sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | provean 1.1.5+ds-2 (armel) Thu, 26 May 2022 07:47:32 +0000 | +==============================================================================+ Package: provean Version: 1.1.5+ds-2 Source Version: 1.1.5+ds-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-7dfd59ef-a015-410b-b832-cd5d959834d0' with '<>' I: NOTICE: Log filtering will replace 'build/provean-Dw7wy6/resolver-42NW1T' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main armel Packages [8749 kB] Fetched 8749 kB in 2s (5130 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'provean' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/provean.git Please use: git clone https://salsa.debian.org/med-team/provean.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 26.9 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main provean 1.1.5+ds-2 (dsc) [1957 B] Get:2 http://debian.oregonstate.edu/debian unstable/main provean 1.1.5+ds-2 (tar) [22.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main provean 1.1.5+ds-2 (diff) [2220 B] Fetched 26.9 kB in 0s (203 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/provean-Dw7wy6/provean-1.1.5+ds' with '<>' I: NOTICE: Log filtering will replace 'build/provean-Dw7wy6' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: cd-hit, debhelper-compat (= 13), ncbi-blast+, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: cd-hit, debhelper-compat (= 13), ncbi-blast+, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [417 B] Get:5 copy:/<>/apt_archive ./ Packages [505 B] Fetched 1879 B in 0s (70.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cd-hit:armel cpp-11-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-arm-linux-gnueabi gcc-11-arm-linux-gnueabi-base gcc-11-cross-base gcc-12-base:armel gcc-12-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2 libgssapi-krb5-2:armel libicu71 libio-string-perl libk5crypto3 libk5crypto3:armel libkeyutils1 libkeyutils1:armel libkrb5-3 libkrb5-3:armel libkrb5support0 libkrb5support0:armel liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libnsl-dev libnsl-dev:armel libnsl2 libnsl2:armel libperl5.34 libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libsigsegv2 libsqlite3-0 libssl3 libssl3:armel libstdc++-11-dev libstdc++-11-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-common libtirpc-dev libtirpc-dev:armel libtirpc3 libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db media-types ncbi-blast+ ncbi-data perl perl-modules-5.34 po-debconf python3 python3-minimal python3.10 python3.10-minimal rpcsvc-proto sensible-utils ucf zlib1g:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel glibc-doc manpages-dev:armel gnupg git bzr krb5-doc krb5-user krb5-doc:armel krb5-user:armel libstdc++-11-doc libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:armel libfile-fcntllock-perl libarchive-cpio-perl krb5-locales krb5-locales:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cd-hit:armel cpp-11-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-arm-linux-gnueabi gcc-11-arm-linux-gnueabi-base gcc-11-cross-base gcc-12-base:armel gcc-12-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2 libgssapi-krb5-2:armel libicu71 libio-string-perl libk5crypto3 libk5crypto3:armel libkeyutils1 libkeyutils1:armel libkrb5-3 libkrb5-3:armel libkrb5support0 libkrb5support0:armel liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libnsl-dev libnsl-dev:armel libnsl2 libnsl2:armel libperl5.34 libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libsigsegv2 libsqlite3-0 libssl3 libssl3:armel libstdc++-11-dev libstdc++-11-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-common libtirpc-dev libtirpc-dev:armel libtirpc3 libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db media-types ncbi-blast+ ncbi-data perl perl-modules-5.34 po-debconf python3 python3-minimal python3.10 python3.10-minimal rpcsvc-proto sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. Need to get 135 MB of archives. After this operation, 544 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.34 all 5.34.0-4 [2850 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.34 amd64 5.34.0-4 [4200 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.34.0-4 [297 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libssl3 amd64 3.0.3-5 [2032 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.10-minimal amd64 3.10.4-4+b1 [828 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.4.8-1 [109 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 python3.10-minimal amd64 3.10.4-4+b1 [2090 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.10.4-1+b1 [38.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 8.0.0 [33.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.19.2-2+b2 [65.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.19.2-2+b2 [114 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-3 [15.5 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.19.2-2+b2 [363 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.19.2-2+b2 [166 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-common all 1.3.2-2 [13.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.38.5-1 [830 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.10-stdlib amd64 3.10.4-4+b1 [1704 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 python3.10 amd64 3.10.4-4+b1 [537 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.10.4-1+b1 [22.0 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.10.4-1+b1 [38.4 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.4.0-5 [200 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-6 [175 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.38-4 [144 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.6-1 [38.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.10.2-1 [1411 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-6 [510 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.38-4 [3152 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.27-1.1 [118 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.33-7 [2289 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.3.0-3 [1965 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.3.0-3 [10.2 MB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.21.8 [1615 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.21.8 [2357 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:56 http://debian.oregonstate.edu/debian unstable/main armel gcc-12-base armel 12.1.0-2 [207 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main armel libgcc-s1 armel 12.1.0-2 [38.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.33-7 [2363 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 12.1.0-2 [99.5 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 12.1.0-2 [507 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-4 [84.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main armel cd-hit armel 4.8.1-4 [503 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-arm-linux-gnueabi-base amd64 11.3.0-3cross1 [209 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-arm-linux-gnueabi amd64 11.3.0-3cross1 [8049 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:11.2.0-2 [17.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.3.0-3cross1 [204 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-12-cross-base all 12.1.0-2cross1 [202 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.33-1cross1 [1130 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armel-cross all 12.1.0-2cross1 [38.5 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 12.1.0-2cross1 [96.8 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 12.1.0-2cross1 [8872 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armel-cross all 11.3.0-3cross1 [1937 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 12.1.0-2cross1 [465 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 12.1.0-2cross1 [861 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-armel-cross all 11.3.0-3cross1 [704 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-arm-linux-gnueabi amd64 11.3.0-3cross1 [15.9 MB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:11.2.0-2 [1460 B] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.15.5-1cross1 [1541 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.33-1cross1 [1810 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-armel-cross all 11.3.0-3cross1 [1972 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-arm-linux-gnueabi amd64 11.3.0-3cross1 [8933 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:11.2.0-2 [1176 B] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1 [708 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.27-1 [17.3 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.9 [6704 B] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.7.1 [195 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.7-4 [526 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.187-1 [179 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-6 [1310 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.7.1 [1071 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.4.0-5 [2700 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 12.1.0-2 [9084 B] Get:115 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.17.6-1+b1 [1517 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.27-1.1 [97.3 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armel libcrypt-dev armel 1:4.4.27-1.1 [127 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.46.5-2 [74.9 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.19.2-2+b2 [62.8 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.19.2-2+b2 [108 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.6.1-3 [14.5 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main armel libssl3 armel 3.0.3-5 [1645 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.19.2-2+b2 [316 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.19.2-2+b2 [143 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armel libtirpc3 armel 1.3.2-2 [71.6 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armel libnsl2 armel 1.3.0-2 [33.0 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armel libtirpc-dev armel 1.3.2-2 [182 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armel libnsl-dev armel 1.3.0-2 [61.7 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.33-7 [1856 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 12.1.0-2 [862 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.4.0-5 [639 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedcrypto7 amd64 2.28.0-2 [272 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedx509-1 amd64 2.28.0-2 [127 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 libmbedtls14 amd64 2.28.0-2 [161 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.4.0-5 [1762 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 ncbi-blast+ amd64 2.12.0+ds-3+b1 [11.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 MB in 1s (126 MB/s) Selecting previously unselected package perl-modules-5.34. (Reading database ... 10536 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.34_5.34.0-4_all.deb ... Unpacking perl-modules-5.34 (5.34.0-4) ... Selecting previously unselected package libperl5.34:amd64. Preparing to unpack .../1-libperl5.34_5.34.0-4_amd64.deb ... Unpacking libperl5.34:amd64 (5.34.0-4) ... Selecting previously unselected package perl. Preparing to unpack .../2-perl_5.34.0-4_amd64.deb ... Unpacking perl (5.34.0-4) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../3-liblocale-gettext-perl_1.07-4+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../4-libssl3_3.0.3-5_amd64.deb ... Unpacking libssl3:amd64 (3.0.3-5) ... Selecting previously unselected package libpython3.10-minimal:amd64. Preparing to unpack .../5-libpython3.10-minimal_3.10.4-4+b1_amd64.deb ... 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Setting up libkrb5-3:amd64 (1.19.2-2+b2) ... Setting up libc6-dev-armel-cross (2.33-1cross1) ... Setting up libelf1:amd64 (0.187-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up gcc-9-base:armel (9.4.0-5) ... Setting up libperl5.34:amd64 (5.34.0-4) ... Setting up gettext (0.21-6) ... Setting up libgomp1-armel-cross (12.1.0-2cross1) ... Setting up libmbedx509-1:amd64 (2.28.0-2) ... Setting up libmbedtls14:amd64 (2.28.0-2) ... Setting up libgcc-s1-armel-cross (12.1.0-2cross1) ... Setting up m4 (1.4.18-5) ... Setting up libstdc++6-armel-cross (12.1.0-2cross1) ... Setting up libatomic1-armel-cross (12.1.0-2cross1) ... Setting up perl (5.34.0-4) ... Setting up libubsan1-armel-cross (12.1.0-2cross1) ... Setting up libgssapi-krb5-2:amd64 (1.19.2-2+b2) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.21.8) ... Setting up autoconf (2.71-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up libsub-override-perl (0.09-2) ... Setting up libasan6-armel-cross (11.3.0-3cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtirpc3:amd64 (1.3.2-2) ... Setting up libfile-which-perl (1.27-1) ... Setting up libgcc-11-dev-armel-cross (11.3.0-3cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.7.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.21.8) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libstdc++-11-dev-armel-cross (11.3.0-3cross1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gcc-11-arm-linux-gnueabi (11.3.0-3cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libpython3.10-stdlib:amd64 (3.10.4-4+b1) ... Setting up g++-11-arm-linux-gnueabi (11.3.0-3cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up gcc-arm-linux-gnueabi (4:11.2.0-2) ... Setting up libc6-dev:amd64 (2.33-7) ... Setting up libpython3-stdlib:amd64 (3.10.4-1+b1) ... Setting up python3.10 (3.10.4-4+b1) ... Setting up libtool (2.4.7-4) ... Setting up python3 (3.10.4-1+b1) ... Setting up ncbi-blast+ (2.12.0+ds-3+b1) ... Setting up dh-autoreconf (20) ... Setting up g++-arm-linux-gnueabi (4:11.2.0-2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-11-dev:amd64 (11.3.0-3) ... Setting up g++-11 (11.3.0-3) ... Setting up debhelper (13.7.1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.9) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armel (12.9) ... Setting up libgcc-s1:armel (12.1.0-2) ... Setting up libc6:armel (2.33-7) ... Setting up libstdc++6:armel (12.1.0-2) ... Setting up libkeyutils1:armel (1.6.1-3) ... Setting up zlib1g:armel (1:1.2.11.dfsg-4) ... Setting up libcrypt1:armel (1:4.4.27-1.1) ... Setting up libcom-err2:armel (1.46.5-2) ... Setting up libgomp1:armel (12.1.0-2) ... Setting up libkrb5support0:armel (1.19.2-2+b2) ... Setting up libasan5:armel (9.4.0-5) ... Setting up libatomic1:armel (12.1.0-2) ... Setting up libk5crypto3:armel (1.19.2-2+b2) ... Setting up libubsan1:armel (12.1.0-2) ... Setting up libcrypt-dev:armel (1:4.4.27-1.1) ... Setting up cd-hit:armel (4.8.1-4) ... Setting up libssl3:armel (3.0.3-5) ... Setting up libgcc-9-dev:armel (9.4.0-5) ... Setting up libkrb5-3:armel (1.19.2-2+b2) ... Setting up libgssapi-krb5-2:armel (1.19.2-2+b2) ... Setting up libtirpc3:armel (1.3.2-2) ... Setting up libtirpc-dev:armel (1.3.2-2) ... Setting up libnsl2:armel (1.3.0-2) ... Setting up libnsl-dev:armel (1.3.0-2) ... Setting up libc6-dev:armel (2.33-7) ... Setting up libstdc++-9-dev:armel (9.4.0-5) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.33-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.38-4 dpkg-dev_1.21.8 g++-11_11.3.0-3 gcc-11_11.3.0-3 libc6-dev_2.33-7 libstdc++-11-dev_11.3.0-3 libstdc++-11-dev-armel-cross_11.3.0-3cross1 libstdc++-9-dev_9.4.0-5 libstdc++6_12.1.0-2 libstdc++6-armel-cross_12.1.0-2cross1 linux-libc-dev_5.17.6-1+b1 Package versions: adduser_3.121 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6+b1 binutils_2.38-4 binutils-arm-linux-gnueabi_2.38-4 binutils-common_2.38-4 binutils-x86-64-linux-gnu_2.38-4 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5 cd-hit_4.8.1-4 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.3.0-3 cpp-11-arm-linux-gnueabi_11.3.0-3cross1 cpp-8_8.4.0-7 cpp-arm-linux-gnueabi_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-armel_12.9 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.8 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.8 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 fdisk_2.38-4 file_1:5.41-4 findutils_4.9.0-3 g++_4:11.2.0-2 g++-11_11.3.0-3 g++-11-arm-linux-gnueabi_11.3.0-3cross1 g++-arm-linux-gnueabi_4:11.2.0-2 gcc_4:11.2.0-2 gcc-11_11.3.0-3 gcc-11-arm-linux-gnueabi_11.3.0-3cross1 gcc-11-arm-linux-gnueabi-base_11.3.0-3cross1 gcc-11-base_11.3.0-3 gcc-11-cross-base_11.3.0-3cross1 gcc-12-base_12.1.0-2 gcc-12-cross-base_12.1.0-2cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-5 gcc-arm-linux-gnueabi_4:11.2.0-2 gettext_0.21-6 gettext-base_0.21-6 gpgv_2.2.35-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.5.0 libarchive-zip-perl_1.68-1 libasan5_9.4.0-5 libasan6_11.3.0-3 libasan6-armel-cross_11.3.0-3cross1 libatomic1_12.1.0-2 libatomic1-armel-cross_12.1.0-2cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38-4 libblkid1_2.38-4 libbz2-1.0_1.0.8-5 libc-bin_2.33-7 libc-dev-bin_2.33-7 libc6_2.33-7 libc6-armel-cross_2.33-1cross1 libc6-dev_2.33-7 libc6-dev-armel-cross_2.33-1cross1 libcap-ng0_0.7.9-2.2+b2 libcap2_1:2.44-1 libcc1-0_12.1.0-2 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-4 libctf0_2.38-4 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ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-4 perl-base_5.34.0-4 perl-modules-5.28_5.28.1-6 perl-modules-5.34_5.34.0-4 po-debconf_1.0.21+nmu1 python3_3.10.4-1+b1 python3-minimal_3.10.4-1+b1 python3.10_3.10.4-4+b1 python3.10-minimal_3.10.4-4+b1 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 util-linux_2.38-4 util-linux-extra_2.38-4 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: provean Binary: provean Architecture: any Version: 1.1.5+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Andrius Merkys , Homepage: http://provean.jcvi.org Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/provean Vcs-Git: https://salsa.debian.org/med-team/provean.git Build-Depends: cd-hit, debhelper-compat (= 13), ncbi-blast+ Package-List: provean deb science optional arch=any Checksums-Sha1: 0e8149ee7c3900f801e8631ae66cb572b4d56989 22704 provean_1.1.5+ds.orig.tar.xz b61dc8b28f43ab497912be015187047d0370cee1 2220 provean_1.1.5+ds-2.debian.tar.xz Checksums-Sha256: fb9742e161251eeee034e8982e03c719bf9caa2b388fcb32eaefdf422ab3383b 22704 provean_1.1.5+ds.orig.tar.xz 9c0936ddb101f7f0a46d22c2c912c466cbd7544355300bd47e6f77221a448ed1 2220 provean_1.1.5+ds-2.debian.tar.xz Files: 7ab74c207de71dd63e3187013e1b4129 22704 provean_1.1.5+ds.orig.tar.xz adbe2b01aa22c3b26b26108ce69fcfdb 2220 provean_1.1.5+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmKEw6ARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEMiw/8DJcwRivHUvAn+8uTD1iADH/6Cy5Jqady 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signature: No public key dpkg-source: warning: cannot verify signature ./provean_1.1.5+ds-2.dsc dpkg-source: info: extracting provean in /<> dpkg-source: info: unpacking provean_1.1.5+ds.orig.tar.xz dpkg-source: info: unpacking provean_1.1.5+ds-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-7dfd59ef-a015-410b-b832-cd5d959834d0 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package provean dpkg-buildpackage: info: source version 1.1.5+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi configure: loading site script /etc/dpkg-cross/cross-config.armel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for arm-linux-gnueabi-g++... arm-linux-gnueabi-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabi-g++ accepts -g... yes checking for arm-linux-gnueabi-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabi-g++... none checking for psiblast... /usr/bin/psiblast checking for cd-hit... /usr/bin/cd-hit checking for blastdbcmd... /usr/bin/blastdbcmd checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o provean.o provean.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Common.o Common.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Options.o Options.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SequenceDB.o SequenceDB.cpp SequenceDB.cpp: In member function ‘int SequenceDB::SetSequencesFromFastaFile(std::string)’: SequenceDB.cpp:295:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 295 | fgets(buf, sizeof(buf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::SetOnlySequencesFromFastaFile(std::string)’: SequenceDB.cpp:652:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 652 | fgets(buf, sizeof(buf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:737:35: warning: ‘.help’ directive writing 5 bytes into a region of size between 1 and 65536 [-Wformat-overflow=] 737 | sprintf(help_filename, "%s.help", output_prefix); | ^~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:866, from /usr/arm-linux-gnueabi/include/c++/11/cstdio:42, from /usr/arm-linux-gnueabi/include/c++/11/ext/string_conversions.h:43, from /usr/arm-linux-gnueabi/include/c++/11/bits/basic_string.h:6608, from /usr/arm-linux-gnueabi/include/c++/11/string:55, from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_classes.h:40, from /usr/arm-linux-gnueabi/include/c++/11/bits/ios_base.h:41, from /usr/arm-linux-gnueabi/include/c++/11/ios:42, from /usr/arm-linux-gnueabi/include/c++/11/ostream:38, from /usr/arm-linux-gnueabi/include/c++/11/iostream:39, from SequenceDB.cpp:17: /usr/arm-linux-gnueabi/include/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 6 and 65541 bytes into a destination of size 65536 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp:738:41: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65530 [-Wformat-overflow=] 738 | sprintf(cdhit_command, "%s -h > %s", | ^~ 739 | p_options_->cdhit_command_.c_str(), 740 | help_filename); | ~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:866, from /usr/arm-linux-gnueabi/include/c++/11/cstdio:42, from /usr/arm-linux-gnueabi/include/c++/11/ext/string_conversions.h:43, from /usr/arm-linux-gnueabi/include/c++/11/bits/basic_string.h:6608, from /usr/arm-linux-gnueabi/include/c++/11/string:55, from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_classes.h:40, from /usr/arm-linux-gnueabi/include/c++/11/bits/ios_base.h:41, from /usr/arm-linux-gnueabi/include/c++/11/ios:42, from /usr/arm-linux-gnueabi/include/c++/11/ostream:38, from /usr/arm-linux-gnueabi/include/c++/11/iostream:39, from SequenceDB.cpp:17: /usr/arm-linux-gnueabi/include/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 65542) into a destination of size 65536 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp:776:53: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65528 [-Wformat-overflow=] 776 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d -bak 1 > %s.log", | ^~ ...... 779 | output_prefix, | ~~~~~~~~~~~~~ SequenceDB.cpp:776:40: note: assuming directive output of 4 bytes 776 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d -bak 1 > %s.log", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp:776:40: note: directive argument in the range [0, 42949672] In file included from /usr/arm-linux-gnueabi/include/stdio.h:866, from /usr/arm-linux-gnueabi/include/c++/11/cstdio:42, from /usr/arm-linux-gnueabi/include/c++/11/ext/string_conversions.h:43, from /usr/arm-linux-gnueabi/include/c++/11/bits/basic_string.h:6608, from /usr/arm-linux-gnueabi/include/c++/11/string:55, from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_classes.h:40, from /usr/arm-linux-gnueabi/include/c++/11/bits/ios_base.h:41, from /usr/arm-linux-gnueabi/include/c++/11/ios:42, from /usr/arm-linux-gnueabi/include/c++/11/ostream:38, from /usr/arm-linux-gnueabi/include/c++/11/iostream:39, from SequenceDB.cpp:17: /usr/arm-linux-gnueabi/include/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 55 or more bytes (assuming 131133) into a destination of size 65536 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp:785:53: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65528 [-Wformat-overflow=] 785 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d > %s.log", | ^~ ...... 788 | output_prefix, | ~~~~~~~~~~~~~ SequenceDB.cpp:785:40: note: assuming directive output of 4 bytes 785 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d > %s.log", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp:785:40: note: directive argument in the range [0, 42949672] In file included from /usr/arm-linux-gnueabi/include/stdio.h:866, from /usr/arm-linux-gnueabi/include/c++/11/cstdio:42, from /usr/arm-linux-gnueabi/include/c++/11/ext/string_conversions.h:43, from /usr/arm-linux-gnueabi/include/c++/11/bits/basic_string.h:6608, from /usr/arm-linux-gnueabi/include/c++/11/string:55, from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_classes.h:40, from /usr/arm-linux-gnueabi/include/c++/11/bits/ios_base.h:41, from /usr/arm-linux-gnueabi/include/c++/11/ios:42, from /usr/arm-linux-gnueabi/include/c++/11/ostream:38, from /usr/arm-linux-gnueabi/include/c++/11/iostream:39, from SequenceDB.cpp:17: /usr/arm-linux-gnueabi/include/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 48 or more bytes (assuming 131126) into a destination of size 65536 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp:830:38: warning: ‘.cluster.bak.clstr’ directive writing 18 bytes into a region of size between 1 and 65536 [-Wformat-overflow=] 830 | sprintf(cluster_filename, "%s.cluster.bak.clstr", output_prefix); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:866, from /usr/arm-linux-gnueabi/include/c++/11/cstdio:42, from /usr/arm-linux-gnueabi/include/c++/11/ext/string_conversions.h:43, from /usr/arm-linux-gnueabi/include/c++/11/bits/basic_string.h:6608, from /usr/arm-linux-gnueabi/include/c++/11/string:55, from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_classes.h:40, from /usr/arm-linux-gnueabi/include/c++/11/bits/ios_base.h:41, from /usr/arm-linux-gnueabi/include/c++/11/ios:42, from /usr/arm-linux-gnueabi/include/c++/11/ostream:38, from /usr/arm-linux-gnueabi/include/c++/11/iostream:39, from SequenceDB.cpp:17: /usr/arm-linux-gnueabi/include/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 19 and 65554 bytes into a destination of size 65536 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp:804:42: warning: ‘.log’ directive writing 4 bytes into a region of size between 1 and 65536 [-Wformat-overflow=] 804 | sprintf(log_filename, "%s.log", output_prefix); | ^~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:866, from /usr/arm-linux-gnueabi/include/c++/11/cstdio:42, from /usr/arm-linux-gnueabi/include/c++/11/ext/string_conversions.h:43, from /usr/arm-linux-gnueabi/include/c++/11/bits/basic_string.h:6608, from /usr/arm-linux-gnueabi/include/c++/11/string:55, from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_classes.h:40, from /usr/arm-linux-gnueabi/include/c++/11/bits/ios_base.h:41, from /usr/arm-linux-gnueabi/include/c++/11/ios:42, from /usr/arm-linux-gnueabi/include/c++/11/ostream:38, from /usr/arm-linux-gnueabi/include/c++/11/iostream:39, from SequenceDB.cpp:17: /usr/arm-linux-gnueabi/include/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 5 and 65540 bytes into a destination of size 65536 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘void SequenceDB::RunBlast(std::string, std::string, std::string)’: SequenceDB.cpp:1552:47: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=] 1552 | sprintf(blast_command, "%s -version > %s", p_options_->psiblast_command_.c_str(), blast_help); | ^~ ~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:866, from /usr/arm-linux-gnueabi/include/c++/11/cstdio:42, from /usr/arm-linux-gnueabi/include/c++/11/ext/string_conversions.h:43, from /usr/arm-linux-gnueabi/include/c++/11/bits/basic_string.h:6608, from /usr/arm-linux-gnueabi/include/c++/11/string:55, from /usr/arm-linux-gnueabi/include/c++/11/bits/locale_classes.h:40, from /usr/arm-linux-gnueabi/include/c++/11/bits/ios_base.h:41, from /usr/arm-linux-gnueabi/include/c++/11/ios:42, from /usr/arm-linux-gnueabi/include/c++/11/ostream:38, from /usr/arm-linux-gnueabi/include/c++/11/iostream:39, from SequenceDB.cpp:17: /usr/arm-linux-gnueabi/include/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output 13 or more bytes (assuming 65548) into a destination of size 65536 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:72, from /usr/arm-linux-gnueabi/include/c++/11/functional:62, from /usr/arm-linux-gnueabi/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:74, from SequenceDB.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Variant&}; _Tp = Variant; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:67, from /usr/arm-linux-gnueabi/include/c++/11/functional:62, from /usr/arm-linux-gnueabi/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:74, from SequenceDB.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h: In member function ‘int SequenceDB::AddVariant_HGVS(std::string)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algobase.h:71, from /usr/arm-linux-gnueabi/include/c++/11/bits/char_traits.h:39, from /usr/arm-linux-gnueabi/include/c++/11/ios:40, from /usr/arm-linux-gnueabi/include/c++/11/ostream:38, from /usr/arm-linux-gnueabi/include/c++/11/iostream:39, from SequenceDB.cpp:17: /usr/arm-linux-gnueabi/include/c++/11/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Variant, Variant)]’: /usr/arm-linux-gnueabi/include/c++/11/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 157 | operator()(_Iterator1 __it1, _Iterator2 __it2) | ^~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:67, from /usr/arm-linux-gnueabi/include/c++/11/functional:62, from /usr/arm-linux-gnueabi/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:74, from SequenceDB.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h: In member function ‘int SequenceDB::AddVariant_CSV(std::string)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/algorithm:62, from SequenceDB.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1861:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1861 | __final_insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1861:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:72, from /usr/arm-linux-gnueabi/include/c++/11/functional:62, from /usr/arm-linux-gnueabi/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:74, from SequenceDB.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Sequence&}; _Tp = Sequence; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/vector:67, from /usr/arm-linux-gnueabi/include/c++/11/functional:62, from /usr/arm-linux-gnueabi/include/c++/11/pstl/glue_algorithm_defs.h:13, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:74, from SequenceDB.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Sequence; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h: In member function ‘int SequenceDB::SetSequenceInfoFromBlastOut(std::string, int)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h: In member function ‘int SequenceDB::SetSequencesFromBlastOut(std::string, std::string, int)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h: In member function ‘int SequenceDB::SetSequencesFromFastaFile(std::string)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h: In member function ‘void SequenceDB::LoadSupportingSet(std::string)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:61, from /usr/arm-linux-gnueabi/include/c++/11/algorithm:62, from SequenceDB.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Variant; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/11/algorithm:62, from SequenceDB.cpp:18: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:82:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 82 | if (__comp(__a, __b)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:84:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 84 | if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:86:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:91:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 91 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:93:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 93 | else if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In member function ‘void SequenceDB::ComputeDeltaScores()’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1957:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1957 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In member function ‘void SequenceDB::PrintDeltaScores(FILE*, std::string)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1957:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1957 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h: In member function ‘void SequenceDB::PrintDeltaScores(FILE*)’: /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/11/bits/stl_algo.h:1957:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1957 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ScoreMatrix.o ScoreMatrix.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Sequence.o Sequence.cpp Sequence.cpp: In member function ‘bool Sequence::SetSequenceFromFastaFile(const char*, std::string)’: Sequence.cpp:100:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | fgets(buf, sizeof(buf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tables.o Tables.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Variant.o Variant.cpp arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -o provean provean.o Common.o Options.o SequenceDB.o ScoreMatrix.o Sequence.o Tables.o Variant.o make[3]: Leaving directory '/<>/src' Making all in scripts make[3]: Entering directory '/<>/scripts' sed -e 's,\[@\]PSIBLAST\[@\],/usr/bin/psiblast,g' -e 's,\[@\]CDHIT\[@\],/usr/bin/cd-hit,g' -e 's,\[@\]BLASTDB\[@\],,g' -e 's,\[@\]BLASTDBCMD\[@\],/usr/bin/blastdbcmd,g' -e 's,\[@\]VERSION\[@\],1.1.5,g' < ./provean.sh.in > provean.sh chmod +x provean.sh make[3]: Leaving directory '/<>/scripts' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/provean/ -a make -j1 install DESTDIR=/<>/provean-1.1.5\+ds/debian/provean AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/provean/usr/bin' /usr/bin/install -c provean '/<>/debian/provean/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in scripts make[2]: Entering directory '/<>/scripts' make[3]: Entering directory '/<>/scripts' /bin/mkdir -p '/<>/debian/provean/usr/bin' /usr/bin/install -c provean.sh '/<>/debian/provean/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/scripts' make[2]: Leaving directory '/<>/scripts' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/provean/usr/share/data/provean/examples' /usr/bin/install -c -m 644 P04637.fasta P04637.var '/<>/debian/provean/usr/share/data/provean/examples' make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/provean/usr/share/doc/provean' /usr/bin/install -c -m 644 README LICENSE '/<>/debian/provean/usr/share/doc/provean' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rm debian/provean/usr/bin/provean.sh make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/provean/usr/bin/provean contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'provean' in '../provean_1.1.5+ds-2_armel.deb'. dpkg-deb: building package 'provean-dbgsym' in '../provean-dbgsym_1.1.5+ds-2_armel.deb'. dpkg-genbuildinfo --build=any -O../provean_1.1.5+ds-2_armel.buildinfo dpkg-genchanges --build=any -O../provean_1.1.5+ds-2_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-05-26T07:48:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ provean_1.1.5+ds-2_armel.changes: --------------------------------- Format: 1.8 Date: Wed, 18 May 2022 11:57:03 +0200 Source: provean Binary: provean provean-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.1.5+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: provean - Protein Variation Effect Analyzer Changes: provean (1.1.5+ds-2) unstable; urgency=medium . * Team upload. * Source-only upload * Standards-Version: 4.6.1 (routine-update) * Add salsa-ci file (routine-update) Checksums-Sha1: 1dbfb715b3a2c8b33467f2b721779172b05950c7 458564 provean-dbgsym_1.1.5+ds-2_armel.deb 40971d6a3f6493412960ccdd7392b9d41773b398 5575 provean_1.1.5+ds-2_armel.buildinfo c25191230d991a0fa8048191aa0173b994e6f95a 46504 provean_1.1.5+ds-2_armel.deb Checksums-Sha256: 1afa7522bc8ed4e0465b1d6c74adfd0fb7759c9d409df8261a119ce15e3ef922 458564 provean-dbgsym_1.1.5+ds-2_armel.deb fded73ada7665c947306b2c1f258168716e3194c1fc6b3327a43c9703eb1650e 5575 provean_1.1.5+ds-2_armel.buildinfo b322f51c650b53ac7491bb14d38a52e0722380eeac0fa4a826c122d9f2409a88 46504 provean_1.1.5+ds-2_armel.deb Files: 9f474d95cdd5a15b6ff5957b974a927d 458564 debug optional provean-dbgsym_1.1.5+ds-2_armel.deb fdadf7c61fbbbe2b73e1815aa494c395 5575 science optional provean_1.1.5+ds-2_armel.buildinfo 30453fe1738cdfd642c996094d4f7374 46504 science optional provean_1.1.5+ds-2_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: provean Binary: provean provean-dbgsym Architecture: armel Version: 1.1.5+ds-2 Checksums-Md5: 9f474d95cdd5a15b6ff5957b974a927d 458564 provean-dbgsym_1.1.5+ds-2_armel.deb 30453fe1738cdfd642c996094d4f7374 46504 provean_1.1.5+ds-2_armel.deb Checksums-Sha1: 1dbfb715b3a2c8b33467f2b721779172b05950c7 458564 provean-dbgsym_1.1.5+ds-2_armel.deb c25191230d991a0fa8048191aa0173b994e6f95a 46504 provean_1.1.5+ds-2_armel.deb Checksums-Sha256: 1afa7522bc8ed4e0465b1d6c74adfd0fb7759c9d409df8261a119ce15e3ef922 458564 provean-dbgsym_1.1.5+ds-2_armel.deb b322f51c650b53ac7491bb14d38a52e0722380eeac0fa4a826c122d9f2409a88 46504 provean_1.1.5+ds-2_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 26 May 2022 07:48:29 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.5.52), bash (= 5.1-6+b1), binutils (= 2.38-4), binutils-common (= 2.38-4), binutils-x86-64-linux-gnu (= 2.38-4), bsdextrautils (= 2.38-4), bsdutils (= 1:2.38-4), build-essential (= 12.9), bzip2 (= 1.0.8-5), cd-hit (= 4.8.1-4), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.3.0-3), dash (= 0.5.11+git20210903+057cd650a4ed-8), debconf (= 1.5.79), debhelper (= 13.7.1), debianutils (= 5.7-0.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.8), dpkg-dev (= 1.21.8), dwz (= 0.14-1), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:11.2.0-2), g++-11 (= 11.3.0-3), gcc (= 4:11.2.0-2), gcc-11 (= 11.3.0-3), gcc-11-base (= 11.3.0-3), gcc-12-base (= 12.1.0-2), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3), libatomic1 (= 12.1.0-2), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbinutils (= 2.38-4), libblkid1 (= 2.38-4), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-7), libc-dev-bin (= 2.33-7), libc6 (= 2.33-7), libc6-dev (= 2.33-7), libcap-ng0 (= 0.7.9-2.2+b2), libcap2 (= 1:2.44-1), libcc1-0 (= 12.1.0-2), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.27-1.1), libcrypt1 (= 1:4.4.27-1.1), libctf-nobfd0 (= 2.38-4), libctf0 (= 2.38-4), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.262), libdebhelper-perl (= 13.7.1), libdpkg-perl (= 1.21.8), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-3), libgcc-s1 (= 12.1.0-2), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3), libgomp1 (= 12.1.0-2), libgpg-error0 (= 1.45-2), libgssapi-krb5-2 (= 1.19.2-2+b2), libicu71 (= 71.1-3), libisl23 (= 0.24-2), libitm1 (= 12.1.0-2), libk5crypto3 (= 1.19.2-2+b2), libkeyutils1 (= 1.6.1-3), libkrb5-3 (= 1.19.2-2+b2), libkrb5support0 (= 1.19.2-2+b2), liblmdb0 (= 0.9.24-1), liblsan0 (= 12.1.0-2), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmbedcrypto7 (= 2.28.0-2), libmbedtls14 (= 2.28.0-2), libmbedx509-1 (= 2.28.0-2), libmount1 (= 2.38-4), libmpc3 (= 1.2.1-2), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.3+20220423-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-13), libpam-modules-bin (= 1.4.0-13), libpam-runtime (= 1.4.0-13), libpam0g (= 1.4.0-13), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-4), libpipeline1 (= 1.5.6-1), libpython3-stdlib (= 3.10.4-1+b1), libpython3.10-minimal (= 3.10.4-4+b1), libpython3.10-stdlib (= 3.10.4-4+b1), libquadmath0 (= 12.1.0-2), libreadline8 (= 8.1.2-1.2), libseccomp2 (= 2.5.4-1), libselinux1 (= 3.3-1+b2), libsigsegv2 (= 2.14-1), libsmartcols1 (= 2.38-4), libsqlite3-0 (= 3.38.5-1), libssl3 (= 3.0.3-5), libstdc++-11-dev (= 11.3.0-3), libstdc++6 (= 12.1.0-2), libsub-override-perl (= 0.09-2), libsystemd0 (= 251-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3), libubsan1 (= 12.1.0-2), libuchardet0 (= 0.0.7-1), libudev1 (= 251-2), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.17.6-1+b1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3+b1), media-types (= 8.0.0), ncbi-blast+ (= 2.12.0+ds-3+b1), ncbi-data (= 6.1.20170106+dfsg1-9), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.34.0-4), perl-base (= 5.34.0-4), perl-modules-5.34 (= 5.34.0-4), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.4-1+b1), python3-minimal (= 3.10.4-1+b1), python3.10 (= 3.10.4-4+b1), python3.10-minimal (= 3.10.4-4+b1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.03-1), tar (= 1.34+dfsg-1), util-linux (= 2.38-4), util-linux-extra (= 2.38-4), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1652867823" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ provean-dbgsym_1.1.5+ds-2_armel.deb ----------------------------------- new Debian package, version 2.0. size 458564 bytes: control archive=540 bytes. 376 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: provean-dbgsym Source: provean Version: 1.1.5+ds-2 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 475 Depends: provean (= 1.1.5+ds-2) Section: debug Priority: optional Description: debug symbols for provean Build-Ids: 7a0c8a2fc2a6b2abdc02c4fea88c02f104195fb3 drwxr-xr-x root/root 0 2022-05-18 09:57 ./ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/debug/.build-id/7a/ -rw-r--r-- root/root 475588 2022-05-18 09:57 ./usr/lib/debug/.build-id/7a/0c8a2fc2a6b2abdc02c4fea88c02f104195fb3.debug drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-05-18 09:57 ./usr/share/doc/provean-dbgsym -> provean provean_1.1.5+ds-2_armel.deb ---------------------------- new Debian package, version 2.0. size 46504 bytes: control archive=1128 bytes. 1031 bytes, 24 lines control 544 bytes, 8 lines md5sums Package: provean Version: 1.1.5+ds-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 132 Depends: libc6 (>= 2.7), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://provean.jcvi.org Description: Protein Variation Effect Analyzer PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein. . PROVEAN is useful for filtering sequence variants to identify nonsynonymous or indel variants that are predicted to be functionally important. . The performance of PROVEAN is comparable to popular tools such as SIFT or PolyPhen-2. . A fast computation approach to obtain pairwise sequence alignment scores enabled the generation of precomputed PROVEAN predictions for 20 single AA substitutions and a single AA deletion at every amino acid position of all protein sequences in human and mouse. drwxr-xr-x root/root 0 2022-05-18 09:57 ./ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/bin/ -rwxr-xr-x root/root 113196 2022-05-18 09:57 ./usr/bin/provean drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/data/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/data/provean/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/data/provean/examples/ -rw-r--r-- root/root 482 2022-05-18 09:57 ./usr/share/data/provean/examples/P04637.fasta -rw-r--r-- root/root 51 2022-05-18 09:57 ./usr/share/data/provean/examples/P04637.var drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/doc/provean/ -rw-r--r-- root/root 713 2022-05-18 09:57 ./usr/share/doc/provean/LICENSE -rw-r--r-- root/root 2709 2022-05-18 09:57 ./usr/share/doc/provean/README.gz -rw-r--r-- root/root 268 2022-05-18 09:57 ./usr/share/doc/provean/changelog.Debian.gz -rw-r--r-- root/root 647 2022-05-18 09:57 ./usr/share/doc/provean/copyright drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/man/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/man/man1/ -rw-r--r-- root/root 358 2022-05-18 09:57 ./usr/share/man/man1/provean.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [548 B] Get:5 copy:/<>/apt_archive ./ Packages [635 B] Fetched 2146 B in 0s (82.2 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:armel t1utils unzip 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 6818 kB of archives. After this operation, 21.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-3 [51.3 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.35-2 [577 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.35-2 [960 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40+b1 [72.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b4 [11.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b3 [16.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b4 [25.8 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b4 [45.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b8 [37.7 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b2 [15.5 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.28-1 [17.3 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b2 [25.7 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.28-1 [130 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2+b1 [40.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-1 [35.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-1+b6 [104 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b3 [26.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b4 [28.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-2 [7448 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-2 [8992 B] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b2 [173 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b4 [12.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b2 [13.9 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b8 [17.5 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.009-1+b1 [12.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1+b1 [46.9 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.023+ds-1 [99.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.023+ds-1 [104 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.23-1 [52.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.27-1 [28.5 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b3 [27.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b9 [8800 B] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1+b1 [13.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-1+b1 [197 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b4 [75.8 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b3 [20.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.10-1 [91.0 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1+b1 [35.9 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.23-3 [90.0 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6818 kB in 0s (27.9 MB/s) Selecting previously unselected package diffstat. (Reading database ... 22236 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-3_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-3) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.35-2_amd64.deb ... Unpacking gpgconf (2.2.35-2) ... Selecting previously unselected package gpg. Preparing to unpack .../03-gpg_2.2.35-2_amd64.deb ... Unpacking gpg (2.2.35-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../04-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../05-libapt-pkg-perl_0.1.40+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../06-libb-hooks-op-check-perl_0.22-1+b4_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b4) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../07-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../08-libdevel-callchecker-perl_0.008-1+b3_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b3) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../09-libparams-classify-perl_0.015-1+b4_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b4) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../10-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. 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Setting up libtry-tiny-perl (0.31-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b4) ... Setting up libassuan0:amd64 (2.5.5-3) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:amd64 (4.023+ds-1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-1+b6) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.23-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up libio-prompt-tiny-perl (0.003-1) ... Setting up lzip (1.23-3) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b4) ... Setting up libb-hooks-op-check-perl (0.22-1+b4) ... Setting up liblist-moreutils-xs-perl (0.430-2+b1) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.35-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b8) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b3) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b9) ... Setting up libperlio-gzip-perl (0.19-1+b8) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.023+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.10-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.35-2) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b4) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b4) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.114.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.33-7) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 6328 Build-Time: 20 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 27 Job: provean_1.1.5+ds-2 Lintian: pass Machine Architecture: amd64 Package: provean Package-Time: 57 Source-Version: 1.1.5+ds-2 Space: 6328 Status: successful Version: 1.1.5+ds-2 -------------------------------------------------------------------------------- Finished at 2022-05-26T07:48:29Z Build needed 00:00:57, 6328k disk space