sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | proteinortho 6.0.31+dfsg-1 (arm64) Sun, 22 Aug 2021 13:30:21 +0000 | +==============================================================================+ Package: proteinortho Version: 6.0.31+dfsg-1 Source Version: 6.0.31+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-b338e5f9-714c-4119-a8ff-393169cba612' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-e3se5p/resolver-5IlNE2' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-08-22-0801.07-F-2021-08-22-0801.07.pdiff [13.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-08-22-0801.07-F-2021-08-22-0801.07.pdiff [10.7 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-08-22-0801.07-F-2021-08-22-0801.07.pdiff [13.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-08-22-0801.07-F-2021-08-22-0801.07.pdiff [10.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8590 kB] Fetched 8906 kB in 3s (3035 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proteinortho.git Please use: git clone https://salsa.debian.org/med-team/proteinortho.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 524 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main proteinortho 6.0.31+dfsg-1 (dsc) [2182 B] Get:2 http://debian.oregonstate.edu/debian unstable/main proteinortho 6.0.31+dfsg-1 (tar) [515 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main proteinortho 6.0.31+dfsg-1 (diff) [6428 B] Fetched 524 kB in 10s (53.5 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/proteinortho-e3se5p/proteinortho-6.0.31+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-e3se5p' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner, procps, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev, diamond-aligner, procps, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [453 B] Get:5 copy:/<>/apt_archive ./ Packages [525 B] Fetched 1935 B in 0s (76.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:arm64 dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu gcc-10-aarch64-linux-gnu-base gcc-10-cross-base gcc-11-base:arm64 gcc-11-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblas-dev:arm64 libblas3:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libicu67 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblapack-dev:arm64 liblapack3:arm64 liblmdb0 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libncurses6 libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libperl5.32 libpipeline1 libprocps8 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsqlite3-0 libssl1.1:arm64 libstdc++-10-dev libstdc++-10-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types ncbi-blast+ ncbi-data perl perl-modules-5.32 po-debconf procps python3 python3-minimal python3.9 python3.9-minimal rpcsvc-proto sensible-utils ucf zlib1g:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 glibc-doc manpages-dev:arm64 gnupg git bzr krb5-doc:arm64 krb5-user:arm64 libstdc++-10-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binfmt-support Recommended packages: med-config:arm64 gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:arm64 libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:arm64 libgpm2 ca-certificates libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:arm64 dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu gcc-10-aarch64-linux-gnu-base gcc-10-cross-base gcc-11-base:arm64 gcc-11-cross-base gcc-9-base:arm64 gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan6-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libblas-dev:arm64 libblas3:arm64 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-arm64-cross libgcc-9-dev:arm64 libgcc-s1:arm64 libgcc-s1-arm64-cross libgfortran5:arm64 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libicu67 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblapack-dev:arm64 liblapack3:arm64 liblmdb0 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libncurses6 libnsl-dev libnsl-dev:arm64 libnsl2:arm64 libperl5.32 libpipeline1 libprocps8 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsqlite3-0 libssl1.1:arm64 libstdc++-10-dev libstdc++-10-dev-arm64-cross libstdc++-9-dev:arm64 libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db media-types ncbi-blast+ ncbi-data perl perl-modules-5.32 po-debconf procps python3 python3-minimal python3.9 python3.9-minimal rpcsvc-proto sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded. Need to get 257 MB of archives. After this operation, 1160 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-1 [142 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-5 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-5 [4125 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 4.0.0 [30.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-11-base arm64 11.2.0-2 [204 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.4.0-2 [200 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-1 [819 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.37-4 [2903 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-1 [104 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-16 [2254 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu-base amd64 10.2.1-6cross1 [202 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-aarch64-linux-gnu amd64 10.2.1-6cross1 [46.6 MB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:10.2.1-1 [16.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu1 [31.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-6cross1 [197 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-2cross1 [200 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.31-9cross4 [1233 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 11.2.0-2cross1 [34.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 11.2.0-2cross1 [93.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 11.2.0-2cross1 [23.3 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 11.2.0-2cross1 [9244 B] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-arm64-cross all 11.2.0-2cross1 [2071 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 11.2.0-2cross1 [851 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 11.2.0-2cross1 [2039 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 11.2.0-2cross1 [482 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 11.2.0-2cross1 [817 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-arm64-cross all 10.2.1-6cross1 [880 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu amd64 10.2.1-6cross1 [53.2 MB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:10.2.1-1 [1460 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.10.13-1cross4 [1375 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.31-9cross4 [2030 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-arm64-cross all 10.2.1-6cross1 [1682 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-aarch64-linux-gnu amd64 10.2.1-6cross1 [49.7 MB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:10.2.1-1 [1176 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu1 [30.5 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu1 [41.6 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.4.1 [191 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.4.1 [1039 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 11.2.0-2 [34.4 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.31-16 [2462 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 11.2.0-2 [522 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-2 [87.9 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main arm64 diamond-aligner arm64 2.0.7-1 [1114 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.4.0-2 [2675 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 11.2.0-2 [9468 B] Get:111 http://debian.oregonstate.edu/debian unstable/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main arm64 libblas-dev arm64 3.9.0-3 [107 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.10.46-4 [1342 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.25-1 [91.0 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.25-1 [109 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.46.4-1 [75.0 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.18.3-6 [64.8 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.18.3-6 [114 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6.1-2 [15.4 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1k-1 [1386 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.18.3-6 [346 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.18.3-6 [155 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc3 arm64 1.3.2-2 [80.4 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main arm64 libtirpc-dev arm64 1.3.2-2 [193 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.31-16 [1945 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 11.2.0-2 [96.0 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 11.2.0-2 [23.7 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 11.2.0-2 [852 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 11.2.0-2 [2045 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 11.2.0-2 [818 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.4.0-2 [881 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main arm64 libgfortran5 arm64 11.2.0-2 [334 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main arm64 liblapack-dev arm64 3.9.0-3 [2758 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.4.0-2 [1670 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 257 MB in 2s (132 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10519 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-1_amd64.deb ... Unpacking bsdextrautils (2.37.2-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../05-perl-modules-5.32_5.32.1-5_all.deb ... Unpacking perl-modules-5.32 (5.32.1-5) ... 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Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... /usr/bin/which: this version of 'which' is deprecated and should not be used. Selecting previously unselected package python3-minimal. (Reading database ... 13355 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../3-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. 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Unpacking gcc-9-base:arm64 (9.4.0-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../003-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../004-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../005-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../008-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../012-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. 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Preparing to unpack .../048-gcc-aarch64-linux-gnu_4%3a10.2.1-1_amd64.deb ... Unpacking gcc-aarch64-linux-gnu (4:10.2.1-1) ... Selecting previously unselected package linux-libc-dev-arm64-cross. Preparing to unpack .../049-linux-libc-dev-arm64-cross_5.10.13-1cross4_all.deb ... Unpacking linux-libc-dev-arm64-cross (5.10.13-1cross4) ... Selecting previously unselected package libc6-dev-arm64-cross. Preparing to unpack .../050-libc6-dev-arm64-cross_2.31-9cross4_all.deb ... Unpacking libc6-dev-arm64-cross (2.31-9cross4) ... Selecting previously unselected package libstdc++-10-dev-arm64-cross. Preparing to unpack .../051-libstdc++-10-dev-arm64-cross_10.2.1-6cross1_all.deb ... Unpacking libstdc++-10-dev-arm64-cross (10.2.1-6cross1) ... Selecting previously unselected package g++-10-aarch64-linux-gnu. Preparing to unpack .../052-g++-10-aarch64-linux-gnu_10.2.1-6cross1_amd64.deb ... Unpacking g++-10-aarch64-linux-gnu (10.2.1-6cross1) ... Selecting previously unselected package g++-aarch64-linux-gnu. Preparing to unpack .../053-g++-aarch64-linux-gnu_4%3a10.2.1-1_amd64.deb ... Unpacking g++-aarch64-linux-gnu (4:10.2.1-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../054-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../055-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../056-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../057-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libxml-namespacesupport-perl. 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Selecting previously unselected package sbuild-build-depends-main-dummy:arm64. Preparing to unpack .../123-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up gcc-11-base:arm64 (11.2.0-2) ... Setting up bsdextrautils (2.37.2-1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up perl-modules-5.32 (5.32.1-5) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:arm64 (5.10.46-4) ... Setting up gettext-base (0.21-4) ... Setting up binutils-aarch64-linux-gnu (2.37-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu1) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libc6-arm64-cross (2.31-9cross4) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-5) ... Setting up gcc-10-cross-base (10.2.1-6cross1) ... Setting up linux-libc-dev-arm64-cross (5.10.13-1cross4) ... Setting up gcc-11-cross-base (11.2.0-2cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.25-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up libc6-dev:amd64 (2.31-16) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up gcc-9-base:arm64 (9.4.0-2) ... Setting up libgcc-s1-arm64-cross (11.2.0-2cross1) ... Setting up gcc-10-aarch64-linux-gnu-base:amd64 (10.2.1-6cross1) ... Setting up libatomic1-arm64-cross (11.2.0-2cross1) ... Setting up liblsan0-arm64-cross (11.2.0-2cross1) ... Setting up libgomp1-arm64-cross (11.2.0-2cross1) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up g++-10 (10.2.1-6) ... Setting up libtool (2.4.6-15) ... Setting up libasan6-arm64-cross (11.2.0-2cross1) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libtsan0-arm64-cross (11.2.0-2cross1) ... Setting up m4 (1.4.18-5) ... Setting up libc6-dev-arm64-cross (2.31-9cross4) ... Setting up libstdc++6-arm64-cross (11.2.0-2cross1) ... Setting up perl (5.32.1-5) ... Setting up libitm1-arm64-cross (11.2.0-2cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.69-14) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up cpp-10-aarch64-linux-gnu (10.2.1-6cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up python3.9 (3.9.2-1) ... Setting up automake (1:1.16.4-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up libubsan1-arm64-cross (11.2.0-2cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgcc-10-dev-arm64-cross (10.2.1-6cross1) ... Setting up libdebhelper-perl (13.4.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up python3 (3.9.2-3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up cpp-aarch64-linux-gnu (4:10.2.1-1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libstdc++-10-dev-arm64-cross (10.2.1-6cross1) ... Setting up gcc-10-aarch64-linux-gnu (10.2.1-6cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-10-aarch64-linux-gnu (10.2.1-6cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up gcc-aarch64-linux-gnu (4:10.2.1-1) ... Setting up debhelper (13.4.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:10.2.1-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu1) ... Setting up dpkg-cross (2.6.18+nmu1) ... Setting up crossbuild-essential-arm64 (12.9) ... Setting up libgcc-s1:arm64 (11.2.0-2) ... Setting up libc6:arm64 (2.31-16) ... Setting up libstdc++6:arm64 (11.2.0-2) ... Setting up liblsan0:arm64 (11.2.0-2) ... Setting up libitm1:arm64 (11.2.0-2) ... Setting up libtsan0:arm64 (11.2.0-2) ... Setting up libkeyutils1:arm64 (1.6.1-2) ... Setting up libssl1.1:arm64 (1.1.1k-1) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-2) ... Setting up libcrypt1:arm64 (1:4.4.25-1) ... Setting up libcom-err2:arm64 (1.46.4-1) ... Setting up libgomp1:arm64 (11.2.0-2) ... Setting up diamond-aligner:arm64 (2.0.7-1) ... Setting up libkrb5support0:arm64 (1.18.3-6) ... Setting up libasan5:arm64 (9.4.0-2) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libatomic1:arm64 (11.2.0-2) ... Setting up libk5crypto3:arm64 (1.18.3-6) ... Setting up libgfortran5:arm64 (11.2.0-2) ... Setting up libubsan1:arm64 (11.2.0-2) ... Setting up libcrypt-dev:arm64 (1:4.4.25-1) ... Setting up libkrb5-3:arm64 (1.18.3-6) ... Setting up libblas-dev:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libgcc-9-dev:arm64 (9.4.0-2) ... Setting up liblapack-dev:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.18.3-6) ... Setting up libtirpc3:arm64 (1.3.2-2) ... Setting up libtirpc-dev:arm64 (1.3.2-2) ... Setting up libnsl2:arm64 (1.3.0-2) ... Setting up libnsl-dev:arm64 (1.3.0-2) ... Setting up libc6-dev:arm64 (2.31-16) ... Setting up libstdc++-9-dev:arm64 (9.4.0-2) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.31-16) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-4 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-16 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-arm64-cross_10.2.1-6cross1 libstdc++-9-dev_9.4.0-2 libstdc++6_11.2.0-2 libstdc++6-arm64-cross_11.2.0-2cross1 linux-libc-dev_5.10.46-4 Package versions: adduser_3.118 apt_2.3.8 autoconf_2.69-14 automake_1:1.16.4-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.51 bash_5.1-3+b1 binutils_2.37-4 binutils-aarch64-linux-gnu_2.37-4 binutils-common_2.37-4 binutils-x86-64-linux-gnu_2.37-4 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-aarch64-linux-gnu_10.2.1-6cross1 cpp-8_8.4.0-7 cpp-aarch64-linux-gnu_4:10.2.1-1 cross-config_2.6.18+nmu1 crossbuild-essential-arm64_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.4.1 debian-archive-keyring_2021.1.1 debianutils_5.3-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diamond-aligner_2.0.7-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu1 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 fdisk_2.37.2-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-aarch64-linux-gnu_10.2.1-6cross1 g++-aarch64-linux-gnu_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-aarch64-linux-gnu_10.2.1-6cross1 gcc-10-aarch64-linux-gnu-base_10.2.1-6cross1 gcc-10-base_10.2.1-6 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(quilt) Source: proteinortho Binary: proteinortho Architecture: any Version: 6.0.31+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/proteinortho Vcs-Git: https://salsa.debian.org/med-team/proteinortho.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner, procps Package-List: proteinortho deb science optional arch=any Checksums-Sha1: 5e7bdb53e6bcdf449bc68ba20504f49385c8d442 515220 proteinortho_6.0.31+dfsg.orig.tar.xz 3742ef88d157888bb83f2df938df991e39d33d91 6428 proteinortho_6.0.31+dfsg-1.debian.tar.xz Checksums-Sha256: e58d650997616403d18f560fed176d4be173bbd7f44c0a9c16dd9596ffd19985 515220 proteinortho_6.0.31+dfsg.orig.tar.xz 795f9fe912c2add4092f39b7466baf89050a800c20d642c78a33d0c731222be3 6428 proteinortho_6.0.31+dfsg-1.debian.tar.xz Files: 883ef6c7b8398eda4c6e58660d2f065b 515220 proteinortho_6.0.31+dfsg.orig.tar.xz 1cde40d885f354e61b54e981931abe28 6428 proteinortho_6.0.31+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEZA/IUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafG4fBAAmvcQhENPXros/jlBZwqPU/duvCpA 8q396AVhmeFV4UbyN9Xea77P3VOMaH5VoDtgXQeP6TVZA8aa9UPhKcNPjxd/U+vC +FVOYkT25JKsDzN1TR5r3bh4XDGzkZLR7rKWlwelpJZ/82YI/PR9TtKNTTb8X0pl BW1SSXYSU11eH6H3LOLzOTrg/1zocYTcVnp5tlTIWA+J0L/xnpwTMvIPOyxiLRhR uhcyHUuO+TWAzPdgLHUAi0XgAi7SrWjvpzML0C0H6W6kN4Q3LnmbP/Sj/XfLP/3D aa/UhCuosshg/Z1tPx8jsVCzKC5TWm70CJ3jUDvTx5FnkPP8DaphOn3ki5035IwM eo3zvDbyHIL5xqt89R4/OuD29n24kYHw2o71jAkOt+U12QWBb1ZpaorET998EWxx BrQFb0xZm0XunDjFZwmvsjFnD904EFPoYtksMmLBMqjlJ092Pd1pNIrd21epIeUL ehfELRT1B+Ghk6m1J2hfal953HKshrKEB+/nwAsf12o4yIfp0jo1VqZgKhM5MbA/ 95B74wcrM8RTZbc6y8AnZUXNssT4m93l+7l1UvS4hQbHJ/bXr+QXpxMwdSAKhsee +9rykEMaquwt/LgaoLD06EM5Bqf+15gKlKY/wou5iEHa7Z8fDFvBAhhf4qVMFxLW qo3rwN4SylKS0M4= =PeE+ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.eKHV3nRo/trustedkeys.kbx': General error gpgv: Signature made Sun Aug 15 12:09:22 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proteinortho_6.0.31+dfsg-1.dsc dpkg-source: info: extracting proteinortho in /<> dpkg-source: info: unpacking proteinortho_6.0.31+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_6.0.31+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_diamond Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-b338e5f9-714c-4119-a8ff-393169cba612 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.0.31+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -rf src/BUILD test/C.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc make[1]: Entering directory '/<>' CC = aarch64-linux-gnu-gcc CCFLAGS = CXX = aarch64-linux-gnu-g++ CXXFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security MTUNEARCHFLAGS = LDFLAGS = -Wl,-z,relro -Wl,-z,now LDLIBS = STATIC = FALSE USELAPACK = TRUE Creating build directory ... [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) aarch64-linux-gnu-g++ -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /bin/sh: 1: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed too, now I try dynamic linking without -WL,-whole-archive (this should now work for OSX). aarch64-linux-gnu-g++ -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -lpthread /bin/sh: 3: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed (without -WL,-whole-archive) too too, now I try to openblas. aarch64-linux-gnu-g++ -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -lopenblas -pthread -lpthread /usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: cannot find -lopenblas collect2: error: ld returned 1 exit status ......last linking failed too too too, now I try to recompile lapack (v.3.8.0) and then compile proteinortho_clustering with dynamic linking. ......[ 33%] Extracting the LAPACK library cd src; tar -xzvf lapack-3.8.0.tar.gz ......[ 66%] Compiling the LAPACK library (using cmake + make) mkdir src/lapack-3.8.0/build; cd src/lapack-3.8.0/build; cmake .. -DCMAKE_CXX_COMPILER=aarch64-linux-gnu-g++ > /dev/null; make all -j4 /bin/sh: 10: cd: can't cd to src/lapack-3.8.0/build /bin/sh: 10: cmake: not found E: Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 2021-08-22T16:01:55Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3460 Build-Time: 9029 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 44 Job: proteinortho_6.0.31+dfsg-1 Machine Architecture: amd64 Package: proteinortho Package-Time: 9094 Source-Version: 6.0.31+dfsg-1 Space: 3460 Status: attempted Version: 6.0.31+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-08-22T16:01:55Z Build needed 02:31:34, 3460k disk space