sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | proteinortho 6.2.3+dfsg-1 (amd64) Tue, 20 Jun 2023 21:07:59 +0000 | +==============================================================================+ Package: proteinortho Version: 6.2.3+dfsg-1 Source Version: 6.2.3+dfsg-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.3BOY2CJVaO... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-jqhysV/resolver-C9GuL4' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [199 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.1 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9354 kB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [9513 kB] Fetched 29.2 MB in 8s (3790 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-12 g++-12 gcc-12 gcc-12-base gcc-13-base libasan8 libatomic1 libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 libhwasan0 libisl23 libitm1 liblsan0 libstdc++-12-dev libstdc++6 libsystemd0 libtsan2 libubsan1 libudev1 21 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 46.5 MB of archives. After this operation, 833 kB of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 libasan8 arm64 13.1.0-6 [2406 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libubsan1 arm64 13.1.0-6 [980 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libstdc++-12-dev arm64 12.3.0-4 [2021 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 g++-12 arm64 12.3.0-4 [9078 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 gcc-12 arm64 12.3.0-4 [16.4 MB] Get:6 http://mirror.einval.org/debian unstable/main arm64 cpp-12 arm64 12.3.0-4 [8222 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gcc-12-base arm64 12.3.0-4 [39.5 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libgcc-12-dev arm64 12.3.0-4 [963 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libtsan2 arm64 13.1.0-6 [2278 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 gcc-13-base arm64 13.1.0-6 [38.4 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libstdc++6 arm64 13.1.0-6 [621 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 liblsan0 arm64 13.1.0-6 [1069 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libitm1 arm64 13.1.0-6 [23.8 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libhwasan0 arm64 13.1.0-6 [1120 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libgomp1 arm64 13.1.0-6 [115 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libcc1-0 arm64 13.1.0-6 [41.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libatomic1 arm64 13.1.0-6 [10.2 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1 arm64 13.1.0-6 [40.9 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libisl23 arm64 0.26-3 [626 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libsystemd0 arm64 253-3 [314 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libudev1 arm64 253-3 [106 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.5 MB in 0s (94.1 MB/s) (Reading database ... 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NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proteinortho.git Please use: git clone https://salsa.debian.org/med-team/proteinortho.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 373 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main proteinortho 6.2.3+dfsg-1 (dsc) [1531 B] Get:2 http://mirror.einval.org/debian unstable/main proteinortho 6.2.3+dfsg-1 (tar) [364 kB] Get:3 http://mirror.einval.org/debian unstable/main proteinortho 6.2.3+dfsg-1 (diff) [7036 B] Fetched 373 kB in 0s (1407 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/proteinortho-jqhysV/proteinortho-6.2.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-jqhysV' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [826 B] Get:5 copy:/<>/apt_archive ./ Packages [834 B] Fetched 2269 B in 0s (127 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:amd64 dpkg-cross dwz fakeroot file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-13-base:amd64 gcc-13-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libblas-dev:amd64 libblas3:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblapack-dev:amd64 liblapack3:amd64 liblmdb0 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl-dev:amd64 libnsl2:amd64 libpcre3 libpipeline1 libproc2-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 libsqlite3-0 libssl3:amd64 libstdc++-12-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db media-types ncbi-blast+ ncbi-data po-debconf procps python3 python3-minimal python3.11 python3.11-minimal readline-common sensible-utils ucf zlib1g:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-x86-64-linux-gnu gcc-12-doc gcc-12-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 libstdc++-12-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support readline-doc Recommended packages: med-config:amd64 curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl krb5-locales:amd64 libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:amd64 dpkg-cross dwz fakeroot file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-13-base:amd64 gcc-13-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libblas-dev:amd64 libblas3:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblapack-dev:amd64 liblapack3:amd64 liblmdb0 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl-dev:amd64 libnsl2:amd64 libpcre3 libpipeline1 libproc2-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 libsqlite3-0 libssl3:amd64 libstdc++-12-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db media-types ncbi-blast+ ncbi-data po-debconf procps python3 python3-minimal python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:amd64 sensible-utils ucf zlib1g:amd64 0 upgraded, 134 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [956 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libpython3.11-minimal arm64 3.11.4-1 [808 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.5.0-2 [84.8 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 python3.11-minimal arm64 3.11.4-1 [1851 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 media-types all 10.0.0 [26.1 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.4-4 [122 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.40.1-2 [786 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libpython3.11-stdlib arm64 3.11.4-1 [1751 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 python3.11 arm64 3.11.4-1 [579 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get:15 http://mirror.einval.org/debian unstable/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.3-1 [60.5 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.3-1 [752 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.20 [19.3 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.44-3 [42.5 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-12 [159 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-3 [276 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-12 [495 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 gcc-12-x86-64-linux-gnu-base arm64 12.3.0-4cross1 [39.8 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 cpp-12-x86-64-linux-gnu arm64 12.3.0-4cross1 [8842 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:12.2.0-3 [3980 B] Get:37 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.40.50.20230611-2 [2388 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 gcc-12-cross-base all 12.3.0-4cross1 [35.2 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.1.0-6cross1 [34.1 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 13.1.0-6cross1 [57.8 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 13.1.0-6cross1 [128 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 13.1.0-6cross1 [25.5 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 13.1.0-6cross1 [9052 B] Get:45 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 13.1.0-6cross1 [2552 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 13.1.0-6cross1 [1101 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 13.1.0-6cross1 [2326 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.36-8cross1 [1472 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 13.1.0-6cross1 [648 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 13.1.0-6cross1 [1008 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 13.1.0-6cross1 [145 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libgcc-12-dev-amd64-cross all 12.3.0-4cross1 [2435 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 gcc-12-x86-64-linux-gnu arm64 12.3.0-4cross1 [17.6 MB] Get:54 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:12.2.0-3 [1472 B] Get:55 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.1.4-1cross1 [1839 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.36-8cross1 [1894 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libstdc++-12-dev-amd64-cross all 12.3.0-4cross1 [2048 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 g++-12-x86-64-linux-gnu arm64 12.3.0-4cross1 [9672 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:12.2.0-3 [1176 B] Get:60 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.30-2 [63.4 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:76 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-5 [517 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get:81 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:83 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-12 [1248 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.4 [942 kB] Get:89 http://mirror.einval.org/debian unstable/main amd64 gcc-13-base amd64 13.1.0-6 [38.4 kB] Get:90 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 13.1.0-6 [57.7 kB] Get:91 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.36-9 [2753 kB] Get:92 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 13.1.0-6 [693 kB] Get:93 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:94 http://mirror.einval.org/debian unstable/main amd64 diamond-aligner amd64 2.1.3-1 [2434 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.31-1.2 [27.9 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.31-1.2 [66.4 kB] Get:97 http://mirror.einval.org/debian unstable/main amd64 gcc-12-base amd64 12.3.0-4 [39.5 kB] Get:98 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 13.1.0-6 [2552 kB] Get:99 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 13.1.0-6 [9292 B] Get:100 http://mirror.einval.org/debian unstable/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:101 http://mirror.einval.org/debian unstable/main amd64 libblas-dev amd64 3.11.0-2 [158 kB] Get:102 http://mirror.einval.org/debian unstable/main amd64 linux-libc-dev amd64 6.3.7-1 [1779 kB] Get:103 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.35-1 [89.7 kB] Get:104 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.35-1 [118 kB] Get:105 http://mirror.einval.org/debian unstable/main amd64 libcom-err2 amd64 1.47.0-2 [19.8 kB] Get:106 http://mirror.einval.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-2 [32.3 kB] Get:107 http://mirror.einval.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-2 [79.0 kB] Get:108 http://mirror.einval.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:109 http://mirror.einval.org/debian unstable/main amd64 libssl3 amd64 3.0.9-1 [2016 kB] Get:110 http://mirror.einval.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-2 [331 kB] Get:111 http://mirror.einval.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-2 [134 kB] Get:112 http://mirror.einval.org/debian unstable/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:113 http://mirror.einval.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:114 http://mirror.einval.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:115 http://mirror.einval.org/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:116 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.36-9 [1898 kB] Get:117 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 13.1.0-6 [131 kB] Get:118 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 13.1.0-6 [26.1 kB] Get:119 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 13.1.0-6 [1102 kB] Get:120 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 13.1.0-6 [2326 kB] Get:121 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 13.1.0-6 [1009 kB] Get:122 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 13.1.0-6 [145 kB] Get:123 http://mirror.einval.org/debian unstable/main amd64 libgcc-12-dev amd64 12.3.0-4 [2432 kB] Get:124 http://mirror.einval.org/debian unstable/main amd64 libgfortran5 amd64 13.1.0-6 [804 kB] Get:125 http://mirror.einval.org/debian unstable/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:126 http://mirror.einval.org/debian unstable/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 liblmdb0 arm64 0.9.24-1 [43.7 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libmbedcrypto7 arm64 2.28.3-1 [263 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libmbedx509-1 arm64 2.28.3-1 [127 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 libmbedtls14 arm64 2.28.3-1 [156 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libpcre3 arm64 2:8.39-15 [313 kB] Get:132 http://mirror.einval.org/debian unstable/main amd64 libstdc++-12-dev amd64 12.3.0-4 [2066 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 ncbi-blast+ arm64 2.12.0+ds-3+b1 [10.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 131 MB in 2s (80.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 10823 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../libpython3.11-minimal_3.11.4-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.4-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-2_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.4-1_arm64.deb ... Unpacking python3.11-minimal (3.11.4-1) ... Setting up libpython3.11-minimal:arm64 (3.11.4-1) ... Setting up libexpat1:arm64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.4-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 11153 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../2-libncursesw6_6.4-4_arm64.deb ... Unpacking libncursesw6:arm64 (6.4-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../4-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../5-libsqlite3-0_3.40.1-2_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.40.1-2) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.4-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.4-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.4-1_arm64.deb ... Unpacking python3.11 (3.11.4-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... 11604 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.3-1_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.3-1) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.3-1_arm64.deb ... Unpacking procps (2:4.0.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../005-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. 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Setting up gcc-12-x86-64-linux-gnu-base:arm64 (12.3.0-4cross1) ... Setting up binutils-x86-64-linux-gnu (2.40.50.20230611-2) ... Setting up cpp-12-x86-64-linux-gnu (12.3.0-4cross1) ... Setting up libstdc++6-amd64-cross (13.1.0-6cross1) ... Setting up cpp-x86-64-linux-gnu (4:12.2.0-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libmbedx509-1:arm64 (2.28.3-1) ... Setting up libmbedtls14:arm64 (2.28.3-1) ... Setting up libtool (2.4.7-5) ... Setting up libasan8-amd64-cross (13.1.0-6cross1) ... Setting up liblsan0-amd64-cross (13.1.0-6cross1) ... Setting up libc6-dev-amd64-cross (2.36-8cross1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libtsan2-amd64-cross (13.1.0-6cross1) ... Setting up libgomp1-amd64-cross (13.1.0-6cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libitm1-amd64-cross (13.1.0-6cross1) ... Setting up libatomic1-amd64-cross (13.1.0-6cross1) ... Setting up libubsan1-amd64-cross (13.1.0-6cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libgcc-12-dev-amd64-cross (12.3.0-4cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.4-1) ... Setting up libstdc++-12-dev-amd64-cross (12.3.0-4cross1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-12-x86-64-linux-gnu (12.3.0-4cross1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.4-1) ... Setting up gcc-x86-64-linux-gnu (4:12.2.0-3) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up ncbi-blast+ (2.12.0+ds-3+b1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-12-x86-64-linux-gnu (12.3.0-4cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:12.2.0-3) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libgcc-s1:amd64 (13.1.0-6) ... Setting up libc6:amd64 (2.36-9) ... Setting up libasan8:amd64 (13.1.0-6) ... Setting up libtsan2:amd64 (13.1.0-6) ... Setting up libstdc++6:amd64 (13.1.0-6) ... Setting up liblsan0:amd64 (13.1.0-6) ... Setting up libitm1:amd64 (13.1.0-6) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libssl3:amd64 (3.0.9-1) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-1) ... Setting up libcrypt1:amd64 (1:4.4.35-1) ... Setting up libcom-err2:amd64 (1.47.0-2) ... Setting up libgomp1:amd64 (13.1.0-6) ... Setting up diamond-aligner:amd64 (2.1.3-1) ... Setting up libkrb5support0:amd64 (1.20.1-2) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libquadmath0:amd64 (13.1.0-6) ... Setting up libatomic1:amd64 (13.1.0-6) ... Setting up libk5crypto3:amd64 (1.20.1-2) ... Setting up libgfortran5:amd64 (13.1.0-6) ... Setting up libubsan1:amd64 (13.1.0-6) ... Setting up libcrypt-dev:amd64 (1:4.4.35-1) ... Setting up libkrb5-3:amd64 (1.20.1-2) ... Setting up libblas-dev:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libgcc-12-dev:amd64 (12.3.0-4) ... Setting up liblapack-dev:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.20.1-2) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9) ... Setting up libstdc++-12-dev:amd64 (12.3.0-4) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.40.50.20230611-2 dpkg-dev_1.21.22 g++-12_12.3.0-4 gcc-12_12.3.0-4 libc6-dev_2.36-9 libstdc++-12-dev_12.3.0-4 libstdc++-12-dev-amd64-cross_12.3.0-4cross1 libstdc++6_13.1.0-6 libstdc++6-amd64-cross_13.1.0-6cross1 linux-libc-dev_6.3.7-1 Package versions: adduser_3.134 apt_2.6.1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.1 bash_5.2.15-2+b2 binutils_2.40.50.20230611-2 binutils-aarch64-linux-gnu_2.40.50.20230611-2 binutils-common_2.40.50.20230611-2 binutils-x86-64-linux-gnu_2.40.50.20230611-2 bsdextrautils_2.38.1-5+b1 bsdutils_1:2.38.1-5+b1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-12_12.3.0-4 cpp-12-x86-64-linux-gnu_12.3.0-4cross1 cpp-x86-64-linux-gnu_4:12.2.0-3 cross-config_2.6.20 crossbuild-essential-amd64_12.9 dash_0.5.12-5 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diamond-aligner_2.1.3-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3 g++-12_12.3.0-4 g++-12-x86-64-linux-gnu_12.3.0-4cross1 g++-x86-64-linux-gnu_4:12.2.0-3 gcc_4:12.2.0-3 gcc-12_12.3.0-4 gcc-12-base_12.3.0-4 gcc-12-cross-base_12.3.0-4cross1 gcc-12-x86-64-linux-gnu_12.3.0-4cross1 gcc-12-x86-64-linux-gnu-base_12.3.0-4cross1 gcc-13-base_13.1.0-6 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libdebconfclient0_0.270 libdebhelper-perl_13.11.4 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.21.22 libelf1_0.188-2.1 libexpat1_2.5.0-2 libfakeroot_1.31-1.2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-12-dev_12.3.0-4 libgcc-12-dev-amd64-cross_12.3.0-4cross1 libgcc-s1_13.1.0-6 libgcc-s1-amd64-cross_13.1.0-6cross1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_13.1.0-6 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-2 libgomp1_13.1.0-6 libgomp1-amd64-cross_13.1.0-6cross1 libgpg-error0_1.46-1 libgprofng0_2.40.50.20230611-2 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.8.1-2 libhwasan0_13.1.0-6 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-4 libisl23_0.26-3 libitm1_13.1.0-6 libitm1-amd64-cross_13.1.0-6cross1 libjansson4_2.14-2 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 liblmdb0_0.9.24-1 liblocale-gettext-perl_1.07-5 liblsan0_13.1.0-6 liblsan0-amd64-cross_13.1.0-6cross1 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmbedcrypto7_2.28.3-1 libmbedtls14_2.28.3-1 libmbedx509-1_2.28.3-1 libmd0_1.1.0-1 libmount1_2.38.1-5+b1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4-4 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libproc2-0_2:4.0.3-1 libpython3-stdlib_3.11.2-1+b1 libpython3.11-minimal_3.11.4-1 libpython3.11-stdlib_3.11.4-1 libquadmath0_13.1.0-6 libquadmath0-amd64-cross_13.1.0-6cross1 libreadline8_8.2-1.3 libseccomp2_2.5.4-1+b3 libselinux1_3.4-1+b6 libsemanage-common_3.4-1 libsemanage2_3.4-1+b5 libsepol2_3.4-2.1 libsmartcols1_2.38.1-5+b1 libsqlite3-0_3.40.1-2 libssl3_3.0.9-1 libstdc++-12-dev_12.3.0-4 libstdc++-12-dev-amd64-cross_12.3.0-4cross1 libstdc++6_13.1.0-6 libstdc++6-amd64-cross_13.1.0-6cross1 libsub-override-perl_0.09-4 libsystemd0_253-3 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-4 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan2_13.1.0-6 libtsan2-amd64-cross_13.1.0-6cross1 libubsan1_13.1.0-6 libubsan1-amd64-cross_13.1.0-6cross1 libuchardet0_0.0.7-1 libudev1_253-3 libunistring2_1.0-2 libuuid1_2.38.1-5+b1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.3.7-1 linux-libc-dev-amd64-cross_6.1.4-1cross1 login_1:4.13+dfsg1-1+b1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20230525-1 media-types_10.0.0 ncbi-blast+_2.12.0+ds-3+b1 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4-4 ncurses-bin_6.4-4 passwd_1:4.13+dfsg1-1+b1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 po-debconf_1.0.21+nmu1 procps_2:4.0.3-1 python3_3.11.2-1+b1 python3-minimal_3.11.2-1+b1 python3.11_3.11.4-1 python3.11-minimal_3.11.4-1 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.06-4 tar_1.34+dfsg-1.2 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.38.1-5+b1 util-linux-extra_2.38.1-5+b1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: proteinortho Binary: proteinortho Architecture: any Version: 6.2.3+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/proteinortho Vcs-Git: https://salsa.debian.org/med-team/proteinortho.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper Package-List: proteinortho deb science optional arch=any Checksums-Sha1: fea56b906f82df0389c83076bfd71ef5ba564954 363948 proteinortho_6.2.3+dfsg.orig.tar.xz d3cad248602afb8c18f95f1522e45865e1c42a4d 7036 proteinortho_6.2.3+dfsg-1.debian.tar.xz Checksums-Sha256: 3f685492da93e207ec9b09d784e2643c650ee22c14a20b6eff08b23d6c87e973 363948 proteinortho_6.2.3+dfsg.orig.tar.xz a0cbbd9c30ee2ee29fbed1e6a5e32ebc68ac215fa4b746af3679be5e930d8783 7036 proteinortho_6.2.3+dfsg-1.debian.tar.xz Files: 71061eaa9576a7914627838e0d082864 363948 proteinortho_6.2.3+dfsg.orig.tar.xz e9b7fd2d032f3f9cc28cbe9695d2778c 7036 proteinortho_6.2.3+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZIdXaAAKCRAqJ5BL1yQ+ 2gkCAQCTkXhZ/mkWFH+pOD8jCw0NX24VUcAr/yQGBG5UHsmsLAEApu0EIJ1y4QCr 7S8eGMfFGx4S8rlGlPXYrf64D70G5w8= =JlXl -----END PGP SIGNATURE----- gpgv: Signature made Mon Jun 12 17:35:36 2023 UTC gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./proteinortho_6.2.3+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting proteinortho in /<> dpkg-source: info: unpacking proteinortho_6.2.3+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_6.2.3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_diamond Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.2.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -rf src/BUILD test/C*.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc make[1]: Entering directory '/<>' CC = x86_64-linux-gnu-gcc CCFLAGS = CXX = x86_64-linux-gnu-g++ CXXFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security MTUNEARCHFLAGS = LDFLAGS = -Wl,-z,relro -Wl,-z,now LDLIBS = STATIC = FALSE Creating build directory ... [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) x86_64-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_aarch64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /bin/sh: 1: src/BUILD/Linux_aarch64/proteinortho_clustering: Exec format error ......dynamic linking failed too, now I try dynamic linking without -WL,-whole-archive (this should now work for OSX). x86_64-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_aarch64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -lpthread /bin/sh: 3: src/BUILD/Linux_aarch64/proteinortho_clustering: Exec format error ......dynamic linking failed (without -WL,-whole-archive) too too, now I try to openblas. x86_64-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_aarch64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -lopenblas -pthread -lpthread /usr/lib/gcc-cross/x86_64-linux-gnu/12/../../../../x86_64-linux-gnu/bin/ld: cannot find -lopenblas: No such file or directory collect2: error: ld returned 1 exit status ......last linking failed too too too, now I try to recompile lapack (v.3.8.0) and then compile proteinortho_clustering with dynamic linking. ......[ 33%] Extracting the LAPACK library cd src; tar -xzvf lapack-3.8.0.tar.gz ......[ 66%] Compiling the LAPACK library (using cmake + make) mkdir src/lapack-3.8.0/build; cd src/lapack-3.8.0/build; cmake .. -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g++ > /dev/null; make all -j4 /bin/sh: 10: cd: can't cd to src/lapack-3.8.0/build /bin/sh: 10: cmake: not found E: Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 2023-06-20T23:43:52Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 3180 Build-Time: 9247 Distribution: unstable Fail-Stage: build Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 62 Job: proteinortho_6.2.3+dfsg-1 Machine Architecture: arm64 Package: proteinortho Package-Time: 9353 Source-Version: 6.2.3+dfsg-1 Space: 3180 Status: attempted Version: 6.2.3+dfsg-1 -------------------------------------------------------------------------------- Finished at 2023-06-20T23:43:52Z Build needed 02:35:53, 3180k disk space