sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley

+==============================================================================+
| progressivemauve 1.2.0+4713+dfsg-6 (armhf)   Tue, 24 Feb 2026 22:39:43 +0000 |
+==============================================================================+

Package: progressivemauve
Version: 1.2.0+4713+dfsg-6
Source Version: 1.2.0+4713+dfsg-6
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armhf
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-a494433d-3098-4050-83de-1875d1611b86' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/progressivemauve-FrU1rF/resolver-OslHWF' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Hit:1 http://localhost:3142/debian unstable InRelease
Get:2 http://localhost:3142/debian unstable/main armhf Packages [9698 kB]
Fetched 9698 kB in 1s (12.1 MB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'progressivemauve' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/progressivemauve.git
Please use:
git clone https://salsa.debian.org/med-team/progressivemauve.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 116 kB of source archives.
Get:1 http://localhost:3142/debian unstable/main progressivemauve 1.2.0+4713+dfsg-6 (dsc) [2285 B]
Get:2 http://localhost:3142/debian unstable/main progressivemauve 1.2.0+4713+dfsg-6 (tar) [96.1 kB]
Get:3 http://localhost:3142/debian unstable/main progressivemauve 1.2.0+4713+dfsg-6 (diff) [18.1 kB]
Fetched 116 kB in 0s (341 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/progressivemauve-FrU1rF/progressivemauve-1.2.0+4713+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/progressivemauve-FrU1rF' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), pkgconf, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-iostreams-dev, libgenome-dev, libmuscle-dev, libmems-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
Filtered Build-Depends: debhelper-compat (= 13), pkgconf, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-iostreams-dev, libgenome-dev, libmuscle-dev, libmems-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [859 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [902 B]
Fetched 2370 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf
  bsdextrautils cpp-15-arm-linux-gnueabihf cpp-arm-linux-gnueabihf
  crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism
  dwz fakeroot file g++-15-arm-linux-gnueabihf g++-arm-linux-gnueabihf
  gcc-15-arm-linux-gnueabihf gcc-15-arm-linux-gnueabihf-base gcc-15-base:armhf
  gcc-15-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base
  icu-devtools intltool-debian libarchive-zip-perl libasan8:armhf
  libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross
  libboost-atomic1.83-dev:armhf libboost-atomic1.83.0:armhf libboost-dev:armhf
  libboost-filesystem-dev:armhf libboost-filesystem1.83-dev:armhf
  libboost-filesystem1.83.0:armhf libboost-iostreams-dev:armhf
  libboost-iostreams1.83-dev:armhf libboost-iostreams1.83.0:armhf
  libboost-program-options-dev:armhf libboost-program-options1.83-dev:armhf
  libboost-program-options1.83.0:armhf libboost-regex1.83-dev:armhf
  libboost-regex1.83.0:armhf libboost-system1.83-dev:armhf
  libboost-system1.83.0:armhf libboost1.83-dev:armhf libbz2-1.0:armhf
  libc-gconv-modules-extra:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf
  libc6-dev-armhf-cross libdebhelper-perl libelf1t64 libfakeroot
  libfile-stripnondeterminism-perl libgcc-15-dev:armhf
  libgcc-15-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross
  libgenome-dev:armhf libgenome0:armhf libgomp1:armhf libgomp1-armhf-cross
  libicu-dev:armhf libicu76 libicu76:armhf liblzma5:armhf libmagic-mgc
  libmagic1t64 libmems-dev:armhf libmems1t64:armhf libmuscle-dev:armhf
  libmuscle1:armhf libpipeline1 libpkgconf7 libstdc++-15-dev:armhf
  libstdc++-15-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtool
  libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring5 libxml2-16
  libzstd1:armhf linux-libc-dev-armhf-cross m4 man-db pkgconf:armhf
  pkgconf-bin po-debconf sensible-utils zlib1g:armhf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-15-locales
  cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison
  gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
  gnulib-l10n groff libboost-doc:armhf libboost1.83-doc:armhf
  libboost-chrono1.83-dev:armhf libboost-container1.83-dev:armhf
  libboost-context1.83-dev:armhf libboost-contract1.83-dev:armhf
  libboost-coroutine1.83-dev:armhf libboost-date-time1.83-dev:armhf
  libboost-exception1.83-dev:armhf libboost-fiber1.83-dev:armhf
  libboost-graph-parallel1.83-dev:armhf libboost-graph1.83-dev:armhf
  libboost-json1.83-dev:armhf libboost-locale1.83-dev:armhf
  libboost-log1.83-dev:armhf libboost-math1.83-dev:armhf
  libboost-mpi-python1.83-dev:armhf libboost-mpi1.83-dev:armhf
  libboost-nowide1.83-dev:armhf libboost-numpy1.83-dev:armhf
  libboost-python1.83-dev:armhf libboost-random1.83-dev:armhf
  libboost-serialization1.83-dev:armhf libboost-stacktrace1.83-dev:armhf
  libboost-test1.83-dev:armhf libboost-thread1.83-dev:armhf
  libboost-timer1.83-dev:armhf libboost-type-erasure1.83-dev:armhf
  libboost-url1.83-dev:armhf libboost-wave1.83-dev:armhf
  libboost1.83-tools-dev:armhf libmpfrc++-dev:armhf libntl-dev:armhf
  glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf
  libnss-nisplus:armhf manpages-dev:armhf icu-doc:armhf libstdc++-15-doc:armhf
  libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libltdl-dev
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf
  bsdextrautils cpp-15-arm-linux-gnueabihf cpp-arm-linux-gnueabihf
  crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism
  dwz fakeroot file g++-15-arm-linux-gnueabihf g++-arm-linux-gnueabihf
  gcc-15-arm-linux-gnueabihf gcc-15-arm-linux-gnueabihf-base gcc-15-base:armhf
  gcc-15-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base
  icu-devtools intltool-debian libarchive-zip-perl libasan8:armhf
  libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross
  libboost-atomic1.83-dev:armhf libboost-atomic1.83.0:armhf libboost-dev:armhf
  libboost-filesystem-dev:armhf libboost-filesystem1.83-dev:armhf
  libboost-filesystem1.83.0:armhf libboost-iostreams-dev:armhf
  libboost-iostreams1.83-dev:armhf libboost-iostreams1.83.0:armhf
  libboost-program-options-dev:armhf libboost-program-options1.83-dev:armhf
  libboost-program-options1.83.0:armhf libboost-regex1.83-dev:armhf
  libboost-regex1.83.0:armhf libboost-system1.83-dev:armhf
  libboost-system1.83.0:armhf libboost1.83-dev:armhf libbz2-1.0:armhf
  libc-gconv-modules-extra:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf
  libc6-dev-armhf-cross libdebhelper-perl libelf1t64 libfakeroot
  libfile-stripnondeterminism-perl libgcc-15-dev:armhf
  libgcc-15-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross
  libgenome-dev:armhf libgenome0:armhf libgomp1:armhf libgomp1-armhf-cross
  libicu-dev:armhf libicu76 libicu76:armhf liblzma5:armhf libmagic-mgc
  libmagic1t64 libmems-dev:armhf libmems1t64:armhf libmuscle-dev:armhf
  libmuscle1:armhf libpipeline1 libpkgconf7 libstdc++-15-dev:armhf
  libstdc++-15-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtool
  libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring5 libxml2-16
  libzstd1:armhf linux-libc-dev-armhf-cross m4 man-db pkgconf:armhf
  pkgconf-bin po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils
  zlib1g:armhf
0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded.
Need to get 126 MB of archives.
After this operation, 638 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B]
Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.3-4 [98.9 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.46-2 [1552 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 gcc-15-arm-linux-gnueabihf-base amd64 15.2.0-13cross1 [55.1 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 cpp-15-arm-linux-gnueabihf amd64 15.2.0-13cross1 [11.2 MB]
Get:20 http://localhost:3142/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:15.2.0-5 [5336 B]
Get:21 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base all 15.2.0-13cross1 [50.4 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 libc6-armhf-cross all 2.42-12cross1 [1257 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armhf-cross all 15.2.0-13cross1 [36.8 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libgomp1-armhf-cross all 15.2.0-13cross1 [112 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libatomic1-armhf-cross all 15.2.0-13cross1 [6860 B]
Get:26 http://localhost:3142/debian unstable/main amd64 libasan8-armhf-cross all 15.2.0-13cross1 [2623 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libstdc++6-armhf-cross all 15.2.0-13cross1 [575 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libubsan1-armhf-cross all 15.2.0-13cross1 [1074 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-armhf-cross all 15.2.0-13cross1 [762 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 gcc-15-arm-linux-gnueabihf amd64 15.2.0-13cross1 [21.2 MB]
Get:31 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:15.2.0-5 [1456 B]
Get:32 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armhf-cross all 6.18.12-1 [11.8 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 libc6-dev-armhf-cross all 2.42-12cross1 [1347 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-armhf-cross all 15.2.0-13cross1 [2413 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 g++-15-arm-linux-gnueabihf amd64 15.2.0-13cross1 [12.2 MB]
Get:36 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:15.2.0-5 [1208 B]
Get:37 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armhf all 12.12 [3548 B]
Get:38 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.30 [92.7 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-9 [540 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21+nmu1 [11.7 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B]
Get:44 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2+b1 [466 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 debhelper all 13.30 [942 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.2-1 [29.9 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.2-1 [76.2 kB]
Get:54 http://localhost:3142/debian unstable/main armhf gcc-15-base armhf 15.2.0-14 [55.0 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libicu76 amd64 76.1-4+b1 [9752 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 icu-devtools amd64 76.1-4+b1 [218 kB]
Get:57 http://localhost:3142/debian unstable/main armhf libgcc-s1 armhf 15.2.0-14 [36.8 kB]
Get:58 http://localhost:3142/debian unstable/main armhf libc-gconv-modules-extra armhf 2.42-13 [1159 kB]
Get:59 http://localhost:3142/debian unstable/main armhf libc6 armhf 2.42-13 [1489 kB]
Get:60 http://localhost:3142/debian unstable/main armhf libasan8 armhf 15.2.0-14 [2632 kB]
Get:61 http://localhost:3142/debian unstable/main armhf libatomic1 armhf 15.2.0-14 [7132 B]
Get:62 http://localhost:3142/debian unstable/main armhf libgomp1 armhf 15.2.0-14 [115 kB]
Get:63 http://localhost:3142/debian unstable/main armhf libstdc++6 armhf 15.2.0-14 [623 kB]
Get:64 http://localhost:3142/debian unstable/main armhf libubsan1 armhf 15.2.0-14 [1075 kB]
Get:65 http://localhost:3142/debian unstable/main armhf libgcc-15-dev armhf 15.2.0-14 [768 kB]
Get:66 http://localhost:3142/debian unstable/main armhf libc6-dev armhf 2.42-13 [1351 kB]
Get:67 http://localhost:3142/debian unstable/main armhf libstdc++-15-dev armhf 15.2.0-14 [2446 kB]
Get:68 http://localhost:3142/debian unstable/main armhf libboost1.83-dev armhf 1.83.0-5+b1 [10.6 MB]
Get:69 http://localhost:3142/debian unstable/main armhf libboost-atomic1.83.0 armhf 1.83.0-5+b1 [234 kB]
Get:70 http://localhost:3142/debian unstable/main armhf libboost-atomic1.83-dev armhf 1.83.0-5+b1 [235 kB]
Get:71 http://localhost:3142/debian unstable/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B]
Get:72 http://localhost:3142/debian unstable/main armhf libboost-filesystem1.83.0 armhf 1.83.0-5+b1 [272 kB]
Get:73 http://localhost:3142/debian unstable/main armhf libboost-system1.83.0 armhf 1.83.0-5+b1 [231 kB]
Get:74 http://localhost:3142/debian unstable/main armhf libboost-system1.83-dev armhf 1.83.0-5+b1 [232 kB]
Get:75 http://localhost:3142/debian unstable/main armhf libboost-filesystem1.83-dev armhf 1.83.0-5+b1 [287 kB]
Get:76 http://localhost:3142/debian unstable/main armhf libboost-filesystem-dev armhf 1.83.0.2+b2 [3616 B]
Get:77 http://localhost:3142/debian unstable/main armhf libboost-regex1.83.0 armhf 1.83.0-5+b1 [310 kB]
Get:78 http://localhost:3142/debian unstable/main armhf libicu76 armhf 76.1-4+b1 [9381 kB]
Get:79 http://localhost:3142/debian unstable/main armhf libicu-dev armhf 76.1-4+b1 [10.5 MB]
Get:80 http://localhost:3142/debian unstable/main armhf libboost-regex1.83-dev armhf 1.83.0-5+b1 [338 kB]
Get:81 http://localhost:3142/debian unstable/main armhf libbz2-1.0 armhf 1.0.8-6+b1 [35.3 kB]
Get:82 http://localhost:3142/debian unstable/main armhf liblzma5 armhf 5.8.2-2 [314 kB]
Get:83 http://localhost:3142/debian unstable/main armhf libzstd1 armhf 1.5.7+dfsg-3+b1 [269 kB]
Get:84 http://localhost:3142/debian unstable/main armhf zlib1g armhf 1:1.3.dfsg+really1.3.1-3 [75.6 kB]
Get:85 http://localhost:3142/debian unstable/main armhf libboost-iostreams1.83.0 armhf 1.83.0-5+b1 [250 kB]
Get:86 http://localhost:3142/debian unstable/main armhf libboost-iostreams1.83-dev armhf 1.83.0-5+b1 [262 kB]
Get:87 http://localhost:3142/debian unstable/main armhf libboost-iostreams-dev armhf 1.83.0.2+b2 [3568 B]
Get:88 http://localhost:3142/debian unstable/main armhf libboost-program-options1.83.0 armhf 1.83.0-5+b1 [326 kB]
Get:89 http://localhost:3142/debian unstable/main armhf libboost-program-options1.83-dev armhf 1.83.0-5+b1 [367 kB]
Get:90 http://localhost:3142/debian unstable/main armhf libboost-program-options-dev armhf 1.83.0.2+b2 [3604 B]
Get:91 http://localhost:3142/debian unstable/main armhf libgenome0 armhf 1.3.11+svn20110227.4616-6+b3 [104 kB]
Get:92 http://localhost:3142/debian unstable/main armhf libgenome-dev armhf 1.3.11+svn20110227.4616-6+b3 [180 kB]
Get:93 http://localhost:3142/debian unstable/main armhf libmuscle1 armhf 3.7+4565-8 [204 kB]
Get:94 http://localhost:3142/debian unstable/main armhf libmems1t64 armhf 1.6.0+4725-13 [598 kB]
Get:95 http://localhost:3142/debian unstable/main armhf libmuscle-dev armhf 3.7+4565-8 [258 kB]
Get:96 http://localhost:3142/debian unstable/main armhf libmems-dev armhf 1.6.0+4725-13 [883 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB]
Get:99 http://localhost:3142/debian unstable/main armhf pkgconf armhf 2.5.1-4 [33.6 kB]
Preconfiguring packages ...
Fetched 126 MB in 1s (209 MB/s)
Selecting previously unselected package sensible-utils.
(Reading database ... 12980 files and directories currently installed.)
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Unpacking sensible-utils (0.0.26) ...
Selecting previously unselected package libmagic-mgc.
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Unpacking libmagic-mgc (1:5.46-5+b1) ...
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Setting up libstdc++6-armhf-cross (15.2.0-13cross1) ...
Setting up icu-devtools (76.1-4+b1) ...
Setting up libubsan1-armhf-cross (15.2.0-13cross1) ...
Setting up dh-strip-nondeterminism (1.15.0-1) ...
Setting up groff-base (1.23.0-10) ...
Setting up libasan8-armhf-cross (15.2.0-13cross1) ...
Setting up po-debconf (1.0.22) ...
Setting up man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libgcc-15-dev-armhf-cross (15.2.0-13cross1) ...
Setting up gcc-15-arm-linux-gnueabihf (15.2.0-13cross1) ...
Setting up debhelper (13.30) ...
Setting up libstdc++-15-dev-armhf-cross (15.2.0-13cross1) ...
Setting up gcc-arm-linux-gnueabihf (4:15.2.0-5) ...
Setting up g++-15-arm-linux-gnueabihf (15.2.0-13cross1) ...
Setting up g++-arm-linux-gnueabihf (4:15.2.0-5) ...
Setting up crossbuild-essential-armhf (12.12) ...
Setting up libgcc-s1:armhf (15.2.0-14) ...
Setting up libc6:armhf (2.42-13) ...
Setting up libasan8:armhf (15.2.0-14) ...
Setting up libc6-dev:armhf (2.42-13) ...
Setting up libbz2-1.0:armhf (1.0.8-6+b1) ...
Setting up libstdc++6:armhf (15.2.0-14) ...
Setting up libboost-program-options1.83.0:armhf (1.83.0-5+b1) ...
Setting up libzstd1:armhf (1.5.7+dfsg-3+b1) ...
Setting up libgenome0:armhf (1.3.11+svn20110227.4616-6+b3) ...
Setting up liblzma5:armhf (5.8.2-2) ...
Setting up libgenome-dev:armhf (1.3.11+svn20110227.4616-6+b3) ...
Setting up libboost-regex1.83.0:armhf (1.83.0-5+b1) ...
Setting up zlib1g:armhf (1:1.3.dfsg+really1.3.1-3) ...
Setting up libboost-filesystem1.83.0:armhf (1.83.0-5+b1) ...
Setting up libgomp1:armhf (15.2.0-14) ...
Setting up libboost-atomic1.83.0:armhf (1.83.0-5+b1) ...
Setting up libboost-iostreams1.83.0:armhf (1.83.0-5+b1) ...
Setting up libatomic1:armhf (15.2.0-14) ...
Setting up libubsan1:armhf (15.2.0-14) ...
Setting up libicu76:armhf (76.1-4+b1) ...
Setting up libicu-dev:armhf (76.1-4+b1) ...
Setting up libgcc-15-dev:armhf (15.2.0-14) ...
Setting up libmuscle1:armhf (3.7+4565-8) ...
Setting up libmems1t64:armhf (1.6.0+4725-13) ...
Setting up libstdc++-15-dev:armhf (15.2.0-14) ...
Setting up libmuscle-dev:armhf (3.7+4565-8) ...
Setting up libboost1.83-dev:armhf (1.83.0-5+b1) ...
Setting up libboost-program-options1.83-dev:armhf (1.83.0-5+b1) ...
Setting up libboost-program-options-dev:armhf (1.83.0.2+b2) ...
Setting up libboost-regex1.83-dev:armhf (1.83.0-5+b1) ...
Setting up libboost-atomic1.83-dev:armhf (1.83.0-5+b1) ...
Setting up libboost-dev:armhf (1.83.0.2+b2) ...
Setting up libboost-system1.83-dev:armhf (1.83.0-5+b1) ...
Setting up libboost-iostreams1.83-dev:armhf (1.83.0-5+b1) ...
Setting up libboost-filesystem1.83-dev:armhf (1.83.0-5+b1) ...
Setting up libboost-iostreams-dev:armhf (1.83.0.2+b2) ...
Setting up libboost-filesystem-dev:armhf (1.83.0.2+b2) ...
Setting up libmems-dev:armhf (1.6.0+4725-13) ...
Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ...
Processing triggers for libc-bin (2.42-13) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64)
Toolchain package versions: binutils_2.46-2 dpkg-dev_1.23.5 g++-15_15.2.0-14 gcc-15_15.2.0-14 libc6-dev_2.42-13 libstdc++-15-dev_15.2.0-14 libstdc++-15-dev-armhf-cross_15.2.0-13cross1 libstdc++6_15.2.0-14 libstdc++6-armhf-cross_15.2.0-13cross1 linux-libc-dev_6.18.12-1
Package versions: apt_3.1.16 apt-utils_3.1.16 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-2 binutils_2.46-2 binutils-arm-linux-gnueabihf_2.46-2 binutils-common_2.46-2 binutils-x86-64-linux-gnu_2.46-2 bsdextrautils_2.41.3-4 bsdutils_1:2.41.3-4 build-essential_12.12 bzip2_1.0.8-6+b1 coreutils_9.7-3 cpp_4:15.2.0-5 cpp-15_15.2.0-14 cpp-15-arm-linux-gnueabihf_15.2.0-13cross1 cpp-15-x86-64-linux-gnu_15.2.0-14 cpp-arm-linux-gnueabihf_4:15.2.0-5 cpp-x86-64-linux-gnu_4:15.2.0-5 crossbuild-essential-armhf_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_13.30 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21+nmu1 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.23.5 dpkg-dev_1.23.5 dwz_0.16-2 fakeroot_1.37.2-1 file_1:5.46-5+b1 findutils_4.10.0-3 g++_4:15.2.0-5 g++-15_15.2.0-14 g++-15-arm-linux-gnueabihf_15.2.0-13cross1 g++-15-x86-64-linux-gnu_15.2.0-14 g++-arm-linux-gnueabihf_4:15.2.0-5 g++-x86-64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-15_15.2.0-14 gcc-15-arm-linux-gnueabihf_15.2.0-13cross1 gcc-15-arm-linux-gnueabihf-base_15.2.0-13cross1 gcc-15-base_15.2.0-14 gcc-15-cross-base_15.2.0-13cross1 gcc-15-x86-64-linux-gnu_15.2.0-14 gcc-arm-linux-gnueabihf_4:15.2.0-5 gcc-x86-64-linux-gnu_4:15.2.0-5 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1 groff-base_1.23.0-10 gzip_1.13-1 hostname_3.25 icu-devtools_76.1-4+b1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libapt-pkg7.0_3.1.16 libarchive-zip-perl_1.68-1 libasan8_15.2.0-14 libasan8-armhf-cross_15.2.0-13cross1 libatomic1_15.2.0-14 libatomic1-armhf-cross_15.2.0-13cross1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-2 libblkid1_2.41.3-4 libboost-atomic1.83-dev_1.83.0-5+b1 libboost-atomic1.83.0_1.83.0-5+b1 libboost-dev_1.83.0.2+b2 libboost-filesystem-dev_1.83.0.2+b2 libboost-filesystem1.83-dev_1.83.0-5+b1 libboost-filesystem1.83.0_1.83.0-5+b1 libboost-iostreams-dev_1.83.0.2+b2 libboost-iostreams1.83-dev_1.83.0-5+b1 libboost-iostreams1.83.0_1.83.0-5+b1 libboost-program-options-dev_1.83.0.2+b2 libboost-program-options1.83-dev_1.83.0-5+b1 libboost-program-options1.83.0_1.83.0-5+b1 libboost-regex1.83-dev_1.83.0-5+b1 libboost-regex1.83.0_1.83.0-5+b1 libboost-system1.83-dev_1.83.0-5+b1 libboost-system1.83.0_1.83.0-5+b1 libboost1.83-dev_1.83.0-5+b1 libbsd0_0.12.2-2+b1 libbz2-1.0_1.0.8-6+b1 libc-bin_2.42-13 libc-dev-bin_2.42-13 libc-gconv-modules-extra_2.42-13 libc6_2.42-13 libc6-armhf-cross_2.42-12cross1 libc6-dev_2.42-13 libc6-dev-armhf-cross_2.42-12cross1 libcap-ng0_0.9.1-1 libcap2_1:2.75-10+b5 libcc1-0_15.2.0-14 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.46-2 libctf0_2.46-2 libdb5.3t64_5.3.28+dfsg2-11 libdebconfclient0_0.282+b2 libdebhelper-perl_13.30 libdpkg-perl_1.23.5 libelf1t64_0.194-1 libfakeroot_1.37.2-1 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-14 libgcc-15-dev-armhf-cross_15.2.0-13cross1 libgcc-s1_15.2.0-14 libgcc-s1-armhf-cross_15.2.0-13cross1 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgenome-dev_1.3.11+svn20110227.4616-6+b3 libgenome0_1.3.11+svn20110227.4616-6+b3 libgmp10_2:6.3.0+dfsg-5+b1 libgomp1_15.2.0-14 libgomp1-armhf-cross_15.2.0-13cross1 libgprofng0_2.46-2 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-14 libicu-dev_76.1-4+b1 libicu76_76.1-4+b1 libisl23_0.27-1+b1 libitm1_15.2.0-14 libjansson4_2.14-2+b4 liblsan0_15.2.0-14 liblz4-1_1.10.0-7 liblzma5_5.8.2-2 libmagic-mgc_1:5.46-5+b1 libmagic1t64_1:5.46-5+b1 libmd0_1.1.0-2+b2 libmems-dev_1.6.0+4725-13 libmems1t64_1.6.0+4725-13 libmount1_2.41.3-4 libmpc3_1.3.1-2+b1 libmpfr6_4.2.2-2+b1 libmuscle-dev_3.7+4565-8 libmuscle1_3.7+4565-8 libnettle8t64_3.10.2-1 libpam-modules_1.7.0-5+b1 libpam-modules-bin_1.7.0-5+b1 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5+b1 libpcre2-8-0_10.46-1+b1 libperl5.40_5.40.1-7 libpipeline1_1.5.8-2 libpkgconf7_2.5.1-4 libquadmath0_15.2.0-14 libseccomp2_2.6.0-2+b1 libselinux1_3.9-4+b1 libsemanage-common_3.9-1 libsemanage2_3.9-1+b1 libsepol2_3.9-2 libsframe3_2.46-2 libsmartcols1_2.41.3-4 libssl3t64_3.5.5-1 libstdc++-15-dev_15.2.0-14 libstdc++-15-dev-armhf-cross_15.2.0-13cross1 libstdc++6_15.2.0-14 libstdc++6-armhf-cross_15.2.0-13cross1 libsystemd0_259.1-1 libtinfo6_6.6+20251231-1 libtool_2.5.4-9 libtsan2_15.2.0-14 libubsan1_15.2.0-14 libubsan1-armhf-cross_15.2.0-13cross1 libuchardet0_0.0.8-2+b1 libudev1_259.1-1 libunistring5_1.3-2+b1 libuuid1_2.41.3-4 libxml2-16_2.15.1+dfsg-2+b1 libxxhash0_0.8.3-2+b1 libzstd1_1.5.7+dfsg-3+b1 linux-libc-dev_6.18.12-1 linux-libc-dev-armhf-cross_6.18.12-1 login_1:4.16.0-2+really2.41.3-4 login.defs_1:4.19.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260129-1 mount_2.41.3-4 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 openssl-provider-legacy_3.5.5-1 passwd_1:4.19.3-1 patch_2.8-2 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-5 sysvinit-utils_3.15-6 tar_1.35+dfsg-4 tzdata_2025c-3 util-linux_2.41.3-4 xz-utils_5.8.2-2 zlib1g_1:1.3.dfsg+really1.3.1-3

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: progressivemauve
Binary: progressivemauve
Architecture: any
Version: 1.2.0+4713+dfsg-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://darlinglab.org/mauve/user-guide/mauvealigner.html
Standards-Version: 4.7.3
Vcs-Browser: https://salsa.debian.org/med-team/progressivemauve
Vcs-Git: https://salsa.debian.org/med-team/progressivemauve.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), pkgconf, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-iostreams-dev, libgenome-dev, libmuscle-dev, libmems-dev
Package-List:
 progressivemauve deb science optional arch=any
Checksums-Sha1:
 3b09d613f64fa9237d8c0566c02823136a253208 96084 progressivemauve_1.2.0+4713+dfsg.orig.tar.xz
 45805dd20788c4a2ea9185002a99f8d7b8b83bfb 18088 progressivemauve_1.2.0+4713+dfsg-6.debian.tar.xz
Checksums-Sha256:
 e5f43b4e5af5d6ddb6d4bac91a919d0d2706ff42f51a4209d2d15be8a12c3772 96084 progressivemauve_1.2.0+4713+dfsg.orig.tar.xz
 9ba7203145f84fb72c9cb4b2253a98aeed1716a3d709b4e17e9fb4a4df742e85 18088 progressivemauve_1.2.0+4713+dfsg-6.debian.tar.xz
Files:
 b9f9a0377aeccaa353cc4a491452003a 96084 progressivemauve_1.2.0+4713+dfsg.orig.tar.xz
 f4a182d7c6d73dca5a2036834d1de3b2 18088 progressivemauve_1.2.0+4713+dfsg-6.debian.tar.xz

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dpkg-source: warning: cannot verify inline signature for ./progressivemauve_1.2.0+4713+dfsg-6.dsc: missing OpenPGP keyrings
dpkg-source: info: verifying ./progressivemauve_1.2.0+4713+dfsg-6.dsc
dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp
dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp
dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp
dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp
dpkg-source: info: extracting progressivemauve in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking progressivemauve_1.2.0+4713+dfsg.orig.tar.xz
dpkg-source: info: unpacking progressivemauve_1.2.0+4713+dfsg-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_build.patch
dpkg-source: info: applying do_not_build_static_binaries.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying use-native-getopt.patch
dpkg-source: info: applying adapt-to-unversioned-libs.patch
dpkg-source: info: applying fix_FTBFS_boost1.67.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
OLDPWD=/home/crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SBUILD_CONFIG=/tmp/tmp.LMqtIw6pa8/sbuild.conf
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-a494433d-3098-4050-83de-1875d1611b86
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa
XDG_SESSION_CLASS=user

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package progressivemauve
dpkg-buildpackage: info: source version 1.2.0+4713+dfsg-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
configure.ac:12: warning: 'AM_CONFIG_HEADER': this macro is obsolete.
configure.ac:12: You should use the 'AC_CONFIG_HEADERS' macro instead.
aclocal.m4:708: AM_CONFIG_HEADER is expanded from...
configure.ac:12: the top level
configure.ac:27: warning: The macro 'AC_HEADER_STDC' is obsolete.
configure.ac:27: You should run autoupdate.
./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from...
configure.ac:27: the top level
configure.ac:71: warning: The macro 'AC_HEADER_TIME' is obsolete.
configure.ac:71: You should run autoupdate.
./lib/autoconf/headers.m4:702: AC_HEADER_TIME is expanded from...
configure.ac:71: the top level
configure.ac:85: warning: The macro 'AC_PROG_GCC_TRADITIONAL' is obsolete.
configure.ac:85: You should run autoupdate.
./lib/autoconf/c.m4:1676: AC_PROG_GCC_TRADITIONAL is expanded from...
configure.ac:85: the top level
configure.ac:91: warning: AC_OUTPUT should be used without arguments.
configure.ac:91: You should run autoupdate.
configure.ac:21: installing 'config/compile'
configure.ac:9: installing 'config/config.guess'
configure.ac:9: installing 'config/config.sub'
configure.ac:11: installing 'config/install-sh'
configure.ac:11: installing 'config/missing'
Makefile.am: installing './INSTALL'
src/Makefile.am:12: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
src/Makefile.am: installing 'config/depcomp'
src/Makefile.am:51: warning: variable 'EXTRA_mauveStatic_SOURCES' is defined but no program or
src/Makefile.am:51: library has 'mauveStatic' as canonical name (possible typo)
src/Makefile.am:49: warning: variable 'mauveStatic_SOURCES' is defined but no program or
src/Makefile.am:49: library has 'mauveStatic' as canonical name (possible typo)
src/Makefile.am:160: warning: variable 'progressiveMauveStatic_SOURCES' is defined but no program or
src/Makefile.am:160: library has 'progressiveMauveStatic' as canonical name (possible typo)
src/Makefile.am:50: warning: variable 'mauveStatic_LDADD' is defined but no program or
src/Makefile.am:50: library has 'mauveStatic' as canonical name (possible typo)
src/Makefile.am:161: warning: variable 'progressiveMauveStatic_LDADD' is defined but no program or
src/Makefile.am:161: library has 'progressiveMauveStatic' as canonical name (possible typo)
src/Makefile.am:52: warning: variable 'mauveStatic_DEPENDENCIES' is defined but no program or
src/Makefile.am:52: library has 'mauveStatic' as canonical name (possible typo)
   dh_auto_configure -a
	./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf
checking build system type... x86_64-pc-linux-gnu
checking host system type... arm-unknown-linux-gnueabihf
checking target system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking whether UID '1000' is supported by ustar format... yes
checking whether GID '1000' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether arm-linux-gnueabihf-gcc accepts -g... yes
checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed
checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of arm-linux-gnueabihf-gcc... none
checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++
checking whether the compiler supports GNU C++... yes
checking whether arm-linux-gnueabihf-g++ accepts -g... yes
checking for arm-linux-gnueabihf-g++ option to enable C++11 features... none needed
checking dependency style of arm-linux-gnueabihf-g++... none
checking whether ln -s works... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/time.h... yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for getopt_long... yes
checking for getopt... yes
checking for arm-linux-gnueabihf-pkg-config... /usr/bin/arm-linux-gnueabihf-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for DEPS... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for memset... yes
checking for libintl.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for wchar.h... yes
checking for GNU libc compatible malloc... yes
checking for _Bool... yes
checking for stdbool.h that conforms to C99 or later... yes
checking for size_t... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
   dh_auto_build -a
	make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making all in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make  all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o mauveAligner.o mauveAligner.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from mauveAligner.cpp:30:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
mauveAligner.cpp:413:62: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time]
  413 |                 cerr << "mauveAligner " << " build date " << __DATE__ << " at " << __TIME__ << endl;
      |                                                              ^~~~~~~~
mauveAligner.cpp:413:84: warning: macro ‘__TIME__’ might prevent reproducible builds [-Wdate-time]
  413 |                 cerr << "mauveAligner " << " build date " << __DATE__ << " at " << __TIME__ << endl;
      |                                                                                    ^~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from mauveAligner.cpp:18:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize    -Wl,-z,relro -Wl,-z,now -o mauveAligner mauveAligner.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o scoreAlignment.o scoreAlignment.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from /usr/include/libMems/SortedMerList.h:19,
                 from /usr/include/libMems/MatchList.h:18,
                 from scoreAlignment.cpp:13:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o scoreAlignment scoreAlignment.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o uniqueMerCount.o uniqueMerCount.cpp
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o uniqueMerCount uniqueMerCount.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o toRawSequence.o toRawSequence.cpp
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o toRawSequence toRawSequence.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o mfa2xmfa.o mfa2xmfa.cpp
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o mfa2xmfa mfa2xmfa.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o addUnalignedIntervals.o addUnalignedIntervals.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from addUnalignedIntervals.cpp:2:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libMems/AbstractMatch.h:17,
                 from /usr/include/libMems/SparseAbstractMatch.h:18,
                 from /usr/include/libMems/Interval.h:18,
                 from addUnalignedIntervals.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o addUnalignedIntervals addUnalignedIntervals.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o toMultiFastA.o toMultiFastA.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from toMultiFastA.cpp:2:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libMems/AbstractMatch.h:17,
                 from /usr/include/libMems/SparseAbstractMatch.h:18,
                 from /usr/include/libMems/Interval.h:18,
                 from toMultiFastA.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o toMultiFastA toMultiFastA.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o getAlignmentWindows.o getAlignmentWindows.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from getAlignmentWindows.cpp:14:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from /usr/include/libMems/SortedMerList.h:19,
                 from /usr/include/libMems/IntervalList.h:20,
                 from getAlignmentWindows.cpp:13:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o getAlignmentWindows getAlignmentWindows.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o uniquifyTrees.o uniquifyTrees.cpp
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o uniquifyTrees uniquifyTrees.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o toGrimmFormat.o toGrimmFormat.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from /usr/include/libMems/SortedMerList.h:19,
                 from /usr/include/libMems/IntervalList.h:20,
                 from toGrimmFormat.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o toGrimmFormat toGrimmFormat.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o mauveToXMFA.o mauveToXMFA.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from /usr/include/libMems/SortedMerList.h:19,
                 from /usr/include/libMems/IntervalList.h:20,
                 from mauveToXMFA.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o mauveToXMFA mauveToXMFA.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o stripGapColumns.o stripGapColumns.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from /usr/include/libMems/SortedMerList.h:19,
                 from /usr/include/libMems/IntervalList.h:20,
                 from stripGapColumns.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o stripGapColumns stripGapColumns.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o progressiveMauve.o progressiveMauve.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from progressiveMauve.cpp:26:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
progressiveMauve.cpp:417:66: warning: macro ‘__DATE__’ might prevent reproducible builds [-Wdate-time]
  417 |                 cerr << "progressiveMauve " << " build date " << __DATE__ << " at " << __TIME__ << endl;
      |                                                                  ^~~~~~~~
progressiveMauve.cpp:417:88: warning: macro ‘__TIME__’ might prevent reproducible builds [-Wdate-time]
  417 |                 cerr << "progressiveMauve " << " build date " << __DATE__ << " at " << __TIME__ << endl;
      |                                                                                        ^~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libMems/Matrix.h:19,
                 from progressiveMauve.cpp:17:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o UniqueMatchFinder.o UniqueMatchFinder.cpp
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o progressiveMauve progressiveMauve.o UniqueMatchFinder.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o extractBCITrees.o extractBCITrees.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/algorithm:63,
                 from extractBCITrees.cpp:4:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, double>*, vector<pair<__cxx11::basic_string<char>, double> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
 1751 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, double>*, vector<pair<__cxx11::basic_string<char>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:61:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, double>*, vector<pair<__cxx11::basic_string<char>, double> > >; _Distance = int; _Tp = pair<__cxx11::basic_string<char>, double>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, double>*, vector<pair<__cxx11::basic_string<char>, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, double>*, vector<pair<__cxx11::basic_string<char>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, double>*, vector<pair<__cxx11::basic_string<char>, double> > >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘int main(int, char**)’ at extractBCITrees.cpp:305:6:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, double>*, vector<pair<__cxx11::basic_string<char>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, double>*, vector<pair<__cxx11::basic_string<char>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, double>*, vector<pair<__cxx11::basic_string<char>, double> > >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘int main(int, char**)’ at extractBCITrees.cpp:305:6:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, double>*, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o extractBCITrees extractBCITrees.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o createBackboneMFA.o createBackboneMFA.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from createBackboneMFA.cpp:2:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libMems/AbstractMatch.h:17,
                 from /usr/include/libMems/SparseAbstractMatch.h:18,
                 from /usr/include/libMems/Interval.h:18,
                 from createBackboneMFA.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o createBackboneMFA createBackboneMFA.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o repeatoire.o repeatoire.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from repeatoire.cpp:4:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/algorithm:63,
                 from /usr/include/libMems/AbstractMatch.h:18,
                 from /usr/include/libMems/SparseAbstractMatch.h:18,
                 from /usr/include/libMems/Interval.h:18,
                 from repeatoire.cpp:2:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
 1751 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from repeatoire.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:61:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Distance = int; _Tp = pair<long long int, UngappedMatchRecord*>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1751 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Distance = int; _Tp = pair<long long unsigned int, pair<MatchRecord*, unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1901:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1901 |     __sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
      |     ^~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1901:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/set:64,
                 from /usr/include/libMems/Match.h:18,
                 from /usr/include/libMems/Interval.h:21:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_tree.h: In function ‘std::pair<typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits<typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits<typename __gnu_cxx::__alloc_traits<_Alloc>::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_tree.h:2832:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ changed in GCC 7.1
 2832 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:88:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
   88 |     __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
      |     ^~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:88:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:88:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:88:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1890:38:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1856:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
 1856 |       std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1857 |                                   __comp);
      |                                   ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1856:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘int main(int, char**)’ at repeatoire.cpp:1938:14:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long int, UngappedMatchRecord*>*, vector<pair<long long int, UngappedMatchRecord*> > >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘int main(int, char**)’ at repeatoire.cpp:1938:14:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long int, UngappedMatchRecord*>*, std::vector<std::pair<long long int, UngappedMatchRecord*> > >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >]’,
    inlined from ‘int main(int, char**)’ at repeatoire.cpp:1958:11:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 4841 |       std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter());
      |       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘int main(int, char**)’ at repeatoire.cpp:2198:31:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long unsigned int, pair<MatchRecord*, unsigned int> >*, vector<pair<long long unsigned int, pair<MatchRecord*, unsigned int> > > >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘int main(int, char**)’ at repeatoire.cpp:2198:31:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> >*, std::vector<std::pair<long long unsigned int, std::pair<MatchRecord*, unsigned int> > > >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o repeatoire repeatoire.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE   
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o alignmentProjector.o alignmentProjector.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from /usr/include/libMems/ProgressiveAligner.h:21,
                 from alignmentProjector.cpp:18:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabihf/include/c++/15/algorithm:63,
                 from alignmentProjector.cpp:8:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from alignmentProjector.cpp:7:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBIDComparator>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Distance = int; _Tp = mems::LCB; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBIDComparator>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<mems::LCBLeftComparator>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1751 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBLeftComparator>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Distance = int; _Tp = mems::LCB; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBLeftComparator>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBLeftComparator>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBIDComparator>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBLeftComparator>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = mems::LCBLeftComparator]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4874:18,
    inlined from ‘void mems::computeLCBAdjacencies_v3(const std::vector<MatchPtrType>&, std::vector<double>&, std::vector<LCB>&) [with MatchVector = std::vector<MatchProjectionAdapter*>]’ at /usr/include/libMems/GreedyBreakpointElimination.h:292:12:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBLeftComparator>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBLeftComparator>]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = mems::LCBLeftComparator]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4874:18,
    inlined from ‘void mems::computeLCBAdjacencies_v3(const std::vector<MatchPtrType>&, std::vector<double>&, std::vector<LCB>&) [with MatchVector = std::vector<MatchProjectionAdapter*>]’ at /usr/include/libMems/GreedyBreakpointElimination.h:292:12:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBIDComparator>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = mems::LCBIDComparator]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4874:18,
    inlined from ‘void mems::computeLCBAdjacencies_v3(const std::vector<MatchPtrType>&, std::vector<double>&, std::vector<LCB>&) [with MatchVector = std::vector<MatchProjectionAdapter*>]’ at /usr/include/libMems/GreedyBreakpointElimination.h:309:11:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBIDComparator>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<mems::LCBIDComparator>]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<mems::LCB*, vector<mems::LCB> >; _Compare = mems::LCBIDComparator]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4874:18,
    inlined from ‘void mems::computeLCBAdjacencies_v3(const std::vector<MatchPtrType>&, std::vector<double>&, std::vector<LCB>&) [with MatchVector = std::vector<MatchProjectionAdapter*>]’ at /usr/include/libMems/GreedyBreakpointElimination.h:309:11:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<mems::LCB*, std::vector<mems::LCB> >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘void mems::IdentifyBreakpoints(MatchVector&, std::vector<long long unsigned int>&) [with MatchVector = std::vector<MatchProjectionAdapter*>]’ at /usr/include/libMems/GreedyBreakpointElimination.h:223:11:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘void mems::IdentifyBreakpoints(MatchVector&, std::vector<long long unsigned int>&) [with MatchVector = std::vector<MatchProjectionAdapter*>]’ at /usr/include/libMems/GreedyBreakpointElimination.h:223:11:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o alignmentProjector alignmentProjector.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o stripSubsetLCBs.o stripSubsetLCBs.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from stripSubsetLCBs.cpp:7:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o stripSubsetLCBs stripSubsetLCBs.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o projectAndStrip.o projectAndStrip.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from projectAndStrip.cpp:18:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabihf/include/c++/15/algorithm:63,
                 from projectAndStrip.cpp:8:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from projectAndStrip.cpp:7:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘void mems::IdentifyBreakpoints(MatchVector&, std::vector<long long unsigned int>&) [with MatchVector = std::vector<GappedAlignment*>]’ at /usr/include/libMems/GreedyBreakpointElimination.h:223:11:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘void mems::IdentifyBreakpoints(MatchVector&, std::vector<long long unsigned int>&) [with MatchVector = std::vector<GappedAlignment*>]’ at /usr/include/libMems/GreedyBreakpointElimination.h:223:11:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o projectAndStrip projectAndStrip.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o makeBadgerMatrix.o makeBadgerMatrix.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from makeBadgerMatrix.cpp:7:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o makeBadgerMatrix makeBadgerMatrix.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o randomGeneSample.o randomGeneSample.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from randomGeneSample.cpp:18:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from randomGeneSample.cpp:7:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o randomGeneSample randomGeneSample.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o getOrthologList.o getOrthologList.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from getOrthologList.cpp:18:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/algorithm:63,
                 from getOrthologList.cpp:8:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
 1751 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from getOrthologList.cpp:7:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:61:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Distance = int; _Tp = pair<long long unsigned int, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:88:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
   88 |     __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
      |     ^~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:88:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:88:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:88:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
In function ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1890:38:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1856:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
 1856 |       std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1857 |                                   __comp);
      |                                   ~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1856:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘int main(int, char**)’ at getOrthologList.cpp:269:13:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<long long unsigned int, unsigned int>*, vector<pair<long long unsigned int, unsigned int> > >]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4841:18,
    inlined from ‘int main(int, char**)’ at getOrthologList.cpp:269:13:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, unsigned int>*, std::vector<std::pair<long long unsigned int, unsigned int> > >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o getOrthologList getOrthologList.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o bbFilter.o bbFilter.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from /usr/include/libMems/Backbone.h:24,
                 from bbFilter.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o bbFilter bbFilter.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o bbAnalyze.o bbAnalyze.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from /usr/include/libMems/Backbone.h:24,
                 from bbAnalyze.cpp:4:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
bbAnalyze.cpp: In function ‘void makeMultiFunCount(genome::gnSequence*, multifun_map_t&, multifun_names_t&, mems::bitset_t&)’:
bbAnalyze.cpp:199:36: warning: ignoring return value of ‘_FIter std::remove(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<char*, __cxx11::basic_string<char> >; _Tp = char]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  199 |                         std::remove( cur_name.begin(), cur_name.end(), '\r' );
      |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/algorithm:63,
                 from /usr/include/libMems/AbstractMatch.h:18,
                 from /usr/include/libMems/SparseAbstractMatch.h:18,
                 from /usr/include/libMems/Interval.h:18,
                 from /usr/include/libMems/IntervalList.h:22,
                 from /usr/include/libMems/Backbone.h:18:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:772:5: note: declared here
  772 |     remove(_ForwardIterator __first, _ForwardIterator __last,
      |     ^~~~~~
bbAnalyze.cpp:200:36: warning: ignoring return value of ‘_FIter std::remove(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator<char*, __cxx11::basic_string<char> >; _Tp = char]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  200 |                         std::remove( cur_name.begin(), cur_name.end(), '\n' );
      |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:772:5: note: declared here
  772 |     remove(_ForwardIterator __first, _ForwardIterator __last,
      |     ^~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from /usr/include/libMems/Backbone.h:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/set:64,
                 from /usr/include/libMems/Match.h:18,
                 from /usr/include/libMems/Interval.h:21:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_tree.h:3080:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
 3080 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<AnalRowComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1751 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:61:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Distance = int; _Tp = boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<LocComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1751:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
 1751 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
 1771 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1771:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
  340 |     __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
      |     ^~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’,
    inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1869:25,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1885:27:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1594:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1594 |       std::__make_heap(__first, __middle, __comp);
      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = AnalRowComp]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4874:18,
    inlined from ‘void mfAnalyze(std::ofstream&, multifun_map_t&, multifun_map_t&, multifun_names_t&, double)’ at bbAnalyze.cpp:266:11:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<AnalRowComp>]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> >*, vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, __cxx11::basic_string<char> > > >; _Compare = AnalRowComp]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4874:18,
    inlined from ‘void mfAnalyze(std::ofstream&, multifun_map_t&, multifun_map_t&, multifun_names_t&, double)’ at bbAnalyze.cpp:266:11:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> >*, std::vector<boost::tuples::tuple<unsigned int, unsigned int, double, double, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Distance = int; _Tp = genome::gnLocation; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
  340 |     __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
      |     ^~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_heap.h:340:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
 1877 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1877:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’,
    inlined from ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1869:25,
    inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1885:27:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1594:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
 1594 |       std::__make_heap(__first, __middle, __comp);
      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1891:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
 1891 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = LocComp]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4874:18,
    inlined from ‘void identifyIntergenicRanges(std::vector<genome::gnSequence*>&, std::vector<std::vector<std::pair<unsigned int, unsigned int> > >&)’ at bbAnalyze.cpp:549:12:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1906:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
 1906 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1907 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1908 |                                 __comp);
      |                                 ~~~~~~~
In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’,
    inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<LocComp>]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1909:31,
    inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<genome::gnLocation*, vector<genome::gnLocation> >; _Compare = LocComp]’ at /usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:4874:18,
    inlined from ‘void identifyIntergenicRanges(std::vector<genome::gnSequence*>&, std::vector<std::vector<std::pair<unsigned int, unsigned int> > >&)’ at bbAnalyze.cpp:549:12:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1818:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
 1818 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_algo.h:1823:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<genome::gnLocation*, std::vector<genome::gnLocation> >’ changed in GCC 7.1
 1823 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/map:65,
                 from /usr/include/libMems/MemHash.h:17,
                 from /usr/include/libMems/IntervalList.h:23:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘void makeMultiFunCount(genome::gnSequence*, multifun_map_t&, multifun_names_t&, mems::bitset_t&)’ at bbAnalyze.cpp:190:33:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_map.h:536:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  536 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  537 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  538 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]’,
    inlined from ‘void makeMultiFunCount(genome::gnSequence*, multifun_map_t&, multifun_names_t&, mems::bitset_t&)’ at bbAnalyze.cpp:213:17:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_map.h:536:44: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator’ changed in GCC 7.1
  536 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  537 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  538 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o bbAnalyze bbAnalyze.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o backbone_global_to_local.o backbone_global_to_local.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from /usr/include/libMems/Backbone.h:24,
                 from backbone_global_to_local.cpp:2:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from /usr/include/libMems/SortedMerList.h:19,
                 from /usr/include/libMems/IntervalList.h:20,
                 from backbone_global_to_local.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o backbone_global_to_local backbone_global_to_local.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o xmfa2maf.o xmfa2maf.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/ext/hash_map:60,
                 from /usr/include/libMems/HomologyHMM/dptables.h:43,
                 from /usr/include/libMems/HomologyHMM/homology.h:27,
                 from /usr/include/libMems/Islands.h:25,
                 from /usr/include/libMems/ProgressiveAligner.h:21,
                 from xmfa2maf.cpp:2:
/usr/arm-linux-gnueabihf/include/c++/15/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
   32 | #warning \
      |  ^~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from /usr/include/libMems/SortedMerList.h:19,
                 from /usr/include/libMems/IntervalList.h:20,
                 from xmfa2maf.cpp:1:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o xmfa2maf xmfa2maf.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I/usr/include/libMems -I/usr/include/libGenome -I/usr/include/libMUSCLE   -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o coordinateTranslate.o coordinateTranslate.cpp
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:74,
                 from /usr/include/libGenome/gnGenomeSpec.h:21,
                 from /usr/include/libGenome/gnSequence.h:27,
                 from /usr/include/libMems/SortedMerList.h:19,
                 from /usr/include/libMems/IntervalList.h:20,
                 from coordinateTranslate.cpp:5:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabihf/include/c++/15/bits/vector.tcc:181:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
  181 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/15/vector:68:
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetLeftEnd(uint, gnSeqI) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:187:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’,
    inlined from ‘void mems::SparseAbstractMatch<gnSeqIAlloc, uintAlloc>::SetStart(uint, int64) [with gnSeqIAlloc = std::allocator<long long unsigned int>; uintAlloc = std::allocator<unsigned int>]’ at /usr/include/libMems/SparseAbstractMatch.h:129:16:
/usr/arm-linux-gnueabihf/include/c++/15/bits/stl_vector.h:1793:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1793 |       { return _M_erase(begin() + (__position - cbegin())); }
      |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize   -DCOMMAND_LINE  -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now -o coordinateTranslate coordinateTranslate.o -lMems -lboost_filesystem -lboost_program_options -lboost_iostreams -lrt -lpthread -lGenome -lMUSCLE  
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install --destdir=debian/progressivemauve/ -a
	make -j1 install DESTDIR=/<<BUILDDIR>>/progressivemauve-1.2.0\+4713\+dfsg/debian/progressivemauve AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making install in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/progressivemauve/usr/bin'
  /usr/bin/install -c mauveAligner scoreAlignment uniqueMerCount toRawSequence mfa2xmfa addUnalignedIntervals toMultiFastA getAlignmentWindows uniquifyTrees toGrimmFormat mauveToXMFA stripGapColumns progressiveMauve extractBCITrees createBackboneMFA repeatoire alignmentProjector stripSubsetLCBs projectAndStrip makeBadgerMatrix randomGeneSample getOrthologList bbFilter bbAnalyze backbone_global_to_local xmfa2maf coordinateTranslate '/<<PKGBUILDDIR>>/debian/progressivemauve/usr/bin'
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dpkg-shlibdeps: warning: debian/progressivemauve/usr/bin/repeatoire contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it is probably a plugin
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'progressivemauve' in '../progressivemauve_1.2.0+4713+dfsg-6_armhf.deb'.
dpkg-deb: building package 'progressivemauve-dbgsym' in '../progressivemauve-dbgsym_1.2.0+4713+dfsg-6_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../progressivemauve_1.2.0+4713+dfsg-6_armhf.buildinfo
 dpkg-genchanges --build=any -O../progressivemauve_1.2.0+4713+dfsg-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2026-02-24T22:44:29Z

+------------------------------------------------------------------------------+
| Finished Timed Build Commands                                                |
+------------------------------------------------------------------------------+


rm -Rf /<<PKGBUILDDIR>>/
-----------------------------------------------------------------------


I: Finished running 'rm -Rf /<<PKGBUILDDIR>>/'.

Finished processing commands.
--------------------------------------------------------------------------------

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


progressivemauve_1.2.0+4713+dfsg-6_armhf.changes:
-------------------------------------------------

Format: 1.8
Date: Tue, 17 Feb 2026 16:01:36 +0100
Source: progressivemauve
Binary: progressivemauve progressivemauve-dbgsym
Built-For-Profiles: cross nocheck
Architecture: armhf
Version: 1.2.0+4713+dfsg-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 progressivemauve - multiple genome alignment algorithms
Closes: 1127261
Changes:
 progressivemauve (1.2.0+4713+dfsg-6) unstable; urgency=medium
 .
   * d/watch: version=5
   * Remove libboost-system-dev from Build-Depends
     Closes: #1127261
   * Standards-Version: 4.7.3 (routine-update)
   * Remove Priority field to comply with Debian Policy 4.7.3 (routine-
     update)
   * Add Archive and Bug-Database to d/u/metadata
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Files:
 42f9b5c898a5adafbc96d4e9473d7600 13493680 debug optional progressivemauve-dbgsym_1.2.0+4713+dfsg-6_armhf.deb
 544c2b7ff8a8b754253a814eb8349234 6059 science optional progressivemauve_1.2.0+4713+dfsg-6_armhf.buildinfo
 73cb426dd21bbbea58218a6fa06c39f7 694624 science optional progressivemauve_1.2.0+4713+dfsg-6_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: progressivemauve
Binary: progressivemauve progressivemauve-dbgsym
Architecture: armhf
Version: 1.2.0+4713+dfsg-6
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Checksums-Sha1:
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Checksums-Sha256:
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 7999a0c9ab530c48e89be6647918fde8560a576021b2698b73490eacb4f8c328 694624 progressivemauve_1.2.0+4713+dfsg-6_armhf.deb
Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Tue, 24 Feb 2026 22:44:29 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.72-3.1),
 automake (= 1:1.18.1-3),
 autopoint (= 0.23.2-1),
 autotools-dev (= 20240727.1),
 base-files (= 14),
 base-passwd (= 3.6.8),
 bash (= 5.3-2),
 binutils (= 2.46-2),
 binutils-common (= 2.46-2),
 binutils-x86-64-linux-gnu (= 2.46-2),
 bsdextrautils (= 2.41.3-4),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6+b1),
 coreutils (= 9.7-3),
 cpp (= 4:15.2.0-5),
 cpp-15 (= 15.2.0-14),
 cpp-15-x86-64-linux-gnu (= 15.2.0-14),
 cpp-x86-64-linux-gnu (= 4:15.2.0-5),
 dash (= 0.5.12-12),
 debconf (= 1.5.92),
 debhelper (= 13.30),
 debianutils (= 5.23.2),
 dh-autoreconf (= 21+nmu1),
 dh-strip-nondeterminism (= 1.15.0-1),
 diffutils (= 1:3.12-1),
 dpkg (= 1.23.5),
 dpkg-dev (= 1.23.5),
 dwz (= 0.16-2),
 file (= 1:5.46-5+b1),
 findutils (= 4.10.0-3),
 g++ (= 4:15.2.0-5),
 g++-15 (= 15.2.0-14),
 g++-15-x86-64-linux-gnu (= 15.2.0-14),
 g++-x86-64-linux-gnu (= 4:15.2.0-5),
 gcc (= 4:15.2.0-5),
 gcc-15 (= 15.2.0-14),
 gcc-15-base (= 15.2.0-14),
 gcc-15-x86-64-linux-gnu (= 15.2.0-14),
 gcc-x86-64-linux-gnu (= 4:15.2.0-5),
 gettext (= 0.23.2-1),
 gettext-base (= 0.23.2-1),
 grep (= 3.12-1),
 groff-base (= 1.23.0-10),
 gzip (= 1.13-1),
 hostname (= 3.25),
 icu-devtools (= 76.1-4+b1),
 init-system-helpers (= 1.69),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-3),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 15.2.0-14),
 libatomic1 (= 15.2.0-14),
 libattr1 (= 1:2.5.2-4),
 libaudit-common (= 1:4.1.2-1),
 libaudit1 (= 1:4.1.2-1+b1),
 libbinutils (= 2.46-2),
 libblkid1 (= 2.41.3-4),
 libboost-atomic1.83-dev (= 1.83.0-5+b1),
 libboost-atomic1.83.0 (= 1.83.0-5+b1),
 libboost-dev (= 1.83.0.2+b2),
 libboost-filesystem-dev (= 1.83.0.2+b2),
 libboost-filesystem1.83-dev (= 1.83.0-5+b1),
 libboost-filesystem1.83.0 (= 1.83.0-5+b1),
 libboost-iostreams-dev (= 1.83.0.2+b2),
 libboost-iostreams1.83-dev (= 1.83.0-5+b1),
 libboost-iostreams1.83.0 (= 1.83.0-5+b1),
 libboost-program-options-dev (= 1.83.0.2+b2),
 libboost-program-options1.83-dev (= 1.83.0-5+b1),
 libboost-program-options1.83.0 (= 1.83.0-5+b1),
 libboost-regex1.83-dev (= 1.83.0-5+b1),
 libboost-regex1.83.0 (= 1.83.0-5+b1),
 libboost-system1.83-dev (= 1.83.0-5+b1),
 libboost-system1.83.0 (= 1.83.0-5+b1),
 libboost1.83-dev (= 1.83.0-5+b1),
 libbz2-1.0 (= 1.0.8-6+b1),
 libc-bin (= 2.42-13),
 libc-dev-bin (= 2.42-13),
 libc-gconv-modules-extra (= 2.42-13),
 libc6 (= 2.42-13),
 libc6-dev (= 2.42-13),
 libcap-ng0 (= 0.9.1-1),
 libcap2 (= 1:2.75-10+b5),
 libcc1-0 (= 15.2.0-14),
 libcrypt1 (= 1:4.5.1-1),
 libctf-nobfd0 (= 2.46-2),
 libctf0 (= 2.46-2),
 libdb5.3t64 (= 5.3.28+dfsg2-11),
 libdebconfclient0 (= 0.282+b2),
 libdebhelper-perl (= 13.30),
 libdpkg-perl (= 1.23.5),
 libelf1t64 (= 0.194-1),
 libfile-stripnondeterminism-perl (= 1.15.0-1),
 libgcc-15-dev (= 15.2.0-14),
 libgcc-s1 (= 15.2.0-14),
 libgdbm-compat4t64 (= 1.26-1+b1),
 libgdbm6t64 (= 1.26-1+b1),
 libgenome-dev (= 1.3.11+svn20110227.4616-6+b3),
 libgenome0 (= 1.3.11+svn20110227.4616-6+b3),
 libgmp10 (= 2:6.3.0+dfsg-5+b1),
 libgomp1 (= 15.2.0-14),
 libgprofng0 (= 2.46-2),
 libhwasan0 (= 15.2.0-14),
 libicu-dev (= 76.1-4+b1),
 libicu76 (= 76.1-4+b1),
 libisl23 (= 0.27-1+b1),
 libitm1 (= 15.2.0-14),
 libjansson4 (= 2.14-2+b4),
 liblsan0 (= 15.2.0-14),
 liblzma5 (= 5.8.2-2),
 libmagic-mgc (= 1:5.46-5+b1),
 libmagic1t64 (= 1:5.46-5+b1),
 libmd0 (= 1.1.0-2+b2),
 libmems-dev (= 1.6.0+4725-13),
 libmems1t64 (= 1.6.0+4725-13),
 libmount1 (= 2.41.3-4),
 libmpc3 (= 1.3.1-2+b1),
 libmpfr6 (= 4.2.2-2+b1),
 libmuscle-dev (= 3.7+4565-8),
 libmuscle1 (= 3.7+4565-8),
 libpam-modules (= 1.7.0-5+b1),
 libpam-modules-bin (= 1.7.0-5+b1),
 libpam-runtime (= 1.7.0-5),
 libpam0g (= 1.7.0-5+b1),
 libpcre2-8-0 (= 10.46-1+b1),
 libperl5.40 (= 5.40.1-7),
 libpipeline1 (= 1.5.8-2),
 libpkgconf7 (= 2.5.1-4),
 libquadmath0 (= 15.2.0-14),
 libseccomp2 (= 2.6.0-2+b1),
 libselinux1 (= 3.9-4+b1),
 libsframe3 (= 2.46-2),
 libsmartcols1 (= 2.41.3-4),
 libssl3t64 (= 3.5.5-1),
 libstdc++-15-dev (= 15.2.0-14),
 libstdc++6 (= 15.2.0-14),
 libsystemd0 (= 259.1-1),
 libtinfo6 (= 6.6+20251231-1),
 libtool (= 2.5.4-9),
 libtsan2 (= 15.2.0-14),
 libubsan1 (= 15.2.0-14),
 libuchardet0 (= 0.0.8-2+b1),
 libudev1 (= 259.1-1),
 libunistring5 (= 1.3-2+b1),
 libuuid1 (= 2.41.3-4),
 libxml2-16 (= 2.15.1+dfsg-2+b1),
 libzstd1 (= 1.5.7+dfsg-3+b1),
 linux-libc-dev (= 6.18.12-1),
 m4 (= 1.4.21-1),
 make (= 4.4.1-3),
 man-db (= 2.13.1-1),
 mawk (= 1.3.4.20260129-1),
 ncurses-base (= 6.6+20251231-1),
 ncurses-bin (= 6.6+20251231-1),
 openssl-provider-legacy (= 3.5.5-1),
 patch (= 2.8-2),
 perl (= 5.40.1-7),
 perl-base (= 5.40.1-7),
 perl-modules-5.40 (= 5.40.1-7),
 pkgconf (= 2.5.1-4),
 pkgconf-bin (= 2.5.1-4),
 po-debconf (= 1.0.22),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.26),
 sysvinit-utils (= 3.15-6),
 tar (= 1.35+dfsg-4),
 util-linux (= 2.41.3-4),
 xz-utils (= 5.8.2-2),
 zlib1g (= 1:1.3.dfsg+really1.3.1-3)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1771340496"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


progressivemauve-dbgsym_1.2.0+4713+dfsg-6_armhf.deb
---------------------------------------------------

 new Debian package, version 2.0.
 size 13493680 bytes: control archive=1832 bytes.
    1494 bytes,    12 lines      control
    2958 bytes,    28 lines      md5sums
 Package: progressivemauve-dbgsym
 Source: progressivemauve
 Version: 1.2.0+4713+dfsg-6
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 16940
 Depends: progressivemauve (= 1.2.0+4713+dfsg-6)
 Section: debug
 Priority: optional
 Description: debug symbols for progressivemauve
 Build-Ids: 06f32bfda3522819b05ddd7fcc41b4697debaeff 11135a9ee9427d46b257673d0fc395cd85adc997 19bad736685a50566069b0684e4d830cdd69c989 1c01e2653a41281c50f405510b084b03499e5be4 2fc7d07a9a8ea4fe51ce244a47b046060edb3064 33cd6ae3295e2cf990b7e8594db5dcfdff01f683 340c82a7720c7978742e086b8a6367561410d872 4e0aea272dda23d8bededecb5903e4d93d989b09 671d63db1dbd089971f6ffafe5b260ea0dad15aa 68eec02de053d8545da932f2dae3e955e6feb41f 6e6bc94a1389df1d918c40c3b95fcfb7145a40a0 73e91c95ffffb94597dfb692c45cc8871b8bb6d1 77e8bf687538172e6522c84362795f1281e53576 78c605a765193f1881052902b9f116e08c106ad2 7d8afc448c5b340ba4cf8f016044ff0e86186eb7 8d38676f1aff631c9076bd8dc718459189bb65fe 8e494b10b6eb9ea4686ff1debb5a65c486001b79 95b8e94651a6ba02666663e9a9540519f67eb848 975732322d635bb76970646ca5051a3142c0fd1d a4645f6f452d3de0b760c8e9f282a8bb771206be a638fed6aafaa561ffa0610f356307154d87abec ab49f333f005de32942de52bc461ae5ac86852bd c5b259a06179d1f60bd1e086d2c5fcc08a36d355 cd4828f486267c26b3c255dfde36c9e2b4c17f1c d45d6661a945a85cf75c624c6594c88ec2a4dce6 ea50b18778261c0467991c3bb5056971cb6ab816 f75d4b65b05062b0b256757ff56b86eaa732815e

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-rw-r--r-- root/root    384440 2026-02-17 15:01 ./usr/lib/debug/.build-id/a4/645f6f452d3de0b760c8e9f282a8bb771206be.debug
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-rw-r--r-- root/root   1417252 2026-02-17 15:01 ./usr/lib/debug/.build-id/a6/38fed6aafaa561ffa0610f356307154d87abec.debug
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/lib/debug/.build-id/ab/
-rw-r--r-- root/root    389236 2026-02-17 15:01 ./usr/lib/debug/.build-id/ab/49f333f005de32942de52bc461ae5ac86852bd.debug
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/lib/debug/.build-id/c5/
-rw-r--r-- root/root    427728 2026-02-17 15:01 ./usr/lib/debug/.build-id/c5/b259a06179d1f60bd1e086d2c5fcc08a36d355.debug
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/lib/debug/.build-id/cd/
-rw-r--r-- root/root    466520 2026-02-17 15:01 ./usr/lib/debug/.build-id/cd/4828f486267c26b3c255dfde36c9e2b4c17f1c.debug
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-rw-r--r-- root/root    532048 2026-02-17 15:01 ./usr/lib/debug/.build-id/d4/5d6661a945a85cf75c624c6594c88ec2a4dce6.debug
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-rw-r--r-- root/root    601888 2026-02-17 15:01 ./usr/lib/debug/.build-id/ea/50b18778261c0467991c3bb5056971cb6ab816.debug
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-rw-r--r-- root/root    461264 2026-02-17 15:01 ./usr/lib/debug/.build-id/f7/5d4b65b05062b0b256757ff56b86eaa732815e.debug
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root    608372 2026-02-17 15:01 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/progressivemauve.debug
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/share/
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/share/doc/
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/doc/progressivemauve-dbgsym -> progressivemauve


progressivemauve_1.2.0+4713+dfsg-6_armhf.deb
--------------------------------------------

 new Debian package, version 2.0.
 size 694624 bytes: control archive=2512 bytes.
    1963 bytes,    36 lines      control
    2744 bytes,    42 lines      md5sums
 Package: progressivemauve
 Version: 1.2.0+4713+dfsg-6
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3957
 Depends: libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.5), libgenome0 (>= 1.3.11+svn20110227.4616), libmems1t64 (>= 1.6.0+4725), libstdc++6 (>= 14)
 Enhances: mauve-aligner
 Section: science
 Priority: optional
 Homepage: https://darlinglab.org/mauve/user-guide/mauvealigner.html
 Description: multiple genome alignment algorithms
  The mauveAligner and progressiveMauve alignment algorithms have been
  implemented as command-line programs included with the downloadable Mauve
  software.  When run from the command-line, these programs provide options
  not yet available in the graphical interface.
  .
  Mauve is a system for efficiently constructing multiple genome alignments
  in the presence of large-scale evolutionary events such as rearrangement
  and inversion. Multiple genome alignment provides a basis for research
  into comparative genomics and the study of evolutionary dynamics.  Aligning
  whole genomes is a fundamentally different problem than aligning short
  sequences.
  .
  Mauve has been developed with the idea that a multiple genome aligner
  should require only modest computational resources. It employs algorithmic
  techniques that scale well in the amount of sequence being aligned. For
  example, a pair of Y. pestis genomes can be aligned in under a minute,
  while a group of 9 divergent Enterobacterial genomes can be aligned in
  a few hours.
  .
  Mauve computes and interactively visualizes genome sequence comparisons.
  Using FastA or GenBank sequence data, Mauve constructs multiple genome
  alignments that identify large-scale rearrangement, gene gain, gene loss,
  indels, and nucleotide substutition.
  .
  Mauve is developed at the University of Wisconsin.

drwxr-xr-x root/root         0 2026-02-17 15:01 ./
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/bin/
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/addUnalignedIntervals
-rwxr-xr-x root/root    198300 2026-02-17 15:01 ./usr/bin/alignmentProjector
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/backbone_global_to_local
-rwxr-xr-x root/root    263852 2026-02-17 15:01 ./usr/bin/bbAnalyze
-rwxr-xr-x root/root     67172 2026-02-17 15:01 ./usr/bin/bbFilter
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/coordinateTranslate
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/createBackboneMFA
-rwxr-xr-x root/root    132708 2026-02-17 15:01 ./usr/bin/extractBCITrees
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/getAlignmentWindows
-rwxr-xr-x root/root    198300 2026-02-17 15:01 ./usr/bin/getOrthologList
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/makeBadgerMatrix
-rwxr-xr-x root/root    199828 2026-02-17 15:01 ./usr/bin/mauveAligner
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/mauveToXMFA
-rwxr-xr-x root/root     67228 2026-02-17 15:01 ./usr/bin/mfa2xmfa
-rwxr-xr-x root/root    265364 2026-02-17 15:01 ./usr/bin/progressiveMauve
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/projectAndStrip
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/randomGeneSample
-rwxr-xr-x root/root    396476 2026-02-17 15:01 ./usr/bin/repeatoire
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/scoreAlignment
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/stripGapColumns
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/stripSubsetLCBs
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/toGrimmFormat
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/toMultiFastA
-rwxr-xr-x root/root     67228 2026-02-17 15:01 ./usr/bin/toRawSequence
-rwxr-xr-x root/root     67228 2026-02-17 15:01 ./usr/bin/uniqueMerCount
-rwxr-xr-x root/root     67172 2026-02-17 15:01 ./usr/bin/uniquifyTrees
-rwxr-xr-x root/root    132764 2026-02-17 15:01 ./usr/bin/xmfa2maf
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/share/
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/share/doc/
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/share/doc/progressivemauve/
-rw-r--r-- root/root       261 2026-02-17 15:01 ./usr/share/doc/progressivemauve/README.test
-rw-r--r-- root/root       666 2026-02-17 15:01 ./usr/share/doc/progressivemauve/changelog.Debian.gz
-rw-r--r-- root/root       776 2026-02-17 15:01 ./usr/share/doc/progressivemauve/copyright
-rw-r--r-- root/root      1280 2026-02-17 15:01 ./usr/share/doc/progressivemauve/run-unit-test
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/share/doc/progressivemauve/test_data/
-rw-r--r-- root/root      2203 2026-02-17 15:01 ./usr/share/doc/progressivemauve/test_data/all_virii.fasta.gz
-rw-r--r-- root/root      2848 2026-02-17 15:01 ./usr/share/doc/progressivemauve/test_data/genome_1.gbk.gz
-rw-r--r-- root/root      2879 2026-02-17 15:01 ./usr/share/doc/progressivemauve/test_data/genome_2.gbk.gz
-rw-r--r-- root/root      2878 2026-02-17 15:01 ./usr/share/doc/progressivemauve/test_data/genome_3.gbk.gz
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/share/man/
drwxr-xr-x root/root         0 2026-02-17 15:01 ./usr/share/man/man1/
-rw-r--r-- root/root      1122 2026-02-17 15:01 ./usr/share/man/man1/addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/alignmentProjector.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/backbone_global_to_local.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/bbAnalyze.1.gz -> addUnalignedIntervals.1.gz
-rw-r--r-- root/root       515 2026-02-17 15:01 ./usr/share/man/man1/bbFilter.1.gz
-rw-r--r-- root/root       373 2026-02-17 15:01 ./usr/share/man/man1/coordinateTranslate.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/createBackboneMFA.1.gz -> addUnalignedIntervals.1.gz
-rw-r--r-- root/root       525 2026-02-17 15:01 ./usr/share/man/man1/extractBCITrees.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/getAlignmentWindows.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/getOrthologList.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/makeBadgerMatrix.1.gz -> addUnalignedIntervals.1.gz
-rw-r--r-- root/root      1516 2026-02-17 15:01 ./usr/share/man/man1/mauveAligner.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/mauveToXMFA.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/mfa2xmfa.1.gz -> addUnalignedIntervals.1.gz
-rw-r--r-- root/root      1987 2026-02-17 15:01 ./usr/share/man/man1/progressiveMauve.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/projectAndStrip.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/randomGeneSample.1.gz -> addUnalignedIntervals.1.gz
-rw-r--r-- root/root       919 2026-02-17 15:01 ./usr/share/man/man1/repeatoire.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/scoreAlignment.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/stripGapColumns.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/stripSubsetLCBs.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/toGrimmFormat.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/toMultiFastA.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/toRawSequence.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/uniqueMerCount.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/uniquifyTrees.1.gz -> addUnalignedIntervals.1.gz
lrwxrwxrwx root/root         0 2026-02-17 15:01 ./usr/share/man/man1/xmfa2maf.1.gz -> addUnalignedIntervals.1.gz


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1441 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1520 B]
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Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
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  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl
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  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
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  libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl
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  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
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  libunicode-utf8-perl liburi-perl libvariable-magic-perl
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  netbase openssl patchutils perl-openssl-defaults plzip procps
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Suggested packages:
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  libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch
  libtext-template-perl python3 readline-doc zip
Recommended packages:
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  libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common
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  libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl
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The following NEW packages will be installed:
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  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl
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  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
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  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
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  libdevel-stacktrace-perl libdynaloader-functions-perl
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  libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0
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  libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
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  libio-interactive-perl libio-socket-ssl-perl libio-string-perl
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  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl
  libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl
  libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl
  libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl
  libunicode-utf8-perl liburi-perl libvariable-magic-perl
  libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2
  libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop
  netbase openssl patchutils perl-openssl-defaults plzip procps
  readline-common sbuild-build-depends-lintian-dummy:armhf shared-mime-info
  t1utils ucf unzip
0 upgraded, 177 newly installed, 0 to remove and 0 not upgraded.
Need to get 24.4 MB of archives.
After this operation, 93.0 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b1 [66.1 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-9+b1 [883 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.5-1 [1500 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20260223 [158 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9532 B]
Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.87.2-3 [1552 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4+b1 [110 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.26.2-2 [470 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2 [50.4 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.12-3 [1520 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b8 [25.1 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b1 [9784 B]
Get:26 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [195 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.68.0-1 [79.8 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b2 [59.8 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3+b1 [60.7 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1+b1 [245 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.19.0~rc2-2 [407 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9.4-1 [312 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.0.1-1+b1 [133 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.24-2 [63.7 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.1.2-1 [227 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.1.2-1 [566 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.68-1 [35.2 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.58-2 [89.7 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2+b1 [62.1 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-3+b1 [871 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.8-5 [129 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b2 [136 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3+b1 [23.6 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-9 [920 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.8-5 [639 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.20.1-1 [3319 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43 [68.4 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b3 [10.6 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-3 [15.3 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b5 [22.5 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:63 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2 [122 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.34-2 [111 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b3 [99.7 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.71-1 [217 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get:72 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b2 [13.9 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:80 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:82 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.40-1 [132 kB]
Get:83 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3 [32.6 kB]
Get:89 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB]
Get:91 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.86-1 [24.1 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:99 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:100 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:101 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:102 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:103 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB]
Get:104 http://localhost:3142/debian unstable/main amd64 libfile-libmagic-perl amd64 1.23-2+b2 [31.1 kB]
Get:105 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:106 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:107 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:108 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:110 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:111 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:112 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:113 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB]
Get:114 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB]
Get:115 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:116 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:117 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:118 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:119 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:120 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3+b1 [342 kB]
Get:121 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.098-1 [229 kB]
Get:122 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB]
Get:123 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:124 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:125 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.81-1 [186 kB]
Get:126 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:127 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:128 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB]
Get:129 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB]
Get:130 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get:131 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:132 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB]
Get:133 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:134 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.16~rc1-3 [39.8 kB]
Get:135 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB]
Get:136 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1+b1 [36.5 kB]
Get:137 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:138 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:139 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB]
Get:140 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:141 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:142 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-3 [6996 B]
Get:143 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.1-1 [143 kB]
Get:144 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:145 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-4 [11.0 kB]
Get:146 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1+b1 [12.5 kB]
Get:147 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:148 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB]
Get:149 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB]
Get:150 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get:151 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1+b1 [42.3 kB]
Get:152 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:153 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB]
Get:154 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB]
Get:155 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:156 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.49-1 [66.1 kB]
Get:157 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1 [27.4 kB]
Get:158 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get:159 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B]
Get:160 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB]
Get:161 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b2 [174 kB]
Get:162 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:163 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.46-1 [78.2 kB]
Get:164 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.64-1 [19.0 kB]
Get:165 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.20-1 [117 kB]
Get:166 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:167 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:168 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
Get:169 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-7 [314 kB]
Get:170 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB]
Get:171 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.904.0+ds-1 [46.9 kB]
Get:172 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.13~rc1-3 [66.7 kB]
Get:173 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:174 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.3-1 [79.1 kB]
Get:175 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:176 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB]
Get:177 http://localhost:3142/debian unstable/main amd64 lintian all 2.130.0 [1068 kB]
Preconfiguring packages ...
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Selecting previously unselected package netbase.
(Reading database ... 36139 files and directories currently installed.)
Preparing to unpack .../000-netbase_6.5_all.deb ...
Unpacking netbase (6.5) ...
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Preparing to unpack .../001-libncursesw6_6.6+20251231-1_amd64.deb ...
Unpacking libncursesw6:amd64 (6.6+20251231-1) ...
Selecting previously unselected package libproc2-0:amd64.
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Unpacking libproc2-0:amd64 (2:4.0.4-9+b1) ...
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Preparing to unpack .../003-procps_2%3a4.0.4-9+b1_amd64.deb ...
Unpacking procps (2:4.0.4-9+b1) ...
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Unpacking readline-common (8.3-4) ...
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Preparing to unpack .../005-openssl_3.5.5-1_amd64.deb ...
Unpacking openssl (3.5.5-1) ...
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Unpacking ca-certificates (20260223) ...
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Unpacking libtext-charwidth-perl:amd64 (0.04-11+b5) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../008-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
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Preparing to unpack .../009-ucf_3.0052_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0052) ...
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Unpacking libffi8:amd64 (3.5.2-3+b1) ...
Selecting previously unselected package libglib2.0-0t64:amd64.
Preparing to unpack .../011-libglib2.0-0t64_2.87.2-3_amd64.deb ...
Unpacking libglib2.0-0t64:amd64 (2.87.2-3) ...
Selecting previously unselected package shared-mime-info.
Preparing to unpack .../012-shared-mime-info_2.4-5+b3_amd64.deb ...
Unpacking shared-mime-info (2.4-5+b3) ...
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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
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Setting up libapt-pkg-perl (0.1.43) ...
Setting up liblz1:amd64 (1.16~rc1-3) ...
Setting up libberkeleydb-perl:amd64 (0.66-2) ...
Setting up plzip (1.13~rc1-3) ...
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode
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Setting up libdata-messagepack-perl (1.02-3) ...
Setting up libclass-inspector-perl (1.36-3) ...
Setting up libdynaloader-functions-perl (0.004-2) ...
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Setting up liblist-compare-perl (0.55-2) ...
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Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ...
Setting up libsub-identify-perl (0.14-4) ...
Setting up libcpanel-json-xs-perl:amd64 (4.40-1) ...
Setting up libhtml-tagset-perl (3.24-1) ...
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Setting up unzip (6.0-29) ...
Setting up libbrotli1:amd64 (1.2.0-3) ...
Setting up libsqlite3-0:amd64 (3.46.1-9) ...
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Setting up libnghttp2-14:amd64 (1.68.0-1) ...
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Setting up netbase (6.5) ...
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Setting up libssh2-1t64:amd64 (1.11.1-1+b1) ...
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Setting up libperlio-gzip-perl (0.20-1+b4) ...
Setting up readline-common (8.3-4) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.004+ds-1+b3) ...
Setting up libmarkdown2:amd64 (2.2.7-2.1+b1) ...
Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ...
Setting up liburi-perl (5.34-2) ...
Setting up iso-codes (4.20.1-1) ...
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Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b4) ...
Setting up libnet-ssleay-perl:amd64 (1.94-3+b1) ...
Setting up libksba8:amd64 (1.6.7-2+b2) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libfile-basedir-perl (0.09-2) ...
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Setting up libpsl5t64:amd64 (0.21.2-1.1+b2) ...
Setting up libnet-http-perl (6.24-1) ...
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Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-3) ...
Setting up ca-certificates (20260223) ...
Updating certificates in /etc/ssl/certs...
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Setting up libglib2.0-0t64:amd64 (2.87.2-3) ...
No schema files found: doing nothing.
Setting up libdata-validate-uri-perl (0.07-3) ...
Setting up libxs-parse-keyword-perl (0.49-1) ...
Setting up shared-mime-info (2.4-5+b3) ...
Setting up libp11-kit0:amd64 (0.26.2-2) ...
Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up ucf (3.0052) ...
Setting up libreadline8t64:amd64 (8.3-4) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libsyntax-keyword-try-perl (0.31-1) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b3) ...
Setting up gpgconf (2.4.8-5) ...
Setting up libio-socket-ssl-perl (2.098-1) ...
Setting up gpg (2.4.8-5) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.01-1) ...
Setting up libhtml-form-perl (6.13-1) ...
Setting up libgnutls30t64:amd64 (3.8.12-3) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libxmlb2:amd64 (0.3.24-2) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b5) ...
Setting up libcgi-pm-perl (4.71-1) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libmodule-runtime-perl (0.018-1) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3+b1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-7) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.60-1) ...
Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up libcurl3t64-gnutls:amd64 (8.19.0~rc2-2) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libappstream5:amd64 (1.1.2-1) ...
Setting up appstream (1.1.2-1) ...
✔ Metadata cache was updated successfully.
Setting up libmoox-aliases-perl (0.001006-3) ...
Setting up libb-hooks-endofscope-perl (0.28-2) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.81-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.20-1) ...
Setting up lintian (2.130.0) ...
Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Processing triggers for libc-bin (2.42-13) ...
Processing triggers for man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for ca-certificates (20260223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 266
Distribution: unstable
Foreign Architectures: armhf
Host Architecture: armhf
Install-Time: 11
Job: progressivemauve_1.2.0+4713+dfsg-6
Lintian: pass
Machine Architecture: amd64
Package: progressivemauve
Package-Time: 286
Source-Version: 1.2.0+4713+dfsg-6
Space: n/a
Status: successful
Version: 1.2.0+4713+dfsg-6
--------------------------------------------------------------------------------
Finished at 2026-02-24T22:44:29Z
Build needed 00:04:46, no disk space