sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | primer3 2.4.0-2 (armel) Sat, 18 Apr 2020 02:53:36 +0000 | +==============================================================================+ Package: primer3 Version: 2.4.0-2 Source Version: 2.4.0-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-0cfc1e91-7c33-4af5-9d0b-f5bc7508d741' with '<>' I: NOTICE: Log filtering will replace 'build/primer3-jnUfwf/resolver-VRdrLd' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-17-1402.04.pdiff [34.3 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-17-2006.16.pdiff [28.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-17-1402.04.pdiff [31.7 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-17-2006.16.pdiff [93.3 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-17-2006.16.pdiff [28.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-17-2006.16.pdiff [93.3 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armel Packages [7936 kB] Fetched 8326 kB in 1s (5652 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1092 kB of archives. After this operation, 6144 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev amd64 5.5.17-1 [1092 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1092 kB in 0s (48.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_5.5.17-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.5.17-1) over (5.5.13-2) ... Setting up linux-libc-dev:amd64 (5.5.17-1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'primer3' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/primer3.git Please use: git clone https://salsa.debian.org/med-team/primer3.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 31.8 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main primer3 2.4.0-2 (dsc) [2117 B] Get:2 http://debian.oregonstate.edu/debian unstable/main primer3 2.4.0-2 (tar) [31.7 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main primer3 2.4.0-2 (diff) [12.1 kB] Fetched 31.8 MB in 1s (34.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/primer3-jnUfwf/primer3-2.4.0' with '<>' I: NOTICE: Log filtering will replace 'build/primer3-jnUfwf' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper (>= 11~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [404 B] Get:5 copy:/<>/apt_archive ./ Packages [490 B] Fetched 1851 B in 0s (69.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils build-essential cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-10-base:armel gcc-10-cross-base gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel glibc-doc manpages-dev:armel libstdc++-9-doc libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils build-essential cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-10-base:armel gcc-10-cross-base gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armel sensible-utils ucf 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 77.5 MB of archives. After this operation, 313 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [912 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main armel gcc-10-base armel 10-20200411-1 [196 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.3.0-10 [196 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.34-6 [2749 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-4 [2629 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-10 [1699 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-10 [10.7 MB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.3.0-8cross1 [197 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.3.0-8cross1 [6816 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-8cross1 [192 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10-20200411-1cross1 [192 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.30-2cross1 [1128 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armel-cross all 10-20200411-1cross1 [38.3 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 10-20200411-1cross1 [84.1 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 10-20200411-1cross1 [8828 B] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.3.0-8cross1 [340 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 10-20200411-1cross1 [368 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 10-20200411-1cross1 [114 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.3.0-8cross1 [644 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.3.0-8cross1 [7174 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.4.19-1cross1 [1155 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.30-2cross1 [2148 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.3.0-8cross1 [1712 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.3.0-8cross1 [7401 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13 [184 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.0-1 [14.8 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.2-1 [1343 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13 [1002 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armel libgcc-s1 armel 10-20200411-1 [38.3 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.16-1 [101 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.30-4 [2350 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.3.0-10 [347 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 10-20200411-1 [9020 B] Get:87 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.5.17-1 [1074 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libcrypt-dev armel 1:4.4.16-1 [120 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.30-4 [2189 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 10-20200411-1 [86.6 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 10-20200411-1 [408 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 10-20200411-1 [115 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.3.0-10 [645 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.3.0-10 [1742 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 77.5 MB in 1s (119 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... 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Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up linux-libc-dev-armel-cross (5.4.19-1cross1) ... Setting up gcc-9-arm-linux-gnueabi-base:amd64 (9.3.0-8cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:armel (10-20200411-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up cpp-9-arm-linux-gnueabi (9.3.0-8cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.3.0-8cross1) ... Setting up gcc-10-cross-base (10-20200411-1cross1) ... Setting up libc6-armel-cross (2.30-2cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-4) ... Setting up libc6-dev-armel-cross (2.30-2cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:armel (9.3.0-10) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libgomp1-armel-cross (10-20200411-1cross1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-10) ... Setting up libtool (2.4.6-14) ... Setting up libgcc-s1-armel-cross (10-20200411-1cross1) ... Setting up m4 (1.4.18-4) ... Setting up libstdc++6-armel-cross (10-20200411-1cross1) ... Setting up libatomic1-armel-cross (10-20200411-1cross1) ... Setting up libasan5-armel-cross (9.3.0-8cross1) ... Setting up cpp-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libubsan1-armel-cross (10-20200411-1cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.3.0-10) ... Setting up libgcc-9-dev-armel-cross (9.3.0-8cross1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libstdc++-9-dev-armel-cross (9.3.0-8cross1) ... Setting up gcc-9-arm-linux-gnueabi (9.3.0-8cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-9-arm-linux-gnueabi (9.3.0-8cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up po-debconf (1.0.21) ... Setting up g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.8) ... Setting up libcrypt1:armel (1:4.4.16-1) ... Setting up libgcc-s1:armel (10-20200411-1) ... Setting up libc6:armel (2.30-4) ... Setting up libcrypt-dev:armel (1:4.4.16-1) ... Setting up libc6-dev:armel (2.30-4) ... Setting up libstdc++6:armel (10-20200411-1) ... Setting up libgomp1:armel (10-20200411-1) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armel (9.3.0-10) ... Setting up libatomic1:armel (10-20200411-1) ... Setting up libubsan1:armel (10-20200411-1) ... Setting up debhelper (13) ... Setting up libgcc-9-dev:armel (9.3.0-10) ... Setting up libstdc++-9-dev:armel (9.3.0-10) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.30-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-6 dpkg-dev_1.19.7 g++-9_9.3.0-10 gcc-9_9.3.0-10 libc6-dev_2.30-4 libstdc++-9-dev_9.3.0-10 libstdc++-9-dev-armel-cross_9.3.0-8cross1 libstdc++6_10-20200411-1 libstdc++6-armel-cross_10-20200411-1cross1 linux-libc-dev_5.5.17-1 Package versions: adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-6 binutils-arm-linux-gnueabi_2.34-6 binutils-common_2.34-6 binutils-x86-64-linux-gnu_2.34-6 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-3 cpp-9_9.3.0-10 cpp-9-arm-linux-gnueabi_9.3.0-8cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armel_12.8 dash_0.5.10.2-7 debconf_1.5.73 debhelper_13 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-10 g++-9-arm-linux-gnueabi_9.3.0-8cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200411-1 gcc-10-cross-base_10-20200411-1cross1 gcc-8-base_8.4.0-3 gcc-9_9.3.0-10 gcc-9-arm-linux-gnueabi_9.3.0-8cross1 gcc-9-arm-linux-gnueabi-base_9.3.0-8cross1 gcc-9-base_9.3.0-10 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Source: primer3 Binary: primer3, primer3-examples Architecture: any all Version: 2.4.0-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://primer3.sourceforge.net Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/primer3 Vcs-Git: https://salsa.debian.org/med-team/primer3.git Testsuite: autopkgtest Testsuite-Triggers: valgrind Build-Depends: debhelper (>= 11~) Package-List: primer3 deb science optional arch=any primer3-examples deb science optional arch=all Checksums-Sha1: 7625922ff20d8f34d418933ac462b267cb39c0b5 31746780 primer3_2.4.0.orig.tar.gz 9d7f7874ef42796bd45181a610ad4d2d9193ef02 12060 primer3_2.4.0-2.debian.tar.xz Checksums-Sha256: 6d537640c86e2b4656ae77f75b6ad4478fd0ca43985a56cce531fb9fc0431c47 31746780 primer3_2.4.0.orig.tar.gz 96247e4223393e0056a8886209b1bb37abfa7dc7fb00eca4e3e695daf62dd71e 12060 primer3_2.4.0-2.debian.tar.xz Files: aed6546bdfb60652cd7eba8d51eae8cc 31746780 primer3_2.4.0.orig.tar.gz 94f8c7a3847e87211ecac64492ed834f 12060 primer3_2.4.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlsNiucOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtEi/w//SwZpT2U3eZJJi87BiAG1fh71WNh8qk7A7Wzj FqCTP47HtSyNIjLkr8iYWf5Hzo25IcLTiVAEdOJ/sDFBb+yQGky3WaFOhHil+5tS plr3y/v/wHih8QiducJfKcJIptRwjv1nVx2nhbNAFuT6Z00XBwfQdtUieMndKAh1 CQbKe5OcVDrrlm4/7Buu58JmTuM+V6M/Q4yuioBebodhi/tlavunEHdpt4U/rvbT C6BupdG8qampSb1Uo+os4lMpGSGnX1tEVnz6+Gv8fyqj/f2volFiI9arKdufepp9 Z8CA13Xkuv8ahbfQgZUbnsdR63zISgtMUlLdD/cnSwOvz0hL8/ZJvA1Vq/Krg+8u i8p0Q5BsFxqRCVBaIa0EgQ6RZoOH21rT3e3iSsjCu6n25gef1xyYRml8RBVO99Sh tYGBufidvWDlAT0eT4ubymfXr0lNr/FS8gH9+8vi+zcmPMHP1iFXbQpC6gM/X7Zr mgjgbnZy8yoMBbhfb6t+FuTMcoJ/O2inLiis+V95q/C49yhmpsojnSs+FfJGNLhg s/ROZzW7rsXz9YyAxBttuEidaUfQayl585Z6whCmbfNKpPIPBxEClXewUuZhcjyP tRGtS1IGy0TzFibWjmDyp39GO7W+YJUqKt+aKexqFWF059wp+SFW/G2RNNO0tl/0 O6/2cqs= =mo71 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue May 29 17:16:23 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./primer3_2.4.0-2.dsc dpkg-source: info: extracting primer3 in /<> dpkg-source: info: unpacking primer3_2.4.0.orig.tar.gz dpkg-source: info: unpacking primer3_2.4.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying primer_thermodynamic_parameters_path_2_etc.patch dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying p3test_fix_exit_status.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-0cfc1e91-7c33-4af5-9d0b-f5bc7508d741 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package primer3 dpkg-buildpackage: info: source version 2.4.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Liubov Chuprikova dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j1 clean make[1]: Entering directory '/<>/src' rm -f *.o primer3_core ntdpal ntthal oligotm long_seq_tm_test primer3_masker *~ libprimer3.a libdpal.a libthal.a liboligotm.a libmasker.a libprimer3.so.1.0.0 libdpal.a.so.1.0.0 libthal.a.so.1.0.0 liboligotm.so.1.2.0 libmasker.a.so.1.0.0 example.for example.rev example.int core ../*~ cd ../test/; make clean make[2]: Entering directory '/<>/test' echo; echo; echo 'CLEAN UP TEST DIRECTORIES'; echo; echo; CLEAN UP TEST DIRECTORIES rm -rf primer_list_tmp/* rm -rf primer1_list_tmp/* rm -rf primer1_th_list_tmp/* rm -rf th-w-other-tasks_list_tmp/* rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak rm -f *.tmp *.bak *.tmp.err *~ rm -f hyb_probe_only.for hyb_probe_only.int rm -f right_only.for right_only.rev left_only.for rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for rm -f pcr_primers.rev pcr_primers.for rm -f pick_primer_list_and_file_flag_th_[1-4].for pick_primer_list_and_file_flag_th_[1-4].rev rm -f pick_primer_list_and_file_flag_th_[1-4].int rm -f syntax[0-1][0-9].for syntax[0-1][0-9].int syntax[0-1][0-9].rev rm -f oligotm.*.valg # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg # valgrind output from thal_test.pl --valgrind rm -f masker.*.valg # valgrind output from thal_test.pl --valgrind rm -f oligotm.*.valg.* # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg.* # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg.* # valgrind output from thal_test.pl --valgrind rm -f masker.*.valg.* # valgrind output from masker_test.pl --valgrind rm -f *.vg */*.vg # valgrind output from p3test{,z}.pl --valgrind rm -f *.vg.core.* # core files from crashed valgrind test rm -f ./core # in case we crashed and left a core file make[2]: Leaving directory '/<>/test' make[1]: Leaving directory '/<>/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- 'CPP=$(CXX)' cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc CPP=\$\(CXX\) make[2]: Entering directory '/<>/src' arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 primer3_boulder_main.c arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o format_output.o format_output.c arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o read_boulder.o read_boulder.c arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o print_boulder.o print_boulder.c arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 masker.c arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -Wno-deprecated -o libprimer3.o libprimer3.c arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o p3_seq_lib.o p3_seq_lib.c ar rv libprimer3.a libprimer3.o p3_seq_lib.o ar: creating libprimer3.a a - libprimer3.o a - p3_seq_lib.o ranlib libprimer3.a arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o dpal_primer.o dpal.c dpal.c: In function ‘void print_align(const unsigned char*, const unsigned char*, int (*)[1600][3], int, int, const dpal_args*)’: dpal.c:1036:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1036 | for(i=j;i>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -ffloat-store -o thal_primer.o thal.c thal.c: In function ‘void tableStartATS(double, double (*)[5])’: thal.c:1200:4: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1200 | for (i = 0; i < 5; ++i) | ^~~ thal.c:1203:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1203 | atpS[0][3] = atpS[3][0] = atp_value; | ^~~~ thal.c: In function ‘void tableStartATH(double, double (*)[5])’: thal.c:1212:4: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1212 | for (i = 0; i < 5; ++i) | ^~~ thal.c:1216:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1216 | atpH[0][3] = atpH[3][0] = atp_value; | ^~~~ ar rv libthal.a thal_primer.o ar: creating libthal.a a - thal_primer.o ranlib libthal.a arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oligotm.o oligotm.c oligotm.c: In function ‘oligotm’: oligotm.c:424:44: warning: comparison between pointer and zero character constant [-Wpointer-compare] 424 | for(i = 0; i <= len && d != NULL && d != '\0';) { | ^~ oligotm.c:424:42: note: did you mean to dereference the pointer? 424 | for(i = 0; i <= len && d != NULL && d != '\0';) { | ^ ar rv liboligotm.a oligotm.o ar: creating liboligotm.a a - oligotm.o ranlib liboligotm.a ar rv libmasker.a masker.o ar: creating libmasker.a a - masker.o ranlib libmasker.a arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -g -o primer3_core primer3_boulder_main.o format_output.o read_boulder.o print_boulder.o masker.o libprimer3.a libdpal.a libthal.a liboligotm.a libmasker.a -lm arm-linux-gnueabi-g++ -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -o ntdpal_main.o ntdpal_main.c arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o dpal.o dpal.c dpal.c: In function ‘void print_align(const unsigned char*, const unsigned char*, int (*)[1600][3], int, int, const dpal_args*)’: dpal.c:1036:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1036 | for(i=j;i>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o thal_main.o thal_main.c arm-linux-gnueabi-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -ffloat-store -o thal.o thal.c thal.c: In function ‘void tableStartATS(double, double (*)[5])’: thal.c:1200:4: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1200 | for (i = 0; i < 5; ++i) | ^~~ thal.c:1203:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1203 | atpS[0][3] = atpS[3][0] = atp_value; | ^~~~ thal.c: In function ‘void tableStartATH(double, double (*)[5])’: thal.c:1212:4: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1212 | for (i = 0; i < 5; ++i) | ^~~ thal.c:1216:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1216 | atpH[0][3] = atpH[3][0] = atp_value; | ^~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -g -o ntthal thal_main.o thal.o -lm arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -Wl,-z,relro -Wl,-z,now -g -o oligotm oligotm_main.c liboligotm.a -lm arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o long_seq_tm_test long_seq_tm_test_main.c oligotm.o -lm arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -o primer3_masker masker_main.c libprimer3.a libdpal.a libthal.a liboligotm.a libmasker.a -lm make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test --sourcedirectory=test dh clean --sourcedirectory=test dh_auto_clean -O--sourcedirectory=test cd test && make -j1 clean make[2]: Entering directory '/<>/test' echo; echo; echo 'CLEAN UP TEST DIRECTORIES'; echo; echo; CLEAN UP TEST DIRECTORIES rm -rf primer_list_tmp/* rm -rf primer1_list_tmp/* rm -rf primer1_th_list_tmp/* rm -rf th-w-other-tasks_list_tmp/* rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak rm -f *.tmp *.bak *.tmp.err *~ rm -f hyb_probe_only.for hyb_probe_only.int rm -f right_only.for right_only.rev left_only.for rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for rm -f pcr_primers.rev pcr_primers.for rm -f pick_primer_list_and_file_flag_th_[1-4].for pick_primer_list_and_file_flag_th_[1-4].rev rm -f pick_primer_list_and_file_flag_th_[1-4].int rm -f syntax[0-1][0-9].for syntax[0-1][0-9].int syntax[0-1][0-9].rev rm -f oligotm.*.valg # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg # valgrind output from thal_test.pl --valgrind rm -f masker.*.valg # valgrind output from thal_test.pl --valgrind rm -f oligotm.*.valg.* # valgrind output from oligotm_test.pl --valgrind rm -f ntdpal.*.valg.* # valgrind output from dpal_test.pl --valgrind rm -f ntthal.*.valg.* # valgrind output from thal_test.pl --valgrind rm -f masker.*.valg.* # valgrind output from masker_test.pl --valgrind rm -f *.vg */*.vg # valgrind output from p3test{,z}.pl --valgrind rm -f *.vg.core.* # core files from crashed valgrind test rm -f ./core # in case we crashed and left a core file make[2]: Leaving directory '/<>/test' dh_autoreconf_clean -O--sourcedirectory=test dh_clean -O--sourcedirectory=test make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src dh_install -a -O--sourcedirectory=src dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples mkdir -p /<>/debian/primer3-examples/usr/share/doc/primer3/examples/test; mkdir -p /<>/debian/primer3-examples/usr/share/doc/primer3/examples/src; mkdir -p /<>/debian/primer3-examples/usr/share/doc/primer3/examples/settings_files; mkdir -p /<>/debian/primer3-examples/usr/share/doc/primer3/examples/kmer_lists; cp -aR ./test/* /<>/debian/primer3-examples/usr/share/doc/primer3/examples/test; cp -aR ./src/humrep_and_simple.txt /<>/debian/primer3-examples/usr/share/doc/primer3/examples/src; cp -a settings_files/primer*.txt /<>/debian/primer3-examples/usr/share/doc/primer3/examples/settings_files; cp -aR ./kmer_lists/*.list /<>/debian/primer3-examples/usr/share/doc/primer3/examples/kmer_lists; chmod -x /<>/debian/primer3-examples/usr/share/doc/primer3/examples/test/thal*; sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' /<>/debian/primer3-examples/usr/share/doc/primer3/examples/test/long_seq_tm_test.pl ; sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' /<>/debian/primer3-examples/usr/share/doc/primer3/examples/test/vgrep.pl ; make[1]: Leaving directory '/<>' dh_installman -a -O--sourcedirectory=src dh_installinit -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dpkg-shlibdeps: warning: debian/primer3/usr/bin/primer3_core contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'primer3' in '../primer3_2.4.0-2_armel.deb'. dpkg-deb: building package 'primer3-dbgsym' in '../primer3-dbgsym_2.4.0-2_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../primer3_2.4.0-2_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-18T02:54:32Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ primer3_2.4.0-2_armel.changes: ------------------------------ Format: 1.8 Date: Mon, 28 May 2018 13:44:30 +0000 Source: primer3 Binary: primer3 primer3-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 2.4.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Liubov Chuprikova Description: primer3 - tool to design flanking oligo nucleotides for DNA amplification Closes: 890993 Changes: primer3 (2.4.0-2) unstable; urgency=medium . [ Liubov Chuprikova ] * Team upload. * Skip tests that fail on big endian Closes: #890993 * Added d/README.source with explanation why some tests are skipped * debian/patches/p3test_fix_exit_status.patch: Fix test to show correct exit status . [ Andreas Tille ] * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 Checksums-Sha1: cd4e5744b454c6afce1d5bce320c80e8b206a2e2 411280 primer3-dbgsym_2.4.0-2_armel.deb df0fb7fe48407cf1603f1bde3d54cac95716ed34 4676 primer3_2.4.0-2_armel.buildinfo 7766fedb4b5e0fc8a55aa913937d5e647b4f33b5 171252 primer3_2.4.0-2_armel.deb Checksums-Sha256: 7052184dcc77bd6033f12bb39688c69d816a6c57b3a8639ff3ecb776f05cebb2 411280 primer3-dbgsym_2.4.0-2_armel.deb bf17bfb1382bc080be0397c647f44e6eb92d070f20be0051ba50b60bffe32ec7 4676 primer3_2.4.0-2_armel.buildinfo 562f3371e0a8d6cdb97819a95ebdfe47ad8194b712513231e2baf5e4e49c5c2b 171252 primer3_2.4.0-2_armel.deb Files: d7cf714812bed713301f8ccbdf546527 411280 debug optional primer3-dbgsym_2.4.0-2_armel.deb 1b16f464c6d9f0ffae1dcbab26b147ab 4676 science optional primer3_2.4.0-2_armel.buildinfo 22cfd860bc0bf2d984a3692718ebf952 171252 science optional primer3_2.4.0-2_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: primer3 Binary: primer3 primer3-examples Architecture: armel Version: 2.4.0-2 Checksums-Md5: d7cf714812bed713301f8ccbdf546527 411280 primer3-dbgsym_2.4.0-2_armel.deb 22cfd860bc0bf2d984a3692718ebf952 171252 primer3_2.4.0-2_armel.deb Checksums-Sha1: cd4e5744b454c6afce1d5bce320c80e8b206a2e2 411280 primer3-dbgsym_2.4.0-2_armel.deb 7766fedb4b5e0fc8a55aa913937d5e647b4f33b5 171252 primer3_2.4.0-2_armel.deb Checksums-Sha256: 7052184dcc77bd6033f12bb39688c69d816a6c57b3a8639ff3ecb776f05cebb2 411280 primer3-dbgsym_2.4.0-2_armel.deb 562f3371e0a8d6cdb97819a95ebdfe47ad8194b712513231e2baf5e4e49c5c2b 171252 primer3_2.4.0-2_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 18 Apr 2020 02:54:32 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-6), binutils-common (= 2.34-6), binutils-x86-64-linux-gnu (= 2.34-6), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-10), dash (= 0.5.10.2-7), debconf (= 1.5.73), debhelper (= 13), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-10), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200411-1), gcc-9 (= 9.3.0-10), gcc-9-base (= 9.3.0-10), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-10), libatomic1 (= 10-20200411-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34-6), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.30-4), libc-dev-bin (= 2.30-4), libc6 (= 2.30-4), libc6-dev (= 2.30-4), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10-20200411-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34-6), libctf0 (= 2.34-6), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 13), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.0-1), libgcc-9-dev (= 9.3.0-10), libgcc-s1 (= 10-20200411-1), libgcc1 (= 1:10-20200411-1), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.2-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200411-1), libgpg-error0 (= 1.37-1), libicu63 (= 63.2-3), libisl22 (= 0.22.1-1), libitm1 (= 10-20200411-1), liblsan0 (= 10-20200411-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libncursesw6 (= 6.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10-20200411-1), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.0-1+b3), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.3.0-10), libstdc++6 (= 10-20200411-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.4-4), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10-20200411-1), libubsan1 (= 10-20200411-1), libuchardet0 (= 0.0.6-3), libudev1 (= 245.4-4), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.10+dfsg-5), linux-libc-dev (= 5.5.17-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1527515070" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ primer3-dbgsym_2.4.0-2_armel.deb -------------------------------- new Debian package, version 2.0. size 411280 bytes: control archive=700 bytes. 493 bytes, 12 lines control 424 bytes, 4 lines md5sums Package: primer3-dbgsym Source: primer3 Version: 2.4.0-2 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 465 Depends: primer3 (= 2.4.0-2) Section: debug Priority: optional Description: debug symbols for primer3 Build-Ids: 34f521ceac8a488919770d5d8a9e5f54ce67e066 c53d6f1a0680e6a386fe8b3515472c3de3178443 d490d82a4b83466ec22d7878f0db8eb184c9ffe1 e479f1494b965d8671c4f8c8666d08bbfb8bd153 drwxr-xr-x root/root 0 2018-05-28 13:44 ./ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/lib/debug/.build-id/34/ -rw-r--r-- root/root 71572 2018-05-28 13:44 ./usr/lib/debug/.build-id/34/f521ceac8a488919770d5d8a9e5f54ce67e066.debug drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/lib/debug/.build-id/c5/ -rw-r--r-- root/root 25764 2018-05-28 13:44 ./usr/lib/debug/.build-id/c5/3d6f1a0680e6a386fe8b3515472c3de3178443.debug drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/lib/debug/.build-id/d4/ -rw-r--r-- root/root 346136 2018-05-28 13:44 ./usr/lib/debug/.build-id/d4/90d82a4b83466ec22d7878f0db8eb184c9ffe1.debug drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/lib/debug/.build-id/e4/ -rw-r--r-- root/root 17248 2018-05-28 13:44 ./usr/lib/debug/.build-id/e4/79f1494b965d8671c4f8c8666d08bbfb8bd153.debug drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/share/ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-05-28 13:44 ./usr/share/doc/primer3-dbgsym -> primer3 primer3_2.4.0-2_armel.deb ------------------------- new Debian package, version 2.0. size 171252 bytes: control archive=1436 bytes. 1387 bytes, 34 lines conffiles 858 bytes, 18 lines control 973 bytes, 15 lines md5sums Package: primer3 Version: 2.4.0-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 671 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 5) Suggests: ncbi-epcr Enhances: emboss Section: science Priority: optional Homepage: http://primer3.sourceforge.net Description: tool to design flanking oligo nucleotides for DNA amplification Primer3 picks primers for Polymerase Chain Reactions (PCRs), considering as criteria oligonucleotide melting temperature, size, GC content and primer-dimer possibilities, PCR product size, positional constraints within the source sequence, and miscellaneous other constraints. All of these criteria are user-specifiable as constraints, and some are specifiable as terms in an objective function that characterizes an optimal primer pair. drwxr-xr-x root/root 0 2018-05-28 13:44 ./ drwxr-xr-x root/root 0 2018-05-28 13:44 ./etc/ drwxr-xr-x root/root 0 2017-11-03 16:29 ./etc/primer3_config/ -rw-r--r-- root/root 373 2017-11-03 16:29 ./etc/primer3_config/dangle.dh -rw-r--r-- root/root 548 2017-11-03 16:29 ./etc/primer3_config/dangle.ds drwxr-xr-x root/root 0 2017-11-03 16:29 ./etc/primer3_config/interpretations/ -rw-r--r-- root/root 994 2017-11-03 16:29 ./etc/primer3_config/interpretations/dangle_i.dh -rw-r--r-- root/root 1017 2017-11-03 16:29 ./etc/primer3_config/interpretations/dangle_i.ds -rw-r--r-- root/root 1856 2017-11-03 16:29 ./etc/primer3_config/interpretations/loops_i.dh -rw-r--r-- root/root 699 2017-11-03 16:29 ./etc/primer3_config/interpretations/loops_i.ds -rw-r--r-- root/root 2667 2017-11-03 16:29 ./etc/primer3_config/interpretations/stack_i.dh -rw-r--r-- root/root 2592 2017-11-03 16:29 ./etc/primer3_config/interpretations/stack_i.ds -rw-r--r-- root/root 2751 2017-11-03 16:29 ./etc/primer3_config/interpretations/stackmm_i_mm.dh -rw-r--r-- root/root 2643 2017-11-03 16:29 ./etc/primer3_config/interpretations/stackmm_i_mm.ds -rw-r--r-- root/root 815 2017-11-03 16:29 ./etc/primer3_config/interpretations/tetraloop_i.dh -rw-r--r-- root/root 873 2017-11-03 16:29 ./etc/primer3_config/interpretations/tetraloop_i.ds -rw-r--r-- root/root 194 2017-11-03 16:29 ./etc/primer3_config/interpretations/triloop_i.dh -rw-r--r-- root/root 160 2017-11-03 16:29 ./etc/primer3_config/interpretations/triloop_i.ds -rw-r--r-- root/root 2486 2017-11-03 16:29 ./etc/primer3_config/interpretations/tstack2_i.dh -rw-r--r-- root/root 2720 2017-11-03 16:29 ./etc/primer3_config/interpretations/tstack2_i.ds -rw-r--r-- root/root 2135 2017-11-03 16:29 ./etc/primer3_config/interpretations/tstack_i.dh -rw-r--r-- root/root 2463 2017-11-03 16:29 ./etc/primer3_config/interpretations/tstack_i.ds -rw-r--r-- root/root 2135 2017-11-03 16:29 ./etc/primer3_config/interpretations/tstack_tm_inf_i.dh -rw-r--r-- root/root 2494 2017-11-03 16:29 ./etc/primer3_config/interpretations/tstack_tm_inf_i.ds -rw-r--r-- root/root 441 2017-11-03 16:29 ./etc/primer3_config/loops.dh -rw-r--r-- root/root 692 2017-11-03 16:29 ./etc/primer3_config/loops.ds -rw-r--r-- root/root 1057 2017-11-03 16:29 ./etc/primer3_config/stack.dh -rw-r--r-- root/root 1056 2017-11-03 16:29 ./etc/primer3_config/stack.ds -rw-r--r-- root/root 1144 2017-11-03 16:29 ./etc/primer3_config/stackmm.dh -rw-r--r-- root/root 1109 2017-11-03 16:29 ./etc/primer3_config/stackmm.ds -rw-r--r-- root/root 913 2017-11-03 16:29 ./etc/primer3_config/tetraloop.dh -rw-r--r-- root/root 824 2017-11-03 16:29 ./etc/primer3_config/tetraloop.ds -rw-r--r-- root/root 192 2017-11-03 16:29 ./etc/primer3_config/triloop.dh -rw-r--r-- root/root 128 2017-11-03 16:29 ./etc/primer3_config/triloop.ds -rw-r--r-- root/root 890 2017-11-03 16:29 ./etc/primer3_config/tstack.dh -rw-r--r-- root/root 950 2017-11-03 16:29 ./etc/primer3_config/tstack2.dh -rw-r--r-- root/root 1184 2017-11-03 16:29 ./etc/primer3_config/tstack2.ds -rw-r--r-- root/root 1152 2017-11-03 16:29 ./etc/primer3_config/tstack_tm_inf.ds drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/bin/ -rwxr-xr-x root/root 21968 2018-05-28 13:44 ./usr/bin/ntdpal -rwxr-xr-x root/root 75216 2018-05-28 13:44 ./usr/bin/ntthal -rwxr-xr-x root/root 17820 2018-05-28 13:44 ./usr/bin/oligotm -rwxr-xr-x root/root 259548 2018-05-28 13:44 ./usr/bin/primer3_core drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/share/ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/share/doc-base/ -rw-r--r-- root/root 660 2018-05-28 13:44 ./usr/share/doc-base/primer3-manual drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/share/doc/primer3/ -rw-r--r-- root/root 306 2018-05-28 13:44 ./usr/share/doc/primer3/README.test -rw-r--r-- root/root 3130 2018-05-28 13:44 ./usr/share/doc/primer3/changelog.Debian.gz -rw-r--r-- root/root 2516 2018-05-28 13:44 ./usr/share/doc/primer3/copyright drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/share/doc/primer3/examples/ -rw-r--r-- root/root 368 2017-11-03 16:29 ./usr/share/doc/primer3/examples/example -rw-r--r-- root/root 203514 2018-05-28 13:44 ./usr/share/doc/primer3/primer3_manual.htm -rw-r--r-- root/root 10180 2018-05-28 13:44 ./usr/share/doc/primer3/release_notes.txt.gz drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-28 13:44 ./usr/share/man/man1/ -rw-r--r-- root/root 1858 2018-05-28 13:44 ./usr/share/man/man1/ntdpal.1.gz -rw-r--r-- root/root 824 2018-05-28 13:44 ./usr/share/man/man1/ntthal.1.gz -rw-r--r-- root/root 1710 2018-05-28 13:44 ./usr/share/man/man1/oligotm.1.gz -rw-r--r-- root/root 1674 2018-05-28 13:44 ./usr/share/man/man1/primer3_core.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [531 B] Get:5 copy:/<>/apt_archive ./ Packages [619 B] Fetched 2113 B in 0s (80.3 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armel t1utils 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 9365 kB of archives. After this operation, 26.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-5 [661 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 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libemail-valid-perl all 1.202-1 [23.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.44-1 [83.5 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-5 [105 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004000-1 [12.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.011+ds-1 [106 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.011+ds-1 [108 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010001-1 [338 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [35.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.65.0 [1295 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9365 kB in 0s (47.7 MB/s) Selecting previously unselected package readline-common. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.31.1-5_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.31.1-5) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.20-1_amd64.deb ... Unpacking gpg (2.2.20-1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b3_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b3) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b2_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../10-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../11-libdevel-callchecker-perl_0.008-1+b1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b1) ... 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Setting up libfuture-perl (0.44-1) ... Setting up libyaml-libyaml-perl (0.81+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (4) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libsereal-encoder-perl (4.011+ds-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libio-async-perl (0.75-1) ... Setting up patchutils (0.3.4-2+b1) ... Setting up libjson-maybexs-perl (1.004000-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up t1utils (1.41-4) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libipc-run-perl (20180523.0-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3200-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (6.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b3) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-4) ... Setting up libsereal-decoder-perl (4.011+ds-1) ... Setting up liburi-perl (1.76-2) ... Setting up libnet-ssleay-perl (1.88-3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtype-tiny-perl (1.010001-1) ... Setting up libnet-dns-perl (1.23-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-5) ... Setting up gpgconf (2.2.20-1) ... Setting up libio-socket-ssl-perl (2.067-1) ... Setting up gpg (2.2.20-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004000-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.65.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.30-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 274348 Build-Time: 26 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 17 Job: primer3_2.4.0-2 Lintian: pass Machine Architecture: amd64 Package: primer3 Package-Time: 56 Source-Version: 2.4.0-2 Space: 274348 Status: successful Version: 2.4.0-2 -------------------------------------------------------------------------------- Finished at 2020-04-18T02:54:32Z Build needed 00:00:56, 274348k disk space