sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | proteinortho 6.2.3+dfsg-1 (ppc64el) Tue, 05 Dec 2023 22:07:47 +0000 | +==============================================================================+ Package: proteinortho Version: 6.2.3+dfsg-1 Source Version: 6.2.3+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-d53d3338-ed44-422c-a343-10cc27aa830d' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-dv20RK/resolver-wlNUlf' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-12-05-2004.13-F-2023-12-05-0206.02.pdiff [36.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-12-05-2004.13-F-2023-12-05-0206.02.pdiff [65.5 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-12-05-2004.13-F-2023-12-05-0206.02.pdiff [36.3 kB] Get:6 http://localhost:3142/debian sid/main ppc64el Packages [9424 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-12-05-2004.13-F-2023-12-05-0206.02.pdiff [65.5 kB] Fetched 9851 kB in 3s (3718 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libmount1 libsemanage2 libsmartcols1 libuuid1 mount util-linux util-linux-extra 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2208 kB of archives. After this operation, 10.2 kB of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 bsdutils amd64 1:2.39.3-2 [96.7 kB] Get:2 http://localhost:3142/debian sid/main amd64 libsmartcols1 amd64 2.39.3-2 [116 kB] Get:3 http://localhost:3142/debian sid/main amd64 util-linux-extra amd64 2.39.3-2 [155 kB] Get:4 http://localhost:3142/debian sid/main amd64 util-linux amd64 2.39.3-2 [1229 kB] Get:5 http://localhost:3142/debian sid/main amd64 mount amd64 2.39.3-2 [143 kB] Get:6 http://localhost:3142/debian sid/main amd64 libblkid1 amd64 2.39.3-2 [159 kB] Get:7 http://localhost:3142/debian sid/main amd64 libmount1 amd64 2.39.3-2 [190 kB] Get:8 http://localhost:3142/debian sid/main amd64 libsemanage2 amd64 3.5-1+b1 [90.3 kB] Get:9 http://localhost:3142/debian sid/main amd64 libuuid1 amd64 2.39.3-2 [29.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2208 kB in 0s (116 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proteinortho.git Please use: git clone https://salsa.debian.org/med-team/proteinortho.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 373 kB of source archives. Get:1 http://localhost:3142/debian sid/main proteinortho 6.2.3+dfsg-1 (dsc) [1531 B] Get:2 http://localhost:3142/debian sid/main proteinortho 6.2.3+dfsg-1 (tar) [364 kB] Get:3 http://localhost:3142/debian sid/main proteinortho 6.2.3+dfsg-1 (diff) [7036 B] Fetched 373 kB in 1s (310 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/proteinortho-dv20RK/proteinortho-6.2.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-dv20RK' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [832 B] Get:5 copy:/<>/apt_archive ./ Packages [842 B] Fetched 2283 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-13-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:ppc64el dpkg-cross dwz file g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-13-base:ppc64el gcc-13-cross-base gcc-13-powerpc64le-linux-gnu gcc-13-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:ppc64el libasan8-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblas-dev:ppc64el libblas3:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:ppc64el libgcc-13-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libicu72 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblapack-dev:ppc64el liblapack3:ppc64el liblmdb0 liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl-dev:ppc64el libnsl2:ppc64el libpipeline1 libproc2-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8 libsqlite3-0 libssl3:ppc64el libstdc++-11-dev:ppc64el libstdc++-13-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types ncbi-blast+ ncbi-data netbase po-debconf procps python3 python3-minimal python3.11 python3.11-minimal readline-common sensible-utils ucf zlib1g:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:ppc64el glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el manpages-dev:ppc64el krb5-doc:ppc64el krb5-user:ppc64el libstdc++-11-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support readline-doc Recommended packages: med-config:ppc64el curl | wget | lynx libidn2-0:ppc64el libarchive-cpio-perl krb5-locales:ppc64el libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-13-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:ppc64el dpkg-cross dwz file g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-11-base:ppc64el gcc-13-base:ppc64el gcc-13-cross-base gcc-13-powerpc64le-linux-gnu gcc-13-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:ppc64el libasan8-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblas-dev:ppc64el libblas3:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:ppc64el libgcc-13-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el libicu72 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblapack-dev:ppc64el liblapack3:ppc64el liblmdb0 liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl-dev:ppc64el libnsl2:ppc64el libpipeline1 libproc2-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8 libsqlite3-0 libssl3:ppc64el libstdc++-11-dev:ppc64el libstdc++-13-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtirpc-dev:ppc64el libtirpc3:ppc64el libtool libtsan0:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types ncbi-blast+ ncbi-data netbase po-debconf procps python3 python3-minimal python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf zlib1g:ppc64el 0 upgraded, 131 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [968 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6 [15.3 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.7-1 [816 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 python3.11-minimal amd64 3.11.7-1 [2037 kB] Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:7 http://localhost:3142/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4+20231121-1 [135 kB] Get:10 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:11 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:12 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amd64 gettext-base amd64 0.21-14 [161 kB] Get:24 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:25 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:26 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-2 [89.1 kB] Get:27 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:28 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-1 [1402 kB] Get:29 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:30 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:31 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:32 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:33 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:34 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:35 http://localhost:3142/debian sid/main amd64 binutils-powerpc64le-linux-gnu amd64 2.41.50.20231202-1 [2783 kB] Get:36 http://localhost:3142/debian sid/main amd64 gcc-13-powerpc64le-linux-gnu-base amd64 13.2.0-7cross2 [41.0 kB] Get:37 http://localhost:3142/debian sid/main amd64 cpp-13-powerpc64le-linux-gnu amd64 13.2.0-7cross2 [9192 kB] Get:38 http://localhost:3142/debian sid/main amd64 cpp-powerpc64le-linux-gnu amd64 4:13.2.0-2 [4176 B] Get:39 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:40 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:41 http://localhost:3142/debian sid/main amd64 libc6-ppc64el-cross all 2.37-12cross1 [1352 kB] Get:42 http://localhost:3142/debian sid/main amd64 libgcc-s1-ppc64el-cross all 13.2.0-7cross2 [35.0 kB] Get:43 http://localhost:3142/debian sid/main amd64 libgomp1-ppc64el-cross all 13.2.0-7cross2 [134 kB] Get:44 http://localhost:3142/debian sid/main amd64 libitm1-ppc64el-cross all 13.2.0-7cross2 [28.3 kB] Get:45 http://localhost:3142/debian sid/main amd64 libatomic1-ppc64el-cross all 13.2.0-7cross2 [9496 B] Get:46 http://localhost:3142/debian sid/main amd64 libasan8-ppc64el-cross all 13.2.0-7cross2 [2516 kB] Get:47 http://localhost:3142/debian sid/main amd64 liblsan0-ppc64el-cross all 13.2.0-7cross2 [1113 kB] Get:48 http://localhost:3142/debian sid/main amd64 libtsan2-ppc64el-cross all 13.2.0-7cross2 [2353 kB] Get:49 http://localhost:3142/debian sid/main amd64 libstdc++6-ppc64el-cross all 13.2.0-7cross2 [727 kB] Get:50 http://localhost:3142/debian sid/main amd64 libubsan1-ppc64el-cross all 13.2.0-7cross2 [1022 kB] Get:51 http://localhost:3142/debian sid/main amd64 libquadmath0-ppc64el-cross all 13.2.0-7cross2 [150 kB] Get:52 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-ppc64el-cross all 13.2.0-7cross2 [1372 kB] Get:53 http://localhost:3142/debian sid/main amd64 gcc-13-powerpc64le-linux-gnu amd64 13.2.0-7cross2 [18.1 MB] Get:54 http://localhost:3142/debian sid/main amd64 gcc-powerpc64le-linux-gnu amd64 4:13.2.0-2 [1484 B] Get:55 http://localhost:3142/debian sid/main amd64 linux-libc-dev-ppc64el-cross all 6.5.8-1cross1 [2004 kB] Get:56 http://localhost:3142/debian sid/main amd64 libc6-dev-ppc64el-cross all 2.37-12cross1 [1811 kB] Get:57 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-ppc64el-cross all 13.2.0-7cross2 [2292 kB] Get:58 http://localhost:3142/debian sid/main amd64 g++-13-powerpc64le-linux-gnu amd64 13.2.0-7cross2 [10.2 MB] Get:59 http://localhost:3142/debian sid/main amd64 g++-powerpc64le-linux-gnu amd64 4:13.2.0-2 [1184 B] Get:60 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:61 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:62 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:63 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b1 [692 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:68 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:69 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:70 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:71 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:73 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:74 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:75 http://localhost:3142/debian sid/main amd64 crossbuild-essential-ppc64el all 12.10 [3492 B] Get:76 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.8 [82.1 kB] Get:77 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:78 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:79 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:80 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:81 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:82 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:83 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1 [176 kB] Get:84 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:85 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:86 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:88 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.8 [956 kB] Get:89 http://localhost:3142/debian sid/main ppc64el gcc-13-base ppc64el 13.2.0-8 [41.1 kB] Get:90 http://localhost:3142/debian sid/main ppc64el libgcc-s1 ppc64el 13.2.0-8 [35.0 kB] Get:91 http://localhost:3142/debian sid/main ppc64el libc6 ppc64el 2.37-13 [2681 kB] Get:92 http://localhost:3142/debian sid/main ppc64el libstdc++6 ppc64el 13.2.0-8 [777 kB] Get:93 http://localhost:3142/debian sid/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3 [86.0 kB] Get:94 http://localhost:3142/debian sid/main ppc64el diamond-aligner ppc64el 2.1.8-2 [1900 kB] Get:95 http://localhost:3142/debian sid/main ppc64el gcc-11-base ppc64el 11.4.0-6 [40.2 kB] Get:96 http://localhost:3142/debian sid/main ppc64el libasan6 ppc64el 11.4.0-6 [2036 kB] Get:97 http://localhost:3142/debian sid/main ppc64el libatomic1 ppc64el 13.2.0-8 [9748 B] Get:98 http://localhost:3142/debian sid/main ppc64el libblas3 ppc64el 3.11.0-2 [113 kB] Get:99 http://localhost:3142/debian sid/main ppc64el libblas-dev ppc64el 3.11.0-2 [121 kB] Get:100 http://localhost:3142/debian sid/main ppc64el linux-libc-dev ppc64el 6.5.13-1 [2028 kB] Get:101 http://localhost:3142/debian sid/main ppc64el libcrypt1 ppc64el 1:4.4.36-2 [98.0 kB] Get:102 http://localhost:3142/debian sid/main ppc64el libcrypt-dev ppc64el 1:4.4.36-2 [132 kB] Get:103 http://localhost:3142/debian sid/main ppc64el libkrb5support0 ppc64el 1.20.1-5 [36.2 kB] Get:104 http://localhost:3142/debian sid/main ppc64el libcom-err2 ppc64el 1.47.0-2+b1 [20.5 kB] Get:105 http://localhost:3142/debian sid/main ppc64el libk5crypto3 ppc64el 1.20.1-5 [89.8 kB] Get:106 http://localhost:3142/debian sid/main ppc64el libkeyutils1 ppc64el 1.6.3-2 [10.0 kB] Get:107 http://localhost:3142/debian sid/main ppc64el libssl3 ppc64el 3.1.4-2 [2043 kB] Get:108 http://localhost:3142/debian sid/main ppc64el libkrb5-3 ppc64el 1.20.1-5 [364 kB] Get:109 http://localhost:3142/debian sid/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-5 [149 kB] Get:110 http://localhost:3142/debian sid/main ppc64el libtirpc3 ppc64el 1.3.4+ds-1 [93.3 kB] Get:111 http://localhost:3142/debian sid/main ppc64el libnsl2 ppc64el 1.3.0-3 [44.3 kB] Get:112 http://localhost:3142/debian sid/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1 [206 kB] Get:113 http://localhost:3142/debian sid/main ppc64el libnsl-dev ppc64el 1.3.0-3 [72.7 kB] Get:114 http://localhost:3142/debian sid/main ppc64el libc6-dev ppc64el 2.37-13 [1817 kB] Get:115 http://localhost:3142/debian sid/main ppc64el libgomp1 ppc64el 13.2.0-8 [137 kB] Get:116 http://localhost:3142/debian sid/main ppc64el libitm1 ppc64el 13.2.0-8 [28.8 kB] Get:117 http://localhost:3142/debian sid/main ppc64el liblsan0 ppc64el 13.2.0-8 [1114 kB] Get:118 http://localhost:3142/debian sid/main ppc64el libtsan0 ppc64el 11.4.0-6 [2022 kB] Get:119 http://localhost:3142/debian sid/main ppc64el libubsan1 ppc64el 13.2.0-8 [1023 kB] Get:120 http://localhost:3142/debian sid/main ppc64el libquadmath0 ppc64el 13.2.0-8 [149 kB] Get:121 http://localhost:3142/debian sid/main ppc64el libgcc-11-dev ppc64el 11.4.0-6 [1269 kB] Get:122 http://localhost:3142/debian sid/main ppc64el libgfortran5 ppc64el 13.2.0-8 [503 kB] Get:123 http://localhost:3142/debian sid/main ppc64el liblapack3 ppc64el 3.11.0-2 [1840 kB] Get:124 http://localhost:3142/debian sid/main ppc64el liblapack-dev ppc64el 3.11.0-2 [3756 kB] Get:125 http://localhost:3142/debian sid/main amd64 liblmdb0 amd64 0.9.31-1 [44.3 kB] Get:126 http://localhost:3142/debian sid/main amd64 libmbedcrypto7 amd64 2.28.5-1 [279 kB] Get:127 http://localhost:3142/debian sid/main amd64 libmbedx509-1 amd64 2.28.5-1 [129 kB] Get:128 http://localhost:3142/debian sid/main amd64 libmbedtls14 amd64 2.28.5-1 [165 kB] Get:129 http://localhost:3142/debian sid/main ppc64el libstdc++-11-dev ppc64el 11.4.0-6 [2071 kB] Get:130 http://localhost:3142/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:131 http://localhost:3142/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-4 [12.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 130 MB in 1s (178 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14620 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.7-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.7-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-2_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-1_amd64.deb ... Unpacking python3.11-minimal (3.11.7-1) ... Setting up libpython3.11-minimal:amd64 (3.11.7-1) ... Setting up libexpat1:amd64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14950 files and directories currently installed.) 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Setting up libicu72:amd64 (72.1-4) ... Setting up bsdextrautils (2.39.3-2) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libc6-ppc64el-cross (2.37-12cross1) ... Setting up libdebhelper-perl (13.11.8) ... Setting up libsqlite3-0:amd64 (3.44.2-1) ... Setting up libmagic1:amd64 (1:5.45-2) ... Setting up linux-libc-dev:ppc64el (6.5.13-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2) ... Setting up gcc-13-powerpc64le-linux-gnu-base:amd64 (13.2.0-7cross2) ... Setting up libyaml-perl (1.30-2) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:ppc64el (13.2.0-8) ... Setting up libmbedcrypto7:amd64 (2.28.5-1) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up libproc2-0:amd64 (2:4.0.4-2) ... Setting up autopoint (0.21-14) ... Setting up libncursesw6:amd64 (6.4+20231121-1) ... Setting up autoconf (2.71-3) ... Setting up libitm1-ppc64el-cross (13.2.0-7cross2) ... Setting up libatomic1-ppc64el-cross (13.2.0-7cross2) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up linux-libc-dev-ppc64el-cross (6.5.8-1cross1) ... Setting up procps (2:4.0.4-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up netbase (6.4) ... Setting up libgcc-s1-ppc64el-cross (13.2.0-7cross2) ... Setting up binutils-powerpc64le-linux-gnu (2.41.50.20231202-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-7cross2) ... Setting up libelf1:amd64 (0.190-1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b1) ... Setting up liblocale-gettext-perl (1.07-6) ... Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up libc6-dev-ppc64el-cross (2.37-12cross1) ... Setting up libmbedx509-1:amd64 (2.28.5-1) ... Setting up libmbedtls14:amd64 (2.28.5-1) ... Setting up libtool (2.4.7-7) ... Setting up libquadmath0-ppc64el-cross (13.2.0-7cross2) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up libasan8-ppc64el-cross (13.2.0-7cross2) ... Setting up libgomp1-ppc64el-cross (13.2.0-7cross2) ... Setting up liblsan0-ppc64el-cross (13.2.0-7cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libtsan2-ppc64el-cross (13.2.0-7cross2) ... Setting up dh-autoreconf (20) ... Setting up ucf (3.0043+nmu1) ... Setting up libstdc++6-ppc64el-cross (13.2.0-7cross2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libubsan1-ppc64el-cross (13.2.0-7cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.7-1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-ppc64el-cross (13.2.0-7cross2) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.7-1) ... Setting up libstdc++-13-dev-ppc64el-cross (13.2.0-7cross2) ... Setting up debhelper (13.11.8) ... Setting up python3 (3.11.6-1) ... Setting up ncbi-blast+ (2.12.0+ds-4) ... Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-13-powerpc64le-linux-gnu (13.2.0-7cross2) ... Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up g++-powerpc64le-linux-gnu (4:13.2.0-2) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-ppc64el (12.10) ... Setting up libgcc-s1:ppc64el (13.2.0-8) ... Setting up libc6:ppc64el (2.37-13) ... Setting up libstdc++6:ppc64el (13.2.0-8) ... Setting up liblsan0:ppc64el (13.2.0-8) ... Setting up libitm1:ppc64el (13.2.0-8) ... Setting up libtsan0:ppc64el (11.4.0-6) ... Setting up libkeyutils1:ppc64el (1.6.3-2) ... Setting up libssl3:ppc64el (3.1.4-2) ... Setting up zlib1g:ppc64el (1:1.3.dfsg-3) ... Setting up libcrypt1:ppc64el (1:4.4.36-2) ... Setting up libcom-err2:ppc64el (1.47.0-2+b1) ... Setting up libgomp1:ppc64el (13.2.0-8) ... Setting up diamond-aligner:ppc64el (2.1.8-2) ... Setting up libasan6:ppc64el (11.4.0-6) ... Setting up libkrb5support0:ppc64el (1.20.1-5) ... Setting up libblas3:ppc64el (3.11.0-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libquadmath0:ppc64el (13.2.0-8) ... Setting up libatomic1:ppc64el (13.2.0-8) ... Setting up libk5crypto3:ppc64el (1.20.1-5) ... Setting up libgfortran5:ppc64el (13.2.0-8) ... Setting up libubsan1:ppc64el (13.2.0-8) ... Setting up libgcc-11-dev:ppc64el (11.4.0-6) ... Setting up libcrypt-dev:ppc64el (1:4.4.36-2) ... Setting up libkrb5-3:ppc64el (1.20.1-5) ... Setting up libblas-dev:ppc64el (3.11.0-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up liblapack3:ppc64el (3.11.0-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up liblapack-dev:ppc64el (3.11.0-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up libgssapi-krb5-2:ppc64el (1.20.1-5) ... Setting up libtirpc3:ppc64el (1.3.4+ds-1) ... Setting up libtirpc-dev:ppc64el (1.3.4+ds-1) ... Setting up libnsl2:ppc64el (1.3.0-3) ... Setting up libnsl-dev:ppc64el (1.3.0-3) ... Setting up libc6-dev:ppc64el (2.37-13) ... Setting up libstdc++-11-dev:ppc64el (11.4.0-6) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231202-1 dpkg-dev_1.22.1 g++-11_11.4.0-6 g++-13_13.2.0-8 gcc-11_11.4.0-6 gcc-13_13.2.0-8 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-6 libstdc++-13-dev_13.2.0-8 libstdc++-13-dev-ppc64el-cross_13.2.0-7cross2 libstdc++6_13.2.0-8 libstdc++6-ppc64el-cross_13.2.0-7cross2 linux-libc-dev_6.5.13-1 Package versions: adduser_3.137 apt_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.50.20231202-1 binutils-common_2.41.50.20231202-1 binutils-powerpc64le-linux-gnu_2.41.50.20231202-1 binutils-x86-64-linux-gnu_2.41.50.20231202-1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.4-2+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-6 cpp-13_13.2.0-8 cpp-13-powerpc64le-linux-gnu_13.2.0-7cross2 cpp-powerpc64le-linux-gnu_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-ppc64el_12.10 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.8 debian-archive-keyring_2023.4 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diamond-aligner_2.1.8-2 diffutils_1:3.10-1 dpkg_1.22.1 dpkg-cross_2.6.20 dpkg-dev_1.22.1 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-6 g++-13_13.2.0-8 g++-13-powerpc64le-linux-gnu_13.2.0-7cross2 g++-powerpc64le-linux-gnu_4:13.2.0-2 gcc_4:13.2.0-2 gcc-11_11.4.0-6 gcc-11-base_11.4.0-6 gcc-12-base_12.3.0-12 gcc-13_13.2.0-8 gcc-13-base_13.2.0-8 gcc-13-cross-base_13.2.0-7cross2 gcc-13-powerpc64le-linux-gnu_13.2.0-7cross2 gcc-13-powerpc64le-linux-gnu-base_13.2.0-7cross2 gcc-9-base_9.5.0-4 gcc-powerpc64le-linux-gnu_4:13.2.0-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libasan6_11.4.0-6 libasan8_13.2.0-8 libasan8-ppc64el-cross_13.2.0-7cross2 libatomic1_13.2.0-8 libatomic1-ppc64el-cross_13.2.0-7cross2 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1+b1 libbinutils_2.41.50.20231202-1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.3-2 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-dev_2.37-13 libc6-dev-ppc64el-cross_2.37-12cross1 libc6-ppc64el-cross_2.37-12cross1 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcc1-0_13.2.0-8 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41.50.20231202-1 libctf0_2.41.50.20231202-1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.1 libelf1_0.190-1 libexpat1_2.5.0-2 libext2fs2_1.47.0-2+b1 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-6 libgcc-13-dev_13.2.0-8 libgcc-13-dev-ppc64el-cross_13.2.0-7cross2 libgcc-s1_13.2.0-8 libgcc-s1-ppc64el-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran5_13.2.0-8 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-8 libgomp1-ppc64el-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.50.20231202-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhwasan0_13.2.0-8 libicu72_72.1-4 libidn2-0_2.3.4-1+b1 libio-string-perl_1.08-4 libisl23_0.26-3 libitm1_13.2.0-8 libitm1-ppc64el-cross_13.2.0-7cross2 libjansson4_2.14-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 liblmdb0_0.9.31-1 liblocale-gettext-perl_1.07-6 liblsan0_13.2.0-8 liblsan0-ppc64el-cross_13.2.0-7cross2 liblz4-1_1.9.4-1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmbedcrypto7_2.28.5-1 libmbedtls14_2.28.5-1 libmbedx509-1_2.28.5-1 libmd0_1.1.0-1 libmount1_2.39.3-2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231121-1 libnettle8_3.9.1-2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-2 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libproc2-0_2:4.0.4-2 libpython3-stdlib_3.11.6-1 libpython3.11-minimal_3.11.7-1 libpython3.11-stdlib_3.11.7-1 libquadmath0_13.2.0-8 libquadmath0-ppc64el-cross_13.2.0-7cross2 libreadline8_8.2-3 libseccomp2_2.5.4-2+b1 libselinux1_3.5-1+b1 libsemanage-common_3.5-1 libsemanage2_3.5-1+b1 libsepol2_3.5-2 libsframe1_2.41.50.20231202-1 libsmartcols1_2.39.3-2 libsqlite3-0_3.44.2-1 libss2_1.47.0-2+b1 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-6 libstdc++-13-dev_13.2.0-8 libstdc++-13-dev-ppc64el-cross_13.2.0-7cross2 libstdc++6_13.2.0-8 libstdc++6-ppc64el-cross_13.2.0-7cross2 libsub-override-perl_0.09-4 libsystemd0_255~rc4-2 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231121-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-6 libtsan2_13.2.0-8 libtsan2-ppc64el-cross_13.2.0-7cross2 libubsan1_13.2.0-8 libubsan1-ppc64el-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255~rc4-2 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-2 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b1 libxxhash0_0.8.2-2 libyaml-perl_1.30-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.13-1 linux-libc-dev-ppc64el-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.3-2 ncbi-blast+_2.12.0+ds-4 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4+20231121-1 ncurses-bin_6.4+20231121-1 netbase_6.4 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-10 po-debconf_1.0.21+nmu1 procps_2:4.0.4-2 python3_3.11.6-1 python3-minimal_3.11.6-1 python3.11_3.11.7-1 python3.11-minimal_3.11.7-1 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-11 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-2 util-linux-extra_2.39.3-2 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: proteinortho Binary: proteinortho Architecture: any Version: 6.2.3+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/proteinortho Vcs-Git: https://salsa.debian.org/med-team/proteinortho.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper Package-List: proteinortho deb science optional arch=any Checksums-Sha1: fea56b906f82df0389c83076bfd71ef5ba564954 363948 proteinortho_6.2.3+dfsg.orig.tar.xz d3cad248602afb8c18f95f1522e45865e1c42a4d 7036 proteinortho_6.2.3+dfsg-1.debian.tar.xz Checksums-Sha256: 3f685492da93e207ec9b09d784e2643c650ee22c14a20b6eff08b23d6c87e973 363948 proteinortho_6.2.3+dfsg.orig.tar.xz a0cbbd9c30ee2ee29fbed1e6a5e32ebc68ac215fa4b746af3679be5e930d8783 7036 proteinortho_6.2.3+dfsg-1.debian.tar.xz Files: 71061eaa9576a7914627838e0d082864 363948 proteinortho_6.2.3+dfsg.orig.tar.xz e9b7fd2d032f3f9cc28cbe9695d2778c 7036 proteinortho_6.2.3+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZIdXaAAKCRAqJ5BL1yQ+ 2gkCAQCTkXhZ/mkWFH+pOD8jCw0NX24VUcAr/yQGBG5UHsmsLAEApu0EIJ1y4QCr 7S8eGMfFGx4S8rlGlPXYrf64D70G5w8= =JlXl -----END PGP SIGNATURE----- gpgv: Signature made Mon Jun 12 17:35:36 2023 UTC gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./proteinortho_6.2.3+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting proteinortho in /<> dpkg-source: info: unpacking proteinortho_6.2.3+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_6.2.3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_diamond Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.IMQ0mou2Yp/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-d53d3338-ed44-422c-a343-10cc27aa830d SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.2.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -rf src/BUILD test/C*.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=powerpc64le-linux-gnu-pkg-config CXX=powerpc64le-linux-gnu-g\+\+ CC=powerpc64le-linux-gnu-gcc make[1]: Entering directory '/<>' CC = powerpc64le-linux-gnu-gcc CCFLAGS = CXX = powerpc64le-linux-gnu-g++ CXXFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security MTUNEARCHFLAGS = LDFLAGS = -Wl,-z,relro -Wl,-z,now LDLIBS = STATIC = FALSE Creating build directory ... [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) powerpc64le-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /bin/sh: 1: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed too, now I try dynamic linking without -WL,-whole-archive (this should now work for OSX). powerpc64le-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -lpthread /bin/sh: 3: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed (without -WL,-whole-archive) too too, now I try to openblas. powerpc64le-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -lopenblas -pthread -lpthread /usr/lib/gcc-cross/powerpc64le-linux-gnu/13/../../../../powerpc64le-linux-gnu/bin/ld: cannot find -lopenblas: No such file or directory collect2: error: ld returned 1 exit status ......last linking failed too too too, now I try to recompile lapack (v.3.8.0) and then compile proteinortho_clustering with dynamic linking. ......[ 33%] Extracting the LAPACK library cd src; tar -xzvf lapack-3.8.0.tar.gz ......[ 66%] Compiling the LAPACK library (using cmake + make) mkdir src/lapack-3.8.0/build; cd src/lapack-3.8.0/build; cmake .. -DCMAKE_CXX_COMPILER=powerpc64le-linux-gnu-g++ > /dev/null; make all -j4 /bin/sh: 10: cd: can't cd to src/lapack-3.8.0/build /bin/sh: 10: cmake: not found E: Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 2023-12-06T00:39:14Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3196 Build-Time: 9057 Distribution: unstable Fail-Stage: build Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 17 Job: proteinortho_6.2.3+dfsg-1 Machine Architecture: amd64 Package: proteinortho Package-Time: 9087 Source-Version: 6.2.3+dfsg-1 Space: 3196 Status: attempted Version: 6.2.3+dfsg-1 -------------------------------------------------------------------------------- Finished at 2023-12-06T00:39:14Z Build needed 02:31:27, 3196k disk space