sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | probalign 1.4-8 (arm64) Mon, 18 May 2020 00:13:42 +0000 | +==============================================================================+ Package: probalign Version: 1.4-8 Source Version: 1.4-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-6e55eab1-48a8-417c-886a-23049fe4b786' with '<>' I: NOTICE: Log filtering will replace 'build/probalign-5XIDyI/resolver-NeJWEw' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-05-17-0805.01.pdiff [11.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-05-17-1400.37.pdiff [18.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-05-17-2000.12.pdiff [21.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-05-17-0805.01.pdiff [20.7 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-05-17-1400.37.pdiff [16.6 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-05-17-2000.12.pdiff [21.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-05-17-2000.12.pdiff [21.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-05-17-2000.12.pdiff [21.1 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8072 kB] Fetched 8384 kB in 2s (5272 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libperl5.30 libsystemd0 libudev1 perl perl-base perl-modules-5.30 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 9222 kB of archives. After this operation, 59.4 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.2-1 [2806 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.2-1 [4024 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.2-1 [290 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 perl-base amd64 5.30.2-1 [1574 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libsystemd0 amd64 245.5-3 [360 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libudev1 amd64 245.5-3 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9222 kB in 0s (113 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12640 files and directories currently installed.) Preparing to unpack .../perl_5.30.2-1_amd64.deb ... Unpacking perl (5.30.2-1) over (5.30.0-10) ... Preparing to unpack .../perl-modules-5.30_5.30.2-1_all.deb ... Unpacking perl-modules-5.30 (5.30.2-1) over (5.30.0-10) ... Preparing to unpack .../libperl5.30_5.30.2-1_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.2-1) over (5.30.0-10) ... Preparing to unpack .../perl-base_5.30.2-1_amd64.deb ... Unpacking perl-base (5.30.2-1) over (5.30.0-10) ... Setting up perl-base (5.30.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12640 files and directories currently installed.) Preparing to unpack .../libsystemd0_245.5-3_amd64.deb ... Unpacking libsystemd0:amd64 (245.5-3) over (245.5-2) ... Setting up libsystemd0:amd64 (245.5-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12640 files and directories currently installed.) Preparing to unpack .../libudev1_245.5-3_amd64.deb ... Unpacking libudev1:amd64 (245.5-3) over (245.5-2) ... Setting up libudev1:amd64 (245.5-3) ... Setting up perl-modules-5.30 (5.30.2-1) ... Setting up libperl5.30:amd64 (5.30.2-1) ... Setting up perl (5.30.2-1) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'probalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probalign.git Please use: git clone https://salsa.debian.org/med-team/probalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.7 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main probalign 1.4-8 (dsc) [1965 B] Get:2 http://debian.oregonstate.edu/debian unstable/main probalign 1.4-8 (tar) [30.1 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main probalign 1.4-8 (diff) [4676 B] Fetched 36.7 kB in 0s (2393 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/probalign-5XIDyI/probalign-1.4' with '<>' I: NOTICE: Log filtering will replace 'build/probalign-5XIDyI' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper (>= 11~), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [497 B] Fetched 1862 B in 0s (73.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 glibc-doc manpages-dev:arm64 libstdc++-9-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 78.7 MB of archives. After this operation, 333 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-10-base arm64 10.1.0-1 [197 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.3.0-12 [196 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0039 [68.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.34-8 [2790 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-8 [2631 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-12 [1701 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-12 [10.7 MB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.3.0-8cross1 [197 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.3.0-8cross1 [6544 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-8cross1 [192 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10-20200418-1cross1 [192 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.30-2cross1 [1246 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 10-20200418-1cross1 [34.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 10-20200418-1cross1 [87.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 10-20200418-1cross1 [22.9 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 10-20200418-1cross1 [8608 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.3.0-8cross1 [347 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 10-20200418-1cross1 [125 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 10-20200418-1cross1 [285 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 10-20200418-1cross1 [408 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 10-20200418-1cross1 [122 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.3.0-8cross1 [887 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.3.0-8cross1 [6922 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.4.19-1cross1 [1153 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.30-2cross1 [2265 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.3.0-8cross1 [1637 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.3.0-8cross1 [7127 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.1 [187 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.0-1 [14.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.2-1 [1343 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.1 [1012 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.15 [181 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 10.1.0-1 [34.7 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.16-1 [90.4 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.30-8 [2468 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.3.0-12 [354 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 10.1.0-1 [9476 B] Get:91 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.6.7-1 [1079 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.16-1 [111 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.30-8 [2281 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 10.1.0-1 [91.0 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 10.1.0-1 [23.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 10.1.0-1 [126 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 10.1.0-1 [293 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 10.1.0-1 [450 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 10.1.0-1 [123 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.3.0-12 [886 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.3.0-12 [1659 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.7 MB in 1s (103 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12640 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... 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Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.64.2-1) ... No schema files found: doing nothing. Setting up gcc-9-aarch64-linux-gnu-base:amd64 (9.3.0-8cross1) ... Setting up libdebhelper-perl (13.1) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:arm64 (5.6.7-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up binutils-aarch64-linux-gnu (2.34-8) ... Setting up cpp-9-aarch64-linux-gnu (9.3.0-8cross1) ... Setting up file (1:5.38-5) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:arm64 (10.1.0-1) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libc6-arm64-cross (2.30-2cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.3.0-8cross1) ... Setting up gcc-10-cross-base (10-20200418-1cross1) ... Setting up linux-libc-dev-arm64-cross (5.4.19-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:arm64 (9.3.0-12) ... Setting up libgcc-s1-arm64-cross (10-20200418-1cross1) ... Setting up libatomic1-arm64-cross (10-20200418-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up liblsan0-arm64-cross (10-20200418-1cross1) ... Setting up libgomp1-arm64-cross (10-20200418-1cross1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-12) ... Setting up libtool (2.4.6-14) ... Setting up libtsan0-arm64-cross (10-20200418-1cross1) ... Setting up m4 (1.4.18-4) ... Setting up libc6-dev-arm64-cross (2.30-2cross1) ... Setting up libasan5-arm64-cross (9.3.0-8cross1) ... Setting up libstdc++6-arm64-cross (10-20200418-1cross1) ... Setting up help2man (1.47.15) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (10-20200418-1cross1) ... Setting up ucf (3.0039) ... Setting up g++-9 (9.3.0-12) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libubsan1-arm64-cross (10-20200418-1cross1) ... Setting up libgcc-9-dev-arm64-cross (9.3.0-8cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-9-aarch64-linux-gnu (9.3.0-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-arm64-cross (9.3.0-8cross1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-aarch64-linux-gnu (9.3.0-8cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libcrypt1:arm64 (1:4.4.16-1) ... Setting up libgcc-s1:arm64 (10.1.0-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:arm64 (2.30-8) ... Setting up libcrypt-dev:arm64 (1:4.4.16-1) ... Setting up libc6-dev:arm64 (2.30-8) ... Setting up libstdc++6:arm64 (10.1.0-1) ... Setting up liblsan0:arm64 (10.1.0-1) ... Setting up libitm1:arm64 (10.1.0-1) ... Setting up libtsan0:arm64 (10.1.0-1) ... Setting up debhelper (13.1) ... Setting up libgomp1:arm64 (10.1.0-1) ... Setting up libasan5:arm64 (9.3.0-12) ... Setting up libatomic1:arm64 (10.1.0-1) ... Setting up libubsan1:arm64 (10.1.0-1) ... Setting up libgcc-9-dev:arm64 (9.3.0-12) ... Setting up libstdc++-9-dev:arm64 (9.3.0-12) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-8 dpkg-dev_1.19.7 g++-9_9.3.0-12 gcc-9_9.3.0-12 libc6-dev_2.30-8 libstdc++-9-dev_9.3.0-12 libstdc++-9-dev-arm64-cross_9.3.0-8cross1 libstdc++6_10.1.0-1 libstdc++6-arm64-cross_10-20200418-1cross1 linux-libc-dev_5.6.7-1 Package versions: adduser_3.118 apt_2.1.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: probalign Binary: probalign Architecture: any Version: 1.4-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://probalign.njit.edu/standalone.html Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/probalign Vcs-Git: https://salsa.debian.org/med-team/probalign.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), help2man Package-List: probalign deb science optional arch=any Checksums-Sha1: b03b52e084da024780dfe051213c11e664592aeb 30060 probalign_1.4.orig.tar.gz 5403a35d9956ef3bd8491c020b7583ad051c684d 4676 probalign_1.4-8.debian.tar.xz Checksums-Sha256: b221a27c5cbc3e5c707b0514c71301806074a2bf54047b57bd2d40497b663c29 30060 probalign_1.4.orig.tar.gz a2377431e484fcb0956386b93cb16c678a94b488c16992229db0de8677fcd7c3 4676 probalign_1.4-8.debian.tar.xz Files: 255d6ab775867a54d3727764b8dff561 30060 probalign_1.4.orig.tar.gz 2887241bf5e380060124f94aacb78947 4676 probalign_1.4-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvR1GwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG3MA/+LiZRDDhT7o2U9GoVOdUaEpnWflWns8wL l3tTcCTcF0mlgEFxvSx9RQOMG6UgI3rKPWmaTXQ7JRqr9OmifNTw1WBGUTVK8cax Vuk3hsvjyt1Ais33/xr+WRD0/ob9QycXdQvfdLNj26KBtUxUozgYIDX1o/bnrQsM lTh8oQWkNcPPzAs0R5ilR4kMJtL865VXuoG4RFflNDuOe+RdDcNscRkC42RNzd5U mRWJ5evA2MSxg2F6jb8xXLYvdkwB7+dfiI8BrdBf2kvE3c9Ekl7qHtIFnHOAt6Wq HiFeP1PB6qyXi02l4znfBeASk5qUSK/IbYwesx9Egfe3EbxFKUfoVN40FGSKFQpJ yvQGTRkZVbZgYuLLn/Esf0WrGqt4LX8d2wwoxd3iFJxkK5hu06iqw2l3fyRJvm4s OFtL+FRAHcsvvgk/O7eLjtEJ+CbbpjMDQSGOKslqSuwndexrPleGLjaluHiCIqwA 6O/LVkRdVdIGGIRnf6WDM44j8AM4d97jO5Br1omGPjyD8kzJ7sUlToUd/F99rhwV cJPhYqBm8Y6+4rseV6mfxQTvFJ/I7aruxITvvI428RGewCtTuJgIDOgG83WS43Yn mvTz2/AMgkPQ6gNUSPxsGhimQ2LXfFAzF+lPJ6F4G2k2ATtkS0BUrVU8gDtMRx7c 2R1fL/+mc0o= =EqZi -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 25 14:34:20 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./probalign_1.4-8.dsc dpkg-source: info: extracting probalign in /<> dpkg-source: info: unpacking probalign_1.4.orig.tar.gz dpkg-source: info: unpacking probalign_1.4-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc_fixes.patch dpkg-source: info: applying fix-gcc-4.6.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying mayhem.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-6e55eab1-48a8-417c-886a-23049fe4b786 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package probalign dpkg-buildpackage: info: source version 1.4-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f probalign make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc make[1]: Entering directory '/<>' aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -W -Wall -funroll-loops -lm -o probalign Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, from Main.cc:9: Sequence.h: In member function ‘Sequence* Sequence::Clone() const’: Sequence.h:293:21: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Main.cc:8: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = char]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ PostProbs.cc: In function ‘VF* revers_partf(long double**, float, float, float)’: PostProbs.cc:312:17: warning: variable ‘zz’ set but not used [-Wunused-but-set-variable] 312 | long double zz = 0; | ^~ PostProbs.cc: In function ‘VF* ComputePostProbs(int, int, std::string, std::string)’: PostProbs.cc:892:9: warning: variable ‘stock_loop’ set but not used [-Wunused-but-set-variable] 892 | int stock_loop = 1; | ^~~~~~~~~~ In file included from MultiSequence.h:18, from ComputeAlignment.cc:12: Sequence.h: In member function ‘Sequence* Sequence::Clone() const’: Sequence.h:293:21: warning: implicitly-declared ‘SafeVector& SafeVector::operator=(const SafeVector&)’ is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from ComputeAlignment.cc:10: SafeVector.h:29:3: note: because ‘SafeVector’ has user-provided ‘SafeVector::SafeVector(const SafeVector&) [with TYPE = char]’ 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' help2man --name="Align sequences in MFAFILE(s) and print result to standard output" \ --no-discard-stderr \ --version-string=1.4 \ --help-option=" " \ --no-info \ /<>/probalign > /<>/debian/probalign/usr/share/man/man1/probalign.1 make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'probalign' in '../probalign_1.4-8_arm64.deb'. dpkg-deb: building package 'probalign-dbgsym' in '../probalign-dbgsym_1.4-8_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../probalign_1.4-8_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-05-18T00:14:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ probalign_1.4-8_arm64.changes: ------------------------------ Format: 1.8 Date: Tue, 23 Oct 2018 19:16:37 +0200 Source: probalign Binary: probalign probalign-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 1.4-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: probalign - multiple sequence alignment using partition function posterior pr Changes: probalign (1.4-8) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: 1a58122a34a045a8b52bc8aa532cd6ff96453acd 574056 probalign-dbgsym_1.4-8_arm64.deb 82acfd95497f591a9cc7a3870a0a32bac0231165 4592 probalign_1.4-8_arm64.buildinfo 7492c6361f8b472fc7210ea4b1e4a1be41c6f77e 62760 probalign_1.4-8_arm64.deb Checksums-Sha256: ffda17702aafba3435209179414d7aaf17d9a091a19f918b61ad220206534480 574056 probalign-dbgsym_1.4-8_arm64.deb 6cac2a5fd3466ba68c99f17f0025a9d29cc921212c495ac2f040db31d6b5d389 4592 probalign_1.4-8_arm64.buildinfo c9aff116e17b687f053bff120a0c21caef00f08224548358fca62c0b54d166d3 62760 probalign_1.4-8_arm64.deb Files: 2e96b29383fd95aa47c32c781fcb260d 574056 debug optional probalign-dbgsym_1.4-8_arm64.deb 3480dcccb12fba3804c9f481b4a9e4c1 4592 science optional probalign_1.4-8_arm64.buildinfo d32a5b3099d88be601d442f85115947e 62760 science optional probalign_1.4-8_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: probalign Binary: probalign Architecture: arm64 Version: 1.4-8 Checksums-Md5: 2e96b29383fd95aa47c32c781fcb260d 574056 probalign-dbgsym_1.4-8_arm64.deb d32a5b3099d88be601d442f85115947e 62760 probalign_1.4-8_arm64.deb Checksums-Sha1: 1a58122a34a045a8b52bc8aa532cd6ff96453acd 574056 probalign-dbgsym_1.4-8_arm64.deb 7492c6361f8b472fc7210ea4b1e4a1be41c6f77e 62760 probalign_1.4-8_arm64.deb Checksums-Sha256: ffda17702aafba3435209179414d7aaf17d9a091a19f918b61ad220206534480 574056 probalign-dbgsym_1.4-8_arm64.deb c9aff116e17b687f053bff120a0c21caef00f08224548358fca62c0b54d166d3 62760 probalign_1.4-8_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 18 May 2020 00:14:27 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-8), binutils-common (= 2.34-8), binutils-x86-64-linux-gnu (= 2.34-8), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.35.1-5), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-12), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-12), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10.1.0-1), gcc-9 (= 9.3.0-12), gcc-9-base (= 9.3.0-12), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), help2man (= 1.47.15), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-12), libatomic1 (= 10.1.0-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34-8), libblkid1 (= 2.35.1-5), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.30-8), libc-dev-bin (= 2.30-8), libc6 (= 2.30-8), libc6-dev (= 2.30-8), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10.1.0-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34-8), libctf0 (= 2.34-8), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.252), libdebhelper-perl (= 13.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.0-1), libgcc-9-dev (= 9.3.0-12), libgcc-s1 (= 10.1.0-1), libgcc1 (= 1:10.1.0-1), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.2-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10.1.0-1), libgpg-error0 (= 1.37-1), libicu63 (= 63.2-3), libisl22 (= 0.22.1-1), libitm1 (= 10.1.0-1), liblocale-gettext-perl (= 1.07-4), liblsan0 (= 10.1.0-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.35.1-5), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.2-1), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10.1.0-1), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.0-1+b3), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.35.1-5), libstdc++-9-dev (= 9.3.0-12), libstdc++6 (= 10.1.0-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.5-3), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.1.0-1), libubsan1 (= 10.1.0-1), libuchardet0 (= 0.0.6-3), libudev1 (= 245.5-3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.35.1-5), libxml2 (= 2.9.10+dfsg-5), linux-libc-dev (= 5.6.7-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-2+b1), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.2-1), perl-base (= 5.30.2-1), perl-modules-5.30 (= 5.30.2-1), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.35.1-5), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1540314997" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ probalign-dbgsym_1.4-8_arm64.deb -------------------------------- new Debian package, version 2.0. size 574056 bytes: control archive=532 bytes. 374 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: probalign-dbgsym Source: probalign Version: 1.4-8 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 588 Depends: probalign (= 1.4-8) Section: debug Priority: optional Description: debug symbols for probalign Build-Ids: 52b0237c704f664b5f774614cb837ecccc83b488 drwxr-xr-x root/root 0 2018-10-23 17:16 ./ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/lib/debug/.build-id/52/ -rw-r--r-- root/root 591464 2018-10-23 17:16 ./usr/lib/debug/.build-id/52/b0237c704f664b5f774614cb837ecccc83b488.debug drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/share/ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-10-23 17:16 ./usr/share/doc/probalign-dbgsym -> probalign probalign_1.4-8_arm64.deb ------------------------- new Debian package, version 2.0. size 62760 bytes: control archive=1160 bytes. 1060 bytes, 20 lines control 621 bytes, 9 lines md5sums Package: probalign Version: 1.4-8 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 151 Depends: libc6 (>= 2.27), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://probalign.njit.edu/standalone.html Description: multiple sequence alignment using partition function posterior probabilities Probalign uses partition function posterior probability estimates to compute maximum expected accuracy multiple sequence alignments. It performs statistically significantly better than the leading alignment programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0, HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On heteregeneous length datasets containing repeats Probalign alignment accuracy is 10% and 15% higher than the other three methods when standard deviation of length is at least 300 and 400. drwxr-xr-x root/root 0 2018-10-23 17:16 ./ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/bin/ -rwxr-xr-x root/root 134568 2018-10-23 17:16 ./usr/bin/probalign drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/share/ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/share/doc/probalign/ -rw-r--r-- root/root 2679 2010-11-23 17:11 ./usr/share/doc/probalign/README -rw-r--r-- root/root 262 2018-10-23 17:16 ./usr/share/doc/probalign/README.test -rw-r--r-- root/root 875 2018-10-23 17:16 ./usr/share/doc/probalign/changelog.Debian.gz -rw-r--r-- root/root 983 2018-10-23 17:16 ./usr/share/doc/probalign/copyright -rw-r--r-- root/root 365 2018-10-23 17:16 ./usr/share/doc/probalign/run-unit-test -rw-r--r-- root/root 531 2018-10-23 17:16 ./usr/share/doc/probalign/test_data_n.fas -rw-r--r-- root/root 453 2018-10-23 17:16 ./usr/share/doc/probalign/test_data_p.fas drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-23 17:16 ./usr/share/man/man1/ -rw-r--r-- root/root 267 2018-10-23 17:16 ./usr/share/man/man1/probalign.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [538 B] Get:5 copy:/<>/apt_archive ./ Packages [624 B] Fetched 2125 B in 0s (78.8 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: libclass-xsaccessor-perl : Depends: perl (< 5.30.1~) but 5.30.2-1 is to be installed E: Error, pkgProblemResolver::Resolve generated breaks, this may be caused by held packages. apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 4148 Build-Time: 17 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 18 Job: probalign_1.4-8 Lintian: error Machine Architecture: amd64 Package: probalign Package-Time: 46 Source-Version: 1.4-8 Space: 4148 Status: successful Version: 1.4-8 -------------------------------------------------------------------------------- Finished at 2020-05-18T00:14:28Z Build needed 00:00:46, 4148k disk space