sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley
+==============================================================================+
| proftmb 1.1.12-11 (arm64) Mon, 26 May 2025 09:38:27 +0000 |
+==============================================================================+
Package: proftmb
Version: 1.1.12-11
Source Version: 1.1.12-11
Distribution: unstable
Machine Architecture: amd64
Host Architecture: arm64
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-07442ebd-6c45-433a-b497-87bc7b7034fb' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/proftmb-MvbVAX/resolver-A1h4db' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://localhost:3142/debian unstable InRelease [208 kB]
Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:4 http://localhost:3142/debian unstable/main Sources T-2025-05-26-0805.21-F-2025-05-26-0208.45.pdiff [5359 B]
Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-05-26-0805.21-F-2025-05-26-0208.45.pdiff [6843 B]
Get:4 http://localhost:3142/debian unstable/main Sources T-2025-05-26-0805.21-F-2025-05-26-0208.45.pdiff [5359 B]
Get:6 http://localhost:3142/debian unstable/main arm64 Packages [10.0 MB]
Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-05-26-0805.21-F-2025-05-26-0208.45.pdiff [6843 B]
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Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'proftmb' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/proftmb.git
Please use:
git clone https://salsa.debian.org/med-team/proftmb.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 429 kB of source archives.
Get:1 http://localhost:3142/debian unstable/main proftmb 1.1.12-11 (dsc) [2018 B]
Get:2 http://localhost:3142/debian unstable/main proftmb 1.1.12-11 (tar) [420 kB]
Get:3 http://localhost:3142/debian unstable/main proftmb 1.1.12-11 (diff) [6940 B]
Fetched 429 kB in 1s (688 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/proftmb-MvbVAX/proftmb-1.1.12' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/proftmb-MvbVAX' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), help2man, libgsl-dev, opt, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
Filtered Build-Depends: debhelper-compat (= 13), help2man, libgsl-dev, opt, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [752 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [795 B]
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Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
bsdextrautils cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism
dwz fakeroot file g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu
gcc-14-aarch64-linux-gnu gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64
gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base
help2man intltool-debian libarchive-zip-perl libasan8:arm64
libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64
libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcrypt-dev:arm64
libcrypt1:arm64 libdebhelper-perl libelf1t64 libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev:arm64
libgcc-14-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross
libgomp1:arm64 libgomp1-arm64-cross libgsl-dev:arm64 libgsl28:arm64
libgslcblas0:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libitm1:arm64
libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64
liblsan0-arm64-cross libmagic-mgc libmagic1t64 libpipeline1
libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64
libstdc++6-arm64-cross libtool libtsan2:arm64 libtsan2-arm64-cross
libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5 libxml2
linux-libc-dev-arm64-cross m4 man-db opt:arm64 po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales
cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison
gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
gnulib-l10n groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64
libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 gsl-ref-psdoc:arm64
| gsl-doc-pdf:arm64 | gsl-doc-info:arm64 | gsl-ref-html:arm64
libstdc++-14-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
bsdextrautils cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism
dwz fakeroot file g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu
gcc-14-aarch64-linux-gnu gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64
gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base
help2man intltool-debian libarchive-zip-perl libasan8:arm64
libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64
libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcrypt-dev:arm64
libcrypt1:arm64 libdebhelper-perl libelf1t64 libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev:arm64
libgcc-14-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross
libgomp1:arm64 libgomp1-arm64-cross libgsl-dev:arm64 libgsl28:arm64
libgslcblas0:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libitm1:arm64
libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64
liblsan0-arm64-cross libmagic-mgc libmagic1t64 libpipeline1
libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64
libstdc++6-arm64-cross libtool libtsan2:arm64 libtsan2-arm64-cross
libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5 libxml2
linux-libc-dev-arm64-cross m4 man-db opt:arm64 po-debconf
sbuild-build-depends-main-dummy:arm64 sensible-utils
0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded.
Need to get 91.3 MB of archives.
After this operation, 412 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B]
Get:2 http://localhost:3142/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-8 [1187 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.44-3 [1687 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu-base amd64 14.2.0-19cross1 [49.7 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 cpp-14-aarch64-linux-gnu amd64 14.2.0-19cross1 [11.2 MB]
Get:21 http://localhost:3142/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:14.2.0-1 [4844 B]
Get:22 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libc6-arm64-cross all 2.41-8cross1 [1165 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libgcc-s1-arm64-cross all 14.2.0-19cross1 [54.1 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libgomp1-arm64-cross all 14.2.0-19cross1 [91.7 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libitm1-arm64-cross all 14.2.0-19cross1 [26.0 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libatomic1-arm64-cross all 14.2.0-19cross1 [10.3 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libasan8-arm64-cross all 14.2.0-19cross1 [436 kB]
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Get:30 http://localhost:3142/debian unstable/main amd64 libtsan2-arm64-cross all 14.2.0-19cross1 [416 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libstdc++6-arm64-cross all 14.2.0-19cross1 [546 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libubsan1-arm64-cross all 14.2.0-19cross1 [186 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 libhwasan0-arm64-cross all 14.2.0-19cross1 [256 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-arm64-cross all 14.2.0-19cross1 [2452 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu amd64 14.2.0-19cross1 [21.6 MB]
Get:36 http://localhost:3142/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:14.2.0-1 [1448 B]
Get:37 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-arm64-cross all 6.12.29-1cross1 [2397 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libc6-dev-arm64-cross all 2.41-8cross1 [1616 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-arm64-cross all 14.2.0-19cross1 [2552 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 g++-14-aarch64-linux-gnu amd64 14.2.0-19cross1 [12.2 MB]
Get:41 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:14.2.0-1 [1200 B]
Get:42 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B]
Get:43 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get:49 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.2 [919 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB]
Get:59 http://localhost:3142/debian unstable/main arm64 gcc-14-base arm64 14.2.0-19 [49.4 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB]
Get:61 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 14.2.0-19 [54.1 kB]
Get:62 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.41-8 [2489 kB]
Get:63 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 14.2.0-19 [2578 kB]
Get:64 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 14.2.0-19 [10.1 kB]
Get:65 http://localhost:3142/debian unstable/main arm64 libcrypt1 arm64 1:4.4.38-1 [91.8 kB]
Get:66 http://localhost:3142/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.38-1 [123 kB]
Get:67 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.41-8 [1621 kB]
Get:68 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 14.2.0-19 [124 kB]
Get:69 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 14.2.0-19 [24.2 kB]
Get:70 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 14.2.0-19 [1161 kB]
Get:71 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 14.2.0-19 [2383 kB]
Get:72 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 14.2.0-19 [638 kB]
Get:73 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 14.2.0-19 [1039 kB]
Get:74 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 14.2.0-19 [1442 kB]
Get:75 http://localhost:3142/debian unstable/main arm64 libgcc-14-dev arm64 14.2.0-19 [2359 kB]
Get:76 http://localhost:3142/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB]
Get:77 http://localhost:3142/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB]
Get:78 http://localhost:3142/debian unstable/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB]
Get:79 http://localhost:3142/debian unstable/main arm64 libstdc++-14-dev arm64 14.2.0-19 [2295 kB]
Get:80 http://localhost:3142/debian unstable/main arm64 opt arm64 3.19-3+b1 [69.1 kB]
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Processing triggers for libc-bin (2.41-8) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64)
Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.19 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-8 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-arm64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-arm64-cross_14.2.0-19cross1 linux-libc-dev_6.12.29-1
Package versions: apt_3.0.2 apt-utils_3.0.2 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b2 binutils_2.44-3 binutils-aarch64-linux-gnu_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-2 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-aarch64-linux-gnu_14.2.0-19cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-arm64_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.22 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dpkg_1.22.19 dpkg-dev_1.22.19 dwz_0.15-1+b1 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-aarch64-linux-gnu_14.2.0-19cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-aarch64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-aarch64-linux-gnu_14.2.0-19cross1 gcc-14-aarch64-linux-gnu-base_14.2.0-19cross1 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-aarch64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 grep_3.11-4 groff-base_1.23.0-8 gzip_1.13-1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.0.2 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-arm64-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-arm64-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.41-5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-8 libc-dev-bin_2.41-8 libc6_2.41-8 libc6-arm64-cross_2.41-8cross1 libc6-dev_2.41-8 libc6-dev-arm64-cross_2.41-8cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-7 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.19 libelf1t64_0.192-4 libfakeroot_1.37.1.2-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-19 libgcc-14-dev-arm64-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-arm64-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgomp1_14.2.0-19 libgomp1-arm64-cross_14.2.0-19cross1 libgprofng0_2.44-3 libgsl-dev_2.8+dfsg-5 libgsl28_2.8+dfsg-5 libgslcblas0_2.8+dfsg-5 libhogweed6t64_3.10.1-1 libhwasan0_14.2.0-19 libhwasan0-arm64-cross_14.2.0-19cross1 libisl23_0.27-1 libitm1_14.2.0-19 libitm1-arm64-cross_14.2.0-19cross1 libjansson4_2.14-2+b3 liblastlog2-2_2.41-5 liblocale-gettext-perl_1.07-7+b1 liblsan0_14.2.0-19 liblsan0-arm64-cross_14.2.0-19cross1 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libnettle8t64_3.10.1-1 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-3 libpipeline1_1.5.8-1 libquadmath0_14.2.0-19 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-4 libssl3t64_3.5.0-1 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-arm64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-arm64-cross_14.2.0-19cross1 libsystemd0_257.5-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libtsan2-arm64-cross_14.2.0-19cross1 libubsan1_14.2.0-19 libubsan1-arm64-cross_14.2.0-19cross1 libuchardet0_0.0.8-1+b2 libudev1_257.5-2 libunistring5_1.3-2 libuuid1_2.41-5 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.29-1 linux-libc-dev-arm64-cross_6.12.29-1cross1 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 mount_2.41-5 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.0-1 opt_3.19-3+b1 passwd_1:4.17.4-2 patch_2.8-1 perl_5.40.1-3 perl-base_5.40.1-3 perl-modules-5.40_5.40.1-3 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-2 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-3 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: proftmb
Binary: proftmb
Architecture: any
Version: 1.1.12-11
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Laszlo Kajan <lkajan@rostlab.org>, Andreas Tille <tille@debian.org>
Homepage: https://rostlab.org/
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/proftmb
Vcs-Git: https://salsa.debian.org/med-team/proftmb.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), help2man, libgsl-dev, opt, debhelper
Package-List:
proftmb deb science optional arch=any
Checksums-Sha1:
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Files:
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280c3b062342975bb4d635c5d7d2dbb0 6940 proftmb_1.1.12-11.debian.tar.xz
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error: the following required arguments were not provided:
--keyring <FILE>
Usage: sqv --keyring <FILE> --cleartext --output <FILE> <FILE>
For more information, try '--help'.
dpkg-source: warning: cannot verify inline signature for ./proftmb_1.1.12-11.dsc: no acceptable signature found
dpkg-source: info: extracting proftmb in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking proftmb_1.1.12.orig.tar.gz
dpkg-source: info: unpacking proftmb_1.1.12-11.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying avoid-dnl-in-makefiles.diff
dpkg-source: info: applying gcc-6.patch
dpkg-source: info: applying gcc-11.patch
dpkg-source: info: applying no_pp-popcon.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
OLDPWD=/home/crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SBUILD_CONFIG=/tmp/tmp.3W8YyqXdYY/sbuild.conf
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-07442ebd-6c45-433a-b497-87bc7b7034fb
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa
XDG_SESSION_CLASS=user
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package proftmb
dpkg-buildpackage: info: source version 1.1.12-11
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
configure.ac:9: installing './compile'
configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
dh_auto_configure -a
./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether aarch64-linux-gnu-gcc accepts -g... yes
checking for aarch64-linux-gnu-gcc option to enable C11 features... none needed
checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of aarch64-linux-gnu-gcc... none
checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++
checking whether the compiler supports GNU C++... yes
checking whether aarch64-linux-gnu-g++ accepts -g... yes
checking for aarch64-linux-gnu-g++ option to enable C++11 features... none needed
checking dependency style of aarch64-linux-gnu-g++... none
checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for main in -lopt... yes
checking for main in -lm... yes
checking for main in -lgslcblas... yes
checking for main in -lgsl... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for gsl/gsl_errno.h... yes
checking for opt.h... yes
checking for an ANSI C-conforming const... yes
checking for --enable-debug... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Making all in examples
make[3]: Entering directory '/<<PKGBUILDDIR>>/examples'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/examples'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o proftmb.o proftmb.cpp
In file included from proftmb.cpp:18:
HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
21 | void DisplayArch(ostream&,Par&,uint,char* ="");
| ^
HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
24 | void PrintEmit(ostream&,Par&,uint,char* ="");
| ^
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Backward.o Backward.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o BaumWelch.o BaumWelch.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Eval.o Eval.cpp
Eval.cpp: In function ‘std::pair<double, double> CalcAccCovFromZ(double&)’:
Eval.cpp:573:52: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
573 | pair<double, double> CalcAccCovFromZ(double& zscore){
| ^
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ExpectA.o ExpectA.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ExpectC.o ExpectC.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Forward.o Forward.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o GradientDescent.o GradientDescent.cpp
GradientDescent.cpp: In member function ‘std::pair<double, double> Par::Update(std::vector<TrainSeq>&, std::set<std::__cxx11::basic_string<char> >&)’:
GradientDescent.cpp:329:77: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
329 | pair<double, double> Par::Update(vector<TrainSeq>& tsq, set<string>& exclude){
| ^
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o HMMEval.o HMMEval.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o HMMOutput.o HMMOutput.cpp
In file included from HMMOutput.cpp:1:
HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
21 | void DisplayArch(ostream&,Par&,uint,char* ="");
| ^
HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
24 | void PrintEmit(ostream&,Par&,uint,char* ="");
| ^
HMMOutput.cpp: In function ‘void PrintRdb(std::ostream&, Seq&, bool, bool)’:
HMMOutput.cpp:58:62: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
58 | pair<double, double> ac = CalcAccCovFromZ(S.scl.Score);
| ^
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o HTools.o HTools.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Krogh1Best.o Krogh1Best.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Load.o Load.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Output.o Output.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Par.o Par.cpp
In file included from /usr/aarch64-linux-gnu/include/c++/14/bits/stl_algobase.h:64,
from /usr/aarch64-linux-gnu/include/c++/14/string:51,
from structs.h:4,
from Par.h:4,
from Par.cpp:1:
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]’:
Par.cpp:250:22: required from here
250 | zmap[z] = make_pair(acc,cov);
| ~~~~~~~~~^~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Params.o Params.cpp
In file included from Params.cpp:2:
Serialize.h: In function ‘void StoreVector(std::ofstream&, std::vector<T>&, T, M1, M2) [with T = std::pair<double, double>; M1 = double; M2 = double]’:
Serialize.h:28:6: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
28 | void StoreVector(ofstream& of, vector<T>& D, T dummy1, M1 dummy2, M2 dummy3){
| ^~~~~~~~~~~
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Posterior.o Posterior.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Regularization.o Regularization.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Seq.o Seq.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Sov.o Sov.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o structs.o structs.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Tally.o Tally.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Tools.o Tools.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o TrainSeq.o TrainSeq.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Viterbi.o Viterbi.cpp
aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o Zscore.o Zscore.cpp
In file included from /usr/aarch64-linux-gnu/include/c++/14/bits/stl_algobase.h:64,
from /usr/aarch64-linux-gnu/include/c++/14/vector:62,
from Zscore.h:1,
from Zscore.cpp:24:
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]’:
Zscore.cpp:112:42: required from here
112 | stats.insert(make_pair(mean_x,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = pair<double, double>; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = pair<double, double>; typename decay<_Tp2>::type = pair<double, double>]’:
Zscore.cpp:112:25: required from here
112 | stats.insert(make_pair(mean_x,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, std::pair<double, double> >’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
Zscore.cpp: In function ‘std::set<std::pair<double, std::pair<double, double> > > ComputeStats(std::vector<int>&, std::vector<double>&, int)’:
Zscore.cpp:112:56: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
112 | stats.insert(make_pair(mean_x,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~
Zscore.cpp:112:39: note: parameter passing for argument of type ‘std::pair<double, std::pair<double, double> >’ when C++17 is enabled changed to match C++14 in GCC 10.1
112 | stats.insert(make_pair(mean_x,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Zscore.cpp:143:56: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
143 | stats.insert(make_pair((double)cur_lo,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~
Zscore.cpp:143:31: note: parameter passing for argument of type ‘std::pair<double, std::pair<double, double> >’ when C++17 is enabled changed to match C++14 in GCC 10.1
143 | stats.insert(make_pair((double)cur_lo,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Zscore.cpp:149:60: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
149 | stats.insert(make_pair((double)max_length,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~
Zscore.cpp:149:31: note: parameter passing for argument of type ‘std::pair<double, std::pair<double, double> >’ when C++17 is enabled changed to match C++14 in GCC 10.1
149 | stats.insert(make_pair((double)max_length,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h: In function ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&]’:
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h: In function ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = pair<double, double>]’:
/usr/aarch64-linux-gnu/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<double, std::pair<double, double> >’ when C++17 is enabled changed to match C++14 in GCC 10.1
Zscore.cpp: In function ‘std::set<std::pair<double, std::pair<double, double> > > ComputeStats(std::vector<int>&, std::vector<double>&, int)’:
Zscore.cpp:112:56: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
112 | stats.insert(make_pair(mean_x,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~
Zscore.cpp:143:31: note: parameter passing for argument of type ‘std::pair<double, std::pair<double, double> >’ when C++17 is enabled changed to match C++14 in GCC 10.1
143 | stats.insert(make_pair((double)cur_lo,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Zscore.cpp:143:56: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
143 | stats.insert(make_pair((double)cur_lo,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~
Zscore.cpp:149:31: note: parameter passing for argument of type ‘std::pair<double, std::pair<double, double> >’ when C++17 is enabled changed to match C++14 in GCC 10.1
149 | stats.insert(make_pair((double)max_length,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Zscore.cpp:149:60: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
149 | stats.insert(make_pair((double)max_length,make_pair(mean_y,sd)));
| ~~~~~~~~~^~~~~~~~~~~
rm -f libhmm.a
ar cr libhmm.a Backward.o BaumWelch.o Eval.o ExpectA.o ExpectC.o Forward.o GradientDescent.o HMMEval.o HMMOutput.o HTools.o Krogh1Best.o Load.o Output.o Par.o Params.o Posterior.o Regularization.o Seq.o Sov.o structs.o Tally.o Tools.o TrainSeq.o Viterbi.o Zscore.o
aarch64-linux-gnu-ranlib libhmm.a
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o proftmb proftmb.o libhmm.a -lgsl -lgslcblas -lm -lopt
sed -e 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;' < proftmb_example.txt.raw > proftmb_example.txt
help2man -n 'per-residue prediction of bacterial transmembrane beta barrels' --output=proftmb.1 --no-info --include=proftmb_example.txt ./proftmb
help2man: can't get `--help' info from ./proftmb
Try `--no-discard-stderr' if option outputs to stderr
make[3]: *** [Makefile:859: proftmb.1] Error 126
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: *** [Makefile:421: all-recursive] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: *** [Makefile:341: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 returned exit code 2
make: *** [debian/rules:8: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2025-05-26T09:39:37Z
+------------------------------------------------------------------------------+
| Finished Timed Build Commands |
+------------------------------------------------------------------------------+
rm -Rf /<<PKGBUILDDIR>>/
--------------------------------------------
I: Finished running 'rm -Rf /<<PKGBUILDDIR>>/'.
Finished processing commands.
--------------------------------------------------------------------------------
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 49
Distribution: unstable
Fail-Stage: build
Foreign Architectures: arm64
Host Architecture: arm64
Install-Time: 10
Job: proftmb_1.1.12-11
Machine Architecture: amd64
Package: proftmb
Package-Time: 70
Source-Version: 1.1.12-11
Space: n/a
Status: attempted
Version: 1.1.12-11
--------------------------------------------------------------------------------
Finished at 2025-05-26T09:39:37Z
Build needed 00:01:10, no disk space