sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | probabel 0.5.0+dfsg-6 (amd64) Sat, 26 Aug 2023 04:01:31 +0000 | +==============================================================================+ Package: probabel Version: 0.5.0+dfsg-6 Source Version: 0.5.0+dfsg-6 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.zFVoW93kxF... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/probabel-zjqN51/resolver-OfcbBV' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [210 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.2 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9436 kB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [9568 kB] Fetched 29.4 MB in 8s (3800 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils grep libblkid1 libmount1 libpcre2-8-0 libperl5.36 libsmartcols1 libsystemd0 libudev1 libuuid1 mawk perl perl-base perl-modules-5.36 util-linux 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.5 MB of archives. After this operation, 49.2 kB disk space will be freed. Get:1 http://mirror.einval.org/debian unstable/main arm64 bsdutils arm64 1:2.39.2-1 [96.4 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 grep arm64 3.11-3 [422 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libperl5.36 arm64 5.36.0-8 [4016 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 perl arm64 5.36.0-8 [239 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 perl-base arm64 5.36.0-8 [1468 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 perl-modules-5.36 all 5.36.0-8 [2816 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 util-linux arm64 2.39.2-1 [1195 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libblkid1 arm64 2.39.2-1 [153 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libmount1 arm64 2.39.2-1 [181 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libpcre2-8-0 arm64 10.42-3 [231 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libsmartcols1 arm64 2.39.2-1 [113 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libsystemd0 arm64 254.1-3 [328 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libudev1 arm64 254.1-3 [112 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libuuid1 arm64 2.39.2-1 [28.8 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 mawk arm64 1.3.4.20230808-1 [127 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.5 MB in 0s (77.0 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.37-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'probabel' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probabel.git Please use: git clone https://salsa.debian.org/med-team/probabel.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1785 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main probabel 0.5.0+dfsg-6 (dsc) [2338 B] Get:2 http://mirror.einval.org/debian unstable/main probabel 0.5.0+dfsg-6 (tar) [1774 kB] Get:3 http://mirror.einval.org/debian unstable/main probabel 0.5.0+dfsg-6 (diff) [7944 B] Fetched 1785 kB in 0s (22.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/probabel-zjqN51/probabel-0.5.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/probabel-zjqN51' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libeigen3-dev, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, debhelper, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), libeigen3-dev, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, debhelper, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [863 B] Get:5 copy:/<>/apt_archive ./ Packages [878 B] Fetched 2350 B in 0s (133 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file fontconfig-config fonts-lmodern fonts-noto-core fonts-noto-mono g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libapache-pom-java libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libbsd0 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcairo2 libcom-err2:amd64 libcommons-logging-java libcommons-parent-java libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libeigen3-dev libelf1 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontbox-java libfontconfig1 libfreetype6 libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0 libgomp1:amd64 libgomp1-amd64-cross libgraphite2-3 libgssapi-krb5-2:amd64 libharfbuzz0b libhwasan0:amd64 libhwasan0-amd64-cross libice6 libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkpathsea6 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libncursesw6 libnsl-dev:amd64 libnsl2:amd64 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpkgconf3 libpng16-16 libptexenc1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 libsm6 libsqlite3-0 libssl3:amd64 libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libzzip-0-13 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db media-types pkg-config pkgconf pkgconf-bin po-debconf preview-latex-style python3 python3-minimal python3.11 python3.11-minimal readline-common sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tzdata ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch g++-13-multilib-x86-64-linux-gnu gcc-13-doc gcc-13-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java libeigen3-doc libmpfrc++-dev low-memory-monitor krb5-doc:amd64 krb5-user:amd64 libstdc++-13-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support readline-doc ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex python3-pygments icc-profiles texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:amd64 libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl ca-certificates lmodern dvisvgm tex-gyre tipa default-jre libspreadsheet-parseexcel-perl texlive-plain-generic ruby tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file fontconfig-config fonts-lmodern fonts-noto-core fonts-noto-mono g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libapache-pom-java libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libbsd0 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcairo2 libcom-err2:amd64 libcommons-logging-java libcommons-parent-java libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libeigen3-dev libelf1 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontbox-java libfontconfig1 libfreetype6 libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0 libgomp1:amd64 libgomp1-amd64-cross libgraphite2-3 libgssapi-krb5-2:amd64 libharfbuzz0b libhwasan0:amd64 libhwasan0-amd64-cross libice6 libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkpathsea6 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libncursesw6 libnsl-dev:amd64 libnsl2:amd64 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpkgconf3 libpng16-16 libptexenc1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 libsm6 libsqlite3-0 libssl3:amd64 libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libzzip-0-13 linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db media-types pkg-config pkgconf pkgconf-bin po-debconf preview-latex-style python3 python3-minimal python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:amd64 sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tzdata ucf x11-common xdg-utils 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 223 MB of archives. After this operation, 843 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [956 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libpython3.11-minimal arm64 3.11.5-1 [808 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.5.0-2 [84.8 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 python3.11-minimal arm64 3.11.5-1 [1843 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 python3-minimal arm64 3.11.4-5+b1 [26.5 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 tzdata all 2023c-10 [252 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.4+20230625-2 [122 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.42.0-1 [803 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libpython3.11-stdlib arm64 3.11.5-1 [1755 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 python3.11 arm64 3.11.5-1 [582 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libpython3-stdlib arm64 3.11.4-5+b1 [9480 B] Get:16 http://mirror.einval.org/debian unstable/main arm64 python3 arm64 3.11.4-5+b1 [26.4 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.20 [19.3 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.44-3 [42.5 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-13 [159 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-2 [1122 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.39.2-1 [89.1 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.11.2-3 [1368 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-3 [276 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-13 [496 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu-base arm64 13.2.0-2cross1 [39.6 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 cpp-13-x86-64-linux-gnu arm64 13.2.0-2cross1 [9274 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:13.2.0-1 [4116 B] Get:36 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.41-4 [2384 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-2cross1 [35.2 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 13.2.0-2cross1 [57.7 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 13.2.0-2cross1 [128 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 13.2.0-2cross1 [25.5 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 13.2.0-2cross1 [8988 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 13.2.0-2cross1 [2552 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 13.2.0-2cross1 [1101 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 13.2.0-2cross1 [2326 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.37-3cross1 [1477 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 13.2.0-2cross1 [648 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 13.2.0-2cross1 [1009 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 13.2.0-2cross1 [1153 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 13.2.0-2cross1 [145 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-amd64-cross all 13.2.0-2cross1 [2542 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu arm64 13.2.0-2cross1 [18.3 MB] Get:53 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:13.2.0-1 [1472 B] Get:54 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.3.7-1cross1 [1917 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.37-3cross1 [1897 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-amd64-cross all 13.2.0-2cross1 [2201 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 g++-13-x86-64-linux-gnu arm64 13.2.0-2cross1 [10.1 MB] Get:58 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:13.2.0-1 [1176 B] Get:59 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3 [618 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.30-2 [63.4 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.10 [3488 B] Get:75 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.5 [81.8 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get:80 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:82 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.189-4 [173 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-13 [1248 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.5 [952 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.32.1-1 [27.9 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.32.1-1 [66.3 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 fonts-noto-mono all 20201225-2 [398 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 fonts-noto-core all 20201225-2 [12.2 MB] Get:92 http://mirror.einval.org/debian unstable/main arm64 fontconfig-config arm64 2.14.2-4 [315 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 fonts-lmodern all 2.005-1 [4540 kB] Get:94 http://mirror.einval.org/debian unstable/main amd64 gcc-13-base amd64 13.2.0-2 [39.3 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libapache-pom-java all 29-2 [5276 B] Get:96 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 13.2.0-2 [57.7 kB] Get:97 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.37-7 [2754 kB] Get:98 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 13.2.0-2 [2559 kB] Get:99 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 13.2.0-2 [9288 B] Get:100 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libbsd0 arm64 0.11.7-4 [113 kB] Get:102 http://mirror.einval.org/debian unstable/main amd64 linux-libc-dev amd64 6.4.11-1 [1821 kB] Get:103 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-2 [89.7 kB] Get:104 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-2 [118 kB] Get:105 http://mirror.einval.org/debian unstable/main amd64 libcom-err2 amd64 1.47.0-2 [19.8 kB] Get:106 http://mirror.einval.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-3 [32.3 kB] Get:107 http://mirror.einval.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-3 [79.1 kB] Get:108 http://mirror.einval.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:109 http://mirror.einval.org/debian unstable/main amd64 libssl3 amd64 3.0.10-1 [2014 kB] Get:110 http://mirror.einval.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-3 [333 kB] Get:111 http://mirror.einval.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-3 [134 kB] Get:112 http://mirror.einval.org/debian unstable/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:113 http://mirror.einval.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:114 http://mirror.einval.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:115 http://mirror.einval.org/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:116 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.37-7 [1903 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libpng16-16 arm64 1.6.40-1 [269 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libfreetype6 arm64 2.13.1+dfsg-1 [404 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libfontconfig1 arm64 2.14.2-4 [383 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libpixman-1-0 arm64 0.42.2-1 [470 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libx11-data all 2:1.8.6-1 [323 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.6-1 [769 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 libcairo2 arm64 1.16.0-7 [527 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libcommons-parent-java all 56-1 [10.8 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 libcommons-logging-java all 1.2-3 [62.4 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libfontbox-java all 1:1.8.16-4 [211 kB] Get:139 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 13.2.0-2 [131 kB] Get:140 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 13.2.0-2 [26.1 kB] Get:141 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 13.2.0-2 [1102 kB] Get:142 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 13.2.0-2 [2334 kB] Get:143 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 13.2.0-2 [694 kB] Get:144 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 13.2.0-2 [1010 kB] Get:145 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 13.2.0-2 [1154 kB] Get:146 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 13.2.0-2 [145 kB] Get:147 http://mirror.einval.org/debian unstable/main amd64 libgcc-13-dev amd64 13.2.0-2 [2539 kB] Get:148 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0 arm64 2.77.2-1 [1348 kB] Get:149 http://mirror.einval.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get:150 http://mirror.einval.org/debian unstable/main arm64 libharfbuzz0b arm64 8.0.1-1 [2121 kB] Get:151 http://mirror.einval.org/debian unstable/main arm64 x11-common all 1:7.7+23 [252 kB] Get:152 http://mirror.einval.org/debian unstable/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get:153 http://mirror.einval.org/debian unstable/main arm64 libkpathsea6 arm64 2022.20220321.62855-8 [149 kB] Get:154 http://mirror.einval.org/debian unstable/main arm64 libpaper1 arm64 1.1.29 [12.6 kB] Get:155 http://mirror.einval.org/debian unstable/main arm64 libpaper-utils arm64 1.1.29 [8776 B] Get:156 http://mirror.einval.org/debian unstable/main arm64 libpdfbox-java all 1:1.8.16-4 [5527 kB] Get:157 http://mirror.einval.org/debian unstable/main arm64 libptexenc1 arm64 2022.20220321.62855-8 [43.1 kB] Get:158 http://mirror.einval.org/debian unstable/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get:159 http://mirror.einval.org/debian unstable/main amd64 libstdc++-13-dev amd64 13.2.0-2 [2221 kB] Get:160 http://mirror.einval.org/debian unstable/main arm64 libsynctex2 arm64 2022.20220321.62855-8 [57.4 kB] Get:161 http://mirror.einval.org/debian unstable/main arm64 libteckit0 arm64 2.5.11+ds1-1+b1 [299 kB] Get:162 http://mirror.einval.org/debian unstable/main arm64 libtexlua53-5 arm64 2022.20220321.62855-8 [103 kB] Get:163 http://mirror.einval.org/debian unstable/main arm64 libxt6 arm64 1:1.2.1-1.1 [172 kB] Get:164 http://mirror.einval.org/debian unstable/main arm64 libxmu6 arm64 2:1.1.3-3 [57.2 kB] Get:165 http://mirror.einval.org/debian unstable/main arm64 libxpm4 arm64 1:3.5.12-1.1 [45.2 kB] Get:166 http://mirror.einval.org/debian unstable/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] Get:167 http://mirror.einval.org/debian unstable/main arm64 libxi6 arm64 2:1.8-1+b1 [82.3 kB] Get:168 http://mirror.einval.org/debian unstable/main arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [58.3 kB] Get:169 http://mirror.einval.org/debian unstable/main arm64 tex-common all 6.18 [32.5 kB] Get:170 http://mirror.einval.org/debian unstable/main arm64 preview-latex-style all 12.2-1 [201 kB] Get:171 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:172 http://mirror.einval.org/debian unstable/main arm64 texlive-binaries arm64 2022.20220321.62855-8 [7542 kB] Get:173 http://mirror.einval.org/debian unstable/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:174 http://mirror.einval.org/debian unstable/main arm64 texlive-base all 2022.20230122-3 [21.9 MB] Get:175 http://mirror.einval.org/debian unstable/main arm64 texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get:176 http://mirror.einval.org/debian unstable/main arm64 texlive-latex-base all 2022.20230122-3 [1182 kB] Get:177 http://mirror.einval.org/debian unstable/main arm64 texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get:178 http://mirror.einval.org/debian unstable/main arm64 texlive-pictures all 2022.20230122-3 [15.8 MB] Get:179 http://mirror.einval.org/debian unstable/main arm64 texlive-latex-extra all 2022.20230122-4 [19.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 223 MB in 3s (80.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 10351 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../libpython3.11-minimal_3.11.5-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.5-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-2_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.5-1_arm64.deb ... Unpacking python3.11-minimal (3.11.5-1) ... Setting up libpython3.11-minimal:arm64 (3.11.5-1) ... Setting up libexpat1:arm64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.5-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 10681 files and directories currently installed.) 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Setting up linux-libc-dev-amd64-cross (6.3.7-1cross1) ... Setting up fonts-noto-mono (20201225-2) ... Setting up bsdextrautils (2.39.2-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.77.2-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.11.5) ... Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up libfontbox-java (1:1.8.16-4) ... Setting up libsqlite3-0:arm64 (3.42.0-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up libmagic1:arm64 (1:5.44-3) ... Setting up linux-libc-dev:amd64 (6.4.11-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up libfakeroot:arm64 (1.32.1-1) ... Setting up tzdata (2023c-10) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Aug 26 04:03:17 UTC 2023. Universal Time is now: Sat Aug 26 04:03:17 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.32.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libpkgconf3:arm64 (1.8.1-1) ... Setting up gcc-13-base:amd64 (13.2.0-2) ... Setting up libx11-data (2:1.8.6-1) ... Setting up libteckit0:arm64 (2.5.11+ds1-1+b1) ... Setting up libapache-pom-java (29-2) ... Setting up gcc-13-cross-base (13.2.0-2cross1) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:arm64 (2022.20220321.62855-8) ... Setting up libpng16-16:arm64 (1.6.40-1) ... Setting up libquadmath0-amd64-cross (13.2.0-2cross1) ... Setting up autopoint (0.21-13) ... Setting up libc6-amd64-cross (2.37-3cross1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libncursesw6:arm64 (6.4+20230625-2) ... Setting up libkpathsea6:arm64 (2022.20220321.62855-8) ... Setting up autoconf (2.71-3) ... Setting up gcc-13-x86-64-linux-gnu-base:arm64 (13.2.0-2cross1) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up fonts-lmodern (2.005-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libgcc-s1-amd64-cross (13.2.0-2cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libbsd0:arm64 (0.11.7-4) ... Setting up libelf1:arm64 (0.189-4) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3) ... Setting up fonts-noto-core (20201225-2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liblocale-gettext-perl (1.07-5) ... Setting up libsynctex2:arm64 (2022.20220321.62855-8) ... Setting up binutils-x86-64-linux-gnu (2.41-4) ... Setting up libstdc++6-amd64-cross (13.2.0-2cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:arm64 (2:1.0.10-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-13) ... Setting up libpdfbox-java (1:1.8.16-4) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-2cross1) ... Setting up fontconfig-config (2.14.2-4) ... Setting up libasan8-amd64-cross (13.2.0-2cross1) ... Setting up liblsan0-amd64-cross (13.2.0-2cross1) ... Setting up libc6-dev-amd64-cross (2.37-3cross1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libtsan2-amd64-cross (13.2.0-2cross1) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up libgomp1-amd64-cross (13.2.0-2cross1) ... Setting up pkgconf:arm64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libitm1-amd64-cross (13.2.0-2cross1) ... Setting up libptexenc1:arm64 (2022.20220321.62855-8) ... Setting up libatomic1-amd64-cross (13.2.0-2cross1) ... Setting up libfreetype6:arm64 (2.13.1+dfsg-1) ... Setting up libhwasan0-amd64-cross (13.2.0-2cross1) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libubsan1-amd64-cross (13.2.0-2cross1) ... Setting up pkg-config:arm64 (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up libx11-6:arm64 (2:1.8.6-1) ... Setting up libharfbuzz0b:arm64 (8.0.1-1) ... Setting up libfontconfig1:arm64 (2.14.2-4) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-1) ... Setting up libpaper1:arm64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libxpm4:arm64 (1:3.5.12-1.1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.5-1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcairo2:arm64 (1.16.0-7) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libgcc-13-dev-amd64-cross (13.2.0-2cross1) ... Setting up libxt6:arm64 (1:1.2.1-1.1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-amd64-cross (13.2.0-2cross1) ... Setting up libpython3-stdlib:arm64 (3.11.4-5+b1) ... Setting up python3.11 (3.11.5-1) ... Setting up libxmu6:arm64 (2:1.1.3-3) ... Setting up libxi6:arm64 (2:1.8-1+b1) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-2cross1) ... Setting up preview-latex-style (12.2-1) ... Setting up debhelper (13.11.5) ... Setting up python3 (3.11.4-5+b1) ... Setting up libxaw7:arm64 (2:1.0.14-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up texlive-binaries (2022.20220321.62855-8) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up g++-13-x86-64-linux-gnu (13.2.0-2cross1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up texlive-latex-base (2022.20230122-3) ... Setting up texlive-latex-recommended (2022.20230122-3) ... Setting up texlive-pictures (2022.20230122-3) ... Setting up texlive-fonts-recommended (2022.20230122-3) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up texlive-latex-extra (2022.20230122-4) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-amd64 (12.10) ... Setting up libgcc-s1:amd64 (13.2.0-2) ... Setting up libc6:amd64 (2.37-7) ... Setting up libhwasan0:amd64 (13.2.0-2) ... Setting up libasan8:amd64 (13.2.0-2) ... Setting up libtsan2:amd64 (13.2.0-2) ... Setting up libstdc++6:amd64 (13.2.0-2) ... Setting up liblsan0:amd64 (13.2.0-2) ... Setting up libitm1:amd64 (13.2.0-2) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libssl3:amd64 (3.0.10-1) ... Setting up libcrypt1:amd64 (1:4.4.36-2) ... Setting up libcom-err2:amd64 (1.47.0-2) ... Setting up libgomp1:amd64 (13.2.0-2) ... Setting up libkrb5support0:amd64 (1.20.1-3) ... Setting up libquadmath0:amd64 (13.2.0-2) ... Setting up libatomic1:amd64 (13.2.0-2) ... Setting up libk5crypto3:amd64 (1.20.1-3) ... Setting up libubsan1:amd64 (13.2.0-2) ... Setting up libgcc-13-dev:amd64 (13.2.0-2) ... Setting up libcrypt-dev:amd64 (1:4.4.36-2) ... Setting up libkrb5-3:amd64 (1.20.1-3) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-3) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.37-7) ... Setting up libstdc++-13-dev:amd64 (13.2.0-2) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-7) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64 any-i386 m68k sh4 all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.41-4 dpkg-dev_1.21.22 g++-13_13.2.0-2 gcc-13_13.2.0-2 libc6-dev_2.37-7 libstdc++-13-dev_13.2.0-2 libstdc++-13-dev-amd64-cross_13.2.0-2cross1 libstdc++6_13.2.0-2 libstdc++6-amd64-cross_13.2.0-2cross1 linux-libc-dev_6.4.11-1 Package versions: apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.1 bash_5.2.15-2+b4 binutils_2.41-4 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libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1+b1 libxi6_2:1.8-1+b1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3 libxmu6_2:1.1.3-3 libxpm4_1:3.5.12-1.1 libxrender1_1:0.9.10-1.1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.5+dfsg2-1 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_6.4.11-1 linux-libc-dev-amd64-cross_6.3.7-1cross1 login_1:4.13+dfsg1-1+b1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 media-types_10.1.0 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 patch_2.7.6-7 perl_5.36.0-8 perl-base_5.36.0-8 perl-modules-5.36_5.36.0-8 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 preview-latex-style_12.2-1 python3_3.11.4-5+b1 python3-minimal_3.11.4-5+b1 python3.11_3.11.5-1 python3.11-minimal_3.11.5-1 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.07-1 t1utils_1.41-4 tar_1.34+dfsg-1.2 tex-common_6.18 texlive-base_2022.20230122-3 texlive-binaries_2022.20220321.62855-8 texlive-fonts-recommended_2022.20230122-3 texlive-latex-base_2022.20230122-3 texlive-latex-extra_2022.20230122-4 texlive-latex-recommended_2022.20230122-3 texlive-pictures_2022.20230122-3 tzdata_2023c-10 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.39.2-1 x11-common_1:7.7+23 xdg-utils_1.1.3-4.1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: probabel Binary: probabel, probabel-examples Architecture: any-amd64 any-i386 m68k sh4 all Version: 0.5.0+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , L.C. Karssen , Pranav Ballaney Homepage: http://www.genabel.org Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/probabel Vcs-Git: https://salsa.debian.org/med-team/probabel.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libeigen3-dev, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, r-cran-survival , debhelper Package-List: probabel deb science optional arch=any-amd64,any-i386,m68k,sh4,x32 probabel-examples deb science optional arch=all Checksums-Sha1: de12edeb7b37edcfe5c0e68b05d2fbc4bb2a08aa 1774384 probabel_0.5.0+dfsg.orig.tar.xz ce224abc401f6e89330a291a10bd0104c914dbf7 7944 probabel_0.5.0+dfsg-6.debian.tar.xz Checksums-Sha256: 610daf84ba8883b5908cd125c6c117068cfbac38ee486d496622b1d9e0726ca3 1774384 probabel_0.5.0+dfsg.orig.tar.xz a4bcc8028ad72292f96588b87c1930251fcc6a4a9a4e8ad31e579ffc9213c120 7944 probabel_0.5.0+dfsg-6.debian.tar.xz Files: efdfa6dab47edc3b8dd5deb1f6717b9b 1774384 probabel_0.5.0+dfsg.orig.tar.xz 12182c02fa34f70ccb817083075f35d2 7944 probabel_0.5.0+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmITaO8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGcNg//fW1YmUG48k3igd0Ieoh8not9wY/tq7An Xy6SX5sEAhtRQzkc52iEALk4y4uwoclCWRHoUd74nSYku5mKb+2gcwCSqHRPx4Yo lWEaV5QnzjJ2IZvV4j14fkXv+3/1v2vAsXjO3nVTMUJR6LQA2nHns9RSVAuAJTVU DB5PVuDO05UIenIguMNbmQQ2i23PnMTjkQRjGwb09Fx12y9L2H7HFPEFh8jIY5sU iWvavfpkYOgkd5MkHIAh4Q5x7SQKvUPNjH6T7/5maDQnlVC4ngg7cwxCi+P1xsgJ LI+6EW+9k91wbyylxPvjNdn5vGeRzGNFKw505gXZ8U/95p07RFEGNJcwjlR5Pa2O jMRlOvyifXSHvh1I4BCdolM4O45HtkXO5CcaK9fFjNNMIzrgAARSgLTDm/5PPd5I i+3CLsEUHrH9m0LCNmoZjPcelAgureRFi4FQlQlYZ/p99dFLOgwNCLq6DtKqd/Sb vlDW7PWMEf8+fcTieLYnhmX6vKqzzhDl8KgBmGVyH9IsR9OariSiuZYO/xo+AsYa 4/GhYjxRTfNo0F0vNbo9mhwsnixDKnGgcyaTLN73D2NTOOyFQG7bqHMw0gN2h9RW XQkD7fbw9JOwRIFZ5DKQ7ehwqk5VUS5DsG1XLDfcLQwkIb0sdrvg8rPcNjcbmhXI ytvjy2sp3V0= =z2tG -----END PGP SIGNATURE----- gpgv: Signature made Mon Feb 21 10:26:55 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./probabel_0.5.0+dfsg-6.dsc: no acceptable signature found dpkg-source: info: extracting probabel in /<> dpkg-source: info: unpacking probabel_0.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking probabel_0.5.0+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying examples.patch dpkg-source: info: applying c++11.patch dpkg-source: info: applying ignore_failing_build_time_test.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package probabel dpkg-buildpackage: info: source version 0.5.0+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --disable-silent-rules --with-eigen-include-path=/usr/include/eigen3 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu --disable-silent-rules --with-eigen-include-path=/usr/include/eigen3 configure: loading site script /etc/dpkg-cross/cross-config.amd64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-linux-gnu-gcc... none checking whether ln -s works... yes checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking for x86_64-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of x86_64-linux-gnu-g++... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking for libintl.h... yes checking for limits.h... yes checking for stddef.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/param.h... yes checking for wchar.h... yes checking for wctype.h... yes checking for Eigen/Dense... yes checking for Eigen/LU... yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for off_t... yes checking for size_t... (cached) yes checking for error_at_line... yes checking for pow... yes checking for putenv... yes checking for sqrt... yes checking for strdup... yes checking for strncasecmp... yes checking for floor... yes checking for working strtod... no checking for pow... (cached) yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for a sed that does not truncate output... /usr/bin/sed checking for gawk... (cached) mawk checking for R... no configure: R not found - Unable to do tests comparing ProbABEL output against R output configure: building of the PDF of the user manual from LaTeX source is enabled checking for pdflatex... pdflatex checking for doxygen... no configure: Doxygen not found - Not generating code documentation configure: building of palinear is enabled configure: building of palogist is enabled configure: building of pacoxph is enabled checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating examples/Makefile config.status: creating checks/Makefile config.status: creating checks/R-tests/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-am make[3]: Entering directory '/<>/src' x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-main.o `test -f 'main.cpp' || echo './'`main.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-invsigma.o `test -f 'invsigma.cpp' || echo './'`invsigma.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-gendata.o `test -f 'gendata.cpp' || echo './'`gendata.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-eigen_mematrix.o `test -f 'eigen_mematrix.cpp' || echo './'`eigen_mematrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-command_line_settings.o `test -f 'command_line_settings.cpp' || echo './'`command_line_settings.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-reg1.o `test -f 'reg1.cpp' || echo './'`reg1.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-usage.o `test -f 'usage.cpp' || echo './'`usage.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-utilities.o `test -f 'utilities.cpp' || echo './'`utilities.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-phedata.o `test -f 'phedata.cpp' || echo './'`phedata.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-regdata.o `test -f 'regdata.cpp' || echo './'`regdata.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-maskedmatrix.o `test -f 'maskedmatrix.cpp' || echo './'`maskedmatrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-main_functions_dump.o `test -f 'main_functions_dump.cpp' || echo './'`main_functions_dump.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palinear-mlinfo.o `test -f 'mlinfo.cpp' || echo './'`mlinfo.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-AbstractMatrix.o `test -f 'fvlib/AbstractMatrix.cpp' || echo './'`fvlib/AbstractMatrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-CastUtils.o `test -f 'fvlib/CastUtils.cpp' || echo './'`fvlib/CastUtils.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-convert_util.o `test -f 'fvlib/convert_util.cpp' || echo './'`fvlib/convert_util.cpp In file included from /usr/x86_64-linux-gnu/include/stdio.h:906, from /usr/x86_64-linux-gnu/include/c++/13/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/13/bits/basic_string.h:4097, from /usr/x86_64-linux-gnu/include/c++/13/string:54, from fvlib/convert_util.cpp:2: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void text2fvf(std::string, std::string, std::string, std::string, std::string, int, int, long unsigned int, long unsigned int, int, int, short unsigned int, bool, std::string)’ at fvlib/convert_util.cpp:299:20: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: argument 1 null where non-null expected [-Wnonnull] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: in a call to built-in function ‘int __builtin___sprintf_chk(char*, int, long unsigned int, const char*, ...)’ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void text2fvf(std::string, std::string, std::string, std::string, std::string, int, int, long unsigned int, long unsigned int, int, int, short unsigned int, bool, std::string)’ at fvlib/convert_util.cpp:307:20: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: argument 1 null where non-null expected [-Wnonnull] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: in a call to built-in function ‘int __builtin___sprintf_chk(char*, int, long unsigned int, const char*, ...)’ /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: null destination pointer [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void text2fvf(std::string, std::string, std::string, std::string, std::string, int, int, long unsigned int, long unsigned int, int, int, short unsigned int, bool, std::string)’ at fvlib/convert_util.cpp:299:20: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: null destination pointer [-Wformat-overflow=] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-FileVector.o `test -f 'fvlib/FileVector.cpp' || echo './'`fvlib/FileVector.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-FilteredMatrix.o `test -f 'fvlib/FilteredMatrix.cpp' || echo './'`fvlib/FilteredMatrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-frutil.o `test -f 'fvlib/frutil.cpp' || echo './'`fvlib/frutil.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-Logger.o `test -f 'fvlib/Logger.cpp' || echo './'`fvlib/Logger.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-RealHandlerWrapper.o `test -f 'fvlib/RealHandlerWrapper.cpp' || echo './'`fvlib/RealHandlerWrapper.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-ReusableFileHandle.o `test -f 'fvlib/ReusableFileHandle.cpp' || echo './'`fvlib/ReusableFileHandle.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLINEAR -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palinear-Transposer.o `test -f 'fvlib/Transposer.cpp' || echo './'`fvlib/Transposer.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o palinear palinear-main.o palinear-invsigma.o palinear-gendata.o palinear-eigen_mematrix.o palinear-command_line_settings.o palinear-reg1.o palinear-usage.o palinear-utilities.o palinear-phedata.o palinear-regdata.o palinear-maskedmatrix.o palinear-main_functions_dump.o palinear-mlinfo.o fvlib/palinear-AbstractMatrix.o fvlib/palinear-CastUtils.o fvlib/palinear-convert_util.o fvlib/palinear-FileVector.o fvlib/palinear-FilteredMatrix.o fvlib/palinear-frutil.o fvlib/palinear-Logger.o fvlib/palinear-RealHandlerWrapper.o fvlib/palinear-ReusableFileHandle.o fvlib/palinear-Transposer.o x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-main.o `test -f 'main.cpp' || echo './'`main.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-invsigma.o `test -f 'invsigma.cpp' || echo './'`invsigma.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-gendata.o `test -f 'gendata.cpp' || echo './'`gendata.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-eigen_mematrix.o `test -f 'eigen_mematrix.cpp' || echo './'`eigen_mematrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-command_line_settings.o `test -f 'command_line_settings.cpp' || echo './'`command_line_settings.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-reg1.o `test -f 'reg1.cpp' || echo './'`reg1.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-usage.o `test -f 'usage.cpp' || echo './'`usage.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-utilities.o `test -f 'utilities.cpp' || echo './'`utilities.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-phedata.o `test -f 'phedata.cpp' || echo './'`phedata.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-regdata.o `test -f 'regdata.cpp' || echo './'`regdata.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-maskedmatrix.o `test -f 'maskedmatrix.cpp' || echo './'`maskedmatrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-main_functions_dump.o `test -f 'main_functions_dump.cpp' || echo './'`main_functions_dump.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o palogist-mlinfo.o `test -f 'mlinfo.cpp' || echo './'`mlinfo.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-AbstractMatrix.o `test -f 'fvlib/AbstractMatrix.cpp' || echo './'`fvlib/AbstractMatrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-CastUtils.o `test -f 'fvlib/CastUtils.cpp' || echo './'`fvlib/CastUtils.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-convert_util.o `test -f 'fvlib/convert_util.cpp' || echo './'`fvlib/convert_util.cpp In file included from /usr/x86_64-linux-gnu/include/stdio.h:906, from /usr/x86_64-linux-gnu/include/c++/13/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/13/bits/basic_string.h:4097, from /usr/x86_64-linux-gnu/include/c++/13/string:54, from fvlib/convert_util.cpp:2: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void text2fvf(std::string, std::string, std::string, std::string, std::string, int, int, long unsigned int, long unsigned int, int, int, short unsigned int, bool, std::string)’ at fvlib/convert_util.cpp:299:20: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: argument 1 null where non-null expected [-Wnonnull] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: in a call to built-in function ‘int __builtin___sprintf_chk(char*, int, long unsigned int, const char*, ...)’ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void text2fvf(std::string, std::string, std::string, std::string, std::string, int, int, long unsigned int, long unsigned int, int, int, short unsigned int, bool, std::string)’ at fvlib/convert_util.cpp:307:20: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: argument 1 null where non-null expected [-Wnonnull] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: in a call to built-in function ‘int __builtin___sprintf_chk(char*, int, long unsigned int, const char*, ...)’ /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: null destination pointer [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void text2fvf(std::string, std::string, std::string, std::string, std::string, int, int, long unsigned int, long unsigned int, int, int, short unsigned int, bool, std::string)’ at fvlib/convert_util.cpp:299:20: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: null destination pointer [-Wformat-overflow=] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-FileVector.o `test -f 'fvlib/FileVector.cpp' || echo './'`fvlib/FileVector.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-FilteredMatrix.o `test -f 'fvlib/FilteredMatrix.cpp' || echo './'`fvlib/FilteredMatrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-frutil.o `test -f 'fvlib/frutil.cpp' || echo './'`fvlib/frutil.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-Logger.o `test -f 'fvlib/Logger.cpp' || echo './'`fvlib/Logger.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-RealHandlerWrapper.o `test -f 'fvlib/RealHandlerWrapper.cpp' || echo './'`fvlib/RealHandlerWrapper.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-ReusableFileHandle.o `test -f 'fvlib/ReusableFileHandle.cpp' || echo './'`fvlib/ReusableFileHandle.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DLOGISTIC -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/palogist-Transposer.o `test -f 'fvlib/Transposer.cpp' || echo './'`fvlib/Transposer.cpp x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o palogist palogist-main.o palogist-invsigma.o palogist-gendata.o palogist-eigen_mematrix.o palogist-command_line_settings.o palogist-reg1.o palogist-usage.o palogist-utilities.o palogist-phedata.o palogist-regdata.o palogist-maskedmatrix.o palogist-main_functions_dump.o palogist-mlinfo.o fvlib/palogist-AbstractMatrix.o fvlib/palogist-CastUtils.o fvlib/palogist-convert_util.o fvlib/palogist-FileVector.o fvlib/palogist-FilteredMatrix.o fvlib/palogist-frutil.o fvlib/palogist-Logger.o fvlib/palogist-RealHandlerWrapper.o fvlib/palogist-ReusableFileHandle.o fvlib/palogist-Transposer.o x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-coxfit2.o `test -f 'coxfit2.c' || echo './'`coxfit2.c x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-chinv2.o `test -f 'chinv2.c' || echo './'`chinv2.c x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-cholesky2.o `test -f 'cholesky2.c' || echo './'`cholesky2.c x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-chsolve2.o `test -f 'chsolve2.c' || echo './'`chsolve2.c x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-dmatrix.o `test -f 'dmatrix.c' || echo './'`dmatrix.c x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-main.o `test -f 'main.cpp' || echo './'`main.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-invsigma.o `test -f 'invsigma.cpp' || echo './'`invsigma.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-gendata.o `test -f 'gendata.cpp' || echo './'`gendata.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-eigen_mematrix.o `test -f 'eigen_mematrix.cpp' || echo './'`eigen_mematrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-command_line_settings.o `test -f 'command_line_settings.cpp' || echo './'`command_line_settings.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-reg1.o `test -f 'reg1.cpp' || echo './'`reg1.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-usage.o `test -f 'usage.cpp' || echo './'`usage.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-utilities.o `test -f 'utilities.cpp' || echo './'`utilities.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-phedata.o `test -f 'phedata.cpp' || echo './'`phedata.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-regdata.o `test -f 'regdata.cpp' || echo './'`regdata.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-maskedmatrix.o `test -f 'maskedmatrix.cpp' || echo './'`maskedmatrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-main_functions_dump.o `test -f 'main_functions_dump.cpp' || echo './'`main_functions_dump.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-mlinfo.o `test -f 'mlinfo.cpp' || echo './'`mlinfo.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-AbstractMatrix.o `test -f 'fvlib/AbstractMatrix.cpp' || echo './'`fvlib/AbstractMatrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-CastUtils.o `test -f 'fvlib/CastUtils.cpp' || echo './'`fvlib/CastUtils.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-convert_util.o `test -f 'fvlib/convert_util.cpp' || echo './'`fvlib/convert_util.cpp In file included from /usr/x86_64-linux-gnu/include/stdio.h:906, from /usr/x86_64-linux-gnu/include/c++/13/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/13/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/13/bits/basic_string.h:4097, from /usr/x86_64-linux-gnu/include/c++/13/string:54, from fvlib/convert_util.cpp:2: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void text2fvf(std::string, std::string, std::string, std::string, std::string, int, int, long unsigned int, long unsigned int, int, int, short unsigned int, bool, std::string)’ at fvlib/convert_util.cpp:299:20: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: argument 1 null where non-null expected [-Wnonnull] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: in a call to built-in function ‘int __builtin___sprintf_chk(char*, int, long unsigned int, const char*, ...)’ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void text2fvf(std::string, std::string, std::string, std::string, std::string, int, int, long unsigned int, long unsigned int, int, int, short unsigned int, bool, std::string)’ at fvlib/convert_util.cpp:307:20: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: argument 1 null where non-null expected [-Wnonnull] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: in a call to built-in function ‘int __builtin___sprintf_chk(char*, int, long unsigned int, const char*, ...)’ /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: null destination pointer [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void text2fvf(std::string, std::string, std::string, std::string, std::string, int, int, long unsigned int, long unsigned int, int, int, short unsigned int, bool, std::string)’ at fvlib/convert_util.cpp:299:20: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: warning: null destination pointer [-Wformat-overflow=] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-FileVector.o `test -f 'fvlib/FileVector.cpp' || echo './'`fvlib/FileVector.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-FilteredMatrix.o `test -f 'fvlib/FilteredMatrix.cpp' || echo './'`fvlib/FilteredMatrix.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-frutil.o `test -f 'fvlib/frutil.cpp' || echo './'`fvlib/frutil.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-Logger.o `test -f 'fvlib/Logger.cpp' || echo './'`fvlib/Logger.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-RealHandlerWrapper.o `test -f 'fvlib/RealHandlerWrapper.cpp' || echo './'`fvlib/RealHandlerWrapper.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-ReusableFileHandle.o `test -f 'fvlib/ReusableFileHandle.cpp' || echo './'`fvlib/ReusableFileHandle.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fvlib/pacoxph-Transposer.o `test -f 'fvlib/Transposer.cpp' || echo './'`fvlib/Transposer.cpp x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DCOXPH -I/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -D_NOT_R_FILEVECTOR -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pacoxph-coxph_data.o `test -f 'coxph_data.cpp' || echo './'`coxph_data.cpp x86_64-linux-gnu-g++ -I ../src/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pacoxph pacoxph-coxfit2.o pacoxph-chinv2.o pacoxph-cholesky2.o pacoxph-chsolve2.o pacoxph-dmatrix.o pacoxph-main.o pacoxph-invsigma.o pacoxph-gendata.o pacoxph-eigen_mematrix.o pacoxph-command_line_settings.o pacoxph-reg1.o pacoxph-usage.o pacoxph-utilities.o pacoxph-phedata.o pacoxph-regdata.o pacoxph-maskedmatrix.o pacoxph-main_functions_dump.o pacoxph-mlinfo.o fvlib/pacoxph-AbstractMatrix.o fvlib/pacoxph-CastUtils.o fvlib/pacoxph-convert_util.o fvlib/pacoxph-FileVector.o fvlib/pacoxph-FilteredMatrix.o fvlib/pacoxph-frutil.o fvlib/pacoxph-Logger.o fvlib/pacoxph-RealHandlerWrapper.o fvlib/pacoxph-ReusableFileHandle.o fvlib/pacoxph-Transposer.o pacoxph-coxph_data.o make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making all in doc make[2]: Entering directory '/<>/doc' === Making ProbABEL_manual.aux file === pdflatex ./ProbABEL_manual.tex This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./ProbABEL_manual.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def)) 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(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) No file ProbABEL_manual.toc. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) [2] Overfull \hbox (7.36137pt too wide) in paragraph at lines 171--174 \T1/cmr/m/n/12 Prob-A-BEL web page ([][]$\T1/cmtt/m/n/12 http : / / www . genab el . org / packages / ProbABEL$[][]\T1/cmr/m/n/12 ). LaTeX Warning: Reference `sec:obtain' on page 3 undefined on input line 181. [3] Overfull \hbox (123.30513pt too wide) in paragraph at lines 238--241 \T1/cmtt/m/n/12 ProbABEL\T1/cmr/m/n/12 . Let's in-stall in a sub-di-rec-tory of your home di-rec-tory, e.g. \T1/cmtt/m/n/12 /home/yourusername/ProbABEL\T1/cmr /m/n/12 : Overfull \hbox (4.73831pt too wide) in paragraph at lines 268--272 []\T1/cmr/m/n/12 If all went well you will find the ex-e-cutable pro-grams (\T1 /cmtt/m/n/12 palinear\T1/cmr/m/n/12 , \T1/cmtt/m/n/12 palogist\T1/cmr/m/n/12 , [4] Overfull \hbox (1.38382pt too wide) in paragraph at lines 274--279 \T1/cmtt/m/n/12 ProbABEL \T1/cmr/m/n/12 takes three files as in-put: a file con -tain-ing SNP in-for-ma-tion (e.g. the [5] LaTeX Warning: Reference `sec:runanalysis' on page 6 undefined on input line 35 3. [6] Overfull \hbox (12.56972pt too wide) in paragraph at lines 377--384 []\T1/cmr/m/n/12 In the case of lin-ear or lo-gis-tic re-gres-sion (pro-grams \ T1/cmtt/m/n/12 palinear \T1/cmr/m/n/12 and \T1/cmtt/m/n/12 palogist\T1/cmr/m/n/ 12 , Overfull \hbox (14.44846pt too wide) in paragraph at lines 377--384 \T1/cmr/m/n/12 lin-ear re-gres-sion anal-y-sis fol-low here (also to be found i n \T1/cmtt/m/n/12 examples/height.txt\T1/cmr/m/n/12 ) [7] [8] Overfull \hbox (5.0841pt too wide) in paragraph at lines 454--458 []\T1/cmr/m/n/12 There are in to-tal 11 com-mand line op-tions you can spec-ify to the \T1/cmtt/m/n/12 ProbABEL [9] LaTeX Warning: Reference `ssec:dosein' on page 10 undefined on input line 503. LaTeX Warning: Reference `ssec:phenoin' on page 10 undefined on input line 505. LaTeX Warning: Reference `ssec:infoin' on page 10 undefined on input line 507. [10] Overfull \hbox (17.4505pt too wide) in paragraph at lines 512--512 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mldose -i gtdata/test.m linfo[] Overfull \hbox (29.79749pt too wide) in paragraph at lines 535--535 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mlprob -i gtdata/test.m linfo \[] Overfull \hbox (54.49146pt too wide) in paragraph at lines 545--545 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mlprob.fvi -i gtdata/te st.mlinfo \[] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 550. Overfull \hbox (8.43651pt too wide) in paragraph at lines 552--563 \T1/cmr/m/n/12 covariance ma-trix goes as in-put pa-ram-e-ter with that op-tion , e.g. [][][][] [11] Overfull \hbox (42.14447pt too wide) in paragraph at lines 569--569 [] \T1/cmtt/m/n/12 h2.obj$InvSigma * h2.obj$h2an$estimate[length(h2.obj$h2an$e stimate)][] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 585. [12] LaTeX Warning: Reference `sec:allcov' on page 13 undefined on input line 621. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 626. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 643. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 662. LaTeX Warning: Reference `sec:methodology' on page 13 undefined on input line 6 66. [13] [14] Overfull \hbox (4.6171pt too wide) in paragraph at lines 746--750 \T1/cmr/m/n/12 After in-stalling \T1/cmtt/m/n/12 ProbABEL \T1/cmr/m/n/12 you ca n find the \T1/cmtt/m/n/12 prepare_data.R \T1/cmr/m/n/12 file in the \T1/cmtt/m /n/12 scripts [15] [16] Overfull \hbox (8.33644pt too wide) in paragraph at lines 848--850 []\T1/cmr/m/n/12 Secondly, the Wald test can be used; for that the in-verse var iance-covariance [17] [18] LaTeX Warning: Reference `eq:expectation' on page 19 undefined on input line 94 4. LaTeX Warning: Reference `kinship' on page 19 undefined on input line 956. [19] [20] [21] No file ProbABEL_manual.ind. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) >/pr obabel-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-v ar/fonts/pk/ljfour/jknappen/ec/ecti1200.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt1095 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt1095 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt1095.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf Ok) ) ) ) Font metrics written on ectt1095.tfm. 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Transcript written on ectt1095.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1095.600pk: successfully generated. >/probabel -0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fon ts/pk/ljfour/jknappen/ec/ectt1095.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt1440 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt1440 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt1440.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf Ok) ) ) ) Font metrics written on ectt1440.tfm. Output written on ectt1440.600gf (256 characters, 61024 bytes). Transcript written on ectt1440.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1440.600pk: successfully generated. >/probabel-0.5.0 +dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ ljfour/jknappen/ec/ectt1440.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm1000 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm1000 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm1000.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) (some charht values had to be adjusted by as much as 0.06586pt) Font metrics written on ecrm1000.tfm. Output written on ecrm1000.600gf (256 characters, 51184 bytes). Transcript written on ecrm1000.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1000.600pk: successfully generated. >/ debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour /jknappen/ec/ecrm1000.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm0700 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm0700 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm0700.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) Font metrics written on ecrm0700.tfm. Output written on ecrm0700.600gf (256 characters, 37344 bytes). Transcript written on ecrm0700.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm0700.600pk: successfully generated. >/debian /.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknap pen/ec/ecrm0700.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt0800 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt0800 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt0800.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf Ok) ) ) ) Font metrics written on ectt0800.tfm. Output written on ectt0800.600gf (256 characters, 35488 bytes). Transcript written on ectt0800.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt0800.600pk: successfully generated. >/debian/.debh elper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec /ectt0800.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecbx1200 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecbx1200 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx1200.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) Font metrics written on ecbx1200.tfm. Output written on ecbx1200.600gf (256 characters, 59220 bytes). Transcript written on ecbx1200.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1200.600pk: successfully generated. >/debian/.debhelper/ generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1 200.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm0800 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm0800 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm0800.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) (some charht values had to be adjusted by as much as 0.06445pt) Font metrics written on ecrm0800.tfm. Output written on ecrm0800.600gf (256 characters, 41732 bytes). Transcript written on ecrm0800.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm0800.600pk: successfully generated. >/debian/.debhelper/genera ted/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm0800.60 0pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt1000 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt1000 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt1000.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf Ok) ) ) ) Font metrics written on ectt1000.tfm. Output written on ectt1000.600gf (256 characters, 43832 bytes). Transcript written on ectt1000.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1000.600pk: successfully generated. >/debian/.debhelper/generated/_s ource/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1000.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1200 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1200 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1200.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06665pt) Font metrics written on tcrm1200.tfm. Output written on tcrm1200.600gf (128 characters, 28032 bytes). Transcript written on tcrm1200.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk: successfully generated. < /<>/debian/.debhelper/generated/_source/ home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecbx1440 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecbx1440 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx1440.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) (some charht values had to be adjusted by as much as 0.10997pt) Font metrics written on ecbx1440.tfm. Output written on ecbx1440.600gf (256 characters, 70764 bytes). Transcript written on ecbx1440.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1440.600pk: successfully generated. kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt1728 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt1728 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt1728.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf Ok) ) ) ) Font metrics written on ectt1728.tfm. Output written on ectt1728.600gf (256 characters, 72884 bytes). Transcript written on ectt1728.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1728.600pk: successfully generated. kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt1200 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt1200 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt1200.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf Ok) ) ) ) Font metrics written on ectt1200.tfm. Output written on ectt1200.600gf (256 characters, 51736 bytes). Transcript written on ectt1200.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1200.600pk: successfully generated. kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm1200 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm1200 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm1200.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) (some charht values had to be adjusted by as much as 0.07143pt) Font metrics written on ecrm1200.tfm. Output written on ecrm1200.600gf (256 characters, 60320 bytes). Transcript written on ecrm1200.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1200.600pk: successfully generated. >/p robabel-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf- var/fonts/pk/ljfour/jknappen/ec/ecrm1200.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecbx1728 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecbx1728 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx1728.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) (some charht values had to be adjusted by as much as 0.13197pt) Font metrics written on ecbx1728.tfm. Output written on ecbx1728.600gf (256 characters, 84848 bytes). Transcript written on ecbx1728.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1728.600pk: successfully generated. >/probabe l-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fo nts/pk/ljfour/jknappen/ec/ecbx1728.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm1095 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm1095 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm1095.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) (some charht values had to be adjusted by as much as 0.07599pt) Font metrics written on ecrm1095.tfm. Output written on ecrm1095.600gf (256 characters, 55424 bytes). Transcript written on ecrm1095.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1095.600pk: successfully generated. >/probabel-0.5. 0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk /ljfour/jknappen/ec/ecrm1095.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm1440 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm1440 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm1440.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) (some charht values had to be adjusted by as much as 0.08084pt) Font metrics written on ecrm1440.tfm. Output written on ecrm1440.600gf (256 characters, 71064 bytes). Transcript written on ecrm1440.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1440.600pk: successfully generated. > /debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfou r/jknappen/ec/ecrm1440.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecti1440 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecti1440 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecti1440.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecti.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/extextit.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exileast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exilwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exilig.mf Ok [25] [26] [27] [28] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exitalp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exillett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exidigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exiligtb.mf Ok) ) ) ) (some charht values had to be adjusted by as much as 0.07997pt) Font metrics written on ecti1440.tfm. Output written on ecti1440.600gf (256 characters, 74296 bytes). Transcript written on ecti1440.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecti1440.600pk: successfully generated. >/debia n/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jkna ppen/ec/ecti1440.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm2074 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm2074 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm2074.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125] [95] [127] [32]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58] [59] [61] [96] [189] [17] [45] [16] [21] [22]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf Ok [24] [34] [35] [36] [37] [64] [191] [159]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf Ok [25] [26] [28] [27] [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf Ok [38] [63] [190]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf Ok) ) ) ) (some charht values had to be adjusted by as much as 0.1171pt) Font metrics written on ecrm2074.tfm. Output written on ecrm2074.600gf (256 characters, 101464 bytes). Transcript written on ecrm2074.log. mktexpk: /<>/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm2074.600pk: successfully generated. >/debian/.deb helper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/e c/ecrm2074.600pk> Output written on ProbABEL_manual.pdf (22 pages, 410561 bytes). Transcript written on ProbABEL_manual.log. diff: .btmp: No such file or directory === Making PDF === pdflatex ./ProbABEL_manual.tex This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./ProbABEL_manual.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/titleref/titleref.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file ProbABEL_manual.idx (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./ProbABEL_manual.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (./ProbABEL_manual.out) (./ProbABEL_manual.out) (./ProbABEL_manual.toc (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) [1{/var/lib/texmf/font s/map/pdftex/updmap/pdftex.map}]) [2] [3] Overfull \hbox (7.36137pt too wide) in paragraph at lines 171--174 \T1/cmr/m/n/12 Prob-A-BEL web page ([][]$\T1/cmtt/m/n/12 http : / / www . genab el . org / packages / ProbABEL$[][]\T1/cmr/m/n/12 ). [4] Overfull \hbox (123.30513pt too wide) in paragraph at lines 238--241 \T1/cmtt/m/n/12 ProbABEL\T1/cmr/m/n/12 . Let's in-stall in a sub-di-rec-tory of your home di-rec-tory, e.g. \T1/cmtt/m/n/12 /home/yourusername/ProbABEL\T1/cmr /m/n/12 : Overfull \hbox (4.73831pt too wide) in paragraph at lines 268--272 []\T1/cmr/m/n/12 If all went well you will find the ex-e-cutable pro-grams (\T1 /cmtt/m/n/12 palinear\T1/cmr/m/n/12 , \T1/cmtt/m/n/12 palogist\T1/cmr/m/n/12 , [5] Overfull \hbox (1.38382pt too wide) in paragraph at lines 274--279 \T1/cmtt/m/n/12 ProbABEL \T1/cmr/m/n/12 takes three files as in-put: a file con -tain-ing SNP in-for-ma-tion (e.g. the [6] [7] Overfull \hbox (12.56972pt too wide) in paragraph at lines 377--384 []\T1/cmr/m/n/12 In the case of lin-ear or lo-gis-tic re-gres-sion (pro-grams \ T1/cmtt/m/n/12 palinear \T1/cmr/m/n/12 and \T1/cmtt/m/n/12 palogist\T1/cmr/m/n/ 12 , Overfull \hbox (14.44846pt too wide) in paragraph at lines 377--384 \T1/cmr/m/n/12 lin-ear re-gres-sion anal-y-sis fol-low here (also to be found i n \T1/cmtt/m/n/12 examples/height.txt\T1/cmr/m/n/12 ) [8] [9] Overfull \hbox (5.0841pt too wide) in paragraph at lines 454--458 []\T1/cmr/m/n/12 There are in to-tal 11 com-mand line op-tions you can spec-ify to the \T1/cmtt/m/n/12 ProbABEL [10] [11] Overfull \hbox (17.4505pt too wide) in paragraph at lines 512--512 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mldose -i gtdata/test.m linfo[] Overfull \hbox (29.79749pt too wide) in paragraph at lines 535--535 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mlprob -i gtdata/test.m linfo \[] Overfull \hbox (54.49146pt too wide) in paragraph at lines 545--545 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mlprob.fvi -i gtdata/te st.mlinfo \[] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 550. Overfull \hbox (8.43651pt too wide) in paragraph at lines 552--563 \T1/cmr/m/n/12 covariance ma-trix goes as in-put pa-ram-e-ter with that op-tion , e.g. [][][][] [12] Overfull \hbox (42.14447pt too wide) in paragraph at lines 569--569 [] \T1/cmtt/m/n/12 h2.obj$InvSigma * h2.obj$h2an$estimate[length(h2.obj$h2an$e stimate)][] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 585. [13] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 626. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 643. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 662. [14] [15] Overfull \hbox (4.6171pt too wide) in paragraph at lines 746--750 \T1/cmr/m/n/12 After in-stalling \T1/cmtt/m/n/12 ProbABEL \T1/cmr/m/n/12 you ca n find the \T1/cmtt/m/n/12 prepare_data.R \T1/cmr/m/n/12 file in the \T1/cmtt/m /n/12 scripts [16] [17] Overfull \hbox (8.33644pt too wide) in paragraph at lines 848--850 []\T1/cmr/m/n/12 Secondly, the Wald test can be used; for that the in-verse var iance-covariance [18] [19] [20] [21] [22] No file ProbABEL_manual.ind. [23] (./ProbABEL_manual.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) >/pr obabel-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-v ar/fonts/pk/ljfour/jknappen/ec/ecti1200.600pk> >/probabel -0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fon ts/pk/ljfour/jknappen/ec/ectt1095.600pk> >/probabel-0.5.0 +dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ ljfour/jknappen/ec/ectt1440.600pk> >/ debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour /jknappen/ec/ecrm1000.600pk> >/debian /.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknap pen/ec/ecrm0700.600pk> >/debian/.debh elper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec /ectt0800.600pk> >/debian/.debhelper/ generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm0 800.600pk> >/debian/.debhelper/genera ted/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1000.60 0pk> >/debian/.debhelper/generated/_s ource/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk> < /<>/debian/.debhelper/generated/_source/ home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1440.600pk> >/p robabel-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf- var/fonts/pk/ljfour/jknappen/ec/ecbx1200.600pk> >/probabe l-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fo nts/pk/ljfour/jknappen/ec/ecbx1728.600pk> >/probabel-0.5. 0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk /ljfour/jknappen/ec/ecrm1095.600pk> > /debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfou r/jknappen/ec/ecrm1440.600pk> >/debia n/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jkna ppen/ec/ecti1440.600pk> >/debian/.deb helper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/e c/ecrm2074.600pk> Output written on ProbABEL_manual.pdf (23 pages, 417310 bytes). Transcript written on ProbABEL_manual.log. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ** Re-running LaTeX ** This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./ProbABEL_manual.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/titleref/titleref.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file ProbABEL_manual.idx (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./ProbABEL_manual.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (./ProbABEL_manual.out) (./ProbABEL_manual.out) (./ProbABEL_manual.toc (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) [1{/var/lib/texmf/font s/map/pdftex/updmap/pdftex.map}]) [2] [3] Overfull \hbox (7.36137pt too wide) in paragraph at lines 171--174 \T1/cmr/m/n/12 Prob-A-BEL web page ([][]$\T1/cmtt/m/n/12 http : / / www . genab el . org / packages / ProbABEL$[][]\T1/cmr/m/n/12 ). [4] Overfull \hbox (123.30513pt too wide) in paragraph at lines 238--241 \T1/cmtt/m/n/12 ProbABEL\T1/cmr/m/n/12 . Let's in-stall in a sub-di-rec-tory of your home di-rec-tory, e.g. \T1/cmtt/m/n/12 /home/yourusername/ProbABEL\T1/cmr /m/n/12 : Overfull \hbox (4.73831pt too wide) in paragraph at lines 268--272 []\T1/cmr/m/n/12 If all went well you will find the ex-e-cutable pro-grams (\T1 /cmtt/m/n/12 palinear\T1/cmr/m/n/12 , \T1/cmtt/m/n/12 palogist\T1/cmr/m/n/12 , [5] Overfull \hbox (1.38382pt too wide) in paragraph at lines 274--279 \T1/cmtt/m/n/12 ProbABEL \T1/cmr/m/n/12 takes three files as in-put: a file con -tain-ing SNP in-for-ma-tion (e.g. the [6] [7] Overfull \hbox (12.56972pt too wide) in paragraph at lines 377--384 []\T1/cmr/m/n/12 In the case of lin-ear or lo-gis-tic re-gres-sion (pro-grams \ T1/cmtt/m/n/12 palinear \T1/cmr/m/n/12 and \T1/cmtt/m/n/12 palogist\T1/cmr/m/n/ 12 , Overfull \hbox (14.44846pt too wide) in paragraph at lines 377--384 \T1/cmr/m/n/12 lin-ear re-gres-sion anal-y-sis fol-low here (also to be found i n \T1/cmtt/m/n/12 examples/height.txt\T1/cmr/m/n/12 ) [8] [9] Overfull \hbox (5.0841pt too wide) in paragraph at lines 454--458 []\T1/cmr/m/n/12 There are in to-tal 11 com-mand line op-tions you can spec-ify to the \T1/cmtt/m/n/12 ProbABEL [10] [11] Overfull \hbox (17.4505pt too wide) in paragraph at lines 512--512 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mldose -i gtdata/test.m linfo[] Overfull \hbox (29.79749pt too wide) in paragraph at lines 535--535 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mlprob -i gtdata/test.m linfo \[] Overfull \hbox (54.49146pt too wide) in paragraph at lines 545--545 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mlprob.fvi -i gtdata/te st.mlinfo \[] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 550. Overfull \hbox (8.43651pt too wide) in paragraph at lines 552--563 \T1/cmr/m/n/12 covariance ma-trix goes as in-put pa-ram-e-ter with that op-tion , e.g. [][][][] [12] Overfull \hbox (42.14447pt too wide) in paragraph at lines 569--569 [] \T1/cmtt/m/n/12 h2.obj$InvSigma * h2.obj$h2an$estimate[length(h2.obj$h2an$e stimate)][] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 585. [13] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 626. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 643. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 662. [14] [15] Overfull \hbox (4.6171pt too wide) in paragraph at lines 746--750 \T1/cmr/m/n/12 After in-stalling \T1/cmtt/m/n/12 ProbABEL \T1/cmr/m/n/12 you ca n find the \T1/cmtt/m/n/12 prepare_data.R \T1/cmr/m/n/12 file in the \T1/cmtt/m /n/12 scripts [16] [17] Overfull \hbox (8.33644pt too wide) in paragraph at lines 848--850 []\T1/cmr/m/n/12 Secondly, the Wald test can be used; for that the in-verse var iance-covariance [18] [19] [20] [21] [22] No file ProbABEL_manual.ind. [23] (./ProbABEL_manual.aux) ) (see the transcript file for additional information) >/pr obabel-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-v ar/fonts/pk/ljfour/jknappen/ec/ecti1200.600pk> >/probabel -0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fon ts/pk/ljfour/jknappen/ec/ectt1095.600pk> >/probabel-0.5.0 +dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ ljfour/jknappen/ec/ectt1440.600pk> >/ debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour /jknappen/ec/ecrm1000.600pk> >/debian /.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknap pen/ec/ecrm0700.600pk> >/debian/.debh elper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec /ectt0800.600pk> >/debian/.debhelper/ generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm0 800.600pk> >/debian/.debhelper/genera ted/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1000.60 0pk> >/debian/.debhelper/generated/_s ource/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk> < /<>/debian/.debhelper/generated/_source/ home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1440.600pk> >/p robabel-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf- var/fonts/pk/ljfour/jknappen/ec/ecbx1200.600pk> >/probabe l-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fo nts/pk/ljfour/jknappen/ec/ecbx1728.600pk> >/probabel-0.5. 0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk /ljfour/jknappen/ec/ecrm1095.600pk> > /debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfou r/jknappen/ec/ecrm1440.600pk> >/debia n/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jkna ppen/ec/ecti1440.600pk> >/debian/.deb helper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/e c/ecrm2074.600pk> Output written on ProbABEL_manual.pdf (23 pages, 417309 bytes). Transcript written on ProbABEL_manual.log. === Making index === makeindex ProbABEL_manual This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file ProbABEL_manual.idx....done (3 entries accepted, 0 rejected). Sorting entries....done (4 comparisons). Generating output file ProbABEL_manual.ind....done (14 lines written, 0 warnings). Output written in ProbABEL_manual.ind. Transcript written in ProbABEL_manual.ilg. === Making final PDF === pdflatex ./ProbABEL_manual.tex This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./ProbABEL_manual.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/titleref/titleref.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file ProbABEL_manual.idx (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./ProbABEL_manual.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (./ProbABEL_manual.out) (./ProbABEL_manual.out) (./ProbABEL_manual.toc (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) [1{/var/lib/texmf/font s/map/pdftex/updmap/pdftex.map}]) [2] [3] Overfull \hbox (7.36137pt too wide) in paragraph at lines 171--174 \T1/cmr/m/n/12 Prob-A-BEL web page ([][]$\T1/cmtt/m/n/12 http : / / www . genab el . org / packages / ProbABEL$[][]\T1/cmr/m/n/12 ). [4] Overfull \hbox (123.30513pt too wide) in paragraph at lines 238--241 \T1/cmtt/m/n/12 ProbABEL\T1/cmr/m/n/12 . Let's in-stall in a sub-di-rec-tory of your home di-rec-tory, e.g. \T1/cmtt/m/n/12 /home/yourusername/ProbABEL\T1/cmr /m/n/12 : Overfull \hbox (4.73831pt too wide) in paragraph at lines 268--272 []\T1/cmr/m/n/12 If all went well you will find the ex-e-cutable pro-grams (\T1 /cmtt/m/n/12 palinear\T1/cmr/m/n/12 , \T1/cmtt/m/n/12 palogist\T1/cmr/m/n/12 , [5] Overfull \hbox (1.38382pt too wide) in paragraph at lines 274--279 \T1/cmtt/m/n/12 ProbABEL \T1/cmr/m/n/12 takes three files as in-put: a file con -tain-ing SNP in-for-ma-tion (e.g. the [6] [7] Overfull \hbox (12.56972pt too wide) in paragraph at lines 377--384 []\T1/cmr/m/n/12 In the case of lin-ear or lo-gis-tic re-gres-sion (pro-grams \ T1/cmtt/m/n/12 palinear \T1/cmr/m/n/12 and \T1/cmtt/m/n/12 palogist\T1/cmr/m/n/ 12 , Overfull \hbox (14.44846pt too wide) in paragraph at lines 377--384 \T1/cmr/m/n/12 lin-ear re-gres-sion anal-y-sis fol-low here (also to be found i n \T1/cmtt/m/n/12 examples/height.txt\T1/cmr/m/n/12 ) [8] [9] Overfull \hbox (5.0841pt too wide) in paragraph at lines 454--458 []\T1/cmr/m/n/12 There are in to-tal 11 com-mand line op-tions you can spec-ify to the \T1/cmtt/m/n/12 ProbABEL [10] [11] Overfull \hbox (17.4505pt too wide) in paragraph at lines 512--512 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mldose -i gtdata/test.m linfo[] Overfull \hbox (29.79749pt too wide) in paragraph at lines 535--535 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mlprob -i gtdata/test.m linfo \[] Overfull \hbox (54.49146pt too wide) in paragraph at lines 545--545 []\T1/cmtt/m/n/12 palinear -p height.txt -d gtdata/test.mlprob.fvi -i gtdata/te st.mlinfo \[] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 550. Overfull \hbox (8.43651pt too wide) in paragraph at lines 552--563 \T1/cmr/m/n/12 covariance ma-trix goes as in-put pa-ram-e-ter with that op-tion , e.g. [][][][] [12] Overfull \hbox (42.14447pt too wide) in paragraph at lines 569--569 [] \T1/cmtt/m/n/12 h2.obj$InvSigma * h2.obj$h2an$estimate[length(h2.obj$h2an$e stimate)][] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 585. [13] Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 626. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 643. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `\lstinline' on input line 662. [14] [15] Overfull \hbox (4.6171pt too wide) in paragraph at lines 746--750 \T1/cmr/m/n/12 After in-stalling \T1/cmtt/m/n/12 ProbABEL \T1/cmr/m/n/12 you ca n find the \T1/cmtt/m/n/12 prepare_data.R \T1/cmr/m/n/12 file in the \T1/cmtt/m /n/12 scripts [16] [17] Overfull \hbox (8.33644pt too wide) in paragraph at lines 848--850 []\T1/cmr/m/n/12 Secondly, the Wald test can be used; for that the in-verse var iance-covariance [18] [19] [20] [21] [22] (./ProbABEL_manual.ind [23] [24]) (./ProbABEL_manual.aux) ) (see the transcript file for additional information) >/pr obabel-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-v ar/fonts/pk/ljfour/jknappen/ec/ecti1200.600pk> >/probabel -0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fon ts/pk/ljfour/jknappen/ec/ectt1095.600pk> >/probabel-0.5.0 +dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ ljfour/jknappen/ec/ectt1440.600pk> >/ debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour /jknappen/ec/ecrm1000.600pk> >/debian /.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknap pen/ec/ecrm0700.600pk> >/debian/.debh elper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec /ectt0800.600pk> >/debian/.debhelper/ generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm0 800.600pk> >/debian/.debhelper/genera ted/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1000.60 0pk> >/debian/.debhelper/generated/_s ource/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk> < /<>/debian/.debhelper/generated/_source/ home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1440.600pk> >/p robabel-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf- var/fonts/pk/ljfour/jknappen/ec/ecbx1200.600pk> >/probabe l-0.5.0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fo nts/pk/ljfour/jknappen/ec/ecbx1728.600pk> >/probabel-0.5. 0+dfsg/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk /ljfour/jknappen/ec/ecrm1095.600pk> > /debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfou r/jknappen/ec/ecrm1440.600pk> >/debia n/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jkna ppen/ec/ecti1440.600pk> >/debian/.deb helper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/e c/ecrm2074.600pk> Output written on ProbABEL_manual.pdf (24 pages, 418253 bytes). Transcript written on ProbABEL_manual.log. rm ProbABEL_manual.aux make[2]: Leaving directory '/<>/doc' Making all in checks make[2]: Entering directory '/<>/checks' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/checks' Making all in examples make[2]: Entering directory '/<>/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/examples' Making all in checks/R-tests make[2]: Entering directory '/<>/checks/R-tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/checks/R-tests' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/probabel-0.5.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c palinear palogist pacoxph '/<>/debian/tmp/usr/bin' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c probabel '/<>/debian/tmp/usr/bin' /usr/bin/mkdir -p '/<>/debian/tmp/etc' /usr/bin/install -c -m 644 probabel_config.cfg.example '/<>/debian/tmp/etc' make install-exec-hook make[4]: Entering directory '/<>/src' /usr/bin/sed -i -e "s;probabel_config.cfg;/etc/probabel_config.cfg;" \ /<>/debian/tmp/usr/bin/probabel /usr/bin/sed -i -e "s;\./;/usr/bin/;" /<>/debian/tmp/usr/bin/probabel /usr/bin/sed -i -e "s;PROBABEL_VERSION;0.5.0;" /<>/debian/tmp/usr/bin/probabel ln -s /<>/debian/tmp/usr/bin/probabel /<>/debian/tmp/usr/bin/probabel.pl make[4]: Leaving directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/probabel/scripts' /usr/bin/install -c -m 644 prepare_data.R extIDS.pl '/<>/debian/tmp/usr/share/probabel/scripts' make install-data-hook make[4]: Entering directory '/<>/src' chmod a+rx /<>/debian/tmp//usr/share/probabel/scripts/extIDS.pl make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in doc make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/doc/probabel' /usr/bin/install -c -m 644 ProbABEL_manual.tex QuickStart.txt short_coxph_data.txt short_height_base_add.out.txt.save short_height.txt short_logist_data.txt short_test.mldose test.map test.mlinfo test_regression.R COPYING LICENSE INSTALL ChangeLog TODO '/<>/debian/tmp/usr/share/doc/probabel' /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/doc/probabel' /usr/bin/install -c -m 644 ProbABEL_manual.pdf '/<>/debian/tmp/usr/share/doc/probabel' /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 probabel.1 probabel.pl.1 palinear.1 palogist.1 pacoxph.1 '/<>/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>/doc' Making install in checks make[2]: Entering directory '/<>/checks' make[3]: Entering directory '/<>/checks' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/checks' make[2]: Leaving directory '/<>/checks' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/probabel/examples' /usr/bin/install -c -m 644 height.txt logist_data.txt mmscore_pheno.PHE coxph_data.txt mmscore.R mmscore_InvSigma_aj.sex.age.dat README '/<>/debian/tmp/usr/share/probabel/examples' /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/probabel/examples' /usr/bin/install -c example_qt.sh example_bt.sh example_cox.sh example_mmscore.sh '/<>/debian/tmp/usr/share/probabel/examples' /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/probabel/examples/gtdata' /usr/bin/install -c -m 644 gtdata/test.mldose gtdata/test.mlprob gtdata/test.mlinfo gtdata/test.map gtdata/test.dose.fvi gtdata/test.dose.fvd gtdata/test.prob.fvi gtdata/test.prob.fvd gtdata/mmscore_gen.mlinfo gtdata/mmscore_gen.mldose gtdata/mmscore_gen.mlprob gtdata/mmscore_gen.dose.fvi gtdata/mmscore_gen.dose.fvd gtdata/mmscore_gen.prob.fvi gtdata/mmscore_gen.prob.fvd '/<>/debian/tmp/usr/share/probabel/examples/gtdata' make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' Making install in checks/R-tests make[2]: Entering directory '/<>/checks/R-tests' make[3]: Entering directory '/<>/checks/R-tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/checks/R-tests' make[2]: Leaving directory '/<>/checks/R-tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a rm debian/probabel/usr/bin/probabel.pl mv debian/probabel/etc/probabel_config.cfg.example debian/probabel/etc/probabel_config.cfg make[1]: Leaving directory '/<>' debian/rules override_dh_installdocs-arch make[1]: Entering directory '/<>' dh_installdocs -a rm debian/probabel/usr/share/doc/probabel/COPYING rm debian/probabel/usr/share/doc/probabel/INSTALL rm debian/probabel/usr/share/doc/probabel/LICENSE rm debian/probabel/usr/share/doc/probabel/ChangeLog make[1]: Leaving directory '/<>' debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs doc/ChangeLog make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'probabel' in '../probabel_0.5.0+dfsg-6_amd64.deb'. dpkg-deb: building package 'probabel-dbgsym' in '../probabel-dbgsym_0.5.0+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=any -O../probabel_0.5.0+dfsg-6_amd64.buildinfo dpkg-genchanges --build=any -O../probabel_0.5.0+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-26T04:21:13Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ probabel_0.5.0+dfsg-6_amd64.changes: ------------------------------------ Format: 1.8 Date: Mon, 21 Feb 2022 11:22:57 +0100 Source: probabel Binary: probabel probabel-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 0.5.0+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: probabel - Toolset for Genome-Wide Association Analysis Changes: probabel (0.5.0+dfsg-6) unstable; urgency=medium . * Restrict architectures to those, where build time test properly succeeds * Add status of this package to README.Debian Checksums-Sha1: 16101074be5e0ce1dbb9d688d422f7a641b53245 7882040 probabel-dbgsym_0.5.0+dfsg-6_amd64.deb f9b4bcd288cea5481f60cbf17474ce607afb8c03 7410 probabel_0.5.0+dfsg-6_amd64.buildinfo e900f9b61315c39cf88a7bbb6eba80978adc46aa 602480 probabel_0.5.0+dfsg-6_amd64.deb Checksums-Sha256: d863818807fc3488bc024cf8bcd39552d28937751972a59345b8abdc9ee725b1 7882040 probabel-dbgsym_0.5.0+dfsg-6_amd64.deb df0edb3c50a04466768e31e8e75246262db94b2ae9f65992a8241ef81f085b7e 7410 probabel_0.5.0+dfsg-6_amd64.buildinfo 466c67b0a3958e83e7c5e1756c208d86fbcc236d4670f29335e751e96c48ecd0 602480 probabel_0.5.0+dfsg-6_amd64.deb Files: 80bb65226699b4ec73da070c20faef4d 7882040 debug optional probabel-dbgsym_0.5.0+dfsg-6_amd64.deb 7ae25c51468f2f53b032cfa46cb80890 7410 science optional probabel_0.5.0+dfsg-6_amd64.buildinfo 01c1012aad37974d3e2bfcd76012a397 602480 science optional probabel_0.5.0+dfsg-6_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: probabel Binary: probabel probabel-dbgsym Architecture: amd64 Version: 0.5.0+dfsg-6 Checksums-Md5: 80bb65226699b4ec73da070c20faef4d 7882040 probabel-dbgsym_0.5.0+dfsg-6_amd64.deb 01c1012aad37974d3e2bfcd76012a397 602480 probabel_0.5.0+dfsg-6_amd64.deb Checksums-Sha1: 16101074be5e0ce1dbb9d688d422f7a641b53245 7882040 probabel-dbgsym_0.5.0+dfsg-6_amd64.deb e900f9b61315c39cf88a7bbb6eba80978adc46aa 602480 probabel_0.5.0+dfsg-6_amd64.deb Checksums-Sha256: d863818807fc3488bc024cf8bcd39552d28937751972a59345b8abdc9ee725b1 7882040 probabel-dbgsym_0.5.0+dfsg-6_amd64.deb 466c67b0a3958e83e7c5e1756c208d86fbcc236d4670f29335e751e96c48ecd0 602480 probabel_0.5.0+dfsg-6_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Sat, 26 Aug 2023 04:21:12 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.1), bash (= 5.2.15-2+b4), binutils (= 2.41-4), binutils-aarch64-linux-gnu (= 2.41-4), binutils-common (= 2.41-4), bsdextrautils (= 2.39.2-1), bsdutils (= 1:2.39.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:13.2.0-1), cpp-13 (= 13.2.0-2), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.5), debianutils (= 5.8-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22), dpkg-dev (= 1.21.22), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), fontconfig-config (= 2.14.2-4), fonts-lmodern (= 2.005-1), fonts-noto-core (= 20201225-2), fonts-noto-mono (= 20201225-2), g++ (= 4:13.2.0-1), g++-13 (= 13.2.0-2), gcc (= 4:13.2.0-1), gcc-13 (= 13.2.0-2), gcc-13-base (= 13.2.0-2), gettext (= 0.21-13), gettext-base (= 0.21-13), grep (= 3.11-3), groff-base (= 1.23.0-2), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libapache-pom-java (= 29-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-2), libatomic1 (= 13.2.0-2), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-4), libblkid1 (= 2.39.2-1), libbrotli1 (= 1.0.9-2+b6), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.37-7), libc-dev-bin (= 2.37-7), libc6 (= 2.37-7), libc6-dev (= 2.37-7), libcairo2 (= 1.16.0-7), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 13.2.0-2), libcom-err2 (= 1.47.0-2), libcommons-logging-java (= 1.2-3), libcommons-parent-java (= 56-1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4), libctf0 (= 2.41-4), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.5), libdpkg-perl (= 1.21.22), libeigen3-dev (= 3.4.0-4), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontbox-java (= 1:1.8.16-4), libfontconfig1 (= 2.14.2-4), libfreetype6 (= 2.13.1+dfsg-1), libgcc-13-dev (= 13.2.0-2), libgcc-s1 (= 13.2.0-2), libgcrypt20 (= 1.10.2-2), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libglib2.0-0 (= 2.77.2-1), libgmp10 (= 2:6.3.0+dfsg-2), libgomp1 (= 13.2.0-2), libgpg-error0 (= 1.47-2), libgprofng0 (= 2.41-4), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.20.1-3), libharfbuzz0b (= 8.0.1-1), libhwasan0 (= 13.2.0-2), libice6 (= 2:1.0.10-1), libicu72 (= 72.1-3), libisl23 (= 0.26-3), libitm1 (= 13.2.0-2), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-3), libkeyutils1 (= 1.6.3-2), libkpathsea6 (= 2022.20220321.62855-8), libkrb5-3 (= 1.20.1-3), libkrb5support0 (= 1.20.1-3), liblsan0 (= 13.2.0-2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.39.2-1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4+20230625-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libpam-modules (= 1.5.2-7), libpam-modules-bin (= 1.5.2-7), libpam-runtime (= 1.5.2-7), libpam0g (= 1.5.2-7), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libpcre2-8-0 (= 10.42-3), libpdfbox-java (= 1:1.8.16-4), libperl5.36 (= 5.36.0-8), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpkgconf3 (= 1.8.1-1), libpng16-16 (= 1.6.40-1), libptexenc1 (= 2022.20220321.62855-8), libpython3-stdlib (= 3.11.4-5+b1), libpython3.11-minimal (= 3.11.5-1), libpython3.11-stdlib (= 3.11.5-1), libquadmath0 (= 13.2.0-2), libreadline8 (= 8.2-1.3), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.5-1), libsframe1 (= 2.41-4), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.39.2-1), libsqlite3-0 (= 3.42.0-1), libssl3 (= 3.0.10-1), libstdc++-13-dev (= 13.2.0-2), libstdc++6 (= 13.2.0-2), libsub-override-perl (= 0.09-4), libsynctex2 (= 2022.20220321.62855-8), libsystemd0 (= 254.1-3), libteckit0 (= 2.5.11+ds1-1+b1), libtexlua53-5 (= 2022.20220321.62855-8), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-2), libubsan1 (= 13.2.0-2), libuchardet0 (= 0.0.7-1), libudev1 (= 254.1-3), libunistring2 (= 1.0-2), libuuid1 (= 2.39.2-1), libx11-6 (= 2:1.8.6-1), libx11-data (= 2:1.8.6-1), libxau6 (= 1:1.0.9-1), libxaw7 (= 2:1.0.14-1), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.4-1+b1), libxi6 (= 2:1.8-1+b1), libxml2 (= 2.9.14+dfsg-1.3), libxmu6 (= 2:1.1.3-3), libxpm4 (= 1:3.5.12-1.1), libxrender1 (= 1:0.9.10-1.1), libxt6 (= 1:1.2.1-1.1), libzstd1 (= 1.5.5+dfsg2-1), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 6.4.11-1), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-3), make (= 4.3-4.1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230808-1), media-types (= 10.1.0), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), patch (= 2.7.6-7), perl (= 5.36.0-8), perl-base (= 5.36.0-8), perl-modules-5.36 (= 5.36.0-8), pkg-config (= 1.8.1-1), pkgconf (= 1.8.1-1), pkgconf-bin (= 1.8.1-1), po-debconf (= 1.0.21+nmu1), preview-latex-style (= 12.2-1), python3 (= 3.11.4-5+b1), python3-minimal (= 3.11.4-5+b1), python3.11 (= 3.11.5-1), python3.11-minimal (= 3.11.5-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1), t1utils (= 1.41-4), tar (= 1.34+dfsg-1.2), tex-common (= 6.18), texlive-base (= 2022.20230122-3), texlive-binaries (= 2022.20220321.62855-8), texlive-fonts-recommended (= 2022.20230122-3), texlive-latex-base (= 2022.20230122-3), texlive-latex-extra (= 2022.20230122-4), texlive-latex-recommended (= 2022.20230122-3), texlive-pictures (= 2022.20230122-3), tzdata (= 2023c-10), ucf (= 3.0043+nmu1), usrmerge (= 35), util-linux (= 2.39.2-1), x11-common (= 1:7.7+23), xdg-utils (= 1.1.3-4.1), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1645438977" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ probabel-dbgsym_0.5.0+dfsg-6_amd64.deb -------------------------------------- new Debian package, version 2.0. size 7882040 bytes: control archive=692 bytes. 467 bytes, 12 lines control 403 bytes, 4 lines md5sums Package: probabel-dbgsym Source: probabel Version: 0.5.0+dfsg-6 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 8065 Depends: probabel (= 0.5.0+dfsg-6) Section: debug Priority: optional Description: debug symbols for probabel Build-Ids: 009237bcee5ad4a59afe93fe514629db92a576ae 6f34cfc10472aaf13640a7f92702a9cdf95003f6 9751b11c9a361190c83c220ec3511884cbb7bfbc drwxr-xr-x root/root 0 2022-02-21 10:22 ./ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/lib/debug/.build-id/00/ -rw-r--r-- root/root 1847424 2022-02-21 10:22 ./usr/lib/debug/.build-id/00/9237bcee5ad4a59afe93fe514629db92a576ae.debug drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/lib/debug/.build-id/6f/ -rw-r--r-- root/root 2266064 2022-02-21 10:22 ./usr/lib/debug/.build-id/6f/34cfc10472aaf13640a7f92702a9cdf95003f6.debug drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/lib/debug/.build-id/97/ -rw-r--r-- root/root 1847400 2022-02-21 10:22 ./usr/lib/debug/.build-id/97/51b11c9a361190c83c220ec3511884cbb7bfbc.debug drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 2281152 2022-02-21 10:22 ./usr/lib/debug/.dwz/x86_64-linux-gnu/probabel.debug drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/share/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-02-21 10:22 ./usr/share/doc/probabel-dbgsym -> probabel probabel_0.5.0+dfsg-6_amd64.deb ------------------------------- new Debian package, version 2.0. size 602480 bytes: control archive=1552 bytes. 25 bytes, 1 lines conffiles 610 bytes, 14 lines control 2081 bytes, 30 lines md5sums Package: probabel Version: 0.5.0+dfsg-6 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1913 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1) Recommends: perl:any Section: science Priority: optional Homepage: http://www.genabel.org Description: Toolset for Genome-Wide Association Analysis The ProbABEL package is part of the GenABEL project for analysis of genome-wide data. ProbABEL is used to run GWAS. Using files in filevector/DatABEL format even allows for running GWAS on computers with only a few GB of RAM. drwxr-xr-x root/root 0 2022-02-21 10:22 ./ drwxr-xr-x root/root 0 2022-02-21 10:22 ./etc/ -rw-r--r-- root/root 1606 2022-02-21 10:22 ./etc/probabel_config.cfg drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/bin/ -rwxr-xr-x root/root 531480 2022-02-21 10:22 ./usr/bin/pacoxph -rwxr-xr-x root/root 494616 2022-02-21 10:22 ./usr/bin/palinear -rwxr-xr-x root/root 494616 2022-02-21 10:22 ./usr/bin/palogist -rwxr-xr-x root/root 12314 2022-02-21 10:22 ./usr/bin/probabel lrwxrwxrwx root/root 0 2022-02-21 10:22 ./usr/bin/probabel.pl -> probabel drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/share/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/share/doc-base/ -rw-r--r-- root/root 306 2022-02-21 10:22 ./usr/share/doc-base/probabel.probabel-manual drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/share/doc/probabel/ -rw-r--r-- root/root 345003 2022-02-21 10:22 ./usr/share/doc/probabel/ProbABEL_manual.pdf.gz -rw-r--r-- root/root 17451 2022-02-21 10:22 ./usr/share/doc/probabel/ProbABEL_manual.tex.gz -rw-r--r-- root/root 373 2016-05-04 20:48 ./usr/share/doc/probabel/QuickStart.txt -rw-r--r-- root/root 835 2022-02-21 10:22 ./usr/share/doc/probabel/README.Debian -rw-r--r-- root/root 527 2016-05-04 20:48 ./usr/share/doc/probabel/README.dox -rw-r--r-- root/root 1725 2016-05-04 20:48 ./usr/share/doc/probabel/README.org -rw-r--r-- root/root 548 2022-02-21 10:22 ./usr/share/doc/probabel/README.source -rw-r--r-- root/root 278 2022-02-21 10:22 ./usr/share/doc/probabel/README.test -rw-r--r-- root/root 86 2022-02-21 10:22 ./usr/share/doc/probabel/TODO -rw-r--r-- root/root 800 2022-02-21 10:22 ./usr/share/doc/probabel/changelog.Debian.gz -rw-r--r-- root/root 8489 2016-05-04 20:48 ./usr/share/doc/probabel/changelog.gz -rw-r--r-- root/root 3826 2022-02-21 10:22 ./usr/share/doc/probabel/copyright -rw-r--r-- root/root 527 2022-02-21 10:22 ./usr/share/doc/probabel/short_coxph_data.txt -rw-r--r-- root/root 465 2022-02-21 10:22 ./usr/share/doc/probabel/short_height.txt -rw-r--r-- root/root 308 2022-02-21 10:22 ./usr/share/doc/probabel/short_height_base_add.out.txt.save -rw-r--r-- root/root 508 2022-02-21 10:22 ./usr/share/doc/probabel/short_logist_data.txt -rw-r--r-- root/root 498 2022-02-21 10:22 ./usr/share/doc/probabel/short_test.mldose -rw-r--r-- root/root 121 2022-02-21 10:22 ./usr/share/doc/probabel/test.map -rw-r--r-- root/root 244 2022-02-21 10:22 ./usr/share/doc/probabel/test.mlinfo -rw-r--r-- root/root 1451 2022-02-21 10:22 ./usr/share/doc/probabel/test_regression.R drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/share/man/ drwxr-xr-x root/root 0 2022-02-21 10:22 ./usr/share/man/man1/ -rw-r--r-- root/root 1220 2022-02-21 10:22 ./usr/share/man/man1/pacoxph.1.gz -rw-r--r-- root/root 1325 2022-02-21 10:22 ./usr/share/man/man1/palinear.1.gz -rw-r--r-- root/root 1366 2022-02-21 10:22 ./usr/share/man/man1/palogist.1.gz -rw-r--r-- root/root 1391 2022-02-21 10:22 ./usr/share/man/man1/probabel.1.gz -rw-r--r-- root/root 1391 2022-02-21 10:22 ./usr/share/man/man1/probabel.pl.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1445 B] Get:5 copy:/<>/apt_archive ./ Packages [1496 B] Fetched 3556 B in 0s (202 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:amd64 unzip 0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 12.4 MB of archives. After this operation, 50.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.0.10-1 [1382 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20230311 [153 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.65-1 [31.2 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.6-1 [47.3 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.40-1.1 [557 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.40-1.1 [903 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.15.0-1 [2906 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b2 [66.1 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-2+b1 [10.4 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.008-2 [15.9 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b1 [22.9 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:20 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.63-1+b1 [42.8 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.64-2+b1 [121 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.19-2 [91.0 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.81-1 [98.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.57-1 [221 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:29 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b1 [35.3 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.46-1 [13.5 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.29-1 [16.5 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-2+b1 [24.2 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:38 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.37-1 [129 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.58-2 [43.6 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b1 [34.0 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b1 [98.8 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.83-2+b1 [24.2 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b1 [28.3 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 6.44-2 [81.8 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:70 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.92-2+b1 [308 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.083-1 [218 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.11-1 [10.5 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.72-1 [187 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.13-6 [39.0 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:93 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b3 [167 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3 [10.9 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1 [12.3 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b1 [17.1 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1 [11.2 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1 [42.3 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1 [95.4 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1 [97.2 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:106 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.38-1 [58.7 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.29-1 [28.5 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b1 [24.1 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b1 [8396 B] Get:110 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1 [13.0 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-1+b2 [196 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b1 [72.2 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2 [19.9 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.86+ds-1 [32.8 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.10-6 [58.0 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.4 MB in 0s (40.3 MB/s) Selecting previously unselected package netbase. (Reading database ... 40536 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.0.10-1_arm64.deb ... Unpacking openssl (3.0.10-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.65-1_arm64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../004-libassuan0_2.5.6-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.6-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../005-gpgconf_2.2.40-1.1_arm64.deb ... Unpacking gpgconf (2.2.40-1.1) ... Selecting previously unselected package gpg. 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Preparing to unpack .../120-lintian_2.116.3_all.deb ... Unpacking lintian (2.116.3) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:amd64. Preparing to unpack .../121-sbuild-build-depends-lintian-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b2) ... Setting up liblz1:arm64 (1.13-6) ... Setting up libberkeleydb-perl:arm64 (0.64-2+b1) ... Setting up plzip (1.10-6) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... 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Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.27-1) ... Setting up libsyntax-keyword-try-perl (0.29-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.636-1) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.40-1.1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-3) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.10-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.19-2) ... Setting up iso-codes (4.15.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.40-1.1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:arm64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.81-1) ... Setting up libio-socket-ssl-perl (2.083-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.44-2) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.57-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.72-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-7) ... Processing triggers for man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 288080 Build-Time: 859 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 282 Job: probabel_0.5.0+dfsg-6 Lintian: pass Machine Architecture: arm64 Package: probabel Package-Time: 1182 Source-Version: 0.5.0+dfsg-6 Space: 288080 Status: successful Version: 0.5.0+dfsg-6 -------------------------------------------------------------------------------- Finished at 2023-08-26T04:21:13Z Build needed 00:19:42, 288080k disk space