sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on mjolnir.einval.org +==============================================================================+ | proteinortho 6.3.1+dfsg-1 (amd64) Thu, 26 Feb 2026 01:53:10 +0000 | +==============================================================================+ Package: proteinortho Version: 6.3.1+dfsg-1 Source Version: 6.3.1+dfsg-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.cnY5I7oLsT... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Thu, 26 Feb 2026 01:53:26 +0000 | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [187 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [11.3 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [10.1 MB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [10.2 MB] Fetched 31.8 MB in 7s (4343 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-15 cpp-15-aarch64-linux-gnu g++-15 g++-15-aarch64-linux-gnu gcc-15 gcc-15-aarch64-linux-gnu gcc-15-base libasan8 libatomic1 libcc1-0 libgcc-15-dev libgcc-s1 libgomp1 libhwasan0 libitm1 liblsan0 liblz4-1 libstdc++-15-dev libstdc++6 libsystemd0 libtsan2 libubsan1 libudev1 login.defs 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 56.5 MB of archives. After this operation, 270 kB disk space will be freed. Get:1 http://mirror.einval.org/debian unstable/main arm64 libcc1-0 arm64 15.2.0-14 [41.4 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libgomp1 arm64 15.2.0-14 [126 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libitm1 arm64 15.2.0-14 [24.2 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libatomic1 arm64 15.2.0-14 [9872 B] Get:5 http://mirror.einval.org/debian unstable/main arm64 libasan8 arm64 15.2.0-14 [2600 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 liblsan0 arm64 15.2.0-14 [1194 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libtsan2 arm64 15.2.0-14 [2399 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libubsan1 arm64 15.2.0-14 [1064 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libhwasan0 arm64 15.2.0-14 [1479 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 gcc-15-base arm64 15.2.0-14 [55.0 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libstdc++6 arm64 15.2.0-14 [648 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 gcc-15 arm64 15.2.0-14 [525 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 g++-15 arm64 15.2.0-14 [26.1 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-14 [11.1 MB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libstdc++-15-dev arm64 15.2.0-14 [2350 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libgcc-15-dev arm64 15.2.0-14 [2374 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-14 [19.6 MB] Get:18 http://mirror.einval.org/debian unstable/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-14 [10.1 MB] Get:19 http://mirror.einval.org/debian unstable/main arm64 cpp-15 arm64 15.2.0-14 [1280 B] Get:20 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1 arm64 15.2.0-14 [53.4 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 liblz4-1 arm64 1.10.0-8 [66.4 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libsystemd0 arm64 260~rc1-1 [404 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libudev1 arm64 260~rc1-1 [121 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 login.defs all 1:4.19.3-1 [211 kB] Fetched 56.5 MB in 1s (103 MB/s) (Reading database ... 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Setting up libhwasan0:arm64 (15.2.0-14) ... Setting up libasan8:arm64 (15.2.0-14) ... Setting up libtsan2:arm64 (15.2.0-14) ... Setting up libcc1-0:arm64 (15.2.0-14) ... Setting up liblsan0:arm64 (15.2.0-14) ... Setting up libitm1:arm64 (15.2.0-14) ... Setting up libgcc-15-dev:arm64 (15.2.0-14) ... Setting up libstdc++-15-dev:arm64 (15.2.0-14) ... Setting up gcc-15-aarch64-linux-gnu (15.2.0-14) ... Setting up gcc-15 (15.2.0-14) ... Setting up g++-15-aarch64-linux-gnu (15.2.0-14) ... Setting up g++-15 (15.2.0-14) ... Processing triggers for libc-bin (2.42-13) ... +------------------------------------------------------------------------------+ | Fetch source files Thu, 26 Feb 2026 01:53:53 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proteinortho.git Please use: git clone https://salsa.debian.org/med-team/proteinortho.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 385 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main proteinortho 6.3.1+dfsg-1 (dsc) [2161 B] Get:2 http://mirror.einval.org/debian unstable/main proteinortho 6.3.1+dfsg-1 (tar) [376 kB] Get:3 http://mirror.einval.org/debian unstable/main proteinortho 6.3.1+dfsg-1 (diff) [7248 B] Fetched 385 kB in 0s (1327 kB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 26 Feb 2026 01:53:55 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-amd64:arm64, apt-utils:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-amd64:arm64, apt-utils:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-cTO6AX/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-cTO6AX/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-cTO6AX/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-cTO6AX/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-cTO6AX/apt_archive ./ Sources [827 B] Get:5 copy:/build/reproducible-path/resolver-cTO6AX/apt_archive ./ Packages [835 B] Fetched 2271 B in 0s (106 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: armv8crc-support autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:amd64 dwz file g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-15-base:amd64 gcc-15-cross-base gcc-15-x86-64-linux-gnu gcc-15-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian isa-support libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libblas-dev:amd64 libblas3:amd64 libc-gconv-modules-extra:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libdebhelper-perl libelf1t64 libexpat1 libffi8 libfile-stripnondeterminism-perl libgcc-15-dev:amd64 libgcc-15-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libitm1:amd64 libitm1-amd64-cross liblapack-dev:amd64 liblapack3:amd64 liblmdb0 liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libpipeline1 libproc2-0 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8t64 libsqlite3-0 libstdc++-15-dev:amd64 libstdc++-15-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring5 libuv1t64 libxml2-16 linux-libc-dev-amd64-cross m4 man-db media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase po-debconf procps python3 python3-minimal python3.13 python3.13-minimal readline-common sensible-utils tzdata zlib1g:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff liblapack-doc:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libstdc++-15-doc:amd64 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binfmt-support readline-doc Recommended packages: med-config:amd64 curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults ca-certificates The following NEW packages will be installed: armv8crc-support autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:amd64 dwz file g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-15-base:amd64 gcc-15-cross-base gcc-15-x86-64-linux-gnu gcc-15-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian isa-support libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libblas-dev:amd64 libblas3:amd64 libc-gconv-modules-extra:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libdebhelper-perl libelf1t64 libexpat1 libffi8 libfile-stripnondeterminism-perl libgcc-15-dev:amd64 libgcc-15-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libitm1:amd64 libitm1-amd64-cross liblapack-dev:amd64 liblapack3:amd64 liblmdb0 liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libpipeline1 libproc2-0 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8t64 libsqlite3-0 libstdc++-15-dev:amd64 libstdc++-15-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring5 libuv1t64 libxml2-16 linux-libc-dev-amd64-cross m4 man-db media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase po-debconf procps python3 python3-minimal python3.13 python3.13-minimal readline-common sbuild-build-depends-main-dummy:amd64 sensible-utils tzdata zlib1g:amd64 0 upgraded, 110 newly installed, 0 to remove and 0 not upgraded. Need to get 138 MB of archives. After this operation, 599 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-cTO6AX/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 isa-support arm64 27+b1 [7644 B] Get:3 http://mirror.einval.org/debian unstable/main arm64 armv8crc-support arm64 27+b1 [3624 B] Get:4 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.7.4-1 [101 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.12-1 [860 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.12-1 [2070 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 python3-minimal arm64 3.13.9-3 [27.6 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 tzdata all 2025c-3 [263 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.5.2-3+b1 [23.3 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.6+20251231-1 [125 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.3-4 [74.8 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-4 [168 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-9 [854 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.12-1 [1908 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 python3.13 arm64 3.13.12-1 [776 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.9-3 [10.5 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 python3 arm64 3.13.9-3 [27.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9+b1 [62.4 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-9+b1 [871 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5+b1 [338 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5+b1 [103 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.46-5+b1 [44.0 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.23.2-1 [242 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2+b1 [69.1 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-10+b1 [1133 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.41.3-4 [98.1 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-2 [40.3 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.1-1+b1 [1455 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.21-1 [323 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.18.1-3 [878 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.23.2-1 [772 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 gcc-15-x86-64-linux-gnu-base arm64 15.2.0-13cross1 [55.0 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 cpp-15-x86-64-linux-gnu arm64 15.2.0-13cross1 [11.3 MB] Get:39 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:15.2.0-5 [5324 B] Get:40 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.46-2 [1534 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 gcc-15-cross-base all 15.2.0-13cross1 [50.4 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 15.2.0-13cross1 [71.6 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 15.2.0-13cross1 [132 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 15.2.0-13cross1 [25.9 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 15.2.0-13cross1 [9244 B] Get:46 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 15.2.0-13cross1 [2770 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 15.2.0-13cross1 [1248 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 15.2.0-13cross1 [2480 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.42-12cross1 [1577 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 15.2.0-13cross1 [689 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 15.2.0-13cross1 [1107 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 15.2.0-13cross1 [1533 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 15.2.0-13cross1 [145 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libgcc-15-dev-amd64-cross all 15.2.0-13cross1 [2706 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 gcc-15-x86-64-linux-gnu arm64 15.2.0-13cross1 [21.8 MB] Get:56 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:15.2.0-5 [1448 B] Get:57 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.18.12-1 [12.2 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.42-12cross1 [2010 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libstdc++-15-dev-amd64-cross all 15.2.0-13cross1 [2426 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 g++-15-x86-64-linux-gnu arm64 15.2.0-13cross1 [12.2 MB] Get:61 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:15.2.0-5 [1204 B] Get:62 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.12 [3552 B] Get:63 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.31 [75.7 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.5.4-9 [540 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 22 [12.2 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:69 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.16-2+b1 [100 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.3-2+b1 [459 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-2+b1 [591 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.23.2-1 [1613 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.22 [216 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.31 [932 kB] Get:77 http://mirror.einval.org/debian unstable/main amd64 gcc-15-base amd64 15.2.0-14 [55.0 kB] Get:78 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 15.2.0-14 [71.5 kB] Get:79 http://mirror.einval.org/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.42-13 [1123 kB] Get:80 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.42-13 [1814 kB] Get:81 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 15.2.0-14 [736 kB] Get:82 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-3 [89.0 kB] Get:83 http://mirror.einval.org/debian unstable/main amd64 diamond-aligner amd64 2.1.14-1 [2768 kB] Get:84 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 15.2.0-14 [2779 kB] Get:85 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 15.2.0-14 [9536 B] Get:86 http://mirror.einval.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7+b1 [209 kB] Get:87 http://mirror.einval.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7+b1 [222 kB] Get:88 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.42-13 [2016 kB] Get:89 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 15.2.0-14 [140 kB] Get:90 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 15.2.0-14 [26.5 kB] Get:91 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 15.2.0-14 [1249 kB] Get:92 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 15.2.0-14 [2491 kB] Get:93 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 15.2.0-14 [1108 kB] Get:94 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 15.2.0-14 [1538 kB] Get:95 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 15.2.0-14 [145 kB] Get:96 http://mirror.einval.org/debian unstable/main amd64 libgcc-15-dev amd64 15.2.0-14 [2718 kB] Get:97 http://mirror.einval.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-14 [862 kB] Get:98 http://mirror.einval.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7+b1 [2550 kB] Get:99 http://mirror.einval.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7+b1 [5228 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 liblmdb0 arm64 0.9.31-1+b3 [43.4 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libmbedcrypto16 arm64 3.6.5-0.1 [345 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libmbedx509-7 arm64 3.6.5-0.1 [151 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libmbedtls21 arm64 3.6.5-0.1 [230 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2+b1 [1083 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.68.0-2 [74.4 kB] Get:107 http://mirror.einval.org/debian unstable/main amd64 libstdc++-15-dev amd64 15.2.0-14 [2446 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2+b1 [149 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 ncbi-data all 6.1.20170106+dfsg2-7 [3540 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 ncbi-blast+ arm64 2.17.0+ds-6 [15.0 MB] Preconfiguring packages ... Fetched 138 MB in 2s (90.6 MB/s) Selecting previously unselected package isa-support:arm64. (Reading database ... 12104 files and directories currently installed.) Preparing to unpack .../isa-support_27+b1_arm64.deb ... Unpacking isa-support:arm64 (27+b1) ... Setting up isa-support:arm64 (27+b1) ... Selecting previously unselected package armv8crc-support. (Reading database ... 12112 files and directories currently installed.) Preparing to unpack .../armv8crc-support_27+b1_arm64.deb ... Unpacking armv8crc-support (27+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.4-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.12-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.12-1) ... Selecting previously unselected package python3.13-minimal. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../08-libsqlite3-0_3.46.1-9_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.46.1-9) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../09-libpython3.13-stdlib_3.13.12-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.12-1) ... 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Setting up gcc-x86-64-linux-gnu (4:15.2.0-5) ... Setting up g++-x86-64-linux-gnu (4:15.2.0-5) ... Setting up crossbuild-essential-amd64 (12.12) ... Setting up libgcc-s1:amd64 (15.2.0-14) ... Setting up libc6:amd64 (2.42-13) ... Setting up libhwasan0:amd64 (15.2.0-14) ... Setting up libasan8:amd64 (15.2.0-14) ... Setting up libc6-dev:amd64 (2.42-13) ... Setting up libtsan2:amd64 (15.2.0-14) ... Setting up libstdc++6:amd64 (15.2.0-14) ... Setting up liblsan0:amd64 (15.2.0-14) ... Setting up libitm1:amd64 (15.2.0-14) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-3) ... Setting up libgomp1:amd64 (15.2.0-14) ... Setting up diamond-aligner:amd64 (2.1.14-1) ... Setting up libblas3:amd64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libquadmath0:amd64 (15.2.0-14) ... Setting up libatomic1:amd64 (15.2.0-14) ... Setting up libgfortran5:amd64 (15.2.0-14) ... Setting up libubsan1:amd64 (15.2.0-14) ... Setting up libblas-dev:amd64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up liblapack3:amd64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libgcc-15-dev:amd64 (15.2.0-14) ... Setting up libstdc++-15-dev:amd64 (15.2.0-14) ... Setting up liblapack-dev:amd64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for base-files (14) ... Processing triggers for libc-bin (2.42-13) ... +------------------------------------------------------------------------------+ | Check architectures Thu, 26 Feb 2026 01:55:02 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Thu, 26 Feb 2026 01:55:03 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.57+deb13-arm64 #1 SMP Debian 6.12.57-1 (2025-11-05) arm64 (aarch64) Toolchain package versions: binutils_2.46-2 dpkg-dev_1.23.5 g++-15_15.2.0-14 gcc-15_15.2.0-14 libc6-dev_2.42-13 libstdc++-15-dev_15.2.0-14 libstdc++-15-dev-amd64-cross_15.2.0-13cross1 libstdc++6_15.2.0-14 libstdc++6-amd64-cross_15.2.0-13cross1 linux-libc-dev_6.18.12-1 Package versions: apt_3.1.16 apt-utils_3.1.16 armv8crc-support_27+b1 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8+b1 bash_5.3-2 binutils_2.46-2 binutils-aarch64-linux-gnu_2.46-2 binutils-common_2.46-2 binutils-x86-64-linux-gnu_2.46-2 bsdextrautils_2.41.3-4 build-essential_12.12 bzip2_1.0.8-6+b1 coreutils_9.7-3+b1 cpp_4:15.2.0-5 cpp-15_15.2.0-14 cpp-15-aarch64-linux-gnu_15.2.0-14 cpp-15-x86-64-linux-gnu_15.2.0-13cross1 cpp-aarch64-linux-gnu_4:15.2.0-5 cpp-x86-64-linux-gnu_4:15.2.0-5 crossbuild-essential-amd64_12.12 dash_0.5.12-12+b1 debconf_1.5.92 debhelper_13.31 debian-archive-keyring_2025.1 debianutils_5.23.2+b1 dh-autoreconf_22 dh-strip-nondeterminism_1.15.0-1 diamond-aligner_2.1.14-1 diffutils_1:3.12-1+b1 dpkg_1.23.5 dpkg-dev_1.23.5 dwz_0.16-2+b1 file_1:5.46-5+b1 findutils_4.10.0-3+b1 g++_4:15.2.0-5 g++-15_15.2.0-14 g++-15-aarch64-linux-gnu_15.2.0-14 g++-15-x86-64-linux-gnu_15.2.0-13cross1 g++-aarch64-linux-gnu_4:15.2.0-5 g++-x86-64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-15_15.2.0-14 gcc-15-aarch64-linux-gnu_15.2.0-14 gcc-15-base_15.2.0-14 gcc-15-cross-base_15.2.0-13cross1 gcc-15-x86-64-linux-gnu_15.2.0-13cross1 gcc-15-x86-64-linux-gnu-base_15.2.0-13cross1 gcc-aarch64-linux-gnu_4:15.2.0-5 gcc-x86-64-linux-gnu_4:15.2.0-5 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1+b1 groff-base_1.23.0-10+b1 gzip_1.13-1+b1 hostname_3.25+b1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 isa-support_27+b1 libacl1_2.3.2-3 libapt-pkg7.0_3.1.16 libarchive-zip-perl_1.68-1 libasan8_15.2.0-14 libasan8-amd64-cross_15.2.0-13cross1 libatomic1_15.2.0-14 libatomic1-amd64-cross_15.2.0-13cross1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-2 libblas-dev_3.12.1-7+b1 libblas3_3.12.1-7+b1 libblkid1_2.41.3-4 libbz2-1.0_1.0.8-6+b1 libc-bin_2.42-13 libc-dev-bin_2.42-13 libc-gconv-modules-extra_2.42-13 libc6_2.42-13 libc6-amd64-cross_2.42-12cross1 libc6-dev_2.42-13 libc6-dev-amd64-cross_2.42-12cross1 libcap-ng0_0.9.1-1 libcap2_1:2.75-10+b5 libcc1-0_15.2.0-14 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.46-2 libctf0_2.46-2 libdb5.3t64_5.3.28+dfsg2-11 libdebconfclient0_0.282+b2 libdebhelper-perl_13.31 libdpkg-perl_1.23.5 libelf1t64_0.194-1 libexpat1_2.7.4-1 libffi8_3.5.2-3+b1 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-14 libgcc-15-dev-amd64-cross_15.2.0-13cross1 libgcc-s1_15.2.0-14 libgcc-s1-amd64-cross_15.2.0-13cross1 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgfortran5_15.2.0-14 libgmp10_2:6.3.0+dfsg-5+b1 libgomp1_15.2.0-14 libgomp1-amd64-cross_15.2.0-13cross1 libgprofng0_2.46-2 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-14 libhwasan0-amd64-cross_15.2.0-13cross1 libisl23_0.27-1+b1 libitm1_15.2.0-14 libitm1-amd64-cross_15.2.0-13cross1 libjansson4_2.14-2+b4 liblapack-dev_3.12.1-7+b1 liblapack3_3.12.1-7+b1 liblmdb0_0.9.31-1+b3 liblsan0_15.2.0-14 liblsan0-amd64-cross_15.2.0-13cross1 liblz4-1_1.10.0-8 liblzma5_5.8.2-2 libmagic-mgc_1:5.46-5+b1 libmagic1t64_1:5.46-5+b1 libmbedcrypto16_3.6.5-0.1 libmbedtls21_3.6.5-0.1 libmbedx509-7_3.6.5-0.1 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libuchardet0_0.0.8-2+b1 libudev1_260~rc1-1 libunistring5_1.3-2+b1 libuuid1_2.41.3-4 libuv1t64_1.51.0-2+b1 libxml2-16_2.15.1+dfsg-2+b1 libxxhash0_0.8.3-2+b1 libzstd1_1.5.7+dfsg-3+b1 linux-libc-dev_6.18.12-1 linux-libc-dev-amd64-cross_6.18.12-1 login_1:4.16.0-2+really2.41.3-4 login.defs_1:4.19.3-1 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260129-1 media-types_14.0.0 ncbi-blast+_2.17.0+ds-6 ncbi-data_6.1.20170106+dfsg2-7 ncbi-vdb-data_3.2.1+dfsg-2 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 netbase_6.5 openssl-provider-legacy_3.5.5-1 patch_2.8-2+b1 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 po-debconf_1.0.22 procps_2:4.0.4-9+b1 python3_3.13.9-3 python3-minimal_3.13.9-3 python3.13_3.13.12-1 python3.13-minimal_3.13.12-1 readline-common_8.3-4 rpcsvc-proto_1.4.3-1+b2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b2 sensible-utils_0.0.26 sqv_1.3.0-5 sysvinit-utils_3.15-6+b1 tar_1.35+dfsg-4 tzdata_2025c-3 util-linux_2.41.3-4 xz-utils_5.8.2-2 zlib1g_1:1.3.dfsg+really1.3.1-3 +------------------------------------------------------------------------------+ | Build Thu, 26 Feb 2026 01:55:03 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: proteinortho Binary: proteinortho Architecture: any Version: 6.3.1+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/proteinortho Vcs-Git: https://salsa.debian.org/med-team/proteinortho.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper Package-List: proteinortho deb science optional arch=any Checksums-Sha1: 36ddff1bcbf8dde0a19795f74e154e74aadc1705 375988 proteinortho_6.3.1+dfsg.orig.tar.xz d2526cacd7835c2f294f0219e9514a1644f13e78 7248 proteinortho_6.3.1+dfsg-1.debian.tar.xz Checksums-Sha256: 7ce978cf6d33a6f67a3138d7f4cafe3ed5c1dcfbdd70224f1514385df9531679 375988 proteinortho_6.3.1+dfsg.orig.tar.xz ab190de700fdc10752e33b2e0c263f6166a2dfb8d8a119d987a7265b99df61fe 7248 proteinortho_6.3.1+dfsg-1.debian.tar.xz Files: 286e6fd86b91807e92db7e8bd7a3c87c 375988 proteinortho_6.3.1+dfsg.orig.tar.xz ee4d531727d1dc02b1af12b004ed1c99 7248 proteinortho_6.3.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWg1C8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHolg/8CJZu3mudXnpM0z+TV/H6OgBg+eGm/mkU opYsSgqwFb4k6PwHTa9VA3Zq+liUKDRLBvRyz0olnOff5RhE5t+xys2LMHLj+n4g Maij/jnhq+XbAefm4Z0MFg4LsVH/rrKCn+fWlCV7H4YoKL/QEkbsIebdD4l+7jhV qe1cMgEHjmG+6XccBmpii+dLyIQGGuRGIIdmaOzmxPw8EzFQkE7uOdhWG42PtPgo YVM/JZyLXe7gtY73UM8MFOTIuJ/RVOwx/BUOjuC6P9zu0TimNhwBnNvwQW+PECu5 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/build/reproducible-path/proteinortho-6.3.1+dfsg dpkg-source: info: unpacking proteinortho_6.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_6.3.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_diamond Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.3.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/build/reproducible-path/proteinortho-6.3.1+dfsg' rm -rf src/BUILD test/C*.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[1]: Leaving directory '/build/reproducible-path/proteinortho-6.3.1+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 INSTALL="install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc make[1]: Entering directory '/build/reproducible-path/proteinortho-6.3.1+dfsg' CC = x86_64-linux-gnu-gcc CCFLAGS = CXX = x86_64-linux-gnu-g++ CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/proteinortho-6.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection MTUNEARCHFLAGS = LDFLAGS = -Wl,-z,relro -Wl,-z,now LDLIBS = STATIC = FALSE Creating build directory ... [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) x86_64-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/proteinortho-6.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -o src/BUILD/Linux_aarch64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /bin/sh: 1: src/BUILD/Linux_aarch64/proteinortho_clustering: Exec format error ......dynamic linking failed too, now I try dynamic linking without -WL,-whole-archive (this should now work for OSX). x86_64-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/proteinortho-6.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -o src/BUILD/Linux_aarch64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -lpthread /bin/sh: 3: src/BUILD/Linux_aarch64/proteinortho_clustering: Exec format error ......dynamic linking failed (without -WL,-whole-archive) too too, now I try to openblas. x86_64-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/proteinortho-6.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -o src/BUILD/Linux_aarch64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -lopenblas -pthread -lpthread /usr/bin/x86_64-linux-gnu-ld.bfd: cannot find -lopenblas: No such file or directory collect2: error: ld returned 1 exit status ......last linking failed too too too, now I try to recompile lapack (v.3.8.0) and then compile proteinortho_clustering with dynamic linking. ......[ 33%] Extracting the LAPACK library cd src; tar -xzvf lapack-3.8.0.tar.gz ......[ 66%] Compiling the LAPACK library (using cmake + make) mkdir src/lapack-3.8.0/build; cd src/lapack-3.8.0/build; cmake .. -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g++ > /dev/null; make all -j4 /bin/sh: 10: cd: can't cd to src/lapack-3.8.0/build /bin/sh: 10: cmake: not found E: Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 2026-02-26T04:30:58Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Thu, 26 Feb 2026 04:30:58 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/proteinortho-6.3.1+dfsg/ -------------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/proteinortho-6.3.1+dfsg/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup Thu, 26 Feb 2026 04:30:59 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 143) +------------------------------------------------------------------------------+ | Summary Thu, 26 Feb 2026 04:31:02 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 9350 Distribution: unstable Fail-Stage: build Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 67 Job: proteinortho_6.3.1+dfsg-1 Machine Architecture: arm64 Package: proteinortho Package-Time: 9468 Source-Version: 6.3.1+dfsg-1 Space: n/a Status: attempted Version: 6.3.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 2026-02-26T04:30:58Z Build needed 02:37:48, no disk space