa
Binary: poa poa-dbgsym
Built-For-Profiles: cross nocheck
Architecture: s390x
Version: 2.0+20060928-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
poa - Partial Order Alignment for multiple sequence alignment
Changes:
poa (2.0+20060928-7) unstable; urgency=medium
.
[ Steffen Moeller ]
* Added ref to OMICtools entry
.
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* hardening=+all
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: poa
Binary: poa
Architecture: s390x
Version: 2.0+20060928-7
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Thu, 21 Mar 2019 18:21:56 +0000
Build-Path: /<<BUILDDIR>>/poa-2.0+20060928
Installed-Build-Depends:
autoconf (= 2.69-11),
automake (= 1:1.16.1-4),
autopoint (= 0.19.8.1-9),
autotools-dev (= 20180224.1),
base-files (= 10.1),
base-passwd (= 3.5.46),
bash (= 5.0-2),
binutils (= 2.31.1-15),
binutils-common (= 2.31.1-15),
binutils-x86-64-linux-gnu (= 2.31.1-15),
bsdmainutils (= 11.1.2+b1),
bsdutils (= 1:2.33.1-0.1),
build-essential (= 12.6),
bzip2 (= 1.0.6-9),
coreutils (= 8.30-3),
cpp (= 4:8.3.0-1),
cpp-8 (= 8.3.0-3),
dash (= 0.5.10.2-5),
debconf (= 1.5.71),
debhelper (= 12.1.1),
debianutils (= 4.8.6.1),
dh-autoreconf (= 19),
dh-strip-nondeterminism (= 1.1.2-1),
diffutils (= 1:3.7-2),
dpkg (= 1.19.5),
dpkg-dev (= 1.19.5),
dwz (= 0.12-3),
fdisk (= 2.33.1-0.1),
file (= 1:5.35-4),
findutils (= 4.6.0+git+20190209-2),
g++ (= 4:8.3.0-1),
g++-8 (= 8.3.0-3),
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gcc-8-base (= 8.3.0-3),
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grep (= 3.3-1),
groff-base (= 1.22.4-3),
gzip (= 1.9-3),
hostname (= 3.21),
init-system-helpers (= 1.56+nmu1),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-4),
libarchive-zip-perl (= 1.64-1),
libasan5 (= 8.3.0-3),
libatomic1 (= 8.3.0-3),
libattr1 (= 1:2.4.48-4),
libaudit-common (= 1:2.8.4-2),
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libbinutils (= 2.31.1-15),
libblkid1 (= 2.33.1-0.1),
libbsd0 (= 0.9.1-2),
libbz2-1.0 (= 1.0.6-9),
libc-bin (= 2.28-8),
libc-dev-bin (= 2.28-8),
libc6 (= 2.28-8),
libc6-dev (= 2.28-8),
libcap-ng0 (= 0.7.9-2),
libcc1-0 (= 8.3.0-3),
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libdpkg-perl (= 1.19.5),
libelf1 (= 0.176-1),
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libfile-stripnondeterminism-perl (= 1.1.2-1),
libgcc-8-dev (= 8.3.0-3),
libgcc1 (= 1:8.3.0-3),
libgcrypt20 (= 1.8.4-5),
libgdbm-compat4 (= 1.18.1-4),
libgdbm6 (= 1.18.1-4),
libglib2.0-0 (= 2.58.3-1),
libgmp10 (= 2:6.1.2+dfsg-4),
libgomp1 (= 8.3.0-3),
libgpg-error0 (= 1.35-1),
libicu63 (= 63.1-6),
libisl19 (= 0.20-2),
libitm1 (= 8.3.0-3),
liblsan0 (= 8.3.0-3),
liblz4-1 (= 1.8.3-1),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.35-4),
libmagic1 (= 1:5.35-4),
libmount1 (= 2.33.1-0.1),
libmpc3 (= 1.1.0-1),
libmpfr6 (= 4.0.2-1),
libmpx2 (= 8.3.0-3),
libncurses6 (= 6.1+20181013-2),
libncursesw6 (= 6.1+20181013-2),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpcre3 (= 2:8.39-12),
libperl5.28 (= 5.28.1-5),
libpipeline1 (= 1.5.1-2),
libquadmath0 (= 8.3.0-3),
libseccomp2 (= 2.3.3-4),
libselinux1 (= 2.8-1+b1),
libsigsegv2 (= 2.12-2),
libsmartcols1 (= 2.33.1-0.1),
libstdc++-8-dev (= 8.3.0-3),
libstdc++6 (= 8.3.0-3),
libsystemd0 (= 241-2),
libtinfo6 (= 6.1+20181013-2),
libtool (= 2.4.6-10),
libtsan0 (= 8.3.0-3),
libubsan1 (= 8.3.0-3),
libuchardet0 (= 0.0.6-3),
libudev1 (= 241-2),
libunistring2 (= 0.9.10-1),
libuuid1 (= 2.33.1-0.1),
libxml2 (= 2.9.4+dfsg1-7+b3),
linux-libc-dev (= 4.19.28-2),
login (= 1:4.5-1.1),
m4 (= 1.4.18-2),
make (= 4.2.1-1.2),
man-db (= 2.8.5-2),
mawk (= 1.3.3-17+b3),
ncurses-base (= 6.1+20181013-2),
ncurses-bin (= 6.1+20181013-2),
patch (= 2.7.6-3),
perl (= 5.28.1-5),
perl-base (= 5.28.1-5),
perl-modules-5.28 (= 5.28.1-5),
po-debconf (= 1.0.21),
sed (= 4.7-1),
sensible-utils (= 0.0.12),
sysvinit-utils (= 2.93-8),
tar (= 1.30+dfsg-5),
util-linux (= 2.33.1-0.1),
xz-utils (= 5.2.4-1),
zlib1g (= 1:1.2.11.dfsg-1)
Environment:
DEB_BUILD_OPTIONS="nocheck parallel=1"
DEB_BUILD_PROFILES="cross nocheck"
LANG="en_US.UTF-8"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1538077883"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
poa-dbgsym_2.0+20060928-7_s390x.deb
-----------------------------------
new Debian package, version 2.0.
size 109868 bytes: control archive=536 bytes.
368 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: poa-dbgsym
Source: poa
Version: 2.0+20060928-7
Auto-Built-Package: debug-symbols
Architecture: s390x
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 125
Depends: poa (= 2.0+20060928-7)
Section: debug
Priority: optional
Description: debug symbols for poa
Build-Ids: 8a0b1c403f7801b5ab2097fbee59fd18be510d66
drwxr-xr-x root/root 0 2018-09-27 19:51 ./
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/lib/
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/lib/debug/.build-id/8a/
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drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-09-27 19:51 ./usr/share/doc/poa-dbgsym -> poa
poa_2.0+20060928-7_s390x.deb
----------------------------
new Debian package, version 2.0.
size 50756 bytes: control archive=1404 bytes.
932 bytes, 21 lines control
1337 bytes, 20 lines md5sums
Package: poa
Version: 2.0+20060928-7
Architecture: s390x
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 139
Depends: libc6 (>= 2.7)
Suggests: blast2
Enhances: t-coffee
Section: science
Priority: optional
Homepage: http://poamsa.sourceforge.net/
Description: Partial Order Alignment for multiple sequence alignment
POA is Partial Order Alignment, a fast program for multiple sequence
alignment (MSA) in bioinformatics. Its advantages are speed,
scalability, sensitivity, and the superior ability to handle branching
/ indels in the alignment. Partial order alignment is an approach to
MSA, which can be combined with existing methods such as progressive
alignment. POA optimally aligns a pair of MSAs and which therefore can
be applied directly to progressive alignment methods such as CLUSTAL.
For large alignments, Progressive POA is 10-30 times faster than
CLUSTALW.
drwxr-xr-x root/root 0 2018-09-27 19:51 ./
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/bin/
-rwxr-xr-x root/root 88048 2018-09-27 19:51 ./usr/bin/poa
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/poa/
-rw-r--r-- root/root 365 2018-09-27 19:51 ./usr/share/doc/poa/NEWS.Debian.gz
-rw-r--r-- root/root 574 2018-09-27 19:51 ./usr/share/doc/poa/README.Debian
-rw-r--r-- root/root 4989 2004-03-22 20:01 ./usr/share/doc/poa/README.gz
-rw-r--r-- root/root 261 2018-09-27 19:51 ./usr/share/doc/poa/README.test
-rw-r--r-- root/root 1448 2018-09-27 19:51 ./usr/share/doc/poa/changelog.Debian.gz
-rw-r--r-- root/root 1286 2018-09-27 19:51 ./usr/share/doc/poa/copyright
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/poa/examples/
-rw-r--r-- root/root 2747 2004-03-12 05:28 ./usr/share/doc/poa/examples/multidom.seq
-rw-r--r-- root/root 586 2018-09-27 19:51 ./usr/share/doc/poa/run-unit-test
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/doc/poa/test_data/
-rw-r--r-- root/root 2061 2018-09-27 19:51 ./usr/share/doc/poa/test_data/blosum80.mat
-rw-r--r-- root/root 3099 2018-09-27 19:51 ./usr/share/doc/poa/test_data/clustal.out
-rw-r--r-- root/root 39 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test1.fa
-rw-r--r-- root/root 243 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test2.fa
-rw-r--r-- root/root 134 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test3.fa
-rw-r--r-- root/root 1089 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test4.fa
-rw-r--r-- root/root 56 2018-09-27 19:51 ./usr/share/doc/poa/test_data/test5.fa
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/man/
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/man/man1/
-rw-r--r-- root/root 1969 2018-09-27 19:51 ./usr/share/man/man1/poa.1.gz
drwxr-xr-x root/root 0 2018-09-27 19:51 ./usr/share/poa/
-rw-r--r-- root/root 3321 2004-03-12 08:10 ./usr/share/poa/blosum80.mat
-rw-r--r-- root/root 3365 2004-03-12 06:08 ./usr/share/poa/blosum80_trunc.mat
-rwxr-xr-x root/root 1284 2004-03-22 19:56 ./usr/share/poa/make_pscores.pl
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 3032
Build-Time: 10
Distribution: unstable
Foreign Architectures: s390x
Host Architecture: s390x
Install-Time: 20
Job: poa_2.0+20060928-7
Lintian: pass
Machine Architecture: amd64
Package: poa
Package-Time: 40
Source-Version: 2.0+20060928-7
Space: 3032
Status: successful
Version: 2.0+20060928-7
--------------------------------------------------------------------------------
Finished at 2019-03-21T18:21:56Z
Build needed 00:00:40, 3032k disk space