sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | provean 1.1.5+ds-2 (armel) Thu, 11 Jan 2024 05:20:32 +0000 | +==============================================================================+ Package: provean Version: 1.1.5+ds-2 Source Version: 1.1.5+ds-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-2b6af1e2-46d0-4975-8f6e-36ed62778abd' with '<>' I: NOTICE: Log filtering will replace 'build/provean-mk7T3H/resolver-27lR8N' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-11-0244.20-F-2024-01-11-0244.20.pdiff [24.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-11-0244.20-F-2024-01-11-0244.20.pdiff [65.8 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-11-0244.20-F-2024-01-11-0244.20.pdiff [24.0 kB] Get:6 http://localhost:3142/debian sid/main armel Packages [9151 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-11-0244.20-F-2024-01-11-0244.20.pdiff [65.8 kB] Fetched 9566 kB in 2s (4631 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'provean' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/provean.git Please use: git clone https://salsa.debian.org/med-team/provean.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 26.9 kB of source archives. Get:1 http://localhost:3142/debian sid/main provean 1.1.5+ds-2 (dsc) [1957 B] Get:2 http://localhost:3142/debian sid/main provean 1.1.5+ds-2 (tar) [22.7 kB] Get:3 http://localhost:3142/debian sid/main provean 1.1.5+ds-2 (diff) [2220 B] Fetched 26.9 kB in 1s (34.1 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/provean-mk7T3H/provean-1.1.5+ds' with '<>' I: NOTICE: Log filtering will replace 'build/provean-mk7T3H' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: cd-hit, debhelper-compat (= 13), ncbi-blast+, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: cd-hit, debhelper-compat (= 13), ncbi-blast+, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [735 B] Get:5 copy:/<>/apt_archive ./ Packages [778 B] Fetched 2122 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cd-hit:armel cpp-13-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-13-arm-linux-gnueabi gcc-13-arm-linux-gnueabi-base gcc-13-base:armel gcc-13-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-13-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu72 libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl-dev:armel libnsl2:armel libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 libssl3:armel libstdc++-11-dev:armel libstdc++-13-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross m4 man-db media-types ncbi-blast+ ncbi-data netbase po-debconf python3 python3-minimal python3.11 python3.11-minimal readline-common sensible-utils ucf zlib1g:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel krb5-doc:armel krb5-user:armel libstdc++-11-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl krb5-locales:armel libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cd-hit:armel cpp-13-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-13-arm-linux-gnueabi gcc-13-arm-linux-gnueabi-base gcc-13-base:armel gcc-13-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-13-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu72 libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl-dev:armel libnsl2:armel libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 libssl3:armel libstdc++-11-dev:armel libstdc++-13-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross m4 man-db media-types ncbi-blast+ ncbi-data netbase po-debconf python3 python3-minimal python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b1 [15.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.7-2 [816 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-2+b2 [99.4 kB] Get:5 http://localhost:3142/debian sid/main amd64 python3.11-minimal amd64 3.11.7-2 [2035 kB] Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:7 http://localhost:3142/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4+20231209-1 [135 kB] Get:10 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:11 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:12 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http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:24 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get:25 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Get:26 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-1 [1402 kB] Get:27 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:28 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:29 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:30 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:31 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:32 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:33 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabi amd64 2.41.50.20231227-1 [3221 kB] Get:34 http://localhost:3142/debian sid/main armel gcc-13-base armel 13.2.0-9 [41.5 kB] Get:35 http://localhost:3142/debian sid/main armel libgcc-s1 armel 13.2.0-9 [38.3 kB] Get:36 http://localhost:3142/debian sid/main armel libc6 armel 2.37-13 [2140 kB] Get:37 http://localhost:3142/debian sid/main armel libgomp1 armel 13.2.0-9 [107 kB] Get:38 http://localhost:3142/debian sid/main armel libstdc++6 armel 13.2.0-9 [580 kB] Get:39 http://localhost:3142/debian sid/main armel zlib1g armel 1:1.3.dfsg-3 [74.3 kB] Get:40 http://localhost:3142/debian sid/main armel cd-hit armel 4.8.1-4 [503 kB] Get:41 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabi-base amd64 13.2.0-7cross2 [41.1 kB] Get:42 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabi amd64 13.2.0-7cross2 [9284 kB] Get:43 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabi amd64 4:13.2.1-2 [3944 B] Get:44 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:45 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base-ports all 13.2.0-7cross2 [36.6 kB] Get:46 http://localhost:3142/debian sid/main amd64 libc6-armel-cross all 2.37-12cross1 [884 kB] Get:47 http://localhost:3142/debian sid/main amd64 libgcc-s1-armel-cross all 13.2.0-7cross2 [38.3 kB] Get:48 http://localhost:3142/debian sid/main amd64 libgomp1-armel-cross all 13.2.0-7cross2 [105 kB] Get:49 http://localhost:3142/debian sid/main amd64 libatomic1-armel-cross all 13.2.0-7cross2 [9120 B] Get:50 http://localhost:3142/debian sid/main amd64 libasan8-armel-cross all 13.2.0-7cross2 [2382 kB] Get:51 http://localhost:3142/debian sid/main amd64 libstdc++6-armel-cross all 13.2.0-7cross2 [534 kB] Get:52 http://localhost:3142/debian sid/main amd64 libubsan1-armel-cross all 13.2.0-7cross2 [965 kB] Get:53 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-armel-cross all 13.2.0-7cross2 [775 kB] Get:54 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabi amd64 13.2.0-7cross2 [18.2 MB] Get:55 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabi amd64 4:13.2.1-2 [1476 B] Get:56 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armel-cross all 6.5.8-1cross1 [1975 kB] Get:57 http://localhost:3142/debian sid/main amd64 libc6-dev-armel-cross all 2.37-12cross1 [1292 kB] Get:58 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-armel-cross all 13.2.0-7cross2 [2215 kB] Get:59 http://localhost:3142/debian sid/main amd64 g++-13-arm-linux-gnueabi amd64 13.2.0-7cross2 [10.2 MB] Get:60 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabi amd64 4:13.2.1-2 [1180 B] Get:61 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:62 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:63 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:68 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB] Get:69 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:70 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:71 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:72 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:73 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:74 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:75 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:76 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armel all 12.10 [3484 B] Get:77 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.9 [82.3 kB] Get:78 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:79 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:80 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:81 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:82 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:83 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:84 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:85 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:86 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:87 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:88 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:89 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.9 [956 kB] Get:90 http://localhost:3142/debian sid/main armel gcc-11-base armel 11.4.0-7 [40.3 kB] Get:91 http://localhost:3142/debian sid/main armel libasan6 armel 11.4.0-7 [1944 kB] Get:92 http://localhost:3142/debian sid/main armel libatomic1 armel 13.2.0-9 [9388 B] Get:93 http://localhost:3142/debian sid/main armel libcrypt1 armel 1:4.4.36-4 [96.9 kB] Get:94 http://localhost:3142/debian sid/main armel libcrypt-dev armel 1:4.4.36-4 [126 kB] Get:95 http://localhost:3142/debian sid/main armel libkrb5support0 armel 1.20.1-5 [30.0 kB] Get:96 http://localhost:3142/debian sid/main armel libcom-err2 armel 1.47.0-2+b1 [19.4 kB] Get:97 http://localhost:3142/debian sid/main armel libk5crypto3 armel 1.20.1-5 [74.6 kB] Get:98 http://localhost:3142/debian sid/main armel libkeyutils1 armel 1.6.3-2+b2 [8128 B] Get:99 http://localhost:3142/debian sid/main armel libssl3 armel 3.1.4-2 [1644 kB] Get:100 http://localhost:3142/debian sid/main armel libkrb5-3 armel 1.20.1-5 [285 kB] Get:101 http://localhost:3142/debian sid/main armel libgssapi-krb5-2 armel 1.20.1-5 [111 kB] Get:102 http://localhost:3142/debian sid/main armel libtirpc3 armel 1.3.4+ds-1 [69.4 kB] Get:103 http://localhost:3142/debian sid/main armel libnsl2 armel 1.3.0-3 [33.2 kB] Get:104 http://localhost:3142/debian sid/main armel libtirpc-dev armel 1.3.4+ds-1 [180 kB] Get:105 http://localhost:3142/debian sid/main armel libnsl-dev armel 1.3.0-3 [61.6 kB] Get:106 http://localhost:3142/debian sid/main armel libc6-dev armel 2.37-13 [1294 kB] Get:107 http://localhost:3142/debian sid/main armel libubsan1 armel 13.2.0-9 [967 kB] Get:108 http://localhost:3142/debian sid/main armel libgcc-11-dev armel 11.4.0-7 [702 kB] Get:109 http://localhost:3142/debian sid/main amd64 liblmdb0 amd64 0.9.31-1 [44.3 kB] Get:110 http://localhost:3142/debian sid/main amd64 libmbedcrypto7 amd64 2.28.6-1 [279 kB] Get:111 http://localhost:3142/debian sid/main amd64 libmbedx509-1 amd64 2.28.6-1 [130 kB] Get:112 http://localhost:3142/debian sid/main amd64 libmbedtls14 amd64 2.28.6-1 [165 kB] Get:113 http://localhost:3142/debian sid/main armel libstdc++-11-dev armel 11.4.0-7 [1989 kB] Get:114 http://localhost:3142/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:115 http://localhost:3142/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-4 [12.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 109 MB in 1s (185 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 16260 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.7-2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.7-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-2+b2_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-2+b2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-2_amd64.deb ... Unpacking python3.11-minimal (3.11.7-2) ... Setting up libpython3.11-minimal:amd64 (3.11.7-2) ... Setting up libexpat1:amd64 (2.5.0-2+b2) ... Setting up python3.11-minimal (3.11.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 16592 files and directories currently installed.) 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Setting up libsqlite3-0:amd64 (3.44.2-1) ... Setting up libmagic1:amd64 (1:5.45-2+b1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up gcc-13-arm-linux-gnueabi-base:amd64 (13.2.0-7cross2) ... Setting up file (1:5.45-2+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up linux-libc-dev-armel-cross (6.5.8-1cross1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:armel (13.2.0-9) ... Setting up libmbedcrypto7:amd64 (2.28.6-1) ... Setting up autopoint (0.21-14) ... Setting up libncursesw6:amd64 (6.4+20231209-1) ... Setting up autoconf (2.71-3) ... Setting up libc6-armel-cross (2.37-12cross1) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libc6-dev-armel-cross (2.37-12cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up gcc-13-cross-base-ports (13.2.0-7cross2) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up cpp-13-arm-linux-gnueabi (13.2.0-7cross2) ... Setting up libgomp1-armel-cross (13.2.0-7cross2) ... Setting up libmbedx509-1:amd64 (2.28.6-1) ... Setting up libmbedtls14:amd64 (2.28.6-1) ... Setting up libtool (2.4.7-7) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up libgcc-s1-armel-cross (13.2.0-7cross2) ... Setting up libstdc++6-armel-cross (13.2.0-7cross2) ... Setting up libatomic1-armel-cross (13.2.0-7cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-arm-linux-gnueabi (4:13.2.1-2) ... Setting up libubsan1-armel-cross (13.2.0-7cross2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libasan8-armel-cross (13.2.0-7cross2) ... Setting up libgcc-13-dev-armel-cross (13.2.0-7cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.7-2) ... Setting up gcc-13-arm-linux-gnueabi (13.2.0-7cross2) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-armel-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-arm-linux-gnueabi (4:13.2.1-2) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.7-2) ... Setting up g++-13-arm-linux-gnueabi (13.2.0-7cross2) ... Setting up debhelper (13.11.9) ... Setting up python3 (3.11.6-1) ... Setting up ncbi-blast+ (2.12.0+ds-4) ... Setting up g++-arm-linux-gnueabi (4:13.2.1-2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armel (12.10) ... Setting up libgcc-s1:armel (13.2.0-9) ... Setting up libc6:armel (2.37-13) ... Setting up libstdc++6:armel (13.2.0-9) ... Setting up libkeyutils1:armel (1.6.3-2+b2) ... Setting up zlib1g:armel (1:1.3.dfsg-3) ... Setting up libcrypt1:armel (1:4.4.36-4) ... Setting up libcom-err2:armel (1.47.0-2+b1) ... Setting up libgomp1:armel (13.2.0-9) ... Setting up libasan6:armel (11.4.0-7) ... Setting up libkrb5support0:armel (1.20.1-5) ... Setting up libatomic1:armel (13.2.0-9) ... Setting up libk5crypto3:armel (1.20.1-5) ... Setting up libubsan1:armel (13.2.0-9) ... Setting up libgcc-11-dev:armel (11.4.0-7) ... Setting up libcrypt-dev:armel (1:4.4.36-4) ... Setting up cd-hit:armel (4.8.1-4) ... Setting up libssl3:armel (3.1.4-2) ... Setting up libkrb5-3:armel (1.20.1-5) ... Setting up libgssapi-krb5-2:armel (1.20.1-5) ... Setting up libtirpc3:armel (1.3.4+ds-1) ... Setting up libtirpc-dev:armel (1.3.4+ds-1) ... Setting up libnsl2:armel (1.3.0-3) ... Setting up libnsl-dev:armel (1.3.0-3) ... Setting up libc6-dev:armel (2.37-13) ... Setting up libstdc++-11-dev:armel (11.4.0-7) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231227-1 dpkg-dev_1.22.2 g++-11_11.4.0-7 g++-13_13.2.0-9 gcc-11_11.4.0-7 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-armel-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-armel-cross_13.2.0-7cross2 linux-libc-dev_6.6.9-1 Package versions: adduser_3.137 apt_2.7.8 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.50.20231227-1 binutils-arm-linux-gnueabi_2.41.50.20231227-1 binutils-common_2.41.50.20231227-1 binutils-x86-64-linux-gnu_2.41.50.20231227-1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 cd-hit_4.8.1-4 coreutils_9.4-3+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-9 cpp-13-arm-linux-gnueabi_13.2.0-7cross2 cpp-arm-linux-gnueabi_4:13.2.1-2 cross-config_2.6.20 crossbuild-essential-armel_12.10 dash_0.5.12-6 debconf_1.5.83 debhelper_13.11.9 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1+b1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-9 g++-13-arm-linux-gnueabi_13.2.0-7cross2 g++-arm-linux-gnueabi_4:13.2.1-2 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-13 gcc-13_13.2.0-9 gcc-13-arm-linux-gnueabi_13.2.0-7cross2 gcc-13-arm-linux-gnueabi-base_13.2.0-7cross2 gcc-13-base_13.2.0-9 gcc-13-cross-base-ports_13.2.0-7cross2 gcc-9-base_9.5.0-4 gcc-arm-linux-gnueabi_4:13.2.1-2 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-4 libapt-pkg6.0_2.7.8 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_13.2.0-9 libasan8-armel-cross_13.2.0-7cross2 libatomic1_13.2.0-9 libatomic1-armel-cross_13.2.0-7cross2 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231227-1 libblkid1_2.39.3-6 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-armel-cross_2.37-12cross1 libc6-dev_2.37-13 libc6-dev-armel-cross_2.37-12cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4+b2 libcc1-0_13.2.0-9 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41.50.20231227-1 libctf0_2.41.50.20231227-1 libdb5.3_5.3.28+dfsg2-4+b1 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.2 libelf1_0.190-1+b1 libexpat1_2.5.0-2+b2 libext2fs2_1.47.0-2+b1 libfakeroot_1.32.2-1+b1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-7 libgcc-13-dev_13.2.0-9 libgcc-13-dev-armel-cross_13.2.0-7cross2 libgcc-s1_13.2.0-9 libgcc-s1-armel-cross_13.2.0-7cross2 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-9 libgomp1-armel-cross_13.2.0-7cross2 libgpg-error0_1.47-3 libgprofng0_2.41.50.20231227-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhwasan0_13.2.0-9 libicu72_72.1-4 libidn2-0_2.3.4-1+b2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 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login_1:4.13+dfsg1-3+b1 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.3-6 ncbi-blast+_2.12.0+ds-4 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 netbase_6.4 passwd_1:4.13+dfsg1-3+b1 patch_2.7.6-7 perl_5.38.2-2 perl-base_5.38.2-2 perl-modules-5.34_5.34.0-5 perl-modules-5.38_5.38.2-2 po-debconf_1.0.21+nmu1 python3_3.11.6-1 python3-minimal_3.11.6-1 python3.11_3.11.7-2 python3.11-minimal_3.11.7-2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.35+dfsg-2 tzdata_2023d-1 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: provean Binary: provean Architecture: any Version: 1.1.5+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Andrius Merkys , Homepage: http://provean.jcvi.org Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/provean Vcs-Git: https://salsa.debian.org/med-team/provean.git Build-Depends: cd-hit, debhelper-compat (= 13), ncbi-blast+ Package-List: provean deb science optional arch=any Checksums-Sha1: 0e8149ee7c3900f801e8631ae66cb572b4d56989 22704 provean_1.1.5+ds.orig.tar.xz b61dc8b28f43ab497912be015187047d0370cee1 2220 provean_1.1.5+ds-2.debian.tar.xz Checksums-Sha256: fb9742e161251eeee034e8982e03c719bf9caa2b388fcb32eaefdf422ab3383b 22704 provean_1.1.5+ds.orig.tar.xz 9c0936ddb101f7f0a46d22c2c912c466cbd7544355300bd47e6f77221a448ed1 2220 provean_1.1.5+ds-2.debian.tar.xz Files: 7ab74c207de71dd63e3187013e1b4129 22704 provean_1.1.5+ds.orig.tar.xz adbe2b01aa22c3b26b26108ce69fcfdb 2220 provean_1.1.5+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmKEw6ARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEMiw/8DJcwRivHUvAn+8uTD1iADH/6Cy5Jqady vVG+17j3b27T2EokNKE/tleUZk4NSA4jmFuXEIjN8jx7qs4ieVgVMxRXshwtNP76 Nk2owDDOxI5cJe/mkfQ90hNCLDKoRCLFi+YEDH3Ndhh0ILdLPK8X2g+XmiGcB3Em MuuCnGx1TifACXgOPEfN9v0xTgN8+87YoqqJH5Jho87tRUoOmWQxT15uFSqXdzFi XfyYB1ZVKC04Ic7ouaj14Q68kkc7nM3yXejUUuQjT1EnO7BSH4JkIUHEBe5khtov PrPjibMEBvjilPYYVkAuTf5D6tFmw+YpRyStKzZSYYQVwvxVSkfzeNkHySekCVyZ rguZCcXUob5LtzdZrhIpSihYeXbPuFLYJwjunWx1LZgiurn4gb+G9jA3fK1ElChS tKoOHksWbgWdXM72x+EJUd+wmpa/wwQY94I4cBbopOXW5U8PdHal9+Cgl3wkzJl5 2F388zBdQbi51l0XFjw0gxD67M/lYgj9PdgUh+dCV3ZxlgqMYNaYvaXZyNvybKVa 91NglnBtj8COFLBEDadAdv0pkOztWQ1juhbcuRsWghOOgjb/eJbjR+TzNDaC7Wcw X8zuk71A5r4ZtyzlW/0O9mE0fri1BN6Gy9m8mRecQqThCpdioM3ZcGpVc74v8jxU MVbDnzlpir0= =ThI/ -----END PGP SIGNATURE----- gpgv: Signature made Wed May 18 10:00:00 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./provean_1.1.5+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting provean in /<> dpkg-source: info: unpacking provean_1.1.5+ds.orig.tar.xz dpkg-source: info: unpacking provean_1.1.5+ds-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.seYsY6Bl65/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-2b6af1e2-46d0-4975-8f6e-36ed62778abd SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package provean dpkg-buildpackage: info: source version 1.1.5+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi configure: loading site script /etc/dpkg-cross/cross-config.armel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for arm-linux-gnueabi-g++... arm-linux-gnueabi-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabi-g++ accepts -g... yes checking for arm-linux-gnueabi-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabi-g++... none checking for psiblast... /usr/bin/psiblast checking for cd-hit... /usr/bin/cd-hit checking for blastdbcmd... /usr/bin/blastdbcmd checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o provean.o provean.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Common.o Common.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Options.o Options.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o SequenceDB.o SequenceDB.cpp SequenceDB.cpp: In member function ‘int SequenceDB::SetSequencesFromFastaFile(std::string)’: SequenceDB.cpp:295:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 295 | fgets(buf, sizeof(buf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::SetOnlySequencesFromFastaFile(std::string)’: SequenceDB.cpp:652:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 652 | fgets(buf, sizeof(buf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algobase.h:71, from /usr/arm-linux-gnueabi/include/c++/13/string:51, from /usr/arm-linux-gnueabi/include/c++/13/bits/locale_classes.h:40, from /usr/arm-linux-gnueabi/include/c++/13/bits/ios_base.h:41, from /usr/arm-linux-gnueabi/include/c++/13/ios:44, from /usr/arm-linux-gnueabi/include/c++/13/ostream:40, from /usr/arm-linux-gnueabi/include/c++/13/iostream:41, from SequenceDB.cpp:17: /usr/arm-linux-gnueabi/include/c++/13/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Variant, Variant)]’: /usr/arm-linux-gnueabi/include/c++/13/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 157 | operator()(_Iterator1 __it1, _Iterator2 __it2) | ^~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:737:35: warning: ‘.help’ directive writing 5 bytes into a region of size between 1 and 65536 [-Wformat-overflow=] 737 | sprintf(help_filename, "%s.help", output_prefix); | ^~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:906, from /usr/arm-linux-gnueabi/include/c++/13/cstdio:42, from /usr/arm-linux-gnueabi/include/c++/13/ext/string_conversions.h:45, from /usr/arm-linux-gnueabi/include/c++/13/bits/basic_string.h:4109, from /usr/arm-linux-gnueabi/include/c++/13/string:54: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:737:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 6 and 65541 bytes into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:738:41: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65530 [-Wformat-overflow=] 738 | sprintf(cdhit_command, "%s -h > %s", | ^~ 739 | p_options_->cdhit_command_.c_str(), 740 | help_filename); | ~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:738:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 65542) into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:776:53: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65528 [-Wformat-overflow=] 776 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d -bak 1 > %s.log", | ^~ ...... 779 | output_prefix, | ~~~~~~~~~~~~~ SequenceDB.cpp:776:40: note: assuming directive output of 4 bytes 776 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d -bak 1 > %s.log", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp:776:40: note: directive argument in the range [0, 42949672] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:776:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 55 or more bytes (assuming 131133) into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:785:53: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65528 [-Wformat-overflow=] 785 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d > %s.log", | ^~ ...... 788 | output_prefix, | ~~~~~~~~~~~~~ SequenceDB.cpp:785:40: note: assuming directive output of 4 bytes 785 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d > %s.log", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp:785:40: note: directive argument in the range [0, 42949672] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:785:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 48 or more bytes (assuming 131126) into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:830:38: warning: ‘.cluster.bak.clstr’ directive writing 18 bytes into a region of size between 1 and 65536 [-Wformat-overflow=] 830 | sprintf(cluster_filename, "%s.cluster.bak.clstr", output_prefix); | ^~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:830:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 19 and 65554 bytes into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:804:42: warning: ‘.log’ directive writing 4 bytes into a region of size between 1 and 65536 [-Wformat-overflow=] 804 | sprintf(log_filename, "%s.log", output_prefix); | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:804:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 65540 bytes into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘void SequenceDB::RunBlast(std::string, std::string, std::string)’: SequenceDB.cpp:1552:47: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=] 1552 | sprintf(blast_command, "%s -version > %s", p_options_->psiblast_command_.c_str(), blast_help); | ^~ ~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void SequenceDB::RunBlast(std::string, std::string, std::string)’ at SequenceDB.cpp:1552:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 13 or more bytes (assuming 65548) into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/13/algorithm:61, from SequenceDB.cpp:18: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1854:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1854 | __final_insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1854:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72, from SequenceDB.h:19, from SequenceDB.cpp:22: /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Sequence&}; _Tp = Sequence; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:66: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Sequence; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Sequence; _Alloc = std::allocator]’, inlined from ‘int SequenceDB::SetSequenceInfoFromBlastOut(std::string, int)’ at SequenceDB.cpp:224:27: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Sequence; _Alloc = std::allocator]’, inlined from ‘int SequenceDB::SetSequencesFromBlastOut(std::string, std::string, int)’ at SequenceDB.cpp:146:27: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Sequence; _Alloc = std::allocator]’, inlined from ‘int SequenceDB::SetSequencesFromFastaFile(std::string)’ at SequenceDB.cpp:269:28: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Sequence; _Alloc = std::allocator]’, inlined from ‘void SequenceDB::LoadSupportingSet(std::string)’ at SequenceDB.cpp:535:26: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:61: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Variant; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1631:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1631 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1631:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1631:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1926:27: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1910:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1910 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1897:34, inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1931:38: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:88:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 88 | if (__comp(__a, __b)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:90:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 90 | if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:92:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 92 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:97:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 97 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:99:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 99 | else if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Variant, Variant)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘void SequenceDB::ComputeDeltaScores()’ at SequenceDB.cpp:967:6: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Variant, Variant)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘void SequenceDB::PrintDeltaScores(FILE*, std::string)’ at SequenceDB.cpp:1018:6: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Variant, Variant)]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:4894:18, inlined from ‘void SequenceDB::PrintDeltaScores(FILE*)’ at SequenceDB.cpp:1010:6: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_algo.h:1950:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Variant&}; _Tp = Variant; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Variant; _Alloc = std::allocator]’, inlined from ‘int SequenceDB::AddVariant_HGVS(std::string)’ at SequenceDB.cpp:1364:27: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Variant; _Alloc = std::allocator]’, inlined from ‘int SequenceDB::AddVariant_CSV(std::string)’ at SequenceDB.cpp:1474:27: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o ScoreMatrix.o ScoreMatrix.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Sequence.o Sequence.cpp Sequence.cpp: In member function ‘bool Sequence::SetSequenceFromFastaFile(const char*, std::string)’: Sequence.cpp:100:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | fgets(buf, sizeof(buf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Tables.o Tables.cpp arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Variant.o Variant.cpp arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -o provean provean.o Common.o Options.o SequenceDB.o ScoreMatrix.o Sequence.o Tables.o Variant.o make[3]: Leaving directory '/<>/src' Making all in scripts make[3]: Entering directory '/<>/scripts' sed -e 's,\[@\]PSIBLAST\[@\],/usr/bin/psiblast,g' -e 's,\[@\]CDHIT\[@\],/usr/bin/cd-hit,g' -e 's,\[@\]BLASTDB\[@\],,g' -e 's,\[@\]BLASTDBCMD\[@\],/usr/bin/blastdbcmd,g' -e 's,\[@\]VERSION\[@\],1.1.5,g' < ./provean.sh.in > provean.sh chmod +x provean.sh make[3]: Leaving directory '/<>/scripts' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/provean/ -a make -j1 install DESTDIR=/<>/provean-1.1.5\+ds/debian/provean AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/provean/usr/bin' /usr/bin/install -c provean '/<>/debian/provean/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in scripts make[2]: Entering directory '/<>/scripts' make[3]: Entering directory '/<>/scripts' /usr/bin/mkdir -p '/<>/debian/provean/usr/bin' /usr/bin/install -c provean.sh '/<>/debian/provean/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/scripts' make[2]: Leaving directory '/<>/scripts' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/provean/usr/share/data/provean/examples' /usr/bin/install -c -m 644 P04637.fasta P04637.var '/<>/debian/provean/usr/share/data/provean/examples' make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/provean/usr/share/doc/provean' /usr/bin/install -c -m 644 README LICENSE '/<>/debian/provean/usr/share/doc/provean' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rm debian/provean/usr/bin/provean.sh make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'provean' in '../provean_1.1.5+ds-2_armel.deb'. dpkg-deb: building package 'provean-dbgsym' in '../provean-dbgsym_1.1.5+ds-2_armel.deb'. dpkg-genbuildinfo --build=any -O../provean_1.1.5+ds-2_armel.buildinfo dpkg-genchanges --build=any -O../provean_1.1.5+ds-2_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-01-11T05:21:11Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ provean_1.1.5+ds-2_armel.changes: --------------------------------- Format: 1.8 Date: Wed, 18 May 2022 11:57:03 +0200 Source: provean Binary: provean provean-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.1.5+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: provean - Protein Variation Effect Analyzer Changes: provean (1.1.5+ds-2) unstable; urgency=medium . * Team upload. * Source-only upload * Standards-Version: 4.6.1 (routine-update) * Add salsa-ci file (routine-update) Checksums-Sha1: f093a51d12f6160a59a8e925148250cb758809b3 469724 provean-dbgsym_1.1.5+ds-2_armel.deb 9cc7fc186d2cf92a520b87025608e348ca0d8816 6033 provean_1.1.5+ds-2_armel.buildinfo 0964079df89df070fd41717f76410cd0ece28e2b 47228 provean_1.1.5+ds-2_armel.deb Checksums-Sha256: e36252c9cca702e091b76c4ced12c4a07e22790439bfa556bf9eec63b3114b4d 469724 provean-dbgsym_1.1.5+ds-2_armel.deb 68f7be706889c79ab0a4e5e35da7f2fcd8d7508c0f1510536a7cd9b50184f5f3 6033 provean_1.1.5+ds-2_armel.buildinfo a028c88b4aab3c62373176f8a93471df78099ded1b469f099fcdca8e1acec94a 47228 provean_1.1.5+ds-2_armel.deb Files: c5dd3150fc012a587a4725af271b5019 469724 debug optional provean-dbgsym_1.1.5+ds-2_armel.deb 09b7aabb3d54dce475862791609628d5 6033 science optional provean_1.1.5+ds-2_armel.buildinfo 1635aeaa8c6d0f7b47f59c0eb0d21b1b 47228 science optional provean_1.1.5+ds-2_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: provean Binary: provean provean-dbgsym Architecture: armel Version: 1.1.5+ds-2 Checksums-Md5: c5dd3150fc012a587a4725af271b5019 469724 provean-dbgsym_1.1.5+ds-2_armel.deb 1635aeaa8c6d0f7b47f59c0eb0d21b1b 47228 provean_1.1.5+ds-2_armel.deb Checksums-Sha1: f093a51d12f6160a59a8e925148250cb758809b3 469724 provean-dbgsym_1.1.5+ds-2_armel.deb 0964079df89df070fd41717f76410cd0ece28e2b 47228 provean_1.1.5+ds-2_armel.deb Checksums-Sha256: e36252c9cca702e091b76c4ced12c4a07e22790439bfa556bf9eec63b3114b4d 469724 provean-dbgsym_1.1.5+ds-2_armel.deb a028c88b4aab3c62373176f8a93471df78099ded1b469f099fcdca8e1acec94a 47228 provean_1.1.5+ds-2_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 11 Jan 2024 05:21:10 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.41.50.20231227-1), binutils-common (= 2.41.50.20231227-1), binutils-x86-64-linux-gnu (= 2.41.50.20231227-1), bsdextrautils (= 2.39.3-6), bsdutils (= 1:2.39.3-6), build-essential (= 12.10), bzip2 (= 1.0.8-5+b2), cd-hit (= 4.8.1-4), coreutils (= 9.4-3+b1), cpp (= 4:13.2.0-2), cpp-11 (= 11.4.0-7), cpp-13 (= 13.2.0-9), dash (= 0.5.12-6), debconf (= 1.5.83), debhelper (= 13.11.9), debianutils (= 5.16), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.2), dpkg-dev (= 1.22.2), dwz (= 0.15-1), file (= 1:5.45-2+b1), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2), g++-13 (= 13.2.0-9), gcc (= 4:13.2.0-2), gcc-11 (= 11.4.0-7), gcc-11-base (= 11.4.0-7), gcc-13 (= 13.2.0-9), gcc-13-base (= 13.2.0-9), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-4), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-7), libasan8 (= 13.2.0-9), libatomic1 (= 13.2.0-9), libattr1 (= 1:2.5.1-5), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231227-1), libblkid1 (= 2.39.3-6), libbz2-1.0 (= 1.0.8-5+b2), libc-bin (= 2.37-13), libc-dev-bin (= 2.37-13), libc6 (= 2.37-13), libc6-dev (= 2.37-13), libcap-ng0 (= 0.8.4-1), libcap2 (= 1:2.66-4+b2), libcc1-0 (= 13.2.0-9), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.41.50.20231227-1), libctf0 (= 2.41.50.20231227-1), libdb5.3 (= 5.3.28+dfsg2-4+b1), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.11.9), libdpkg-perl (= 1.22.2), libelf1 (= 0.190-1+b1), libexpat1 (= 2.5.0-2+b2), libffi8 (= 3.4.4-2), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-7), libgcc-13-dev (= 13.2.0-9), libgcc-s1 (= 13.2.0-9), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2), libgomp1 (= 13.2.0-9), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.41.50.20231227-1), libgssapi-krb5-2 (= 1.20.1-5), libhwasan0 (= 13.2.0-9), libicu72 (= 72.1-4), libisl23 (= 0.26-3+b2), libitm1 (= 13.2.0-9), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.20.1-5), libkeyutils1 (= 1.6.3-2+b2), libkrb5-3 (= 1.20.1-5), libkrb5support0 (= 1.20.1-5), liblmdb0 (= 0.9.31-1), liblsan0 (= 13.2.0-9), liblz4-1 (= 1.9.4-1+b2), liblzma5 (= 5.4.5-0.3), libmagic-mgc (= 1:5.45-2+b1), libmagic1 (= 1:5.45-2+b1), libmbedcrypto7 (= 2.28.6-1), libmbedtls14 (= 2.28.6-1), libmbedx509-1 (= 2.28.6-1), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-6), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20231209-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnumber-compare-perl (= 0.03-3), libpam-modules (= 1.5.2-9.1+b1), libpam-modules-bin (= 1.5.2-9.1+b1), libpam-runtime (= 1.5.2-9.1), libpam0g (= 1.5.2-9.1+b1), libpcre2-8-0 (= 10.42-4), libperl5.38 (= 5.38.2-2), libpipeline1 (= 1.5.7-1+b2), libpython3-stdlib (= 3.11.6-1), libpython3.11-minimal (= 3.11.7-2), libpython3.11-stdlib (= 3.11.7-2), libquadmath0 (= 13.2.0-9), libreadline8 (= 8.2-3), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-1+b2), libsframe1 (= 2.41.50.20231227-1), libsmartcols1 (= 2.39.3-6), libsqlite3-0 (= 3.44.2-1), libssl3 (= 3.1.4-2), libstdc++-13-dev (= 13.2.0-9), libstdc++6 (= 13.2.0-9), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.2-4), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-7), libtsan2 (= 13.2.0-9), libubsan1 (= 13.2.0-9), libuchardet0 (= 0.0.8-1), libudev1 (= 255.2-4), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.9-1), login (= 1:4.13+dfsg1-3+b1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), media-types (= 10.1.0), ncbi-blast+ (= 2.12.0+ds-4), ncbi-data (= 6.1.20170106+dfsg1-10), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), netbase (= 6.4), patch (= 2.7.6-7), perl (= 5.38.2-2), perl-base (= 5.38.2-2), perl-modules-5.38 (= 5.38.2-2), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.6-1), python3-minimal (= 3.11.6-1), python3.11 (= 3.11.7-2), python3.11-minimal (= 3.11.7-2), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-5), tar (= 1.35+dfsg-2), tzdata (= 2023d-1), usrmerge (= 38), util-linux (= 2.39.3-6), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1652867823" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ provean-dbgsym_1.1.5+ds-2_armel.deb ----------------------------------- new Debian package, version 2.0. size 469724 bytes: control archive=536 bytes. 376 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: provean-dbgsym Source: provean Version: 1.1.5+ds-2 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 485 Depends: provean (= 1.1.5+ds-2) Section: debug Priority: optional Description: debug symbols for provean Build-Ids: 3a6ad462665b78541be639e667189dfaba456e3f drwxr-xr-x root/root 0 2022-05-18 09:57 ./ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/debug/.build-id/3a/ -rw-r--r-- root/root 485564 2022-05-18 09:57 ./usr/lib/debug/.build-id/3a/6ad462665b78541be639e667189dfaba456e3f.debug drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-05-18 09:57 ./usr/share/doc/provean-dbgsym -> provean provean_1.1.5+ds-2_armel.deb ---------------------------- new Debian package, version 2.0. size 47228 bytes: control archive=1136 bytes. 1033 bytes, 24 lines control 544 bytes, 8 lines md5sums Package: provean Version: 1.1.5+ds-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 136 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: http://provean.jcvi.org Description: Protein Variation Effect Analyzer PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein. . PROVEAN is useful for filtering sequence variants to identify nonsynonymous or indel variants that are predicted to be functionally important. . The performance of PROVEAN is comparable to popular tools such as SIFT or PolyPhen-2. . A fast computation approach to obtain pairwise sequence alignment scores enabled the generation of precomputed PROVEAN predictions for 20 single AA substitutions and a single AA deletion at every amino acid position of all protein sequences in human and mouse. drwxr-xr-x root/root 0 2022-05-18 09:57 ./ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/bin/ -rwxr-xr-x root/root 117268 2022-05-18 09:57 ./usr/bin/provean drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/data/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/data/provean/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/data/provean/examples/ -rw-r--r-- root/root 482 2022-05-18 09:57 ./usr/share/data/provean/examples/P04637.fasta -rw-r--r-- root/root 51 2022-05-18 09:57 ./usr/share/data/provean/examples/P04637.var drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/doc/provean/ -rw-r--r-- root/root 713 2022-05-18 09:57 ./usr/share/doc/provean/LICENSE -rw-r--r-- root/root 2709 2022-05-18 09:57 ./usr/share/doc/provean/README.gz -rw-r--r-- root/root 268 2022-05-18 09:57 ./usr/share/doc/provean/changelog.Debian.gz -rw-r--r-- root/root 647 2022-05-18 09:57 ./usr/share/doc/provean/copyright drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/man/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/man/man1/ -rw-r--r-- root/root 358 2022-05-18 09:57 ./usr/share/man/man1/provean.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1317 B] Get:5 copy:/<>/apt_archive ./ Packages [1396 B] Fetched 3328 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLEExecute external solver... The following information might help you to understand what is wrong: The following packages have unmet dependencies: libtext-xslate-perl : Depends: perlapi-5.36.0 but it is not installable Depends: libmouse-perl but it is not going to be installed Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:armel : Depends: lintian:amd64 E: External solver failed with: The following packages have unmet dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 6336 Build-Time: 14 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 14 Job: provean_1.1.5+ds-2 Lintian: error Machine Architecture: amd64 Package: provean Package-Time: 39 Source-Version: 1.1.5+ds-2 Space: 6336 Status: successful Version: 1.1.5+ds-2 -------------------------------------------------------------------------------- Finished at 2024-01-11T05:21:11Z Build needed 00:00:39, 6336k disk space