sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | prank 0.0.170427+dfsg-3 (amd64) Mon, 07 Jun 2021 09:39:05 +0000 | +==============================================================================+ Package: prank Version: 0.0.170427+dfsg-3 Source Version: 0.0.170427+dfsg-3 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-4849ea7d-d36d-47a7-bdf6-e6b0b1778196' with '<>' I: NOTICE: Log filtering will replace 'build/prank-usf3O8/resolver-5f6ZDB' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [161 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [8633 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9175 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8507 kB] Fetched 26.5 MB in 8s (3199 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'prank' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/prank.git Please use: git clone https://salsa.debian.org/med-team/prank.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 115 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main prank 0.0.170427+dfsg-3 (dsc) [2035 B] Get:2 http://mirror.einval.org/debian sid/main prank 0.0.170427+dfsg-3 (tar) [102 kB] Get:3 http://mirror.einval.org/debian sid/main prank 0.0.170427+dfsg-3 (diff) [11.0 kB] Fetched 115 kB in 0s (2473 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/prank-usf3O8/prank-0.0.170427+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/prank-usf3O8' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [404 B] Get:5 copy:/<>/apt_archive ./ Packages [494 B] Fetched 1855 B in 0s (45.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-10-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-10-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-10-base:amd64 gcc-10-cross-base gcc-10-x86-64-linux-gnu gcc-10-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:amd64 libgcc-10-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl1.1:amd64 libstdc++-10-dev:amd64 libstdc++-10-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch g++-10-multilib-x86-64-linux-gnu gcc-10-doc gcc-10-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 libstdc++-10-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libnss-nis:amd64 libnss-nisplus:amd64 libarchive-cpio-perl krb5-locales:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-10-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-10-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-10-base:amd64 gcc-10-cross-base gcc-10-x86-64-linux-gnu gcc-10-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:amd64 libgcc-10-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl1.1:amd64 libstdc++-10-dev:amd64 libstdc++-10-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils ucf 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 205 MB of archives. After this operation, 937 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get:8 http://mirror.einval.org/debian sid/main amd64 gcc-10-base amd64 10.2.1-6 [201 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.39-3 [69.1 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.69-14 [313 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.3-2 [814 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 gcc-10-x86-64-linux-gnu-base arm64 10.2.1-6cross1 [202 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 cpp-10-x86-64-linux-gnu arm64 10.2.1-6cross1 [46.2 MB] Get:23 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:10.2.1-1 [16.8 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu1 [31.5 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 binutils-x86-64-linux-gnu arm64 2.35.2-2 [1966 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 gcc-10-cross-base all 10.2.1-6cross1 [197 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-amd64-cross all 10.2.1-6cross1 [41.3 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libgomp1-amd64-cross all 10.2.1-6cross1 [97.8 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libitm1-amd64-cross all 10.2.1-6cross1 [25.3 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libatomic1-amd64-cross all 10.2.1-6cross1 [8752 B] Get:31 http://mirror.einval.org/debian sid/main arm64 libasan6-amd64-cross all 10.2.1-6cross1 [2057 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 10.2.1-6cross1 [827 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libtsan0-amd64-cross all 10.2.1-6cross1 [1992 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.31-9cross4 [1568 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 10.2.1-6cross1 [452 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 10.2.1-6cross1 [776 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 10.2.1-6cross1 [145 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libgcc-10-dev-amd64-cross all 10.2.1-6cross1 [2326 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 gcc-10-x86-64-linux-gnu arm64 10.2.1-6cross1 [52.2 MB] Get:40 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:10.2.1-1 [1460 B] Get:41 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.10.13-1cross4 [1396 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.31-9cross4 [2344 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libstdc++-10-dev-amd64-cross all 10.2.1-6cross1 [1723 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 g++-10-x86-64-linux-gnu arm64 10.2.1-6cross1 [49.2 MB] Get:45 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:10.2.1-1 [1180 B] Get:46 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-6 [8468 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-2+b1 [326 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu1 [30.5 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu1 [41.6 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:62 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.183-3 [164 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.3.4 [1049 kB] Get:75 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 10.2.1-6 [41.4 kB] Get:76 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.18-4 [87.5 kB] Get:77 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.31-12 [2814 kB] Get:78 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 10.2.1-6 [2065 kB] Get:79 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 10.2.1-6 [9008 B] Get:80 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.10.40-1 [1349 kB] Get:81 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:82 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.2-1 [74.0 kB] Get:83 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.18.3-5 [65.2 kB] Get:84 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.18.3-5 [114 kB] Get:85 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:86 http://mirror.einval.org/debian sid/main amd64 libssl1.1 amd64 1.1.1k-1 [1553 kB] Get:87 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.18.3-5 [363 kB] Get:88 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.18.3-5 [165 kB] Get:89 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.1-1 [83.6 kB] Get:90 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:91 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB] Get:92 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:93 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.31-12 [2346 kB] Get:94 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:95 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 10.2.1-6 [25.8 kB] Get:96 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 10.2.1-6 [828 kB] Get:97 http://mirror.einval.org/debian sid/main amd64 libtsan0 amd64 10.2.1-6 [2000 kB] Get:98 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 10.2.1-6 [493 kB] Get:99 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 10.2.1-6 [777 kB] Get:100 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:101 http://mirror.einval.org/debian sid/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB] Get:102 http://mirror.einval.org/debian sid/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 205 MB in 5s (43.9 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12271 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../001-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../003-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../005-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... 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Unpacking sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up linux-libc-dev-amd64-cross (5.10.13-1cross4) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up linux-libc-dev:amd64 (5.10.40-1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libyaml-perl (1.30-1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up gcc-10-base:amd64 (10.2.1-6) ... Setting up autotools-dev (20180224.1+nmu1) ... 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Setting up libc6-dev-amd64-cross (2.31-9cross4) ... Setting up libtsan0-amd64-cross (10.2.1-6cross1) ... Setting up cpp-10-x86-64-linux-gnu (10.2.1-6cross1) ... Setting up m4 (1.4.18-5) ... Setting up libgomp1-amd64-cross (10.2.1-6cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libitm1-amd64-cross (10.2.1-6cross1) ... Setting up libatomic1-amd64-cross (10.2.1-6cross1) ... Setting up libquadmath0-amd64-cross (10.2.1-6cross1) ... Setting up libubsan1-amd64-cross (10.2.1-6cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up cpp-x86-64-linux-gnu (4:10.2.1-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgcc-10-dev-amd64-cross (10.2.1-6cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-10-x86-64-linux-gnu (10.2.1-6cross1) ... Setting up libstdc++-10-dev-amd64-cross (10.2.1-6cross1) ... Setting up gcc-x86-64-linux-gnu (4:10.2.1-1) ... Setting up debhelper (13.3.4) ... Setting up g++-10-x86-64-linux-gnu (10.2.1-6cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-x86-64-linux-gnu (4:10.2.1-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu1) ... Setting up dpkg-cross (2.6.18+nmu1) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libcrypt1:amd64 (1:4.4.18-4) ... Setting up libgcc-s1:amd64 (10.2.1-6) ... Setting up libc6:amd64 (2.31-12) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4) ... Setting up libstdc++6:amd64 (10.2.1-6) ... Setting up liblsan0:amd64 (10.2.1-6) ... Setting up libitm1:amd64 (10.2.1-6) ... Setting up libtsan0:amd64 (10.2.1-6) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up libssl1.1:amd64 (1.1.1k-1) ... Setting up libcom-err2:amd64 (1.46.2-1) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libasan6:amd64 (10.2.1-6) ... Setting up libkrb5support0:amd64 (1.18.3-5) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libatomic1:amd64 (10.2.1-6) ... Setting up libk5crypto3:amd64 (1.18.3-5) ... Setting up libubsan1:amd64 (10.2.1-6) ... Setting up libkrb5-3:amd64 (1.18.3-5) ... Setting up libgcc-10-dev:amd64 (10.2.1-6) ... Setting up libgssapi-krb5-2:amd64 (1.18.3-5) ... Setting up libtirpc3:amd64 (1.3.1-1) ... Setting up libtirpc-dev:amd64 (1.3.1-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.31-12) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.31-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.35.2-2 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-12 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-amd64-cross_10.2.1-6cross1 libstdc++6_10.2.1-6 libstdc++6-amd64-cross_10.2.1-6cross1 linux-libc-dev_5.10.40-1 Package versions: adduser_3.118 apt_2.2.3 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.50 bash_5.1-3 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libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.40-1 linux-libc-dev-amd64-cross_5.10.13-1cross4 login_1:4.8.1-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4 perl-base_5.32.1-4 perl-modules-5.32_5.32.1-4 po-debconf_1.0.21+nmu1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.36.1-7 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: prank Binary: prank Architecture: any Version: 0.0.170427+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Manuel Prinz , Andreas Tille Homepage: http://wasabiapp.org/software/prank/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/prank Vcs-Git: https://salsa.debian.org/med-team/prank.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: prank deb science optional arch=any Checksums-Sha1: 48d122657e11779b3792ba0f71f6272fc5fabc4b 102244 prank_0.0.170427+dfsg.orig.tar.xz 9ea6f6b255dbf3588d729cbd3302b1bc957be5e6 10952 prank_0.0.170427+dfsg-3.debian.tar.xz Checksums-Sha256: 49d7483db8a83d3fb8085778203f3114e122e181cc19fb2234916d5d34b8cac6 102244 prank_0.0.170427+dfsg.orig.tar.xz 6b1ede7b2cd1269c50a56377ebbb3d5d51cc3923dca6d01e2f7b9ea9ee99d9a6 10952 prank_0.0.170427+dfsg-3.debian.tar.xz Files: 72cc8c3bf77d15f411e9709a45253cb3 102244 prank_0.0.170427+dfsg.orig.tar.xz f49d579c0767bf48386b332761813b4a 10952 prank_0.0.170427+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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14:38:12 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./prank_0.0.170427+dfsg-3.dsc dpkg-source: info: extracting prank in /<> dpkg-source: info: unpacking prank_0.0.170427+dfsg.orig.tar.xz dpkg-source: info: unpacking prank_0.0.170427+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix-gcc6.patch dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-4849ea7d-d36d-47a7-bdf6-e6b0b1778196 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package prank dpkg-buildpackage: info: source version 0.0.170427+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # No distclean! See README.source ( cd src ; make clean ) make[2]: Entering directory '/<>/src' rm -f writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o bppancestors.o rm -f *~ core *.core make[2]: Leaving directory '/<>/src' ( cd src ; rm -f prank prank.1 ) make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --verbose cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc make[2]: Entering directory '/<>/src' x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o writefile.o writefile.cpp In file included from ancestralnode.h:24, from writefile.h:25, from writefile.cpp:27: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o treenode.o treenode.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from treenode.cpp:25: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o translatesequences.o translatesequences.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from translatesequences.cpp:22: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o terminalsequence.o terminalsequence.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from terminalsequence.cpp:24: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o terminalnode.o terminalnode.cpp In file included from terminalnode.h:23, from terminalnode.cpp:22: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o site.o site.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from site.cpp:22: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o sequence.o sequence.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o readnewick.o readnewick.cpp In file included from readnewick.h:29, from readnewick.cpp:26: treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o readfile.o readfile.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o readalignment.o readalignment.cpp In file included from readalignment.h:28, from readalignment.cpp:23: treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o pwsite.o pwsite.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o pwhirschberg.o pwhirschberg.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from pwhirschberg.cpp:25: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o progressivealignment.o progressivealignment.cpp In file included from readnewick.h:29, from progressivealignment.cpp:28: treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o prank.o prank.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from progressivealignment.h:30, from prank.cpp:28: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o postprobability.o postprobability.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from postprobability.cpp:23: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o phylomatchscore.o phylomatchscore.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from phylomatchscore.cpp:23: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o node.o node.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o intmatrix.o intmatrix.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o hmmodel.o hmmodel.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from hmmodel.cpp:26: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o hirschberg.o hirschberg.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from hirschberg.cpp:25: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o guidetree.o guidetree.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from guidetree.cpp:25: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ guidetree.cpp: In member function ‘void GuideTree::computeTree(std::vector >*, std::vector >*, IntMatrix*)’: guidetree.cpp:162:37: warning: ‘%i’ directive writing between 1 and 10 bytes into a region of size between 6 and 15 [-Wformat-overflow=] 162 | sprintf(prop,"%i to %i",i,j); | ^~ guidetree.cpp:162:30: note: directive argument in the range [1, 2147483647] 162 | sprintf(prop,"%i to %i",i,j); | ^~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:867, from /usr/x86_64-linux-gnu/include/c++/10/cstdio:42, from guidetree.cpp:21: /usr/x86_64-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 25 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o fullprobability.o fullprobability.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from fullprobability.cpp:25: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o flmatrix.o flmatrix.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o eigen.o eigen.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o dbmatrix.o dbmatrix.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o characterprobability.o characterprobability.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from characterprobability.cpp:24: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o boolmatrix.o boolmatrix.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o ancestralsequence.o ancestralsequence.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from ancestralsequence.cpp:24: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o ancestralnode.o ancestralnode.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from ancestralnode.cpp:27: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ ancestralnode.cpp: In member function ‘std::string AncestralNode::getThisAncCharactersAt(int)’: ancestralnode.cpp:1517:1: warning: control reaches end of non-void function [-Wreturn-type] 1517 | } | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o check_version.o check_version.cpp x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o exonerate_reads.o exonerate_reads.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from exonerate_reads.cpp:10: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o mafft_alignment.o mafft_alignment.cpp In file included from ancestralnode.h:24, from hmmodel.h:36, from config.h:31, from mafft_alignment.cpp:6: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -pipe -O3 -I. -I/usr/include -o bppancestors.o bppancestors.cpp In file included from ancestralnode.h:24, from bppancestors.h:24, from bppancestors.cpp:29: ./treenode.h: In member function ‘virtual bool TreeNode::updateInsertionSite(int, bool)’: ./treenode.h:353:63: warning: no return statement in function returning non-void [-Wreturn-type] 353 | virtual bool updateInsertionSite(int i, bool has_parent) {} | ^ x86_64-linux-gnu-g++ -o prank writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o bppancestors.o -Wl,-z,relro -Wl,-z,now pod2man --utf8 --center "The Probabilistic Alignment Kit" -release="v.121211" --section=1 --name="PRANK" prank.1.pod >prank.1 make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install src/prank /usr/bin dh_installman src/prank.1 make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs VERSION_HISTORY make[1]: Leaving directory '/<>' dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -a -O--sourcedirectory=src dh_strip -a -a -O--sourcedirectory=src dh_makeshlibs -a -a -O--sourcedirectory=src dh_shlibdeps -a -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'prank' in '../prank_0.0.170427+dfsg-3_amd64.deb'. dpkg-deb: building package 'prank-dbgsym' in '../prank-dbgsym_0.0.170427+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../prank_0.0.170427+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-06-07T09:44:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ prank_0.0.170427+dfsg-3_amd64.changes: -------------------------------------- Format: 1.8 Date: Fri, 30 Oct 2020 15:25:58 +0100 Source: prank Binary: prank prank-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 0.0.170427+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: prank - Probabilistic Alignment Kit for DNA, codon and amino-acid sequenc Changes: prank (0.0.170427+dfsg-3) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Fix autopkgtest Checksums-Sha1: aede5533fe237ff857858649034adad4e5dc6abd 3851468 prank-dbgsym_0.0.170427+dfsg-3_amd64.deb 31a616a4bb2ecb5aa35c92231a905c3c487188e4 4844 prank_0.0.170427+dfsg-3_amd64.buildinfo 0518f308787dc1c5798f4c623c8ca687cdbff870 395312 prank_0.0.170427+dfsg-3_amd64.deb Checksums-Sha256: 62227a81c2aeffc1cdb1ef4c40c9eeedd112648e36c351a56acf1a3966d02d52 3851468 prank-dbgsym_0.0.170427+dfsg-3_amd64.deb 547ec656099408b163fb47f9ea42941f437afbb9547d7b5edcca1a76033c2b17 4844 prank_0.0.170427+dfsg-3_amd64.buildinfo 66aa51b751868a621991b204daf4a8b0720a993d6483057d5171b5e30b3870bb 395312 prank_0.0.170427+dfsg-3_amd64.deb Files: 98f3e219a2c99806a9aaae70b81b89eb 3851468 debug optional prank-dbgsym_0.0.170427+dfsg-3_amd64.deb eb2bbcda3a9483d74946b483653aaacf 4844 science optional prank_0.0.170427+dfsg-3_amd64.buildinfo 5d1330536ac8d924acb563d592c0cad1 395312 science optional prank_0.0.170427+dfsg-3_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: prank Binary: prank prank-dbgsym Architecture: amd64 Version: 0.0.170427+dfsg-3 Checksums-Md5: 98f3e219a2c99806a9aaae70b81b89eb 3851468 prank-dbgsym_0.0.170427+dfsg-3_amd64.deb 5d1330536ac8d924acb563d592c0cad1 395312 prank_0.0.170427+dfsg-3_amd64.deb Checksums-Sha1: aede5533fe237ff857858649034adad4e5dc6abd 3851468 prank-dbgsym_0.0.170427+dfsg-3_amd64.deb 0518f308787dc1c5798f4c623c8ca687cdbff870 395312 prank_0.0.170427+dfsg-3_amd64.deb Checksums-Sha256: 62227a81c2aeffc1cdb1ef4c40c9eeedd112648e36c351a56acf1a3966d02d52 3851468 prank-dbgsym_0.0.170427+dfsg-3_amd64.deb 66aa51b751868a621991b204daf4a8b0720a993d6483057d5171b5e30b3870bb 395312 prank_0.0.170427+dfsg-3_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Mon, 07 Jun 2021 09:44:39 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1), base-passwd (= 3.5.50), bash (= 5.1-3), binutils (= 2.35.2-2), binutils-aarch64-linux-gnu (= 2.35.2-2), binutils-common (= 2.35.2-2), bsdextrautils (= 2.36.1-7), bsdutils (= 1:2.36.1-7), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.76), debhelper (= 13.3.4), debianutils (= 4.11.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.2.1-6), gcc (= 4:10.2.1-1), gcc-10 (= 10.2.1-6), gcc-10-base (= 10.2.1-6), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-6), libatomic1 (= 10.2.1-6), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0-2), libaudit1 (= 1:3.0-2), libbinutils (= 2.35.2-2), libblkid1 (= 2.36.1-7), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-12), libc-dev-bin (= 2.31-12), libc6 (= 2.31-12), libc6-dev (= 2.31-12), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.1-6), libcom-err2 (= 1.46.2-1), libcrypt-dev (= 1:4.4.18-4), libcrypt1 (= 1:4.4.18-4), libctf-nobfd0 (= 2.35.2-2), libctf0 (= 2.35.2-2), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.259), libdebhelper-perl (= 13.3.4), libdpkg-perl (= 1.20.9), libelf1 (= 0.183-3), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 10.2.1-6), libgcrypt20 (= 1.8.7-6), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgmp10 (= 2:6.2.1+dfsg-1), libgomp1 (= 10.2.1-6), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-5), libicu67 (= 67.1-6), libisl23 (= 0.23-1), libitm1 (= 10.2.1-6), libk5crypto3 (= 1.18.3-5), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-5), libkrb5support0 (= 1.18.3-5), liblsan0 (= 10.2.1-6), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-7), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-7), libpam-modules-bin (= 1.4.0-7), libpam-runtime (= 1.4.0-7), libpam0g (= 1.4.0-7), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-4), libpipeline1 (= 1.5.3-1), libquadmath0 (= 10.2.1-6), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.36.1-7), libssl1.1 (= 1.1.1k-1), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 10.2.1-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.3-5), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-15), libtsan0 (= 10.2.1-6), libubsan1 (= 10.2.1-6), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-5), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-7), libxml2 (= 2.9.10+dfsg-6.7), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.40-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), patch (= 2.7.6-7), perl (= 5.32.1-4), perl-base (= 5.32.1-4), perl-modules-5.32 (= 5.32.1-4), po-debconf (= 1.0.21+nmu1), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7), tar (= 1.34+dfsg-1), util-linux (= 2.36.1-7), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1604067958" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ prank-dbgsym_0.0.170427+dfsg-3_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 3851468 bytes: control archive=544 bytes. 383 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: prank-dbgsym Source: prank Version: 0.0.170427+dfsg-3 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3973 Depends: prank (= 0.0.170427+dfsg-3) Section: debug Priority: optional Description: debug symbols for prank Build-Ids: e53f4bf9b9a40acad5ea7dd0e1829524191c33b0 drwxr-xr-x root/root 0 2020-10-30 14:25 ./ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/lib/debug/.build-id/e5/ -rw-r--r-- root/root 4057536 2020-10-30 14:25 ./usr/lib/debug/.build-id/e5/3f4bf9b9a40acad5ea7dd0e1829524191c33b0.debug drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/share/ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-10-30 14:25 ./usr/share/doc/prank-dbgsym -> prank prank_0.0.170427+dfsg-3_amd64.deb --------------------------------- new Debian package, version 2.0. size 395312 bytes: control archive=1536 bytes. 1910 bytes, 37 lines control 532 bytes, 8 lines md5sums Package: prank Version: 0.0.170427+dfsg-3 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1180 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9) Enhances: t-coffee Section: science Priority: optional Homepage: http://wasabiapp.org/software/prank/ Description: Probabilistic Alignment Kit for DNA, codon and amino-acid sequences PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences. . PRANK is a command-line program for UNIX-style environments but the same sequence alignment engine is implemented in the graphical program PRANKSTER. In addition to providing a user-friendly interface to those not familiar with Unix systems, PRANKSTER is an alignment browser for alignments saved in the HSAML format. The novel format allows for storing all the information generated by the aligner and the alignment browser is a convenient way to analyse and manipulate the data. . PRANK aims at an evolutionarily correct sequence alignment and often the result looks different from ones generated with other alignment methods. There are, however, cases where the different look is caused by violations of the method's assumptions. To understand why things may go wrong and how to avoid that, read this explanation of differences between PRANK and traditional progressive alignment methods. drwxr-xr-x root/root 0 2020-10-30 14:25 ./ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/bin/ -rwxr-xr-x root/root 1169808 2020-10-30 14:25 ./usr/bin/prank drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/share/ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/share/doc/prank/ -rw-r--r-- root/root 261 2020-10-30 14:25 ./usr/share/doc/prank/README.test -rw-r--r-- root/root 909 2020-10-30 14:25 ./usr/share/doc/prank/changelog.Debian.gz -rw-r--r-- root/root 1529 2017-07-03 07:05 ./usr/share/doc/prank/changelog.gz -rw-r--r-- root/root 1272 2020-10-30 14:25 ./usr/share/doc/prank/copyright drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/share/doc/prank/examples/ -rw-r--r-- root/root 16864 2020-10-30 14:25 ./usr/share/doc/prank/examples/sample.cdna.fasta -rw-r--r-- root/root 368 2020-10-30 14:25 ./usr/share/doc/prank/run-unit-test drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/share/man/ drwxr-xr-x root/root 0 2020-10-30 14:25 ./usr/share/man/man1/ -rw-r--r-- root/root 2932 2020-10-30 14:25 ./usr/share/man/man1/prank.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [533 B] Get:5 copy:/<>/apt_archive ./ Packages [621 B] Fetched 2117 B in 0s (48.2 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 7453 kB of archives. After this operation, 21.4 MB of additional disk space will be used. 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[21.0 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.004004-1 [59.9 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b1 [170 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.59-2+b1 [45.7 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B] Get:75 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.12-1+b1 [12.9 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.8-1+b1 [195 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libtype-tiny-perl all 1.012002-1 [351 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.08-1 [90.6 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.82+repack-1+b1 [34.5 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-3 [84.7 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7453 kB in 0s (39.1 MB/s) Selecting previously unselected package readline-common. (Reading database ... 18466 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../01-libreadline8_8.1-2_arm64.deb ... Unpacking libreadline8:arm64 (8.1-2) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../03-libassuan0_2.5.4-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.4-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.27-2_arm64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../05-libsqlite3-0_3.34.1-3_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.34.1-3) ... Selecting previously unselected package gpg. 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Setting up libsqlite3-0:arm64 (3.34.1-3) ... Setting up libyaml-libyaml-perl (0.82+repack-1+b1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:arm64 (2.5.4-1) ... Setting up libconfig-tiny-perl (2.26-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up lzip (1.22-3) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl (0.59-2+b1) ... Setting up libpath-tiny-perl (0.118-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1-2) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:arm64 (2.2.6-1) ... Setting up liburi-perl (5.08-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:arm64 (8.1-2) ... Setting up libtype-tiny-perl (1.012002-1) ... Setting up libtext-markdown-discount-perl:arm64 (0.12-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up gpgconf (2.2.27-2) ... Setting up gpg (2.2.27-2) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-12) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 79112 Build-Time: 244 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 61 Job: prank_0.0.170427+dfsg-3 Lintian: pass Machine Architecture: arm64 Package: prank Package-Time: 336 Source-Version: 0.0.170427+dfsg-3 Space: 79112 Status: successful Version: 0.0.170427+dfsg-3 -------------------------------------------------------------------------------- Finished at 2021-06-07T09:44:41Z Build needed 00:05:36, 79112k disk space