sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | proftmb 1.1.12-11 (arm64) Sat, 27 Jan 2024 05:03:43 +0000 | +==============================================================================+ Package: proftmb Version: 1.1.12-11 Source Version: 1.1.12-11 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-a2aa67df-0ad0-4c12-8bb2-e07def99e367' with '<>' I: NOTICE: Log filtering will replace 'build/proftmb-HcHueM/resolver-6gtf9O' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-27-0225.24-F-2024-01-27-0225.24.pdiff [12.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-27-0225.24-F-2024-01-27-0225.24.pdiff [10.2 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-27-0225.24-F-2024-01-27-0225.24.pdiff [12.3 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9561 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-27-0225.24-F-2024-01-27-0225.24.pdiff [10.2 kB] Fetched 9908 kB in 2s (4563 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'proftmb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proftmb.git Please use: git clone https://salsa.debian.org/med-team/proftmb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 429 kB of source archives. Get:1 http://localhost:3142/debian sid/main proftmb 1.1.12-11 (dsc) [2018 B] Get:2 http://localhost:3142/debian sid/main proftmb 1.1.12-11 (tar) [420 kB] Get:3 http://localhost:3142/debian sid/main proftmb 1.1.12-11 (diff) [6940 B] Fetched 429 kB in 1s (420 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/proftmb-HcHueM/proftmb-1.1.12' with '<>' I: NOTICE: Log filtering will replace 'build/proftmb-HcHueM' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, libgsl-dev, opt, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), help2man, libgsl-dev, opt, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [752 B] Get:5 copy:/<>/apt_archive ./ Packages [795 B] Fetched 2156 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-cross-base gcc-14-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgsl-dev:arm64 libgsl27:arm64 libgslcblas0:arm64 libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross m4 man-db opt:arm64 po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 gsl-ref-psdoc:arm64 | gsl-doc-pdf:arm64 | gsl-doc-info:arm64 | gsl-ref-html:arm64 krb5-doc:arm64 krb5-user:arm64 libstdc++-11-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl krb5-locales:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-cross-base gcc-14-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgsl-dev:arm64 libgsl27:arm64 libgslcblas0:arm64 libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross m4 man-db opt:arm64 po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 101 MB of archives. After this operation, 421 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b1 [15.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.41.90.20240122-1 [3379 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-13-aarch64-linux-gnu-base amd64 13.2.0-7cross2 [41.0 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [9771 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:13.2.0-2 [4164 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.37-12cross1 [1006 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 13.2.0-7cross2 [40.8 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 13.2.0-7cross2 [112 kB] Get:28 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 13.2.0-7cross2 [23.3 kB] Get:29 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 13.2.0-7cross2 [9892 B] Get:30 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 13.2.0-7cross2 [2407 kB] Get:31 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 13.2.0-7cross2 [1068 kB] Get:32 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 13.2.0-7cross2 [2278 kB] Get:33 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g++-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [10.7 MB] Get:43 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:13.2.0-2 [1176 B] Get:44 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:45 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:46 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:50 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:51 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB] Get:52 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:54 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:57 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:58 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.10 [3484 B] Get:60 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.12 [83.7 kB] Get:61 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:62 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:63 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] 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http://localhost:3142/debian sid/main amd64 help2man amd64 1.49.3 [198 kB] Get:76 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 14-20240126-2 [43.7 kB] Get:77 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.37-14 [2315 kB] Get:78 http://localhost:3142/debian sid/main arm64 libasan6 arm64 11.4.0-7 [1951 kB] Get:79 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 14-20240126-2 [9680 B] Get:80 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.36-4 [90.5 kB] Get:81 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-4 [121 kB] Get:82 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20.1-5 [32.5 kB] Get:83 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.47.0-2+b1 [19.9 kB] Get:84 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20.1-5 [79.9 kB] Get:85 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-2+b2 [9296 B] Get:86 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.1.4-2 [1835 kB] Get:87 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-5 [315 kB] Get:88 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-5 [124 kB] Get:89 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.4+ds-1 [77.9 kB] Get:90 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-3 [37.5 kB] Get:91 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.4+ds-1 [192 kB] Get:92 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-3 [66.3 kB] Get:93 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.37-14 [1432 kB] Get:94 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 14-20240126-2 [122 kB] Get:95 http://localhost:3142/debian sid/main arm64 libitm1 arm64 14-20240126-2 [23.6 kB] Get:96 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 14-20240126-2 [1157 kB] Get:97 http://localhost:3142/debian sid/main arm64 libtsan0 arm64 11.4.0-7 [1957 kB] Get:98 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 14-20240126-2 [636 kB] Get:99 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 14-20240126-2 [1035 kB] Get:100 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 14-20240126-2 [1390 kB] Get:101 http://localhost:3142/debian sid/main arm64 libgcc-11-dev arm64 11.4.0-7 [935 kB] Get:102 http://localhost:3142/debian sid/main arm64 libgslcblas0 arm64 2.7.1+dfsg-6 [72.4 kB] Get:103 http://localhost:3142/debian sid/main arm64 libgsl27 arm64 2.7.1+dfsg-6 [822 kB] Get:104 http://localhost:3142/debian sid/main arm64 libgsl-dev arm64 2.7.1+dfsg-6 [1039 kB] Get:105 http://localhost:3142/debian sid/main arm64 libstdc++-11-dev arm64 11.4.0-7 [1942 kB] Get:106 http://localhost:3142/debian sid/main arm64 opt arm64 3.19-3 [68.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 101 MB in 1s (123 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 16262 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-2+b1_amd64.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-14_amd64.deb ... Unpacking gettext-base (0.21-14) ... 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Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up gcc-13-aarch64-linux-gnu-base:amd64 (13.2.0-7cross2) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up libgcc-s1-arm64-cross (13.2.0-7cross2) ... Setting up libatomic1-arm64-cross (13.2.0-7cross2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblsan0-arm64-cross (13.2.0-7cross2) ... Setting up libgomp1-arm64-cross (13.2.0-7cross2) ... Setting up gettext (0.21-14) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up libtool (2.4.7-7) ... Setting up libhwasan0-arm64-cross (13.2.0-7cross2) ... Setting up libc6-dev-arm64-cross (2.37-12cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (13.2.0-7cross2) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:13.2.0-2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libasan8-arm64-cross (13.2.0-7cross2) ... Setting up libtsan2-arm64-cross (13.2.0-7cross2) ... Setting up libubsan1-arm64-cross (13.2.0-7cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-arm64-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.12) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up libstdc++-13-dev-arm64-cross (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-arm64 (12.10) ... Setting up libgcc-s1:arm64 (14-20240126-2) ... Setting up libc6:arm64 (2.37-14) ... Setting up libhwasan0:arm64 (14-20240126-2) ... Setting up libstdc++6:arm64 (14-20240126-2) ... Setting up liblsan0:arm64 (14-20240126-2) ... Setting up libitm1:arm64 (14-20240126-2) ... Setting up libtsan0:arm64 (11.4.0-7) ... Setting up libkeyutils1:arm64 (1.6.3-2+b2) ... Setting up libgslcblas0:arm64 (2.7.1+dfsg-6) ... Setting up libssl3:arm64 (3.1.4-2) ... Setting up libgsl27:arm64 (2.7.1+dfsg-6) ... Setting up libcrypt1:arm64 (1:4.4.36-4) ... Setting up libcom-err2:arm64 (1.47.0-2+b1) ... Setting up libgomp1:arm64 (14-20240126-2) ... Setting up libasan6:arm64 (11.4.0-7) ... Setting up libkrb5support0:arm64 (1.20.1-5) ... Setting up libatomic1:arm64 (14-20240126-2) ... Setting up libk5crypto3:arm64 (1.20.1-5) ... Setting up libubsan1:arm64 (14-20240126-2) ... Setting up libgcc-11-dev:arm64 (11.4.0-7) ... Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... Setting up libkrb5-3:arm64 (1.20.1-5) ... Setting up libgsl-dev:arm64 (2.7.1+dfsg-6) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-5) ... Setting up libtirpc3:arm64 (1.3.4+ds-1) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1) ... Setting up libnsl2:arm64 (1.3.0-3) ... Setting up libnsl-dev:arm64 (1.3.0-3) ... Setting up libc6-dev:arm64 (2.37-14) ... Setting up libstdc++-11-dev:arm64 (11.4.0-7) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-14) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.90.20240122-1 dpkg-dev_1.22.4 g++-11_11.4.0-7 g++-13_13.2.0-10 gcc-11_11.4.0-7 gcc-13_13.2.0-10 libc6-dev_2.37-14 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-10 libstdc++-13-dev-arm64-cross_13.2.0-7cross2 libstdc++6_14-20240126-2 libstdc++6-arm64-cross_13.2.0-7cross2 linux-libc-dev_6.6.13-1 Package versions: adduser_3.137 apt_2.7.10 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.90.20240122-1 binutils-aarch64-linux-gnu_2.41.90.20240122-1 binutils-common_2.41.90.20240122-1 binutils-x86-64-linux-gnu_2.41.90.20240122-1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-10 cpp-13-aarch64-linux-gnu_13.2.0-7cross2 cpp-aarch64-linux-gnu_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-arm64_12.10 dash_0.5.12-6 debconf_1.5.85 debhelper_13.12 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.4 dpkg-cross_2.6.20 dpkg-dev_1.22.4 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.33-1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-10 g++-13-aarch64-linux-gnu_13.2.0-7cross2 g++-aarch64-linux-gnu_4:13.2.0-2 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-14 gcc-13_13.2.0-10 gcc-13-aarch64-linux-gnu_13.2.0-7cross2 gcc-13-aarch64-linux-gnu-base_13.2.0-7cross2 gcc-13-base_13.2.0-10 gcc-13-cross-base_13.2.0-7cross2 gcc-14-base_14-20240126-2 gcc-9-base_9.5.0-4 gcc-aarch64-linux-gnu_4:13.2.0-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 help2man_1.49.3 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0_2.7.10 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_14-20240126-2 libasan8-arm64-cross_13.2.0-7cross2 libatomic1_14-20240126-2 libatomic1-arm64-cross_13.2.0-7cross2 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbinutils_2.41.90.20240122-1 libblkid1_2.39.3-6 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-14 libc-dev-bin_2.37-14 libc6_2.37-14 libc6-arm64-cross_2.37-12cross1 libc6-dev_2.37-14 libc6-dev-arm64-cross_2.37-12cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4+b2 libcc1-0_14-20240126-2 libcom-err2_1.47.0-2+b1 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libhwasan0_14-20240126-2 libhwasan0-arm64-cross_13.2.0-7cross2 libicu72_72.1-4 libidn2-0_2.3.4-1+b2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240126-2 libitm1-arm64-cross_13.2.0-7cross2 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2+b2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 liblocale-gettext-perl_1.07-6+b1 liblsan0_14-20240126-2 liblsan0-arm64-cross_13.2.0-7cross2 liblz4-1_1.9.4-1+b2 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2+b1 libmagic1_1:5.45-2+b1 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1 libnettle8_3.9.1-2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-modules_1.5.2-9.1+b1 libpam-modules-bin_1.5.2-9.1+b1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1+b1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1+b2 libquadmath0_14-20240126-2 libseccomp2_2.5.5-1 libselinux1_3.5-2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b2 libsepol2_3.5-2 libsframe1_2.41.90.20240122-1 libsmartcols1_2.39.3-6 libss2_1.47.0-2+b1 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-10 libstdc++-13-dev-arm64-cross_13.2.0-7cross2 libstdc++6_14-20240126-2 libstdc++6-arm64-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255.3-1 libtasn1-6_4.19.0-3+b2 libtext-glob-perl_0.11-3 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_14-20240126-2 libtsan2-arm64-cross_13.2.0-7cross2 libubsan1_14-20240126-2 libubsan1-arm64-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255.3-1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.13-1 linux-libc-dev-arm64-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3+b1 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20240123-1 mount_2.39.3-6 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 opt_3.19-3 passwd_1:4.13+dfsg1-3+b1 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.34_5.34.0-5 perl-modules-5.38_5.38.2-3 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sysvinit-utils_3.08-6 tar_1.35+dfsg-3 tzdata_2023d-1 ucf_3.0043+nmu1 usrmerge_39 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: proftmb Binary: proftmb Architecture: any Version: 1.1.12-11 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/proftmb Vcs-Git: https://salsa.debian.org/med-team/proftmb.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, libgsl-dev, opt, debhelper Package-List: proftmb deb science optional arch=any Checksums-Sha1: 79c9e839a73b96958c9393bfaf864964e211c2e3 419748 proftmb_1.1.12.orig.tar.gz c59cb9dcd82e25be1a8a01fec316add24532240e 6940 proftmb_1.1.12-11.debian.tar.xz Checksums-Sha256: ec444d2efad9f590de69dfff40f9900f41329f71813c85ab1005297b8c3e98f4 419748 proftmb_1.1.12.orig.tar.gz 43683c0d43e0c8f3496baf5db5d571a89ee614c21930fae0f3a2663afcf707fe 6940 proftmb_1.1.12-11.debian.tar.xz Files: 2e915f466148cc09eb91f77ecc02a6c6 419748 proftmb_1.1.12.orig.tar.gz 280c3b062342975bb4d635c5d7d2dbb0 6940 proftmb_1.1.12-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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No public key dpkg-source: warning: cannot verify inline signature for ./proftmb_1.1.12-11.dsc: no acceptable signature found dpkg-source: info: extracting proftmb in /<> dpkg-source: info: unpacking proftmb_1.1.12.orig.tar.gz dpkg-source: info: unpacking proftmb_1.1.12-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid-dnl-in-makefiles.diff dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying gcc-11.patch dpkg-source: info: applying no_pp-popcon.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.w42wbEhstx/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-a2aa67df-0ad0-4c12-8bb2-e07def99e367 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package proftmb dpkg-buildpackage: info: source version 1.1.12-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:9: installing './compile' configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to enable C11 features... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-gcc... none checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking for aarch64-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of aarch64-linux-gnu-g++... none checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for main in -lopt... yes checking for main in -lm... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for gsl/gsl_errno.h... yes checking for opt.h... yes checking for an ANSI C-conforming const... yes checking for --enable-debug... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating examples/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' Making all in src make[3]: Entering directory '/<>/src' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o proftmb.o proftmb.cpp In file included from proftmb.cpp:18: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 21 | void DisplayArch(ostream&,Par&,uint,char* =""); | ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 24 | void PrintEmit(ostream&,Par&,uint,char* =""); | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Backward.o Backward.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o BaumWelch.o BaumWelch.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Eval.o Eval.cpp Eval.cpp: In function ‘std::pair CalcAccCovFromZ(double&)’: Eval.cpp:573:52: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 573 | pair CalcAccCovFromZ(double& zscore){ | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ExpectA.o ExpectA.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ExpectC.o ExpectC.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Forward.o Forward.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o GradientDescent.o GradientDescent.cpp GradientDescent.cpp: In member function ‘std::pair Par::Update(std::vector&, std::set >&)’: GradientDescent.cpp:329:77: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 329 | pair Par::Update(vector& tsq, set& exclude){ | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o HMMEval.o HMMEval.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o HMMOutput.o HMMOutput.cpp In file included from HMMOutput.cpp:1: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 21 | void DisplayArch(ostream&,Par&,uint,char* =""); | ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 24 | void PrintEmit(ostream&,Par&,uint,char* =""); | ^ HMMOutput.cpp: In function ‘void PrintRdb(std::ostream&, Seq&, bool, bool)’: HMMOutput.cpp:58:62: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 58 | pair ac = CalcAccCovFromZ(S.scl.Score); | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o HTools.o HTools.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Krogh1Best.o Krogh1Best.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Load.o Load.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Output.o Output.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Par.o Par.cpp In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:64, from /usr/aarch64-linux-gnu/include/c++/13/string:51, from structs.h:4, from Par.h:4, from Par.cpp:1: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]’: Par.cpp:250:22: required from here /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Params.o Params.cpp In file included from Params.cpp:2: Serialize.h: In function ‘void StoreVector(std::ofstream&, std::vector&, T, M1, M2) [with T = std::pair; M1 = double; M2 = double]’: Serialize.h:28:6: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 28 | void StoreVector(ofstream& of, vector& D, T dummy1, M1 dummy2, M2 dummy3){ | ^~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Posterior.o Posterior.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Regularization.o Regularization.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Seq.o Seq.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Sov.o Sov.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o structs.o structs.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Tally.o Tally.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Tools.o Tools.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o TrainSeq.o TrainSeq.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Viterbi.o Viterbi.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Zscore.o Zscore.cpp In file included from /usr/aarch64-linux-gnu/include/c++/13/bits/stl_algobase.h:64, from /usr/aarch64-linux-gnu/include/c++/13/vector:62, from Zscore.h:1, from Zscore.cpp:24: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: Zscore.cpp:112:42: required from here /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = pair; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = pair; typename decay<_Tp2>::type = pair]’: Zscore.cpp:112:25: required from here /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair >’ when C++17 is enabled changed to match C++14 in GCC 10.1 Zscore.cpp: In function ‘std::set > > ComputeStats(std::vector&, std::vector&, int)’: Zscore.cpp:112:56: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 112 | stats.insert(make_pair(mean_x,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~ Zscore.cpp:112:39: note: parameter passing for argument of type ‘std::pair >’ when C++17 is enabled changed to match C++14 in GCC 10.1 112 | stats.insert(make_pair(mean_x,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Zscore.cpp:143:56: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 143 | stats.insert(make_pair((double)cur_lo,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~ Zscore.cpp:143:31: note: parameter passing for argument of type ‘std::pair >’ when C++17 is enabled changed to match C++14 in GCC 10.1 143 | stats.insert(make_pair((double)cur_lo,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Zscore.cpp:149:60: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 149 | stats.insert(make_pair((double)max_length,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~ Zscore.cpp:149:31: note: parameter passing for argument of type ‘std::pair >’ when C++17 is enabled changed to match C++14 in GCC 10.1 149 | stats.insert(make_pair((double)max_length,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In function ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&]’: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 922 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h: In function ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = pair]’: /usr/aarch64-linux-gnu/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair >’ when C++17 is enabled changed to match C++14 in GCC 10.1 Zscore.cpp: In function ‘std::set > > ComputeStats(std::vector&, std::vector&, int)’: Zscore.cpp:112:56: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 112 | stats.insert(make_pair(mean_x,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~ Zscore.cpp:143:31: note: parameter passing for argument of type ‘std::pair >’ when C++17 is enabled changed to match C++14 in GCC 10.1 143 | stats.insert(make_pair((double)cur_lo,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Zscore.cpp:143:56: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 143 | stats.insert(make_pair((double)cur_lo,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~ Zscore.cpp:149:31: note: parameter passing for argument of type ‘std::pair >’ when C++17 is enabled changed to match C++14 in GCC 10.1 149 | stats.insert(make_pair((double)max_length,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Zscore.cpp:149:60: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 149 | stats.insert(make_pair((double)max_length,make_pair(mean_y,sd))); | ~~~~~~~~~^~~~~~~~~~~ rm -f libhmm.a ar cru libhmm.a Backward.o BaumWelch.o Eval.o ExpectA.o ExpectC.o Forward.o GradientDescent.o HMMEval.o HMMOutput.o HTools.o Krogh1Best.o Load.o Output.o Par.o Params.o Posterior.o Regularization.o Seq.o Sov.o structs.o Tally.o Tools.o TrainSeq.o Viterbi.o Zscore.o ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-ranlib libhmm.a aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o proftmb proftmb.o libhmm.a -lgsl -lgslcblas -lm -lopt sed -e 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;' < proftmb_example.txt.raw > proftmb_example.txt help2man -n 'per-residue prediction of bacterial transmembrane beta barrels' --output=proftmb.1 --no-info --include=proftmb_example.txt ./proftmb help2man: can't get `--help' info from ./proftmb Try `--no-discard-stderr' if option outputs to stderr make[3]: *** [Makefile:855: proftmb.1] Error 126 make[3]: Leaving directory '/<>/src' make[2]: *** [Makefile:416: all-recursive] Error 1 make[2]: Leaving directory '/<>' make[1]: *** [Makefile:336: all] Error 2 make[1]: Leaving directory '/<>' dh_auto_build: error: make -j1 returned exit code 2 make: *** [debian/rules:8: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-01-27T05:04:55Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 65732 Build-Time: 47 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 13 Job: proftmb_1.1.12-11 Machine Architecture: amd64 Package: proftmb Package-Time: 72 Source-Version: 1.1.12-11 Space: 65732 Status: attempted Version: 1.1.12-11 -------------------------------------------------------------------------------- Finished at 2024-01-27T05:04:55Z Build needed 00:01:12, 65732k disk space