sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | proteinortho 6.3.1+dfsg-1 (s390x) Sat, 13 Jan 2024 08:46:05 +0000 | +==============================================================================+ Package: proteinortho Version: 6.3.1+dfsg-1 Source Version: 6.3.1+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-a5fa47c7-fea1-4111-9fd1-cb5fe2d227e7' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-MqjGwx/resolver-j48v3F' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-13-0803.58-F-2024-01-13-0203.57.pdiff [7060 B] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-13-0803.58-F-2024-01-13-0203.57.pdiff [8250 B] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-13-0803.58-F-2024-01-13-0203.57.pdiff [7060 B] Get:6 http://localhost:3142/debian sid/main s390x Packages [9222 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-13-0803.58-F-2024-01-13-0203.57.pdiff [8250 B] Fetched 9562 kB in 3s (3412 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/proteinortho.git Please use: git clone https://salsa.debian.org/med-team/proteinortho.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 385 kB of source archives. Get:1 http://localhost:3142/debian sid/main proteinortho 6.3.1+dfsg-1 (dsc) [2161 B] Get:2 http://localhost:3142/debian sid/main proteinortho 6.3.1+dfsg-1 (tar) [376 kB] Get:3 http://localhost:3142/debian sid/main proteinortho 6.3.1+dfsg-1 (diff) [7248 B] Fetched 385 kB in 1s (339 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/proteinortho-MqjGwx/proteinortho-6.3.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/proteinortho-MqjGwx' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev, diamond-aligner (>= 2.0.10~), procps, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [826 B] Get:5 copy:/<>/apt_archive ./ Packages [834 B] Fetched 2269 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:s390x dpkg-cross dwz file g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-13-base:s390x gcc-13-cross-base gcc-13-s390x-linux-gnu gcc-13-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libblas-dev:s390x libblas3:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-13-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgfortran5:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libicu72 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblapack-dev:s390x liblapack3:s390x liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl-dev:s390x libnsl2:s390x libpipeline1 libproc2-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 libssl3:s390x libstdc++-11-dev:s390x libstdc++-13-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross m4 man-db media-types ncbi-blast+ ncbi-data netbase po-debconf procps python3 python3-minimal python3.11 python3.11-minimal readline-common sensible-utils ucf zlib1g:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch g++-13-multilib-s390x-linux-gnu gcc-13-doc gcc-13-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:s390x glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x krb5-doc:s390x krb5-user:s390x libstdc++-11-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support readline-doc Recommended packages: med-config:s390x curl | wget | lynx libidn2-0:s390x libarchive-cpio-perl krb5-locales:s390x libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism diamond-aligner:s390x dpkg-cross dwz file g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-13-base:s390x gcc-13-cross-base gcc-13-s390x-linux-gnu gcc-13-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libblas-dev:s390x libblas3:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-13-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgfortran5:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libicu72 libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x liblapack-dev:s390x liblapack3:s390x liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl-dev:s390x libnsl2:s390x libpipeline1 libproc2-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 libssl3:s390x libstdc++-11-dev:s390x libstdc++-13-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross m4 man-db media-types ncbi-blast+ ncbi-data netbase po-debconf procps python3 python3-minimal python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x 0 upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After this operation, 467 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [968 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b1 [15.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.7-2 [816 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-2+b2 [99.4 kB] Get:5 http://localhost:3142/debian sid/main amd64 python3.11-minimal amd64 3.11.7-2 [2035 kB] Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:7 http://localhost:3142/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4+20231209-1 [135 kB] Get:10 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:11 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:12 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.44.2-1 [882 kB] Get:13 http://localhost:3142/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.7-2 [1822 kB] Get:14 http://localhost:3142/debian sid/main amd64 python3.11 amd64 3.11.7-2 [590 kB] Get:15 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:16 http://localhost:3142/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:17 http://localhost:3142/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-2+b1 [64.6 kB] Get:18 http://localhost:3142/debian sid/main amd64 procps amd64 2:4.0.4-2+b1 [879 kB] Get:19 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:20 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get:22 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get:23 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:24 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:25 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:26 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get:27 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Get:28 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get:29 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:30 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:31 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:32 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:33 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:34 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:35 http://localhost:3142/debian sid/main amd64 binutils-s390x-linux-gnu amd64 2.41.50.20231227-1 [2449 kB] Get:36 http://localhost:3142/debian sid/main amd64 gcc-13-s390x-linux-gnu-base amd64 13.2.0-7cross2 [41.0 kB] Get:37 http://localhost:3142/debian sid/main amd64 cpp-13-s390x-linux-gnu amd64 13.2.0-7cross2 [8423 kB] Get:38 http://localhost:3142/debian sid/main amd64 cpp-s390x-linux-gnu amd64 4:13.2.0-2 [4164 B] Get:39 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:40 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:41 http://localhost:3142/debian sid/main amd64 libc6-s390x-cross all 2.37-12cross1 [1001 kB] Get:42 http://localhost:3142/debian sid/main amd64 libgcc-s1-s390x-cross all 13.2.0-7cross2 [31.7 kB] Get:43 http://localhost:3142/debian sid/main amd64 libgomp1-s390x-cross all 13.2.0-7cross2 [124 kB] Get:44 http://localhost:3142/debian sid/main amd64 libitm1-s390x-cross all 13.2.0-7cross2 [26.4 kB] Get:45 http://localhost:3142/debian sid/main amd64 libatomic1-s390x-cross all 13.2.0-7cross2 [8212 B] Get:46 http://localhost:3142/debian sid/main amd64 libasan8-s390x-cross all 13.2.0-7cross2 [2434 kB] Get:47 http://localhost:3142/debian sid/main amd64 libstdc++6-s390x-cross all 13.2.0-7cross2 [688 kB] Get:48 http://localhost:3142/debian sid/main amd64 libubsan1-s390x-cross all 13.2.0-7cross2 [990 kB] Get:49 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-s390x-cross all 13.2.0-7cross2 [842 kB] Get:50 http://localhost:3142/debian sid/main amd64 gcc-13-s390x-linux-gnu amd64 13.2.0-7cross2 [16.7 MB] Get:51 http://localhost:3142/debian sid/main amd64 gcc-s390x-linux-gnu amd64 4:13.2.0-2 [1464 B] Get:52 http://localhost:3142/debian sid/main amd64 linux-libc-dev-s390x-cross all 6.5.8-1cross1 [2010 kB] Get:53 http://localhost:3142/debian sid/main amd64 libc6-dev-s390x-cross all 2.37-12cross1 [1383 kB] Get:54 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-s390x-cross all 13.2.0-7cross2 [2231 kB] Get:55 http://localhost:3142/debian sid/main amd64 g++-13-s390x-linux-gnu amd64 13.2.0-7cross2 [9379 kB] Get:56 http://localhost:3142/debian sid/main amd64 g++-s390x-linux-gnu amd64 4:13.2.0-2 [1176 B] Get:57 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:58 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:59 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:60 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:61 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:62 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:66 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:67 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:68 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:69 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:70 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:71 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:72 http://localhost:3142/debian sid/main amd64 crossbuild-essential-s390x all 12.10 [3480 B] Get:73 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.9 [82.3 kB] Get:74 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:75 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:76 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:77 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:78 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:79 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:80 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:81 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:82 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:83 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:84 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:85 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.9 [956 kB] Get:86 http://localhost:3142/debian sid/main s390x gcc-13-base s390x 13.2.0-9 [41.5 kB] Get:87 http://localhost:3142/debian sid/main s390x libgcc-s1 s390x 13.2.0-9 [31.7 kB] Get:88 http://localhost:3142/debian sid/main s390x libc6 s390x 2.37-13 [2247 kB] Get:89 http://localhost:3142/debian sid/main s390x libstdc++6 s390x 13.2.0-9 [738 kB] Get:90 http://localhost:3142/debian sid/main s390x zlib1g s390x 1:1.3.dfsg-3 [85.8 kB] Get:91 http://localhost:3142/debian sid/main s390x diamond-aligner s390x 2.1.8-2 [2080 kB] Get:92 http://localhost:3142/debian sid/main s390x gcc-11-base s390x 11.4.0-7 [40.3 kB] Get:93 http://localhost:3142/debian sid/main s390x libasan6 s390x 11.4.0-7 [1928 kB] Get:94 http://localhost:3142/debian sid/main s390x libatomic1 s390x 13.2.0-9 [8504 B] Get:95 http://localhost:3142/debian sid/main s390x libblas3 s390x 3.11.0-2 [134 kB] Get:96 http://localhost:3142/debian sid/main s390x libblas-dev s390x 3.11.0-2 [141 kB] Get:97 http://localhost:3142/debian sid/main s390x libcrypt1 s390x 1:4.4.36-4 [93.8 kB] Get:98 http://localhost:3142/debian sid/main s390x libcrypt-dev s390x 1:4.4.36-4 [122 kB] Get:99 http://localhost:3142/debian sid/main s390x libkrb5support0 s390x 1.20.1-5 [33.2 kB] Get:100 http://localhost:3142/debian sid/main s390x libcom-err2 s390x 1.47.0-2+b1 [19.9 kB] Get:101 http://localhost:3142/debian sid/main s390x libk5crypto3 s390x 1.20.1-5 [82.6 kB] Get:102 http://localhost:3142/debian sid/main s390x libkeyutils1 s390x 1.6.3-2+b2 [9108 B] Get:103 http://localhost:3142/debian sid/main s390x libssl3 s390x 3.1.4-2 [1688 kB] Get:104 http://localhost:3142/debian sid/main s390x libkrb5-3 s390x 1.20.1-5 [325 kB] Get:105 http://localhost:3142/debian sid/main s390x libgssapi-krb5-2 s390x 1.20.1-5 [129 kB] Get:106 http://localhost:3142/debian sid/main s390x libtirpc3 s390x 1.3.4+ds-1 [79.1 kB] Get:107 http://localhost:3142/debian sid/main s390x libnsl2 s390x 1.3.0-3 [38.4 kB] Get:108 http://localhost:3142/debian sid/main s390x libtirpc-dev s390x 1.3.4+ds-1 [186 kB] Get:109 http://localhost:3142/debian sid/main s390x libnsl-dev s390x 1.3.0-3 [65.3 kB] Get:110 http://localhost:3142/debian sid/main s390x libc6-dev s390x 2.37-13 [1400 kB] Get:111 http://localhost:3142/debian sid/main s390x libgomp1 s390x 13.2.0-9 [126 kB] Get:112 http://localhost:3142/debian sid/main s390x libitm1 s390x 13.2.0-9 [26.9 kB] Get:113 http://localhost:3142/debian sid/main s390x libubsan1 s390x 13.2.0-9 [991 kB] Get:114 http://localhost:3142/debian sid/main s390x libgcc-11-dev s390x 11.4.0-7 [692 kB] Get:115 http://localhost:3142/debian sid/main s390x libgfortran5 s390x 13.2.0-9 [452 kB] Get:116 http://localhost:3142/debian sid/main s390x liblapack3 s390x 3.11.0-2 [1777 kB] Get:117 http://localhost:3142/debian sid/main s390x liblapack-dev s390x 3.11.0-2 [3429 kB] Get:118 http://localhost:3142/debian sid/main amd64 liblmdb0 amd64 0.9.31-1 [44.3 kB] Get:119 http://localhost:3142/debian sid/main amd64 libmbedcrypto7 amd64 2.28.6-1 [279 kB] Get:120 http://localhost:3142/debian sid/main amd64 libmbedx509-1 amd64 2.28.6-1 [130 kB] Get:121 http://localhost:3142/debian sid/main amd64 libmbedtls14 amd64 2.28.6-1 [165 kB] Get:122 http://localhost:3142/debian sid/main s390x libstdc++-11-dev s390x 11.4.0-7 [1944 kB] Get:123 http://localhost:3142/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:124 http://localhost:3142/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-4 [12.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 114 MB in 1s (177 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 16260 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.7-2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.7-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-2+b2_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-2+b2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-2_amd64.deb ... Unpacking python3.11-minimal (3.11.7-2) ... Setting up libpython3.11-minimal:amd64 (3.11.7-2) ... Setting up libexpat1:amd64 (2.5.0-2+b2) ... Setting up python3.11-minimal (3.11.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 16592 files and directories currently installed.) 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Unpacking libnsl-dev:s390x (1.3.0-3) ... Selecting previously unselected package libc6-dev:s390x. Preparing to unpack .../094-libc6-dev_2.37-13_s390x.deb ... Unpacking libc6-dev:s390x (2.37-13) ... Selecting previously unselected package libgomp1:s390x. Preparing to unpack .../095-libgomp1_13.2.0-9_s390x.deb ... Unpacking libgomp1:s390x (13.2.0-9) ... Selecting previously unselected package libitm1:s390x. Preparing to unpack .../096-libitm1_13.2.0-9_s390x.deb ... Unpacking libitm1:s390x (13.2.0-9) ... Selecting previously unselected package libubsan1:s390x. Preparing to unpack .../097-libubsan1_13.2.0-9_s390x.deb ... Unpacking libubsan1:s390x (13.2.0-9) ... Selecting previously unselected package libgcc-11-dev:s390x. Preparing to unpack .../098-libgcc-11-dev_11.4.0-7_s390x.deb ... Unpacking libgcc-11-dev:s390x (11.4.0-7) ... Selecting previously unselected package libgfortran5:s390x. Preparing to unpack .../099-libgfortran5_13.2.0-9_s390x.deb ... Unpacking libgfortran5:s390x (13.2.0-9) ... Selecting previously unselected package liblapack3:s390x. Preparing to unpack .../100-liblapack3_3.11.0-2_s390x.deb ... Unpacking liblapack3:s390x (3.11.0-2) ... Selecting previously unselected package liblapack-dev:s390x. Preparing to unpack .../101-liblapack-dev_3.11.0-2_s390x.deb ... Unpacking liblapack-dev:s390x (3.11.0-2) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../102-liblmdb0_0.9.31-1_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.31-1) ... Selecting previously unselected package libmbedcrypto7:amd64. Preparing to unpack .../103-libmbedcrypto7_2.28.6-1_amd64.deb ... Unpacking libmbedcrypto7:amd64 (2.28.6-1) ... Selecting previously unselected package libmbedx509-1:amd64. Preparing to unpack .../104-libmbedx509-1_2.28.6-1_amd64.deb ... Unpacking libmbedx509-1:amd64 (2.28.6-1) ... Selecting previously unselected package libmbedtls14:amd64. Preparing to unpack .../105-libmbedtls14_2.28.6-1_amd64.deb ... Unpacking libmbedtls14:amd64 (2.28.6-1) ... Selecting previously unselected package libstdc++-11-dev:s390x. Preparing to unpack .../106-libstdc++-11-dev_11.4.0-7_s390x.deb ... Unpacking libstdc++-11-dev:s390x (11.4.0-7) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../107-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../108-ncbi-blast+_2.12.0+ds-4_amd64.deb ... Unpacking ncbi-blast+ (2.12.0+ds-4) ... Selecting previously unselected package sbuild-build-depends-main-dummy:s390x. Preparing to unpack .../109-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-1+b2) ... Setting up liblmdb0:amd64 (0.9.31-1) ... Setting up ncbi-data (6.1.20170106+dfsg1-10) ... Setting up gcc-11-base:s390x (11.4.0-7) ... Setting up libfile-which-perl (1.27-2) ... Setting up libicu72:amd64 (72.1-4) ... Setting up binutils-s390x-linux-gnu (2.41.50.20231227-1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.9) ... Setting up libsqlite3-0:amd64 (3.44.2-1) ... Setting up libc6-s390x-cross (2.37-12cross1) ... Setting up libmagic1:amd64 (1:5.45-2+b1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up linux-libc-dev-s390x-cross (6.5.8-1cross1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:s390x (13.2.0-9) ... Setting up libmbedcrypto7:amd64 (2.28.6-1) ... Setting up gcc-13-s390x-linux-gnu-base:amd64 (13.2.0-7cross2) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up libproc2-0:amd64 (2:4.0.4-2+b1) ... Setting up autopoint (0.21-14) ... Setting up libgcc-s1-s390x-cross (13.2.0-7cross2) ... Setting up libncursesw6:amd64 (6.4+20231209-1) ... Setting up autoconf (2.71-3) ... Setting up libitm1-s390x-cross (13.2.0-7cross2) ... Setting up sensible-utils (0.0.20) ... Setting up libc6-dev-s390x-cross (2.37-12cross1) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up procps (2:4.0.4-2+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up readline-common (8.2-3) ... Setting up libgomp1-s390x-cross (13.2.0-7cross2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up libmbedx509-1:amd64 (2.28.6-1) ... Setting up libmbedtls14:amd64 (2.28.6-1) ... Setting up libtool (2.4.7-7) ... Setting up libstdc++6-s390x-cross (13.2.0-7cross2) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up libatomic1-s390x-cross (13.2.0-7cross2) ... Setting up libasan8-s390x-cross (13.2.0-7cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-13-s390x-linux-gnu (13.2.0-7cross2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libubsan1-s390x-cross (13.2.0-7cross2) ... Setting up cpp-s390x-linux-gnu (4:13.2.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.7-2) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-s390x-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.7-2) ... Setting up libstdc++-13-dev-s390x-cross (13.2.0-7cross2) ... Setting up debhelper (13.11.9) ... Setting up python3 (3.11.6-1) ... Setting up ncbi-blast+ (2.12.0+ds-4) ... Setting up gcc-13-s390x-linux-gnu (13.2.0-7cross2) ... Setting up gcc-s390x-linux-gnu (4:13.2.0-2) ... Setting up g++-13-s390x-linux-gnu (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-s390x-linux-gnu (4:13.2.0-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-s390x (12.10) ... Setting up libgcc-s1:s390x (13.2.0-9) ... Setting up libc6:s390x (2.37-13) ... Setting up libstdc++6:s390x (13.2.0-9) ... Setting up libitm1:s390x (13.2.0-9) ... Setting up libkeyutils1:s390x (1.6.3-2+b2) ... Setting up libssl3:s390x (3.1.4-2) ... Setting up zlib1g:s390x (1:1.3.dfsg-3) ... Setting up libcrypt1:s390x (1:4.4.36-4) ... Setting up libcom-err2:s390x (1.47.0-2+b1) ... Setting up libgomp1:s390x (13.2.0-9) ... Setting up diamond-aligner:s390x (2.1.8-2) ... Setting up libasan6:s390x (11.4.0-7) ... Setting up libkrb5support0:s390x (1.20.1-5) ... Setting up libblas3:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libatomic1:s390x (13.2.0-9) ... Setting up libk5crypto3:s390x (1.20.1-5) ... Setting up libgfortran5:s390x (13.2.0-9) ... Setting up libubsan1:s390x (13.2.0-9) ... Setting up libgcc-11-dev:s390x (11.4.0-7) ... Setting up libcrypt-dev:s390x (1:4.4.36-4) ... Setting up libkrb5-3:s390x (1.20.1-5) ... Setting up libblas-dev:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode Setting up liblapack3:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up liblapack-dev:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode Setting up libgssapi-krb5-2:s390x (1.20.1-5) ... Setting up libtirpc3:s390x (1.3.4+ds-1) ... Setting up libtirpc-dev:s390x (1.3.4+ds-1) ... Setting up libnsl2:s390x (1.3.0-3) ... Setting up libnsl-dev:s390x (1.3.0-3) ... Setting up libc6-dev:s390x (2.37-13) ... Setting up libstdc++-11-dev:s390x (11.4.0-7) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231227-1 dpkg-dev_1.22.2 g++-11_11.4.0-7 g++-13_13.2.0-9 gcc-11_11.4.0-7 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-s390x-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-s390x-cross_13.2.0-7cross2 linux-libc-dev_6.6.9-1 Package versions: adduser_3.137 apt_2.7.9 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.50.20231227-1 binutils-common_2.41.50.20231227-1 binutils-s390x-linux-gnu_2.41.50.20231227-1 binutils-x86-64-linux-gnu_2.41.50.20231227-1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-9 cpp-13-s390x-linux-gnu_13.2.0-7cross2 cpp-s390x-linux-gnu_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-s390x_12.10 dash_0.5.12-6 debconf_1.5.83 debhelper_13.11.9 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diamond-aligner_2.1.8-2 diffutils_1:3.10-1 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1+b1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-9 g++-13-s390x-linux-gnu_13.2.0-7cross2 g++-s390x-linux-gnu_4:13.2.0-2 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-13 gcc-13_13.2.0-9 gcc-13-base_13.2.0-9 gcc-13-cross-base_13.2.0-7cross2 gcc-13-s390x-linux-gnu_13.2.0-7cross2 gcc-13-s390x-linux-gnu-base_13.2.0-7cross2 gcc-9-base_9.5.0-4 gcc-s390x-linux-gnu_4:13.2.0-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-4 libapt-pkg6.0_2.7.9 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_13.2.0-9 libasan8-s390x-cross_13.2.0-7cross2 libatomic1_13.2.0-9 libatomic1-s390x-cross_13.2.0-7cross2 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231227-1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.3-6 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-dev_2.37-13 libc6-dev-s390x-cross_2.37-12cross1 libc6-s390x-cross_2.37-12cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4+b2 libcc1-0_13.2.0-9 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41.50.20231227-1 libctf0_2.41.50.20231227-1 libdb5.3_5.3.28+dfsg2-4+b1 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.2 libelf1_0.190-1+b1 libexpat1_2.5.0-2+b2 libext2fs2_1.47.0-2+b1 libfakeroot_1.32.2-1+b1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-7 libgcc-13-dev_13.2.0-9 libgcc-13-dev-s390x-cross_13.2.0-7cross2 libgcc-s1_13.2.0-9 libgcc-s1-s390x-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran5_13.2.0-9 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9 libgomp1-s390x-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.50.20231227-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhwasan0_13.2.0-9 libicu72_72.1-4 libidn2-0_2.3.4-1+b2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_13.2.0-9 libitm1-s390x-cross_13.2.0-7cross2 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2+b2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 liblmdb0_0.9.31-1 liblocale-gettext-perl_1.07-6+b1 liblsan0_13.2.0-9 liblz4-1_1.9.4-1+b2 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2+b1 libmagic1_1:5.45-2+b1 libmbedcrypto7_2.28.6-1 libmbedtls14_2.28.6-1 libmbedx509-1_2.28.6-1 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-modules_1.5.2-9.1+b1 libpam-modules-bin_1.5.2-9.1+b1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1+b1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1+b2 libproc2-0_2:4.0.4-2+b1 libpython3-stdlib_3.11.6-1 libpython3.11-minimal_3.11.7-2 libpython3.11-stdlib_3.11.7-2 libquadmath0_13.2.0-9 libreadline8_8.2-3 libseccomp2_2.5.5-1 libselinux1_3.5-1+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b2 libsepol2_3.5-2 libsframe1_2.41.50.20231227-1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libss2_1.47.0-2+b1 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-s390x-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-s390x-cross_13.2.0-7cross2 libsub-override-perl_0.10-1 libsystemd0_255.2-4 libtasn1-6_4.19.0-3+b2 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_13.2.0-9 libubsan1_13.2.0-9 libubsan1-s390x-cross_13.2.0-7cross2 libuchardet0_0.0.8-1 libudev1_255.2-4 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.9-1 linux-libc-dev-s390x-cross_6.5.8-1cross1 login_1:4.13+dfsg1-3+b1 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.3-6 ncbi-blast+_2.12.0+ds-4 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 netbase_6.4 passwd_1:4.13+dfsg1-3+b1 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.34_5.34.0-5 perl-modules-5.38_5.38.2-3 po-debconf_1.0.21+nmu1 procps_2:4.0.4-2+b1 python3_3.11.6-1 python3-minimal_3.11.6-1 python3.11_3.11.7-2 python3.11-minimal_3.11.7-2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.35+dfsg-3 tzdata_2023d-1 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: proteinortho Binary: proteinortho Architecture: any Version: 6.3.1+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/paulklemm_PHD/proteinortho Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/proteinortho Vcs-Git: https://salsa.debian.org/med-team/proteinortho.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-blast+, liblapack-dev | libatlas-base-dev | liblapack.so, diamond-aligner (>= 2.0.10~), procps, debhelper Package-List: proteinortho deb science optional arch=any Checksums-Sha1: 36ddff1bcbf8dde0a19795f74e154e74aadc1705 375988 proteinortho_6.3.1+dfsg.orig.tar.xz d2526cacd7835c2f294f0219e9514a1644f13e78 7248 proteinortho_6.3.1+dfsg-1.debian.tar.xz Checksums-Sha256: 7ce978cf6d33a6f67a3138d7f4cafe3ed5c1dcfbdd70224f1514385df9531679 375988 proteinortho_6.3.1+dfsg.orig.tar.xz ab190de700fdc10752e33b2e0c263f6166a2dfb8d8a119d987a7265b99df61fe 7248 proteinortho_6.3.1+dfsg-1.debian.tar.xz Files: 286e6fd86b91807e92db7e8bd7a3c87c 375988 proteinortho_6.3.1+dfsg.orig.tar.xz ee4d531727d1dc02b1af12b004ed1c99 7248 proteinortho_6.3.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWg1C8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHolg/8CJZu3mudXnpM0z+TV/H6OgBg+eGm/mkU opYsSgqwFb4k6PwHTa9VA3Zq+liUKDRLBvRyz0olnOff5RhE5t+xys2LMHLj+n4g Maij/jnhq+XbAefm4Z0MFg4LsVH/rrKCn+fWlCV7H4YoKL/QEkbsIebdD4l+7jhV qe1cMgEHjmG+6XccBmpii+dLyIQGGuRGIIdmaOzmxPw8EzFQkE7uOdhWG42PtPgo YVM/JZyLXe7gtY73UM8MFOTIuJ/RVOwx/BUOjuC6P9zu0TimNhwBnNvwQW+PECu5 nJWgm1mixkpGvsQSNsu7ITUPMbbr/LE9Vu7yt/1V28SbCQxgsNwuONG1+Qyao3lt vv9nhH9YUOktpfyr2dCJinpqEQ5uv1eYeSXpyNIJzwWSPeWQW+zxuPDSa0u750br C3/8UjoMWTrVDbTc0Y9CN9coUHkghXPvLsxxpqpj4gBIWgjFM3SMNP56p1Rv5uRx QZUk5F81PteMIwgkp0z3bY0ZezA2o7eLFjGmrwLwl4l0hdWrjHyhumtJuTldFZt9 HJ6rlvfDuj+Kml2uC41CMoHV5thvnQC2MjBVQjG38IYf2AAyd6oafGFA8hHqF4qu eL69T0QQeXHICNXvCE4xyjVM8xIWfeYNCbkZULbOq7bdEzueDZEP/GzLCUkM+d2d YXWwk5h9Tsw= =8nLU -----END PGP SIGNATURE----- gpgv: Signature made Fri Jan 12 05:54:55 2024 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./proteinortho_6.3.1+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting proteinortho in /<> dpkg-source: info: unpacking proteinortho_6.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking proteinortho_6.3.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_diamond Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.iloHCEiA5Z/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-a5fa47c7-fea1-4111-9fd1-cb5fe2d227e7 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package proteinortho dpkg-buildpackage: info: source version 6.3.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -rf src/BUILD test/C*.faa.* test/E.faa.* test/C2.faa.* test/L.faa.* test/M.faa.* rm -rf src/lapack-3.8.0/ make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=s390x-linux-gnu-pkg-config CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc make[1]: Entering directory '/<>' CC = s390x-linux-gnu-gcc CCFLAGS = CXX = s390x-linux-gnu-g++ CXXFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security MTUNEARCHFLAGS = LDFLAGS = -Wl,-z,relro -Wl,-z,now LDLIBS = STATIC = FALSE Creating build directory ... [ 10%] Prepare proteinortho_clustering ... [ 20%] Building **proteinortho_clustering** with LAPACK (dynamic linking) s390x-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /bin/sh: 1: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed too, now I try dynamic linking without -WL,-whole-archive (this should now work for OSX). s390x-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -llapack -lblas -pthread -lpthread /bin/sh: 3: src/BUILD/Linux_x86_64/proteinortho_clustering: Exec format error ......dynamic linking failed (without -WL,-whole-archive) too too, now I try to openblas. s390x-linux-gnu-g++ -std=c++11 -O3 -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -o src/BUILD/Linux_x86_64/proteinortho_clustering src/proteinortho_clustering.cpp -Wl,-z,relro -Wl,-z,now -lopenblas -pthread -lpthread /usr/lib/gcc-cross/s390x-linux-gnu/13/../../../../s390x-linux-gnu/bin/ld: cannot find -lopenblas: No such file or directory collect2: error: ld returned 1 exit status ......last linking failed too too too, now I try to recompile lapack (v.3.8.0) and then compile proteinortho_clustering with dynamic linking. ......[ 33%] Extracting the LAPACK library cd src; tar -xzvf lapack-3.8.0.tar.gz ......[ 66%] Compiling the LAPACK library (using cmake + make) mkdir src/lapack-3.8.0/build; cd src/lapack-3.8.0/build; cmake .. -DCMAKE_CXX_COMPILER=s390x-linux-gnu-g++ > /dev/null; make all -j4 /bin/sh: 10: cd: can't cd to src/lapack-3.8.0/build /bin/sh: 10: cmake: not found E: Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 2024-01-13T11:17:32Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3316 Build-Time: 9060 Distribution: unstable Fail-Stage: build Foreign Architectures: s390x Host Architecture: s390x Install-Time: 15 Job: proteinortho_6.3.1+dfsg-1 Machine Architecture: amd64 Package: proteinortho Package-Time: 9087 Source-Version: 6.3.1+dfsg-1 Space: 3316 Status: attempted Version: 6.3.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 2024-01-13T11:17:32Z Build needed 02:31:27, 3316k disk space