sbuild (Debian sbuild) 0.81.2 (31 January 2021) on debian-ci-siliconvalley +==============================================================================+ | proteinortho 6.1.0+dfsg-2 (ppc64el) Mon, 04 Jul 2022 14:01:22 +0000 | +==============================================================================+ Package: proteinortho Version: 6.1.0+dfsg-2 Source Version: 6.1.0+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-81dfa68a-85b6-447e-9cca-d2d1342fc26d' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-CzGVMX/resolver-ny6jFh' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [165 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-07-04-0802.40-F-2022-07-02-2015.53.pdiff [104 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-07-04-0802.40-F-2022-07-02-2015.53.pdiff [115 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-07-04-0802.40-F-2022-07-02-2015.53.pdiff [104 kB] Get:6 http://localhost:3142/debian sid/main ppc64el Packages [9037 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-07-04-0802.40-F-2022-07-02-2015.53.pdiff [115 kB] Fetched 9549 kB in 3s (3749 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proteinortho.git Please use: git clone https://salsa.debian.org/med-team/proteinortho.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 358 kB of source archives. Get:1 http://localhost:3142/debian sid/main proteinortho 6.1.0+dfsg-2 (dsc) [2195 B] Get:2 http://localhost:3142/debian sid/main proteinortho 6.1.0+dfsg-2 (tar) [348 kB] Get:3 http://localhost:3142/debian sid/main proteinortho 6.1.0+dfsg-2 (diff) [7280 B] Fetched 358 kB in 3s (118 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/proteinortho-CzGVMX/proteinortho-6.1.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-CzGVMX' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [470 B] Get:5 copy:/<>/apt_archive ./ Packages [540 B] Fetched 1967 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-11-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:ppc64el dpkg-cross dwz file g++-11-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-11-cross-base gcc-11-powerpc64le-linux-gnu gcc-11-powerpc64le-linux-gnu-base gcc-12-base:ppc64el gcc-12-cross-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblas-dev:ppc64el libblas3:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:ppc64el libgcc-11-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libicu71 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblapack-dev:ppc64el liblapack3:ppc64el liblmdb0 liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libncurses6 libncursesw6 libnsl-dev:ppc64el libnsl2:ppc64el libpipeline1 libprocps8 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8 libsigsegv2 libsqlite3-0 libssl3:ppc64el libstdc++-11-dev:ppc64el libstdc++-11-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types ncbi-blast+ ncbi-data po-debconf procps python3 python3-minimal python3.10 python3.10-minimal readline-common sensible-utils ucf zlib1g:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch gcc-11-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:ppc64el glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el manpages-dev:ppc64el krb5-doc:ppc64el krb5-user:ppc64el libstdc++-11-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support readline-doc Recommended packages: med-config:ppc64el curl | wget | lynx libidn2-0:ppc64el libarchive-cpio-perl krb5-locales:ppc64el libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-11-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:ppc64el dpkg-cross dwz file g++-11-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-11-cross-base gcc-11-powerpc64le-linux-gnu gcc-11-powerpc64le-linux-gnu-base gcc-12-base:ppc64el gcc-12-cross-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblas-dev:ppc64el libblas3:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:ppc64el libgcc-11-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libicu71 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblapack-dev:ppc64el liblapack3:ppc64el liblmdb0 liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libncurses6 libncursesw6 libnsl-dev:ppc64el libnsl2:ppc64el libpipeline1 libprocps8 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8 libsigsegv2 libsqlite3-0 libssl3:ppc64el libstdc++-11-dev:ppc64el libstdc++-11-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types ncbi-blast+ ncbi-data po-debconf procps python3 python3-minimal python3.10 python3.10-minimal readline-common sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf zlib1g:ppc64el 0 upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 124 MB of archives. After this operation, 527 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpython3.10-minimal amd64 3.10.5-1 [828 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.4.8-1 [109 kB] Get:5 http://localhost:3142/debian sid/main amd64 python3.10-minimal amd64 3.10.5-1 [2093 kB] Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.10.4-1+b1 [38.9 kB] Get:7 http://localhost:3142/debian sid/main amd64 media-types all 8.0.0 [33.4 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:10 http://localhost:3142/debian sid/main amd64 readline-common all 8.1.2-1.2 [73.9 kB] Get:11 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.1.2-1.2 [168 kB] Get:12 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http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:24 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-6 [175 kB] Get:25 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:26 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:27 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38-4 [144 kB] Get:28 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-1 [38.6 kB] Get:29 http://localhost:3142/debian sid/main amd64 man-db amd64 2.10.2-1 [1411 kB] Get:30 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:31 http://localhost:3142/debian sid/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:32 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:33 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:34 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 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Get:45 http://localhost:3142/debian sid/main amd64 libgcc-s1-ppc64el-cross all 12.1.0-2cross1 [31.4 kB] Get:46 http://localhost:3142/debian sid/main amd64 libgomp1-ppc64el-cross all 12.1.0-2cross1 [120 kB] Get:47 http://localhost:3142/debian sid/main amd64 libitm1-ppc64el-cross all 12.1.0-2cross1 [28.4 kB] Get:48 http://localhost:3142/debian sid/main amd64 libatomic1-ppc64el-cross all 12.1.0-2cross1 [9540 B] Get:49 http://localhost:3142/debian sid/main amd64 libasan6-ppc64el-cross all 11.3.0-3cross1 [2028 kB] Get:50 http://localhost:3142/debian sid/main amd64 liblsan0-ppc64el-cross all 12.1.0-2cross1 [980 kB] Get:51 http://localhost:3142/debian sid/main amd64 libtsan0-ppc64el-cross all 11.3.0-3cross1 [2014 kB] Get:52 http://localhost:3142/debian sid/main amd64 libstdc++6-ppc64el-cross all 12.1.0-2cross1 [660 kB] Get:53 http://localhost:3142/debian sid/main amd64 libubsan1-ppc64el-cross all 12.1.0-2cross1 [896 kB] Get:54 http://localhost:3142/debian sid/main amd64 libquadmath0-ppc64el-cross all 12.1.0-2cross1 [149 kB] Get:55 http://localhost:3142/debian sid/main amd64 libgcc-11-dev-ppc64el-cross all 11.3.0-3cross1 [1269 kB] Get:56 http://localhost:3142/debian sid/main amd64 gcc-11-powerpc64le-linux-gnu amd64 11.3.0-3cross1 [15.7 MB] Get:57 http://localhost:3142/debian sid/main amd64 gcc-powerpc64le-linux-gnu amd64 4:11.2.0-2 [1468 B] Get:58 http://localhost:3142/debian sid/main amd64 linux-libc-dev-ppc64el-cross all 5.15.5-1cross1 [1569 kB] Get:59 http://localhost:3142/debian sid/main amd64 libc6-dev-ppc64el-cross all 2.33-1cross1 [2359 kB] Get:60 http://localhost:3142/debian sid/main amd64 libstdc++-11-dev-ppc64el-cross all 11.3.0-3cross1 [2057 kB] Get:61 http://localhost:3142/debian sid/main amd64 g++-11-powerpc64le-linux-gnu amd64 11.3.0-3cross1 [8827 kB] Get:62 http://localhost:3142/debian sid/main amd64 g++-powerpc64le-linux-gnu amd64 4:11.2.0-2 [1184 B] Get:63 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:64 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:65 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1 [708 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:68 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:69 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:70 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:71 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:72 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:73 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:74 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-1 [17.3 kB] Get:75 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:76 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:77 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:78 http://localhost:3142/debian sid/main amd64 crossbuild-essential-ppc64el all 12.9 [6716 B] Get:79 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.8 [195 kB] Get:80 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:81 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:82 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:83 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-3 [10.4 kB] Get:84 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:85 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:86 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-1 [179 kB] Get:87 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:88 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-6 [1310 kB] Get:89 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:90 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:91 http://localhost:3142/debian sid/main amd64 debhelper all 13.8 [1070 kB] Get:92 http://localhost:3142/debian sid/main ppc64el gcc-12-base ppc64el 12.1.0-5 [207 kB] Get:93 http://localhost:3142/debian sid/main ppc64el libgcc-s1 ppc64el 12.1.0-5 [31.4 kB] Get:94 http://localhost:3142/debian sid/main ppc64el libc6 ppc64el 2.33-7 [2898 kB] Get:95 http://localhost:3142/debian sid/main ppc64el libstdc++6 ppc64el 12.1.0-5 [706 kB] Get:96 http://localhost:3142/debian sid/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-4 [95.4 kB] Get:97 http://localhost:3142/debian sid/main ppc64el diamond-aligner ppc64el 2.0.15-1 [1589 kB] Get:98 http://localhost:3142/debian sid/main ppc64el gcc-11-base ppc64el 11.3.0-4 [209 kB] Get:99 http://localhost:3142/debian sid/main ppc64el libasan6 ppc64el 11.3.0-4 [2038 kB] Get:100 http://localhost:3142/debian sid/main ppc64el libatomic1 ppc64el 12.1.0-5 [9784 B] Get:101 http://localhost:3142/debian sid/main ppc64el libblas3 ppc64el 3.10.1-2 [119 kB] Get:102 http://localhost:3142/debian sid/main ppc64el libblas-dev ppc64el 3.10.1-2 [127 kB] Get:103 http://localhost:3142/debian sid/main ppc64el linux-libc-dev ppc64el 5.18.5-1 [1588 kB] Get:104 http://localhost:3142/debian sid/main ppc64el libcrypt1 ppc64el 1:4.4.28-1 [97.7 kB] Get:105 http://localhost:3142/debian sid/main ppc64el libcrypt-dev ppc64el 1:4.4.28-1 [132 kB] Get:106 http://localhost:3142/debian sid/main ppc64el libcom-err2 ppc64el 1.46.5-2 [76.2 kB] Get:107 http://localhost:3142/debian sid/main ppc64el libkrb5support0 ppc64el 1.19.2-2+b2 [69.8 kB] Get:108 http://localhost:3142/debian sid/main ppc64el libk5crypto3 ppc64el 1.19.2-2+b2 [125 kB] Get:109 http://localhost:3142/debian sid/main ppc64el libkeyutils1 ppc64el 1.6.3-1 [16.9 kB] Get:110 http://localhost:3142/debian sid/main ppc64el libssl3 ppc64el 3.0.4-2 [2052 kB] Get:111 http://localhost:3142/debian sid/main ppc64el libkrb5-3 ppc64el 1.19.2-2+b2 [398 kB] Get:112 http://localhost:3142/debian sid/main ppc64el libgssapi-krb5-2 ppc64el 1.19.2-2+b2 [182 kB] Get:113 http://localhost:3142/debian sid/main ppc64el libtirpc3 ppc64el 1.3.2-2 [95.4 kB] Get:114 http://localhost:3142/debian sid/main ppc64el libnsl2 ppc64el 1.3.0-2 [44.8 kB] Get:115 http://localhost:3142/debian sid/main ppc64el libtirpc-dev ppc64el 1.3.2-2 [209 kB] Get:116 http://localhost:3142/debian sid/main ppc64el libnsl-dev ppc64el 1.3.0-2 [73.6 kB] Get:117 http://localhost:3142/debian sid/main ppc64el libc6-dev ppc64el 2.33-7 [2369 kB] Get:118 http://localhost:3142/debian sid/main ppc64el libgomp1 ppc64el 12.1.0-5 [123 kB] Get:119 http://localhost:3142/debian sid/main ppc64el libitm1 ppc64el 12.1.0-5 [28.9 kB] Get:120 http://localhost:3142/debian sid/main ppc64el liblsan0 ppc64el 12.1.0-5 [981 kB] Get:121 http://localhost:3142/debian sid/main ppc64el libtsan0 ppc64el 11.3.0-4 [2022 kB] Get:122 http://localhost:3142/debian sid/main ppc64el libubsan1 ppc64el 12.1.0-5 [897 kB] Get:123 http://localhost:3142/debian sid/main ppc64el libquadmath0 ppc64el 12.1.0-5 [149 kB] Get:124 http://localhost:3142/debian sid/main ppc64el libgcc-11-dev ppc64el 11.3.0-4 [1273 kB] Get:125 http://localhost:3142/debian sid/main ppc64el libgfortran5 ppc64el 12.1.0-5 [495 kB] Get:126 http://localhost:3142/debian sid/main ppc64el liblapack3 ppc64el 3.10.1-2 [1696 kB] Get:127 http://localhost:3142/debian sid/main ppc64el liblapack-dev ppc64el 3.10.1-2 [3423 kB] Get:128 http://localhost:3142/debian sid/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:129 http://localhost:3142/debian sid/main amd64 libmbedcrypto7 amd64 2.28.0-2 [272 kB] Get:130 http://localhost:3142/debian sid/main amd64 libmbedx509-1 amd64 2.28.0-2 [127 kB] Get:131 http://localhost:3142/debian sid/main amd64 libmbedtls14 amd64 2.28.0-2 [161 kB] Get:132 http://localhost:3142/debian sid/main ppc64el libstdc++-11-dev ppc64el 11.3.0-4 [2054 kB] Get:133 http://localhost:3142/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:134 http://localhost:3142/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-3+b1 [11.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 124 MB in 56s (2213 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12532 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package libpython3.10-minimal:amd64. Preparing to unpack .../libpython3.10-minimal_3.10.5-1_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.5-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.4.8-1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.5-1_amd64.deb ... Unpacking python3.10-minimal (3.10.5-1) ... Setting up libpython3.10-minimal:amd64 (3.10.5-1) ... Setting up libexpat1:amd64 (2.4.8-1) ... Setting up python3.10-minimal (3.10.5-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12850 files and directories currently installed.) 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Unpacking libatomic1:ppc64el (12.1.0-5) ... Selecting previously unselected package libblas3:ppc64el. Preparing to unpack .../085-libblas3_3.10.1-2_ppc64el.deb ... Unpacking libblas3:ppc64el (3.10.1-2) ... Selecting previously unselected package libblas-dev:ppc64el. Preparing to unpack .../086-libblas-dev_3.10.1-2_ppc64el.deb ... Unpacking libblas-dev:ppc64el (3.10.1-2) ... Selecting previously unselected package linux-libc-dev:ppc64el. Preparing to unpack .../087-linux-libc-dev_5.18.5-1_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (5.18.5-1) ... Selecting previously unselected package libcrypt1:ppc64el. Preparing to unpack .../088-libcrypt1_1%3a4.4.28-1_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.28-1) ... Selecting previously unselected package libcrypt-dev:ppc64el. Preparing to unpack .../089-libcrypt-dev_1%3a4.4.28-1_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.28-1) ... Selecting previously unselected package libcom-err2:ppc64el. 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Selecting previously unselected package libgssapi-krb5-2:ppc64el. Preparing to unpack .../096-libgssapi-krb5-2_1.19.2-2+b2_ppc64el.deb ... Unpacking libgssapi-krb5-2:ppc64el (1.19.2-2+b2) ... Selecting previously unselected package libtirpc3:ppc64el. Preparing to unpack .../097-libtirpc3_1.3.2-2_ppc64el.deb ... Unpacking libtirpc3:ppc64el (1.3.2-2) ... Selecting previously unselected package libnsl2:ppc64el. Preparing to unpack .../098-libnsl2_1.3.0-2_ppc64el.deb ... Unpacking libnsl2:ppc64el (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:ppc64el. Preparing to unpack .../099-libtirpc-dev_1.3.2-2_ppc64el.deb ... Unpacking libtirpc-dev:ppc64el (1.3.2-2) ... Selecting previously unselected package libnsl-dev:ppc64el. Preparing to unpack .../100-libnsl-dev_1.3.0-2_ppc64el.deb ... Unpacking libnsl-dev:ppc64el (1.3.0-2) ... Selecting previously unselected package libc6-dev:ppc64el. Preparing to unpack .../101-libc6-dev_2.33-7_ppc64el.deb ... 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Unpacking libquadmath0:ppc64el (12.1.0-5) ... Selecting previously unselected package libgcc-11-dev:ppc64el. Preparing to unpack .../108-libgcc-11-dev_11.3.0-4_ppc64el.deb ... Unpacking libgcc-11-dev:ppc64el (11.3.0-4) ... Selecting previously unselected package libgfortran5:ppc64el. Preparing to unpack .../109-libgfortran5_12.1.0-5_ppc64el.deb ... Unpacking libgfortran5:ppc64el (12.1.0-5) ... Selecting previously unselected package liblapack3:ppc64el. Preparing to unpack .../110-liblapack3_3.10.1-2_ppc64el.deb ... Unpacking liblapack3:ppc64el (3.10.1-2) ... Selecting previously unselected package liblapack-dev:ppc64el. Preparing to unpack .../111-liblapack-dev_3.10.1-2_ppc64el.deb ... Unpacking liblapack-dev:ppc64el (3.10.1-2) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../112-liblmdb0_0.9.24-1_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.24-1) ... Selecting previously unselected package libmbedcrypto7:amd64. 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Selecting previously unselected package sbuild-build-depends-main-dummy:ppc64el. Preparing to unpack .../119-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up media-types (8.0.0) ... Setting up libpipeline1:amd64 (1.5.6-1) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libicu71:amd64 (71.1-3) ... Setting up gcc-11-base:ppc64el (11.3.0-4) ... Setting up libfile-which-perl (1.27-1) ... Setting up gcc-12-cross-base (12.1.0-2cross1) ... Setting up bsdextrautils (2.38-4) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libc6-ppc64el-cross (2.33-1cross1) ... Setting up libdebhelper-perl (13.8) ... Setting up libsqlite3-0:amd64 (3.39.0-1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up linux-libc-dev:ppc64el (5.18.5-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-6) ... Setting up file (1:5.41-4) ... Setting up libgomp1-ppc64el-cross (12.1.0-2cross1) ... Setting up libyaml-perl (1.30-1) ... Setting up gcc-12-base:ppc64el (12.1.0-5) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libmbedcrypto7:amd64 (2.28.0-2) ... Setting up libncurses6:amd64 (6.3+20220423-2) ... Setting up libsigsegv2:amd64 (2.14-1) ... Setting up gcc-11-powerpc64le-linux-gnu-base:amd64 (11.3.0-3cross1) ... Setting up autopoint (0.21-6) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libitm1-ppc64el-cross (12.1.0-2cross1) ... Setting up gcc-11-cross-base (11.3.0-3cross1) ... Setting up libatomic1-ppc64el-cross (12.1.0-2cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up linux-libc-dev-ppc64el-cross (5.15.5-1cross1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libsub-override-perl (0.09-3) ... Setting up libgcc-s1-ppc64el-cross (12.1.0-2cross1) ... Setting up binutils-powerpc64le-linux-gnu (2.38.50.20220629-4) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:amd64 (0.187-1) ... Setting up readline-common (8.1.2-1.2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libprocps8:amd64 (2:3.3.17-7+b1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-6) ... Setting up libasan6-ppc64el-cross (11.3.0-3cross1) ... Setting up libc6-dev-ppc64el-cross (2.33-1cross1) ... Setting up libmbedx509-1:amd64 (2.28.0-2) ... Setting up libmbedtls14:amd64 (2.28.0-2) ... Setting up libtool (2.4.7-4) ... Setting up libquadmath0-ppc64el-cross (12.1.0-2cross1) ... Setting up libreadline8:amd64 (8.1.2-1.2) ... Setting up m4 (1.4.18-5) ... Setting up cpp-11-powerpc64le-linux-gnu (11.3.0-3cross1) ... Setting up liblsan0-ppc64el-cross (12.1.0-2cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:amd64 (3.10.5-1) ... Setting up libtsan0-ppc64el-cross (11.3.0-3cross1) ... Setting up ucf (3.0043) ... Setting up libstdc++6-ppc64el-cross (12.1.0-2cross1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up procps (2:3.3.17-7+b1) ... Setting up cpp-powerpc64le-linux-gnu (4:11.2.0-2) ... Setting up libpython3-stdlib:amd64 (3.10.4-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.10 (3.10.5-1) ... Setting up libubsan1-ppc64el-cross (12.1.0-2cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.10.4-1+b1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ncbi-blast+ (2.12.0+ds-3+b1) ... Setting up dh-autoreconf (20) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-11-dev-ppc64el-cross (11.3.0-3cross1) ... Setting up gcc-11-powerpc64le-linux-gnu (11.3.0-3cross1) ... Setting up debhelper (13.8) ... Setting up libstdc++-11-dev-ppc64el-cross (11.3.0-3cross1) ... Setting up gcc-powerpc64le-linux-gnu (4:11.2.0-2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-11-powerpc64le-linux-gnu (11.3.0-3cross1) ... Setting up g++-powerpc64le-linux-gnu (4:11.2.0-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-ppc64el (12.9) ... Setting up libgcc-s1:ppc64el (12.1.0-5) ... Setting up libc6:ppc64el (2.33-7) ... Setting up libstdc++6:ppc64el (12.1.0-5) ... Setting up liblsan0:ppc64el (12.1.0-5) ... Setting up libitm1:ppc64el (12.1.0-5) ... Setting up libtsan0:ppc64el (11.3.0-4) ... Setting up libkeyutils1:ppc64el (1.6.3-1) ... Setting up libssl3:ppc64el (3.0.4-2) ... Setting up zlib1g:ppc64el (1:1.2.11.dfsg-4) ... Setting up libcrypt1:ppc64el (1:4.4.28-1) ... Setting up libcom-err2:ppc64el (1.46.5-2) ... Setting up libgomp1:ppc64el (12.1.0-5) ... Setting up diamond-aligner:ppc64el (2.0.15-1) ... Setting up libasan6:ppc64el (11.3.0-4) ... Setting up libkrb5support0:ppc64el (1.19.2-2+b2) ... Setting up libblas3:ppc64el (3.10.1-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libquadmath0:ppc64el (12.1.0-5) ... Setting up libatomic1:ppc64el (12.1.0-5) ... Setting up libk5crypto3:ppc64el (1.19.2-2+b2) ... Setting up libgfortran5:ppc64el (12.1.0-5) ... Setting up libubsan1:ppc64el (12.1.0-5) ... Setting up libgcc-11-dev:ppc64el (11.3.0-4) ... Setting up libcrypt-dev:ppc64el (1:4.4.28-1) ... Setting up libkrb5-3:ppc64el (1.19.2-2+b2) ... Setting up libblas-dev:ppc64el (3.10.1-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up liblapack3:ppc64el (3.10.1-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up liblapack-dev:ppc64el (3.10.1-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up libgssapi-krb5-2:ppc64el (1.19.2-2+b2) ... Setting up libtirpc3:ppc64el (1.3.2-2) ... Setting up libtirpc-dev:ppc64el (1.3.2-2) ... Setting up libnsl2:ppc64el (1.3.0-2) ... Setting up libnsl-dev:ppc64el (1.3.0-2) ... Setting up libc6-dev:ppc64el (2.33-7) ... Setting up libstdc++-11-dev:ppc64el (11.3.0-4) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.33-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-15-amd64 #1 SMP Debian 5.10.120-1 (2022-06-09) amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220629-4 dpkg-dev_1.21.9 g++-11_11.3.0-4 gcc-11_11.3.0-4 libc6-dev_2.33-7 libstdc++-11-dev_11.3.0-4 libstdc++-11-dev-ppc64el-cross_11.3.0-3cross1 libstdc++6_12.1.0-5 libstdc++6-ppc64el-cross_12.1.0-2cross1 linux-libc-dev_5.18.5-1 Package versions: adduser_3.121 apt_2.5.1 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6.1 binutils_2.38.50.20220629-4 binutils-common_2.38.50.20220629-4 binutils-powerpc64le-linux-gnu_2.38.50.20220629-4 binutils-x86-64-linux-gnu_2.38.50.20220629-4 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.3.0-4 cpp-11-powerpc64le-linux-gnu_11.3.0-3cross1 cpp-powerpc64le-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-ppc64el_12.9 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.8 debian-archive-keyring_2021.1.1 debianutils_5.7-0.2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diamond-aligner_2.0.15-1 diffutils_1:3.7-5 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:11.2.0-2 g++-11_11.3.0-4 g++-11-powerpc64le-linux-gnu_11.3.0-3cross1 g++-powerpc64le-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-11_11.3.0-4 gcc-11-base_11.3.0-4 gcc-11-cross-base_11.3.0-3cross1 gcc-11-powerpc64le-linux-gnu_11.3.0-3cross1 gcc-11-powerpc64le-linux-gnu-base_11.3.0-3cross1 gcc-12-base_12.1.0-5 gcc-12-cross-base_12.1.0-2cross1 gcc-9-base_9.5.0-1 gcc-powerpc64le-linux-gnu_4:11.2.0-2 gettext_0.21-6 gettext-base_0.21-6 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.5.1 libarchive-zip-perl_1.68-1 libasan6_11.3.0-4 libasan6-ppc64el-cross_11.3.0-3cross1 libatomic1_12.1.0-5 libatomic1-ppc64el-cross_12.1.0-2cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.50.20220629-4 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38-4 libbz2-1.0_1.0.8-5 libc-bin_2.33-7 libc-dev-bin_2.33-7 libc6_2.33-7 libc6-dev_2.33-7 libc6-dev-ppc64el-cross_2.33-1cross1 libc6-ppc64el-cross_2.33-1cross1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcc1-0_12.1.0-5 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 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logsave_1.46.5-2 lsb-base_11.2 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38-4 ncbi-blast+_2.12.0+ds-3+b1 ncbi-data_6.1.20170106+dfsg1-9 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-4 perl-base_5.34.0-4 perl-modules-5.34_5.34.0-4 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7+b1 python3_3.10.4-1+b1 python3-minimal_3.10.4-1+b1 python3.10_3.10.5-1 python3.10-minimal_3.10.5-1 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 util-linux_2.38-4 util-linux-extra_2.38-4 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: proteinortho Binary: proteinortho Architecture: any Version: 6.1.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/proteinortho Vcs-Git: https://salsa.debian.org/med-team/proteinortho.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper Package-List: proteinortho deb science optional arch=any Checksums-Sha1: 35e00588c7a564f6314bf52dcf0cf8624d1923af 348108 proteinortho_6.1.0+dfsg.orig.tar.xz 38f09b5022015d3f611d608af6588732a5793061 7280 proteinortho_6.1.0+dfsg-2.debian.tar.xz Checksums-Sha256: 7e061c08b2565d0b129cef76d3341f464b93bc32043e63da851fbe1ec815d40c 348108 proteinortho_6.1.0+dfsg.orig.tar.xz 9f3379e6ca0314d4946458828ef1edf9e3f3992304afc8e51675ce658c655661 7280 proteinortho_6.1.0+dfsg-2.debian.tar.xz Files: 9761656ef525c9f8f6617a3caf6863f2 348108 proteinortho_6.1.0+dfsg.orig.tar.xz 7c1f6fbf0cbf8194647e08d73ef388aa 7280 proteinortho_6.1.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmK+y7IRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHYRQ/8DYyrp8Mp8TQbjGhIifCCC9k+s4cyUsf0 4cv63tIdvFGIk8ruqDsmlO4d1+esoAIHeFFSZ9h2QeP5EC39WYfRuFJ2FhXh2FDL ZM25hBy1NSH3fEWT3Dk1XHZ6K9UTrQVXy7Y98qNgBBd5mKrDZefVm0aSOtLzRX8Z wDrRg45ArEq3Vec1qlZW6fOwX/xJAFAxItnsZVfmy1wynVj3DmcElLfPIhk14+WN kWzSWp5lvKqVhiC5x5PGbkJDIZvhov3EUhJPMnkmVTXQiggxF9uHQt9tXOltVrNZ +nVA4kawtlg2/MxwvrUu3pgAEuazpj+AOElkI2GWAv9BD9FgO2tsFqRrHaFL/6+H ns6v2SczsfTokxXXOhKvd3Y8R+lCmML+dt38t8bSablaDjfmOjlwI7SDypsjB68t 8ZVplkzisAhfwXzXP0ucQ6OQMBu8VeLWn2Sdzy87V3XcmyEEJ2jKx8RkNzpPyBUk vV7vkXvPJWBrOX9nu/cZfUxi8h1rPpR/zKJq6fktB/XY8WxFEZrm4wWeWvQNgXZh O/PhBROaqqJ8xwK+cRzn+mp0/ysqn+SO2fhTuTgWBMJX5n2SyuWLf8DJRrC8bpDR 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CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-81dfa68a-85b6-447e-9cca-d2d1342fc26d SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.1.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -rf src/BUILD test/C.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=powerpc64le-linux-gnu-pkg-config CXX=powerpc64le-linux-gnu-g\+\+ CC=powerpc64le-linux-gnu-gcc make[1]: Entering directory '/<>' CC = powerpc64le-linux-gnu-gcc CCFLAGS = CXX = powerpc64le-linux-gnu-g++ CXXFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security MTUNEARCHFLAGS = LDFLAGS = -Wl,-z,relro -Wl,-z,now LDLIBS = STATIC = FALSE USELAPACK = TRUE Creating build directory ... [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) powerpc64le-linux-gnu-g++ -std=c++11 -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /bin/sh: 1: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed too, now I try dynamic linking without -WL,-whole-archive (this should now work for OSX). powerpc64le-linux-gnu-g++ -std=c++11 -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -lpthread /bin/sh: 3: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed (without -WL,-whole-archive) too too, now I try to openblas. powerpc64le-linux-gnu-g++ -std=c++11 -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -lopenblas -pthread -lpthread /usr/lib/gcc-cross/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/bin/ld: cannot find -lopenblas: No such file or directory collect2: error: ld returned 1 exit status ......last linking failed too too too, now I try to recompile lapack (v.3.8.0) and then compile proteinortho_clustering with dynamic linking. ......[ 33%] Extracting the LAPACK library cd src; tar -xzvf lapack-3.8.0.tar.gz ......[ 66%] Compiling the LAPACK library (using cmake + make) mkdir src/lapack-3.8.0/build; cd src/lapack-3.8.0/build; cmake .. -DCMAKE_CXX_COMPILER=powerpc64le-linux-gnu-g++ > /dev/null; make all -j4 /bin/sh: 10: cd: can't cd to src/lapack-3.8.0/build /bin/sh: 10: cmake: not found E: Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 2022-07-04T16:33:09Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3340 Build-Time: 9024 Distribution: unstable Fail-Stage: build Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 70 Job: proteinortho_6.1.0+dfsg-2 Machine Architecture: amd64 Package: proteinortho Package-Time: 9107 Source-Version: 6.1.0+dfsg-2 Space: 3340 Status: attempted Version: 6.1.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 2022-07-04T16:33:09Z Build needed 02:31:47, 3340k disk space