sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | proteinortho 6.0.23+dfsg-1 (ppc64el) Mon, 19 Oct 2020 15:10:39 +0000 | +==============================================================================+ Package: proteinortho Version: 6.0.23+dfsg-1 Source Version: 6.0.23+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-8d8c2071-e40a-4b46-8bff-69873ea4e53c' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-dmYqQD/resolver-eWQXUC' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-19-0806.45.pdiff [10.0 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-19-1414.01.pdiff [17.0 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-19-1414.01.pdiff [17.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-19-0806.45.pdiff [7301 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-19-1414.01.pdiff [17.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-19-1414.01.pdiff [17.4 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [8250 kB] Fetched 8503 kB in 9s (989 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proteinortho.git Please use: git clone https://salsa.debian.org/med-team/proteinortho.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 520 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main proteinortho 6.0.23+dfsg-1 (dsc) [2119 B] Get:2 http://debian.oregonstate.edu/debian unstable/main proteinortho 6.0.23+dfsg-1 (tar) [510 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main proteinortho 6.0.23+dfsg-1 (diff) [7972 B] Fetched 520 kB in 0s (34.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/proteinortho-dmYqQD/proteinortho-6.0.23+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-dmYqQD' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner, procps, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev, diamond-aligner, procps, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [455 B] Get:5 copy:/<>/apt_archive ./ Packages [525 B] Fetched 1937 B in 0s (84.3 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils build-essential cpp-10-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:ppc64el dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-10-powerpc64le-linux-gnu gcc-10-powerpc64le-linux-gnu-base gcc-9-base:ppc64el gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblas-dev:ppc64el libblas3:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-ppc64el-cross libgcc-9-dev:ppc64el libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libglib2.0-0 libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libicu67 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblapack-dev:ppc64el liblapack3:ppc64el liblmdb0 liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libncurses6 libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el libperl5.30 libpipeline1 libprocps8 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8 libsigsegv2 libsqlite3-0 libssl1.1:ppc64el libstdc++-10-dev libstdc++-10-dev-ppc64el-cross libstdc++-9-dev:ppc64el libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db mime-support ncbi-blast+ ncbi-data perl perl-modules-5.30 po-debconf procps python3 python3-minimal python3.8 python3.8-minimal readline-common sensible-utils ucf zlib1g:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:ppc64el glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el glibc-doc manpages-dev:ppc64el gnupg git bzr krb5-doc:ppc64el krb5-user:ppc64el libstdc++-10-doc libstdc++-9-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support readline-doc Recommended packages: med-config:ppc64el gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:ppc64el libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:ppc64el libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils build-essential cpp-10-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:ppc64el dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-10-powerpc64le-linux-gnu gcc-10-powerpc64le-linux-gnu-base gcc-9-base:ppc64el gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblas-dev:ppc64el libblas3:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-ppc64el-cross libgcc-9-dev:ppc64el libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libglib2.0-0 libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libicu67 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblapack-dev:ppc64el liblapack3:ppc64el liblmdb0 liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libncurses6 libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el libperl5.30 libpipeline1 libprocps8 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8 libsigsegv2 libsqlite3-0 libssl1.1:ppc64el libstdc++-10-dev libstdc++-10-dev-ppc64el-cross libstdc++-9-dev:ppc64el libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db mime-support ncbi-blast+ ncbi-data perl perl-modules-5.30 po-debconf procps python3 python3-minimal python3.8 python3.8-minimal readline-common sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf zlib1g:ppc64el 0 upgraded, 148 newly installed, 0 to remove and 0 not upgraded. Need to get 130 MB of archives. After this operation, 582 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-minimal amd64 3.8.6-1 [761 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8-minimal amd64 3.8.6-1 [1863 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.8.6-1 [37.7 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 mime-support all 3.64 [37.8 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-stdlib amd64 3.8.6-1 [1720 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8 amd64 3.8.6-1 [422 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.8.6-1 [20.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.8.6-1 [64.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-10-base ppc64el 10.2.0-15 [199 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-9-base ppc64el 9.3.0-18 [197 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2+20200918-1 [102 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.16-5 [62.7 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.16-5 [262 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.35.1-2 [2297 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-4 [2344 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-15 [1738 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-15 [8669 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-powerpc64le-linux-gnu-base amd64 10.2.0-9cross1 [199 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-powerpc64le-linux-gnu amd64 10.2.0-9cross1 [7312 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:10.2.0-1 [16.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-9cross1 [195 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.31-1cross2 [1563 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 10.2.0-9cross1 [30.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 10.2.0-9cross1 [106 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 10.2.0-9cross1 [28.4 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 10.2.0-9cross1 [9732 B] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-ppc64el-cross all 10.2.0-9cross1 [341 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 10.2.0-9cross1 [154 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 10.2.0-9cross1 [316 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 10.2.0-9cross1 [498 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 10.2.0-9cross1 [146 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 10.2.0-9cross1 [149 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-ppc64el-cross all 10.2.0-9cross1 [1246 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-powerpc64le-linux-gnu amd64 10.2.0-9cross1 [14.6 MB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:10.2.0-1 [1468 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.7.6-1cross2 [1222 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.31-1cross2 [2437 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-ppc64el-cross all 10.2.0-9cross1 [1768 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-powerpc64le-linux-gnu amd64 10.2.0-9cross1 [7977 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:10.2.0-1 [1184 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.1 [692 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.8 [6652 B] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.1-2 [1362 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-s1 ppc64el 10.2.0-15 [30.3 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.4.17-1 [96.3 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main ppc64el libcom-err2 ppc64el 1.45.6-1 [72.3 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5support0 ppc64el 1.17-10 [67.7 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main ppc64el libk5crypto3 ppc64el 1.17-10 [126 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main ppc64el libkeyutils1 ppc64el 1.6.1-2 [16.7 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main ppc64el libssl1.1 ppc64el 1.1.1h-1 [1536 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5-3 ppc64el 1.17-10 [395 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main ppc64el libgssapi-krb5-2 ppc64el 1.17-10 [170 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc3 ppc64el 1.2.6-3 [95.6 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl2 ppc64el 1.3.0-2 [44.8 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main ppc64el libnss-nis ppc64el 3.1-4 [28.4 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main ppc64el libnss-nisplus ppc64el 1.3-4 [23.7 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.31-4 [2830 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 10.2.0-15 [539 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2 [94.7 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main ppc64el diamond-aligner ppc64el 2.0.4-2 [956 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan5 ppc64el 9.3.0-18 [408 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 10.2.0-15 [9912 B] Get:125 http://debian.oregonstate.edu/debian unstable/main ppc64el libblas3 ppc64el 3.9.0-3 [118 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main ppc64el libblas-dev ppc64el 3.9.0-3 [124 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.9.1-1 [1191 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt-dev ppc64el 1:4.4.17-1 [119 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc-dev ppc64el 1.2.6-3 [209 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl-dev ppc64el 1.3.0-2 [73.6 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.31-4 [2384 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 10.2.0-15 [108 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 10.2.0-15 [28.8 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 10.2.0-15 [155 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 10.2.0-15 [323 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 10.2.0-15 [147 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 10.2.0-15 [149 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-9-dev ppc64el 9.3.0-18 [1259 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main ppc64el libgfortran5 ppc64el 10.2.0-15 [428 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main ppc64el liblapack3 ppc64el 3.9.0-3 [1673 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main ppc64el liblapack-dev ppc64el 3.9.0-3 [3377 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedcrypto3 amd64 2.16.5-1 [214 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedx509-0 amd64 2.16.5-1 [105 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedtls12 amd64 2.16.5-1 [134 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-9-dev ppc64el 9.3.0-18 [1753 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 ncbi-blast+ amd64 2.10.1-3 [11.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 130 MB in 2s (56.3 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10484 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3+b1_amd64.deb ... Unpacking bsdextrautils (2.36-3+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../05-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... 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Setting up libpython3.8-minimal:amd64 (3.8.6-1) ... Setting up libexpat1:amd64 (2.2.10-1) ... Setting up python3.8-minimal (3.8.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13277 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.6-1_amd64.deb ... Unpacking python3-minimal (3.8.6-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.64_all.deb ... Unpacking mime-support (3.64) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../4-libsqlite3-0_3.33.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.33.0-1) ... 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Unpacking libtirpc-dev:amd64 (1.2.6-3) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../021-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../022-libc6-dev_2.31-4_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-4) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../023-libstdc++-10-dev_10.2.0-15_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.0-15) ... Selecting previously unselected package g++-10. Preparing to unpack .../024-g++-10_10.2.0-15_amd64.deb ... Unpacking g++-10 (10.2.0-15) ... Selecting previously unselected package g++. Preparing to unpack .../025-g++_4%3a10.2.0-1_amd64.deb ... Unpacking g++ (4:10.2.0-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../026-libdpkg-perl_1.20.5_all.deb ... Unpacking libdpkg-perl (1.20.5) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../027-dpkg-dev_1.20.5_all.deb ... Unpacking dpkg-dev (1.20.5) ... Selecting previously unselected package build-essential. Preparing to unpack .../028-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-10-powerpc64le-linux-gnu-base:amd64. Preparing to unpack .../029-gcc-10-powerpc64le-linux-gnu-base_10.2.0-9cross1_amd64.deb ... Unpacking gcc-10-powerpc64le-linux-gnu-base:amd64 (10.2.0-9cross1) ... Selecting previously unselected package cpp-10-powerpc64le-linux-gnu. Preparing to unpack .../030-cpp-10-powerpc64le-linux-gnu_10.2.0-9cross1_amd64.deb ... Unpacking cpp-10-powerpc64le-linux-gnu (10.2.0-9cross1) ... Selecting previously unselected package cpp-powerpc64le-linux-gnu. Preparing to unpack .../031-cpp-powerpc64le-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking cpp-powerpc64le-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../032-cross-config_2.6.15-3.1_all.deb ... Unpacking cross-config (2.6.15-3.1) ... Selecting previously unselected package gcc-10-cross-base. Preparing to unpack .../033-gcc-10-cross-base_10.2.0-9cross1_all.deb ... Unpacking gcc-10-cross-base (10.2.0-9cross1) ... Selecting previously unselected package libc6-ppc64el-cross. Preparing to unpack .../034-libc6-ppc64el-cross_2.31-1cross2_all.deb ... Unpacking libc6-ppc64el-cross (2.31-1cross2) ... Selecting previously unselected package libgcc-s1-ppc64el-cross. Preparing to unpack .../035-libgcc-s1-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libgcc-s1-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package libgomp1-ppc64el-cross. Preparing to unpack .../036-libgomp1-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libgomp1-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package libitm1-ppc64el-cross. Preparing to unpack .../037-libitm1-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libitm1-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package libatomic1-ppc64el-cross. Preparing to unpack .../038-libatomic1-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libatomic1-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package libasan6-ppc64el-cross. Preparing to unpack .../039-libasan6-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libasan6-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package liblsan0-ppc64el-cross. Preparing to unpack .../040-liblsan0-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking liblsan0-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package libtsan0-ppc64el-cross. Preparing to unpack .../041-libtsan0-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libtsan0-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package libstdc++6-ppc64el-cross. Preparing to unpack .../042-libstdc++6-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libstdc++6-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package libubsan1-ppc64el-cross. Preparing to unpack .../043-libubsan1-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libubsan1-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package libquadmath0-ppc64el-cross. Preparing to unpack .../044-libquadmath0-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libquadmath0-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package libgcc-10-dev-ppc64el-cross. Preparing to unpack .../045-libgcc-10-dev-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libgcc-10-dev-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package gcc-10-powerpc64le-linux-gnu. Preparing to unpack .../046-gcc-10-powerpc64le-linux-gnu_10.2.0-9cross1_amd64.deb ... Unpacking gcc-10-powerpc64le-linux-gnu (10.2.0-9cross1) ... Selecting previously unselected package gcc-powerpc64le-linux-gnu. Preparing to unpack .../047-gcc-powerpc64le-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking gcc-powerpc64le-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package linux-libc-dev-ppc64el-cross. Preparing to unpack .../048-linux-libc-dev-ppc64el-cross_5.7.6-1cross2_all.deb ... Unpacking linux-libc-dev-ppc64el-cross (5.7.6-1cross2) ... Selecting previously unselected package libc6-dev-ppc64el-cross. Preparing to unpack .../049-libc6-dev-ppc64el-cross_2.31-1cross2_all.deb ... Unpacking libc6-dev-ppc64el-cross (2.31-1cross2) ... Selecting previously unselected package libstdc++-10-dev-ppc64el-cross. Preparing to unpack .../050-libstdc++-10-dev-ppc64el-cross_10.2.0-9cross1_all.deb ... Unpacking libstdc++-10-dev-ppc64el-cross (10.2.0-9cross1) ... Selecting previously unselected package g++-10-powerpc64le-linux-gnu. Preparing to unpack .../051-g++-10-powerpc64le-linux-gnu_10.2.0-9cross1_amd64.deb ... Unpacking g++-10-powerpc64le-linux-gnu (10.2.0-9cross1) ... Selecting previously unselected package g++-powerpc64le-linux-gnu. Preparing to unpack .../052-g++-powerpc64le-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking g++-powerpc64le-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../053-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../054-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../055-libicu67_67.1-4_amd64.deb ... Unpacking libicu67:amd64 (67.1-4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../056-libxml2_2.9.10+dfsg-6.1_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.1) ... 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Setting up libc6-ppc64el-cross (2.31-1cross2) ... Setting up libsqlite3-0:amd64 (3.33.0-1) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:ppc64el (5.9.1-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-10-base:ppc64el (10.2.0-15) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libtirpc-dev:amd64 (1.2.6-3) ... Setting up libncurses6:amd64 (6.2+20200918-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-10-cross-base (10.2.0-9cross1) ... Setting up libitm1-ppc64el-cross (10.2.0-9cross1) ... Setting up libatomic1-ppc64el-cross (10.2.0-9cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up linux-libc-dev-ppc64el-cross (5.7.6-1cross2) ... Setting up libmbedcrypto3:amd64 (2.16.5-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-4) ... Setting up libgcc-s1-ppc64el-cross (10.2.0-9cross1) ... Setting up cpp-10-powerpc64le-linux-gnu (10.2.0-9cross1) ... Setting up binutils-powerpc64le-linux-gnu (2.35.1-2) ... Setting up libelf1:amd64 (0.181-1) ... Setting up readline-common (8.0-4) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libprocps8:amd64 (2:3.3.16-5) ... Setting up cpp-powerpc64le-linux-gnu (4:10.2.0-1) ... Setting up gcc-9-base:ppc64el (9.3.0-18) ... Setting up libstdc++-10-dev:amd64 (10.2.0-15) ... Setting up libasan6-ppc64el-cross (10.2.0-9cross1) ... Setting up g++-10 (10.2.0-15) ... Setting up libc6-dev-ppc64el-cross (2.31-1cross2) ... Setting up libtool (2.4.6-14) ... Setting up libquadmath0-ppc64el-cross (10.2.0-9cross1) ... Setting up libmbedx509-0:amd64 (2.16.5-1) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libmbedtls12:amd64 (2.16.5-1) ... Setting up m4 (1.4.18-4) ... Setting up libgomp1-ppc64el-cross (10.2.0-9cross1) ... Setting up liblsan0-ppc64el-cross (10.2.0-9cross1) ... Setting up perl (5.30.3-4) ... Setting up libtsan0-ppc64el-cross (10.2.0-9cross1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up libstdc++6-ppc64el-cross (10.2.0-9cross1) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up procps (2:3.3.16-5) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libsub-override-perl (0.09-2) ... Setting up libpython3.8-stdlib:amd64 (3.8.6-1) ... Setting up python3.8 (3.8.6-1) ... Setting up libpython3-stdlib:amd64 (3.8.6-1) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libubsan1-ppc64el-cross (10.2.0-9cross1) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up python3 (3.8.6-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ncbi-blast+ (2.10.1-3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libgcc-10-dev-ppc64el-cross (10.2.0-9cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-10-dev-ppc64el-cross (10.2.0-9cross1) ... Setting up gcc-10-powerpc64le-linux-gnu (10.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up g++-10-powerpc64le-linux-gnu (10.2.0-9cross1) ... Setting up gcc-powerpc64le-linux-gnu (4:10.2.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-powerpc64le-linux-gnu (4:10.2.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-ppc64el (12.8) ... Setting up libcrypt1:ppc64el (1:4.4.17-1) ... Setting up libgcc-s1:ppc64el (10.2.0-15) ... Setting up libcrypt-dev:ppc64el (1:4.4.17-1) ... Setting up libnsl2:ppc64el (1.3.0-2) ... Setting up libtirpc3:ppc64el (1.2.6-3) ... Setting up libnss-nisplus:ppc64el (1.3-4) ... Setting up dh-autoreconf (19) ... Setting up libtirpc-dev:ppc64el (1.2.6-3) ... Setting up libnss-nis:ppc64el (3.1-4) ... Setting up libc6:ppc64el (2.31-4) ... Setting up libnsl-dev:ppc64el (1.3.0-2) ... Setting up libc6-dev:ppc64el (2.31-4) ... Setting up libstdc++6:ppc64el (10.2.0-15) ... Setting up liblsan0:ppc64el (10.2.0-15) ... Setting up libitm1:ppc64el (10.2.0-15) ... Setting up libtsan0:ppc64el (10.2.0-15) ... Setting up libkeyutils1:ppc64el (1.6.1-2) ... Setting up libssl1.1:ppc64el (1.1.1h-1) ... Setting up debhelper (13.2.1) ... Setting up zlib1g:ppc64el (1:1.2.11.dfsg-2) ... Setting up libcom-err2:ppc64el (1.45.6-1) ... Setting up libgomp1:ppc64el (10.2.0-15) ... Setting up diamond-aligner:ppc64el (2.0.4-2) ... Setting up libkrb5support0:ppc64el (1.17-10) ... Setting up libasan5:ppc64el (9.3.0-18) ... Setting up libblas3:ppc64el (3.9.0-3) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libquadmath0:ppc64el (10.2.0-15) ... Setting up libatomic1:ppc64el (10.2.0-15) ... Setting up libk5crypto3:ppc64el (1.17-10) ... Setting up libgfortran5:ppc64el (10.2.0-15) ... Setting up libubsan1:ppc64el (10.2.0-15) ... Setting up libkrb5-3:ppc64el (1.17-10) ... Setting up libblas-dev:ppc64el (3.9.0-3) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up liblapack3:ppc64el (3.9.0-3) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libgcc-9-dev:ppc64el (9.3.0-18) ... Setting up liblapack-dev:ppc64el (3.9.0-3) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up libgssapi-krb5-2:ppc64el (1.17-10) ... Setting up libstdc++-9-dev:ppc64el (9.3.0-18) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-11-amd64 #1 SMP Debian 4.19.146-1 (2020-09-17) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-2 dpkg-dev_1.20.5 g++-10_10.2.0-15 gcc-10_10.2.0-15 libc6-dev_2.31-4 libstdc++-10-dev_10.2.0-15 libstdc++-10-dev-ppc64el-cross_10.2.0-9cross1 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-15 libstdc++6-ppc64el-cross_10.2.0-9cross1 linux-libc-dev_5.9.1-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 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Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: proteinortho Binary: proteinortho Architecture: any Version: 6.0.23+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/proteinortho Vcs-Git: https://salsa.debian.org/med-team/proteinortho.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner, procps Package-List: proteinortho deb science optional arch=any Checksums-Sha1: 94711cefe2111581d7da3d0b3492e02b0b0c5792 509844 proteinortho_6.0.23+dfsg.orig.tar.xz a6576027a753fa24fc59d031740a51bdaaf39a31 7972 proteinortho_6.0.23+dfsg-1.debian.tar.xz Checksums-Sha256: ed76641086bd444f8cc9d4d7acdab697a1ac2ec965643e43e401d638cba1218c 509844 proteinortho_6.0.23+dfsg.orig.tar.xz 5f0c97f2e07a9616735410d1b2da500666b697712dcdd594ce9419891f03dda1 7972 proteinortho_6.0.23+dfsg-1.debian.tar.xz Files: 66939c0f9703318e581080175431e994 509844 proteinortho_6.0.23+dfsg.orig.tar.xz bd1ff01063cb04d6981b60ba3521b677 7972 proteinortho_6.0.23+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl9/KBQACgkQPCZ2P2xn 5uLgLg//bD1NIvPEnwLxym7YYZeEq1iWEC4Z5FTxJGCuyvM+V5+BivPJIAbQN9fL Z83PAa1Q+aEcNfpUl8XVRrCn40BFk0U81yMqbe7y7tcwJYL26zn9rW4DptvvtEZj Pd4Huj66v19eWaz54drMrm2H2zGJKIn6iEzGucCVbOs5MC+9KHbFwP7mMUADcqcH tzKR7Kw2RkShA3u7AwIewwllwW579qDqh+/3aFc9GxIx2tLYh2DQ26+ReBRF0che YH/tGLrkJUAzqFlBjcMgE9235IJdxUlwp+Z5bcCTES8Tr+QuPbLS6mw4AUsNrHF9 w9G+h9phYJR4w6coP4z+P8d6SVSXfhUzzMLLiz6hnEmV44GgVfmYzPnlwoCBlqT4 MxZGqwIlzPbv2oIhNtxBcFXYStAYrlb8aPIeR7oB27fs5X3n8cN6ZwiVCsXzO2QD WVIMDI6nLfisPhgvwiWXgJFn2/ctY6DpmF0ImsCR7dKMx5rSFUYkMHj7y2q2O3Pl TF8eq+pIk++wz6Vf5XkKGTczrsFDLT4VuO/1z6xDL0AsfdScWA01oLzp7p/4zT7s GFJm9b8B6GoJeHDhWAw8dxABjVZ/l8biJdHIgonC5pA55OSNXIW1lbcxHnqWOUbp 6Pu1W4951vmTqroTC47Bt3b3tWiKJM370QlFrg90xJX+8gmS0Gw= =A4sw -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.m50M99I8/trustedkeys.kbx': General error gpgv: Signature made Thu Oct 8 14:54:12 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proteinortho_6.0.23+dfsg-1.dsc dpkg-source: info: extracting proteinortho in /<> dpkg-source: info: unpacking proteinortho_6.0.23+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_6.0.23+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening dpkg-source: info: applying deb_diamond dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-8d8c2071-e40a-4b46-8bff-69873ea4e53c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.0.23+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -rf src/BUILD test/C.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=powerpc64le-linux-gnu-pkg-config CXX=powerpc64le-linux-gnu-g\+\+ CC=powerpc64le-linux-gnu-gcc make[1]: Entering directory '/<>' Creating build directory ... the compiler options -mtune and -march are disabled. If you want to add these use MTUNEARCH=TRUE. [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -march=native -mtune=native -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive && ([ $? -eq 0 ] && src/BUILD/Linux_x86_64/proteinortho_clustering -test && [ $? -eq 0 ] && echo "......OK dynamic linking was successful for proteinortho_clustering!";) || ( \ echo "......-march=native -mtune=native failed, I try without them again."; \ powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive && ([ $? -eq 0 ] && src/BUILD/Linux_x86_64/proteinortho_clustering -test && [ $? -eq 0 ] && echo "......OK dynamic linking was successful for proteinortho_clustering!";) || ( \ echo "......dynamic linking failed too, now I try dynamic linking without -WL,-whole-archive (this should now work for OSX)."; \ powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -lpthread && ([ $? -eq 0 ] && src/BUILD/Linux_x86_64/proteinortho_clustering -test && [ $? -eq 0 ] && echo "......OK dynamic linking was successful for proteinortho_clustering!";) || ( \ echo "......dynamic linking failed (without -WL,-whole-archive) too too, now I try to openblas."; \ powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -lopenblas -pthread -lpthread && ([ $? -eq 0 ] && src/BUILD/Linux_x86_64/proteinortho_clustering -test && [ $? -eq 0 ] && echo "......OK dynamic linking was successful for proteinortho_clustering!";) || ( \ echo "......last linking failed too too too, now I try to recompile lapack (v.3.8.0) and then compile proteinortho_clustering with dynamic linking."; \ echo "......[ 33%] Extracting the LAPACK library"; \ if [ ! -d src/lapack-3.8.0 ]; then cd src; tar -xzvf lapack-3.8.0.tar.gz > /dev/null 2>&1; cd ..; fi; \ echo "......[ 66%] Compiling the LAPACK library (using cmake + make)"; \ if [ ! -f src/lapack-3.8.0/build/lib/liblapack.a ]; then mkdir src/lapack-3.8.0/build 2> /dev/null; cd src/lapack-3.8.0/build; cmake .. -DCMAKE_CXX_COMPILER=powerpc64le-linux-gnu-g++ > /dev/null; make all -j4 > /dev/null 2>&1; cd ../../.. ; fi; \ echo "......[ 99%] Building **proteinortho_clustering** with LAPACK (dynamic linking)"; \ powerpc64le-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Isrc/lapack-3.8.0/build/include/ -Lsrc/lapack-3.8.0/build/lib/ -llapack -lblas -Wl,-z,relro -Wl,-z,now -lgfortran && echo "......OK dynamic linking was successful for proteinortho_clustering!" || ( echo "" ) ; ) ) ) ) powerpc64le-linux-gnu-g++: error: unrecognized command-line option ‘-march=native’; did you mean ‘-mcpu=native’? ......-march=native -mtune=native failed, I try without them again. /bin/sh: 3: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed too, now I try dynamic linking without -WL,-whole-archive (this should now work for OSX). /bin/sh: 5: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed (without -WL,-whole-archive) too too, now I try to openblas. /usr/lib/gcc-cross/powerpc64le-linux-gnu/10/../../../../powerpc64le-linux-gnu/bin/ld: cannot find -lopenblas collect2: error: ld returned 1 exit status ......last linking failed too too too, now I try to recompile lapack (v.3.8.0) and then compile proteinortho_clustering with dynamic linking. ......[ 33%] Extracting the LAPACK library ......[ 66%] Compiling the LAPACK library (using cmake + make) /bin/sh: 12: cd: can't cd to src/lapack-3.8.0/build /bin/sh: 12: cmake: not found E: Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 2020-10-19T17:41:54Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3632 Build-Time: 9029 Distribution: unstable Fail-Stage: build Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 28 Job: proteinortho_6.0.23+dfsg-1 Machine Architecture: amd64 Package: proteinortho Package-Time: 9075 Source-Version: 6.0.23+dfsg-1 Space: 3632 Status: attempted Version: 6.0.23+dfsg-1 -------------------------------------------------------------------------------- Finished at 2020-10-19T17:41:54Z Build needed 02:31:15, 3632k disk space