sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | proteinortho 6.0.13+dfsg-1 (armhf) Mon, 03 Feb 2020 21:45:40 +0000 | +==============================================================================+ Package: proteinortho Version: 6.0.13+dfsg-1 Source Version: 6.0.13+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-0c43159d-fee9-44cd-ac9b-32467c294b08' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-cQ00n0/resolver-sf3FiU' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-03-0815.09.pdiff [27.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-03-1411.12.pdiff [12.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-03-2014.24.pdiff [16.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-03-2014.24.pdiff [16.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-03-0815.09.pdiff [23.4 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-03-1411.12.pdiff [12.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-03-2014.24.pdiff [10.7 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-03-2014.24.pdiff [10.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armhf Packages [7980 kB] Fetched 8281 kB in 2s (4052 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev zlib1g 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After this operation, 8192 B disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 zlib1g amd64 1:1.2.11.dfsg-1.2 [90.3 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5 amd64 9.2.1-26 [390 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9 amd64 9.2.1-26 [10.0 MB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev amd64 9.2.1-26 [2346 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9 amd64 9.2.1-26 [9703 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-base amd64 9.2.1-26 [195 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.7 MB in 0s (64.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12786 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1.2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1.2) over (1:1.2.11.dfsg-1.1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12786 files and directories currently installed.) Preparing to unpack .../libasan5_9.2.1-26_amd64.deb ... Unpacking libasan5:amd64 (9.2.1-26) over (9.2.1-25) ... Preparing to unpack .../gcc-9_9.2.1-26_amd64.deb ... Unpacking gcc-9 (9.2.1-26) over (9.2.1-25) ... Preparing to unpack .../libgcc-9-dev_9.2.1-26_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.2.1-26) over (9.2.1-25) ... Preparing to unpack .../cpp-9_9.2.1-26_amd64.deb ... Unpacking cpp-9 (9.2.1-26) over (9.2.1-25) ... Preparing to unpack .../gcc-9-base_9.2.1-26_amd64.deb ... Unpacking gcc-9-base:amd64 (9.2.1-26) over (9.2.1-25) ... Setting up gcc-9-base:amd64 (9.2.1-26) ... Setting up libasan5:amd64 (9.2.1-26) ... Setting up cpp-9 (9.2.1-26) ... Setting up libgcc-9-dev:amd64 (9.2.1-26) ... Setting up gcc-9 (9.2.1-26) ... Processing triggers for libc-bin (2.29-9) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proteinortho.git Please use: git clone https://salsa.debian.org/med-team/proteinortho.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 276 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main proteinortho 6.0.13+dfsg-1 (dsc) [2148 B] Get:2 http://debian.oregonstate.edu/debian unstable/main proteinortho 6.0.13+dfsg-1 (tar) [266 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main proteinortho 6.0.13+dfsg-1 (diff) [7560 B] Fetched 276 kB in 0s (24.0 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/proteinortho-cQ00n0/proteinortho-6.0.13+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-cQ00n0' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner, procps, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 12), ncbi-blast+, liblapack-dev, diamond-aligner, procps, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [453 B] Get:5 copy:/<>/apt_archive ./ Packages [521 B] Fetched 1931 B in 0s (98.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils build-essential cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:armhf dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-base:armhf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libblas-dev:armhf libblas3:armhf libbsd0 libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc-s1:armhf libgcc1-armhf-cross libgfortran5:armhf libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu63 libio-string-perl liblapack-dev:armhf liblapack3:armhf liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec2 libncurses6 libpipeline1 libprocps7 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline8 libsigsegv2 libsqlite3-0 libssl1.1 libstdc++-9-dev libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db mime-support ncbi-blast+ ncbi-data po-debconf procps python3 python3-minimal python3.7 python3.7-minimal readline-common sensible-utils ucf zlib1g:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:armhf glibc-doc:armhf libc-l10n:armhf locales:armhf glibc-doc manpages-dev:armhf libstdc++-9-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.7-venv python3.7-doc binfmt-support readline-doc Recommended packages: med-config:armhf curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdmainutils build-essential cpp-9-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:armhf dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-base:armhf gcc-9-arm-linux-gnueabihf gcc-9-arm-linux-gnueabihf-base gcc-9-base:armhf gcc-9-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan5-armhf-cross libatomic1:armhf libatomic1-armhf-cross libblas-dev:armhf libblas3:armhf libbsd0 libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armhf libgcc-9-dev-armhf-cross libgcc-s1:armhf libgcc1-armhf-cross libgfortran5:armhf libglib2.0-0 libgomp1:armhf libgomp1-armhf-cross libicu63 libio-string-perl liblapack-dev:armhf liblapack3:armhf liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec2 libncurses6 libpipeline1 libprocps7 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline8 libsigsegv2 libsqlite3-0 libssl1.1 libstdc++-9-dev libstdc++-9-dev:armhf libstdc++-9-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db mime-support ncbi-blast+ ncbi-data po-debconf procps python3 python3-minimal python3.7 python3.7-minimal readline-common sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 435 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.7-minimal amd64 3.7.6-1+b1 [591 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 python3.7-minimal amd64 3.7.6-1+b1 [1813 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.7.5-3 [36.8 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 mime-support all 3.64 [37.8 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-1 [660 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.7-stdlib amd64 3.7.6-1+b1 [1735 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 python3.7 amd64 3.7.6-1+b1 [351 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.7.5-3 [20.2 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.7.5-3 [62.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main armhf gcc-10-base armhf 10-20200202-1 [195 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.2.1-26 [195 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2+b1 [62.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2+b1 [259 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.34-2 [2748 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.10-10 [104 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-9 [2636 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-26 [1676 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-26 [10.7 MB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf-base amd64 9.2.1-21cross1 [194 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [6813 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [16.7 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.29-9cross1 [1110 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:9.2.1-21cross1 [37.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 9.2.1-21cross1 [73.2 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 9.2.1-21cross1 [6624 B] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.2.1-21cross1 [362 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 9.2.1-21cross1 [392 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 9.2.1-21cross1 [112 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armhf-cross all 9.2.1-21cross1 [664 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [7159 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1476 B] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.4.8-1cross1 [1128 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.29-9cross1 [2110 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armhf-cross all 9.2.1-21cross1 [1720 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabihf amd64 9.2.1-21cross1 [7390 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:9.2.1-3.1 [1184 B] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.8 [6644 B] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 10-20200202-1 [36.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.10-10 [101 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.29-9 [2328 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 10-20200202-1 [422 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-1.2 [85.3 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armhf diamond-aligner armhf 0.9.29+dfsg-5 [435 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.2.1-26 [369 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 10-20200202-1 [6916 B] Get:106 http://debian.oregonstate.edu/debian unstable/main armhf libblas3 armhf 3.9.0-1 [113 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armhf libblas-dev armhf 3.9.0-1 [123 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.4.13-1 [1040 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.10-10 [120 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.29-9 [2129 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 10-20200202-1 [84.4 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 10-20200202-1 [116 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.2.1-26 [664 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armhf libgfortran5 armhf 10-20200202-1 [238 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armhf liblapack3 armhf 3.9.0-1 [1747 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armhf liblapack-dev armhf 3.9.0-1 [1827 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 liblmdb0 amd64 0.9.22-1 [45.0 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedcrypto3 amd64 2.16.4-1 [213 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedx509-0 amd64 2.16.4-1 [104 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedtls12 amd64 2.16.4-1 [134 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.2.1-26 [1721 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg1-7 [3555 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 ncbi-blast+ amd64 2.9.0-3 [11.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 105 MB in 2s (50.5 MB/s) Selecting previously unselected package libbsd0:amd64. 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Setting up liblmdb0:amd64 (0.9.22-1) ... Setting up ncbi-data (6.1.20170106+dfsg1-7) ... Setting up libfile-which-perl (1.23-1) ... Setting up libc6-armhf-cross (2.29-9cross1) ... Setting up mime-support (3.64) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-2) ... No schema files found: doing nothing. Setting up libprocps7:amd64 (2:3.3.15-2+b1) ... Setting up libdebhelper-perl (12.9) ... Setting up libsqlite3-0:amd64 (3.31.1-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up linux-libc-dev:armhf (5.4.13-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up gcc-9-arm-linux-gnueabihf-base:amd64 (9.2.1-21cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:armhf (10-20200202-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up linux-libc-dev-armhf-cross (5.4.8-1cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.2.1-21cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2+b1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libmbedcrypto3:amd64 (2.16.4-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.29-9) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up binutils-arm-linux-gnueabihf (2.34-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-3) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:armhf (9.2.1-26) ... Setting up libgomp1-armhf-cross (9.2.1-21cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libstdc++-9-dev:amd64 (9.2.1-26) ... Setting up libtool (2.4.6-11) ... Setting up cpp-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libmbedx509-0:amd64 (2.16.4-1) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libc6-dev-armhf-cross (2.29-9cross1) ... Setting up libmbedtls12:amd64 (2.16.4-1) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-armhf-cross (9.2.1-21cross1) ... Setting up libgcc1-armhf-cross (1:9.2.1-21cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-26) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up cpp-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.7-stdlib:amd64 (3.7.6-1+b1) ... Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.2.1-21cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++6-armhf-cross (9.2.1-21cross1) ... Setting up libubsan1-armhf-cross (9.2.1-21cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-armhf-cross (9.2.1-21cross1) ... Setting up libpython3-stdlib:amd64 (3.7.5-3) ... Setting up python3.7 (3.7.6-1+b1) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.5-3) ... Setting up ncbi-blast+ (2.9.0-3) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libstdc++-9-dev-armhf-cross (9.2.1-21cross1) ... Setting up gcc-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-9-arm-linux-gnueabihf (9.2.1-21cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-arm-linux-gnueabihf (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.8) ... Setting up libcrypt1:armhf (1:4.4.10-10) ... Setting up libgcc-s1:armhf (10-20200202-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:armhf (2.29-9) ... Setting up libcrypt-dev:armhf (1:4.4.10-10) ... Setting up libc6-dev:armhf (2.29-9) ... Setting up libstdc++6:armhf (10-20200202-1) ... Setting up debhelper (12.9) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-1.2) ... Setting up libgomp1:armhf (10-20200202-1) ... Setting up diamond-aligner:armhf (0.9.29+dfsg-5) ... Setting up libasan5:armhf (9.2.1-26) ... Setting up libblas3:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libatomic1:armhf (10-20200202-1) ... Setting up libgfortran5:armhf (10-20200202-1) ... Setting up libubsan1:armhf (10-20200202-1) ... Setting up libblas-dev:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up liblapack3:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libgcc-9-dev:armhf (9.2.1-26) ... Setting up liblapack-dev:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libstdc++-9-dev:armhf (9.2.1-26) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.29-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.34-2 dpkg-dev_1.19.7 g++-9_9.2.1-26 gcc-8_8.3.0-26 gcc-9_9.2.1-26 libc6-dev_2.29-9 libstdc++-9-dev_9.2.1-26 libstdc++-9-dev-armhf-cross_9.2.1-21cross1 libstdc++6_10-20200202-1 libstdc++6-armhf-cross_9.2.1-21cross1 linux-libc-dev_5.4.13-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-2 binutils-arm-linux-gnueabihf_2.34-2 binutils-common_2.34-2 binutils-x86-64-linux-gnu_2.34-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-26 cpp-9_9.2.1-26 cpp-9-arm-linux-gnueabihf_9.2.1-21cross1 cpp-arm-linux-gnueabihf_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diamond-aligner_0.9.29+dfsg-5 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-26 g++-9-arm-linux-gnueabihf_9.2.1-21cross1 g++-arm-linux-gnueabihf_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200202-1 gcc-8_8.3.0-26 gcc-8-base_8.3.0-26 gcc-9_9.2.1-26 gcc-9-arm-linux-gnueabihf_9.2.1-21cross1 gcc-9-arm-linux-gnueabihf-base_9.2.1-21cross1 gcc-9-base_9.2.1-26 gcc-9-cross-base_9.2.1-21cross1 gcc-arm-linux-gnueabihf_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-26 libasan5-armhf-cross_9.2.1-21cross1 libatomic1_10-20200202-1 libatomic1-armhf-cross_9.2.1-21cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-2 libblas-dev_3.9.0-1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-9 libc-dev-bin_2.29-9 libc6_2.29-9 libc6-armhf-cross_2.29-9cross1 libc6-dev_2.29-9 libc6-dev-armhf-cross_2.29-9cross1 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200202-1 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-2 libctf0_2.34-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-26 libgcc-9-dev_9.2.1-26 libgcc-9-dev-armhf-cross_9.2.1-21cross1 libgcc-s1_10-20200202-1 libgcc1_1:10-20200202-1 libgcc1-armhf-cross_1:9.2.1-21cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200202-1 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-3 libgnutls30_3.6.11.1-2 libgomp1_10-20200202-1 libgomp1-armhf-cross_9.2.1-21cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_10-20200202-1 liblapack-dev_3.9.0-1 liblapack3_3.9.0-1 liblmdb0_0.9.22-1 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libstdc++-9-dev_9.2.1-26 libstdc++-9-dev-armhf-cross_9.2.1-21cross1 libstdc++6_10-20200202-1 libstdc++6-armhf-cross_9.2.1-21cross1 libsub-override-perl_0.09-2 libsystemd0_244.1-2 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_10-20200202-1 libubsan1_10-20200202-1 libubsan1-armhf-cross_9.2.1-21cross1 libuchardet0_0.0.6-3 libudev1_244.1-2 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-8 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.13-1 linux-libc-dev-armhf-cross_5.4.8-1cross1 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 mime-support_3.64 mount_2.34-0.1 ncbi-blast+_2.9.0-3 ncbi-data_6.1.20170106+dfsg1-7 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 procps_2:3.3.15-2+b1 python3_3.7.5-3 python3-minimal_3.7.5-3 python3.7_3.7.6-1+b1 python3.7-minimal_3.7.6-1+b1 readline-common_8.0-3 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1.2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: proteinortho Binary: proteinortho Architecture: any Version: 6.0.13+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/proteinortho Vcs-Git: https://salsa.debian.org/med-team/proteinortho.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner, procps Package-List: proteinortho deb science optional arch=any Checksums-Sha1: 7c69201e3c8972c22029a3328b4fbb41badf496b 266164 proteinortho_6.0.13+dfsg.orig.tar.xz 685b28428b8d47a351f1cde436a33d28bb22c52c 7560 proteinortho_6.0.13+dfsg-1.debian.tar.xz Checksums-Sha256: 6cfac27509d092be78161b835c77709843c4116e833a52c3312a9afe0fb1ed79 266164 proteinortho_6.0.13+dfsg.orig.tar.xz 665adf05a555e2a988fdb29c2c49ee990d7e0bdb9e92df3da03ab736e53ce31c 7560 proteinortho_6.0.13+dfsg-1.debian.tar.xz Files: 74a00aecb7e6086a40315a991a160c39 266164 proteinortho_6.0.13+dfsg.orig.tar.xz 15302fb994d5ac2c06372c5d368a265b 7560 proteinortho_6.0.13+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl43WqwTHG1vZWxsZXJA 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84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proteinortho_6.0.13+dfsg-1.dsc dpkg-source: info: extracting proteinortho in /<> dpkg-source: info: unpacking proteinortho_6.0.13+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_6.0.13+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3 dpkg-source: info: applying hardening dpkg-source: info: applying deb_diamond dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-0c43159d-fee9-44cd-ac9b-32467c294b08 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.0.13+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -rf src/BUILD test/C.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[2]: Leaving directory '/<>' rm -f remove.graph test_blastp.blast-graph test_blastp.info test_blastp.proteinortho-graph test_blastp.proteinortho-graph.summary test_blastp.proteinortho.html test_blastp.proteinortho.tsv test_lastp.blast-graph test_lastp.info test_lastp.proteinortho-graph test_lastp.proteinortho-graph.summary test_lastp.proteinortho.html test_lastp.proteinortho.tsv test_synteny.blast-graph test_synteny.ffadj-graph test_synteny.info test_synteny.poff-graph test_synteny.poff.html test_synteny.poff.tsv test_synteny.proteinortho-graph test_synteny.proteinortho-graph.summary test_synteny.proteinortho.html test_synteny.proteinortho.tsv test_synteny.poff-graph.summary make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[1]: Entering directory '/<>' Creating build directory ... [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) arm-linux-gnueabihf-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wno-unused-result -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive && ([ $? -eq 0 ] && echo "......OK dynamic linking was successful for proteinortho_clustering!";) || ( \ echo "......dynamic linking failed too, now I try dynamic linking without -WL,-whole-archive (this should now work for OSX)."; \ arm-linux-gnueabihf-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wno-unused-result -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -lpthread && ([ $? -eq 0 ] && echo "......OK dynamic linking was successful for proteinortho_clustering!";) || ( \ echo "......dynamic linking failed (without -WL,-whole-archive) too too, now I try to openblas."; \ arm-linux-gnueabihf-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wno-unused-result -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -lopenblas -pthread -lpthread && ([ $? -eq 0 ] && echo "......OK dynamic linking was successful for proteinortho_clustering!";) || ( \ echo "......last linking failed too too too, now I try to recompile lapack (v.3.8.0) and then compile proteinortho_clustering with dynamic linking."; \ echo "......[ 33%] Extracting the LAPACK library"; \ if [ ! -d src/lapack-3.8.0 ]; then cd src; tar -xzvf lapack-3.8.0.tar.gz > /dev/null 2>&1; cd ..; fi; \ echo "......[ 66%] Compiling the LAPACK library (using cmake + make)"; \ if [ ! -f src/lapack-3.8.0/build/lib/liblapack.a ]; then mkdir src/lapack-3.8.0/build 2> /dev/null; cd src/lapack-3.8.0/build; cmake .. -DCMAKE_CXX_COMPILER=arm-linux-gnueabihf-g++ > /dev/null; make all -j4 > /dev/null 2>&1; cd ../../.. ; fi; \ echo "......[ 99%] Building **proteinortho_clustering** with LAPACK (dynamic linking)"; \ arm-linux-gnueabihf-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wno-unused-result -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Isrc/lapack-3.8.0/build/include/ -Lsrc/lapack-3.8.0/build/lib/ -llapack -lblas -Wl,-z,relro -Wl,-z,now -lgfortran && echo "......OK dynamic linking was successful for proteinortho_clustering!" || ( echo "" ) ; ) ) ) In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:72, from src/proteinortho_clustering.cpp:24: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ConnectedComponent&}; _Tp = ConnectedComponent; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from src/proteinortho_clustering.cpp:22: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from src/proteinortho_clustering.cpp:22: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = ConnectedComponent; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from src/proteinortho_clustering.cpp:22: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1671 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/vector:67, from src/proteinortho_clustering.cpp:24: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h: In function ‘void partition_graph()’: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/9/algorithm:62, from src/proteinortho_clustering.cpp:22: /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ......OK dynamic linking was successful for proteinortho_clustering! [ 25%] Building **graphMinusRemovegraph** arm-linux-gnueabihf-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wno-unused-result -o src/BUILD/Linux_x86_64/proteinortho_graphMinusRemovegraph src/graphMinusRemovegraph.cpp -Wl,-z,relro -Wl,-z,now [ 50%] Building **cleanupblastgraph** arm-linux-gnueabihf-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wno-unused-result -o src/BUILD/Linux_x86_64/proteinortho_cleanupblastgraph src/cleanupblastgraph.cpp -Wl,-z,relro -Wl,-z,now [ 75%] Building **po_tree** arm-linux-gnueabihf-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o src/BUILD/Linux_x86_64/proteinortho_treeBuilderCore src/po_tree.c -Wl,-z,relro -Wl,-z,now src/po_tree.c: In function ‘fetch_matrix’: src/po_tree.c:330:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 330 | fscanf (datei, "%d\n", viecher); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/po_tree.c:341:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 341 | fscanf (datei, "%s ",(*pnamen)[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/po_tree.c:345:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 345 | fscanf (datei, "%s \n",(*pnamen)[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/po_tree.c:378:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 378 | fscanf (datei, "%c ",&(matrix[i][*ccs])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/po_tree.c:381:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 381 | fscanf (datei, "%c \n",&(matrix[(*viecher)-1][*ccs])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Everything is compiled with no errors. make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --buildsystem=makefile -- install PREFIX=/<>/debian/proteinortho/usr/lib/proteinortho make -j1 install DESTDIR=/<>/proteinortho-6.0.13\+dfsg/debian/proteinortho AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" install PREFIX=/<>/proteinortho-6.0.13\+dfsg/debian/proteinortho/usr/lib/proteinortho make[2]: Entering directory '/<>' INSTALLING everything to /<>/debian/proteinortho/usr/lib/proteinortho 'proteinortho6.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho6.pl' 'proteinortho' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho' 'src/BUILD/Linux_x86_64/proteinortho_extract_from_graph.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_extract_from_graph.pl' 'src/BUILD/Linux_x86_64/proteinortho_formatUsearch.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_formatUsearch.pl' 'src/BUILD/Linux_x86_64/proteinortho_compareProteinorthoGraphs.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_compareProteinorthoGraphs.pl' 'src/BUILD/Linux_x86_64/proteinortho_do_mcl.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_do_mcl.pl' 'src/BUILD/Linux_x86_64/proteinortho2html.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho2html.pl' 'src/BUILD/Linux_x86_64/proteinortho2xml.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho2xml.pl' 'src/BUILD/Linux_x86_64/proteinortho_clustering' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_clustering' 'src/BUILD/Linux_x86_64/proteinortho_singletons.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_singletons.pl' 'src/BUILD/Linux_x86_64/proteinortho_ffadj_mcs.py' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_ffadj_mcs.py' 'src/BUILD/Linux_x86_64/proteinortho2tree.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho2tree.pl' 'src/BUILD/Linux_x86_64/proteinortho_history.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_history.pl' 'src/BUILD/Linux_x86_64/proteinortho_cleanupblastgraph' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_cleanupblastgraph' 'src/BUILD/Linux_x86_64/proteinortho_graphMinusRemovegraph' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_graphMinusRemovegraph' 'src/BUILD/Linux_x86_64/proteinortho_treeBuilderCore' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_treeBuilderCore' 'src/BUILD/Linux_x86_64/proteinortho_grab_proteins.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_grab_proteins.pl' 'src/BUILD/Linux_x86_64/proteinortho_summary.pl' -> '/<>/debian/proteinortho/usr/lib/proteinortho/proteinortho_summary.pl' Everything installed successfully to /<>/debian/proteinortho/usr/lib/proteinortho. If needed you can add /<>/debian/proteinortho/usr/lib/proteinortho to $PATH with 'export PATH=$PATH:/<>/debian/proteinortho/usr/lib/proteinortho'. make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian \( -name "*.faa" -o -name "*.gff" \) -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/proteinortho/usr/lib/proteinortho/proteinortho_graphMinusRemovegraph contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/proteinortho/usr/lib/proteinortho/proteinortho_clustering contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/proteinortho/usr/lib/proteinortho/proteinortho_cleanupblastgraph contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'proteinortho' in '../proteinortho_6.0.13+dfsg-1_armhf.deb'. dpkg-deb: building package 'proteinortho-dbgsym' in '../proteinortho-dbgsym_6.0.13+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../proteinortho_6.0.13+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-02-03T21:46:53Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ proteinortho_6.0.13+dfsg-1_armhf.changes: ----------------------------------------- Format: 1.8 Date: Mon, 03 Feb 2020 00:24:13 +0100 Source: proteinortho Binary: proteinortho proteinortho-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 6.0.13+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: proteinortho - Detection of (Co-)orthologs in large-scale protein analysis Changes: proteinortho (6.0.13+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: f193fac62be985d454dd5f97fc4358a0c28ab046 949540 proteinortho-dbgsym_6.0.13+dfsg-1_armhf.deb fe6f8411e20236813659c462883752b78b94f065 5752 proteinortho_6.0.13+dfsg-1_armhf.buildinfo 616a0fa5a40cc7f9269e39c2aaff197ceddb0a88 202944 proteinortho_6.0.13+dfsg-1_armhf.deb Checksums-Sha256: ae169462a386a466863016a386b41b4c48aa8c62539d33d94d4381ae712dd485 949540 proteinortho-dbgsym_6.0.13+dfsg-1_armhf.deb 6b2b007d98e1ab8f1550ab5d79638cff8ad5adbae3f98a3eac12a73111f0d041 5752 proteinortho_6.0.13+dfsg-1_armhf.buildinfo 766e7d261d9999775e075f5f445f7bb9f7c37492dd6d1ffb36fdda2ed1eecd45 202944 proteinortho_6.0.13+dfsg-1_armhf.deb Files: 0f89277dc31d22b67df8b9117c938afb 949540 debug optional proteinortho-dbgsym_6.0.13+dfsg-1_armhf.deb 991fea125de7922b9ef1dedd38b8fb62 5752 science optional proteinortho_6.0.13+dfsg-1_armhf.buildinfo f7e8420433edcad06a546fbc39f872d0 202944 science optional proteinortho_6.0.13+dfsg-1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: proteinortho Binary: proteinortho Architecture: armhf Version: 6.0.13+dfsg-1 Checksums-Md5: 0f89277dc31d22b67df8b9117c938afb 949540 proteinortho-dbgsym_6.0.13+dfsg-1_armhf.deb f7e8420433edcad06a546fbc39f872d0 202944 proteinortho_6.0.13+dfsg-1_armhf.deb Checksums-Sha1: f193fac62be985d454dd5f97fc4358a0c28ab046 949540 proteinortho-dbgsym_6.0.13+dfsg-1_armhf.deb 616a0fa5a40cc7f9269e39c2aaff197ceddb0a88 202944 proteinortho_6.0.13+dfsg-1_armhf.deb Checksums-Sha256: ae169462a386a466863016a386b41b4c48aa8c62539d33d94d4381ae712dd485 949540 proteinortho-dbgsym_6.0.13+dfsg-1_armhf.deb 766e7d261d9999775e075f5f445f7bb9f7c37492dd6d1ffb36fdda2ed1eecd45 202944 proteinortho_6.0.13+dfsg-1_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 03 Feb 2020 21:46:52 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-5), binutils (= 2.34-2), binutils-common (= 2.34-2), binutils-x86-64-linux-gnu (= 2.34-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-26), cpp-9 (= 9.2.1-26), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.9), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diamond-aligner (= 0.9.29+dfsg-5), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-26), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200202-1), gcc-8 (= 8.3.0-26), gcc-8-base (= 8.3.0-26), gcc-9 (= 9.2.1-26), gcc-9-base (= 9.2.1-26), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.9-3+b1), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-26), libatomic1 (= 10-20200202-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.34-2), libblas-dev (= 3.9.0-1), libblas3 (= 3.9.0-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-9), libc-dev-bin (= 2.29-9), libc6 (= 2.29-9), libc6-dev (= 2.29-9), libcap-ng0 (= 0.7.9-2.1+b1), libcc1-0 (= 10-20200202-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10), libcrypt1 (= 1:4.4.10-10), libctf-nobfd0 (= 2.34-2), libctf0 (= 2.34-2), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 12.9), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libexpat1 (= 2.2.9-1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-3), libfile-stripnondeterminism-perl (= 1.6.3-2), libgcc-8-dev (= 8.3.0-26), libgcc-9-dev (= 9.2.1-26), libgcc-s1 (= 10-20200202-1), libgcc1 (= 1:10-20200202-1), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libgfortran5 (= 10-20200202-1), libglib2.0-0 (= 2.62.4-2), libgmp10 (= 2:6.2.0+dfsg-3), libgomp1 (= 10-20200202-1), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl22 (= 0.22-2), libitm1 (= 10-20200202-1), liblapack-dev (= 3.9.0-1), liblapack3 (= 3.9.0-1), liblmdb0 (= 0.9.22-1), liblsan0 (= 10-20200202-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmbedcrypto3 (= 2.16.4-1), libmbedtls12 (= 2.16.4-1), libmbedx509-0 (= 2.16.4-1), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpdec2 (= 2.4.2-2), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-26), libncurses6 (= 6.1+20191019-1), libncursesw6 (= 6.1+20191019-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.2-2), libprocps7 (= 2:3.3.15-2+b1), libpython3-stdlib (= 3.7.5-3), libpython3.7-minimal (= 3.7.6-1+b1), libpython3.7-stdlib (= 3.7.6-1+b1), libquadmath0 (= 10-20200202-1), libreadline8 (= 8.0-3), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libsqlite3-0 (= 3.31.1-1), libssl1.1 (= 1.1.1d-2), libstdc++-9-dev (= 9.2.1-26), libstdc++6 (= 10-20200202-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 244.1-2), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-11), libtsan0 (= 10-20200202-1), libubsan1 (= 10-20200202-1), libuchardet0 (= 0.0.6-3), libudev1 (= 244.1-2), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-8), linux-libc-dev (= 5.4.13-1), login (= 1:4.8-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-2), mawk (= 1.3.4.20200120-1), mime-support (= 3.64), ncbi-blast+ (= 2.9.0-3), ncbi-data (= 6.1.20170106+dfsg1-7), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), procps (= 2:3.3.15-2+b1), python3 (= 3.7.5-3), python3-minimal (= 3.7.5-3), python3.7 (= 3.7.6-1+b1), python3.7-minimal (= 3.7.6-1+b1), readline-common (= 8.0-3), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1.2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1580685853" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ proteinortho-dbgsym_6.0.13+dfsg-1_armhf.deb ------------------------------------------- new Debian package, version 2.0. size 949540 bytes: control archive=756 bytes. 525 bytes, 12 lines control 516 bytes, 5 lines md5sums Package: proteinortho-dbgsym Source: proteinortho Version: 6.0.13+dfsg-1 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 997 Depends: proteinortho (= 6.0.13+dfsg-1) Section: debug Priority: optional Description: debug symbols for proteinortho Build-Ids: 260c5ef12f441eb62667c49ac2ef9cb9b4f66f5c 7b404ca14dc97e1d0b38e9b169f10216af516bbb 928f5f0c19b496853ab76cc66b8de47cdd08aa94 c103f2503aeb31990ba459ac858ed219c72395cf drwxr-xr-x root/root 0 2020-02-02 23:24 ./ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/debug/.build-id/26/ -rw-r--r-- root/root 108912 2020-02-02 23:24 ./usr/lib/debug/.build-id/26/0c5ef12f441eb62667c49ac2ef9cb9b4f66f5c.debug drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/debug/.build-id/7b/ -rw-r--r-- root/root 713236 2020-02-02 23:24 ./usr/lib/debug/.build-id/7b/404ca14dc97e1d0b38e9b169f10216af516bbb.debug drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/debug/.build-id/92/ -rw-r--r-- root/root 14024 2020-02-02 23:24 ./usr/lib/debug/.build-id/92/8f5f0c19b496853ab76cc66b8de47cdd08aa94.debug drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/debug/.build-id/c1/ -rw-r--r-- root/root 134656 2020-02-02 23:24 ./usr/lib/debug/.build-id/c1/03f2503aeb31990ba459ac858ed219c72395cf.debug drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 31880 2020-02-02 23:24 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/proteinortho.debug drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/share/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-02-02 23:24 ./usr/share/doc/proteinortho-dbgsym -> proteinortho proteinortho_6.0.13+dfsg-1_armhf.deb ------------------------------------ new Debian package, version 2.0. size 202944 bytes: control archive=1860 bytes. 968 bytes, 17 lines control 2808 bytes, 36 lines md5sums Package: proteinortho Version: 6.0.13+dfsg-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 834 Depends: libc6 (>= 2.7), libgcc-s1 (>= 3.5), libgomp1 (>= 6), liblapack3, libstdc++6 (>= 5.2), perl:any, python3, ncbi-blast+, diamond-aligner, procps Section: science Priority: optional Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Description: Detection of (Co-)orthologs in large-scale protein analysis Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes. drwxr-xr-x root/root 0 2020-02-02 23:24 ./ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/bin/ lrwxrwxrwx root/root 0 2020-02-02 23:24 ./usr/bin/proteinortho -> proteinortho6 -rwxr-xr-x root/root 52 2019-12-12 23:17 ./usr/bin/proteinortho6 drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/lib/proteinortho/ -rwxr-xr-x root/root 148085 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho -rwxr-xr-x root/root 38265 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho2html.pl -rwxr-xr-x root/root 4997 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho2tree.pl -rwxr-xr-x root/root 4697 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho2xml.pl -rwxr-xr-x root/root 148085 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho6.pl -rwxr-xr-x root/root 26264 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_cleanupblastgraph -rwxr-xr-x root/root 100044 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_clustering -rwxr-xr-x root/root 1239 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_compareProteinorthoGraphs.pl -rwxr-xr-x root/root 8787 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_do_mcl.pl -rwxr-xr-x root/root 1166 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_extract_from_graph.pl -rwxr-xr-x root/root 32953 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_ffadj_mcs.py -rwxr-xr-x root/root 479 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_formatUsearch.pl -rwxr-xr-x root/root 10913 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_grab_proteins.pl -rwxr-xr-x root/root 22168 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_graphMinusRemovegraph -rwxr-xr-x root/root 27858 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_history.pl -rwxr-xr-x root/root 1616 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_singletons.pl -rwxr-xr-x root/root 10921 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_summary.pl -rwxr-xr-x root/root 9776 2020-02-02 23:24 ./usr/lib/proteinortho/proteinortho_treeBuilderCore drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/share/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/share/doc/proteinortho/ -rw-r--r-- root/root 263 2019-12-12 23:17 ./usr/share/doc/proteinortho/README.test -rw-r--r-- root/root 1160 2020-02-02 23:24 ./usr/share/doc/proteinortho/changelog.Debian.gz -rw-r--r-- root/root 6176 2020-01-29 07:42 ./usr/share/doc/proteinortho/changelog.gz -rw-r--r-- root/root 1081 2020-02-02 23:24 ./usr/share/doc/proteinortho/copyright drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/share/doc/proteinortho/examples/ -rw-r--r-- root/root 52855 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/C.faa -rw-r--r-- root/root 18467 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/C.gff -rw-r--r-- root/root 751 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/C2.faa -rw-r--r-- root/root 120 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/C2.gff -rw-r--r-- root/root 55942 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/E.faa -rw-r--r-- root/root 18666 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/E.gff -rw-r--r-- root/root 27375 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/L.faa -rw-r--r-- root/root 2376 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/L.gff -rw-r--r-- root/root 27690 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/M.faa -rw-r--r-- root/root 2317 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/M.gff -rwxr-xr-x root/root 262 2020-01-29 07:42 ./usr/share/doc/proteinortho/examples/chk_test.pl -rw-r--r-- root/root 2281 2020-02-02 23:23 ./usr/share/doc/proteinortho/run-unit-test drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/share/man/ drwxr-xr-x root/root 0 2020-02-02 23:24 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2020-02-02 23:24 ./usr/share/man/man1/proteinortho.1.gz -> proteinortho6.1.gz -rw-r--r-- root/root 1562 2020-02-02 23:24 ./usr/share/man/man1/proteinortho6.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [584 B] Get:5 copy:/<>/apt_archive ./ Packages [653 B] Fetched 2200 B in 0s (120 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl librole-tiny-perl libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. 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Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b3) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up liburi-perl (1.76-1) ... Setting up gpg (2.2.19-1) ... Setting up libnet-ssleay-perl (1.88-2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libtype-tiny-perl (1.008001-2) ... Setting up libnet-dns-perl (1.21-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-3+b4) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libcgi-pm-perl (4.45-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 8452 Build-Time: 31 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 26 Job: proteinortho_6.0.13+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: proteinortho Package-Time: 73 Source-Version: 6.0.13+dfsg-1 Space: 8452 Status: successful Version: 6.0.13+dfsg-1 -------------------------------------------------------------------------------- Finished at 2020-02-03T21:46:53Z Build needed 00:01:13, 8452k disk space