sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | provean 1.1.5+ds-2 (armhf) Tue, 15 Oct 2024 02:39:01 +0000 | +==============================================================================+ Package: provean Version: 1.1.5+ds-2 Source Version: 1.1.5+ds-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-a59b3215-f06d-4a00-9db5-35b7fed2e08d' with '<>' I: NOTICE: Log filtering will replace 'build/provean-NgjxCB/resolver-OIcbY7' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main armhf Packages [9552 kB] Fetched 9552 kB in 1s (9319 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'provean' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/provean.git Please use: git clone https://salsa.debian.org/med-team/provean.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 26.9 kB of source archives. Get:1 http://localhost:3142/debian sid/main provean 1.1.5+ds-2 (dsc) [1957 B] Get:2 http://localhost:3142/debian sid/main provean 1.1.5+ds-2 (tar) [22.7 kB] Get:3 http://localhost:3142/debian sid/main provean 1.1.5+ds-2 (diff) [2220 B] Fetched 26.9 kB in 1s (31.5 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/provean-NgjxCB/provean-1.1.5+ds' with '<>' I: NOTICE: Log filtering will replace 'build/provean-NgjxCB' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: cd-hit, debhelper-compat (= 13), ncbi-blast+, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: cd-hit, debhelper-compat (= 13), ncbi-blast+, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [735 B] Get:5 copy:/<>/apt_archive ./ Packages [778 B] Fetched 2122 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: login mount Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cd-hit:armhf cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2 libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libelf1t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev:armhf libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblmdb0 libmagic-mgc libmagic1t64 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libncursesw6 libnghttp2-14 libnsl2 libpipeline1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8t64 libsqlite3-0 libstdc++-14-dev:armhf libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtirpc-common libtirpc3t64 libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libuv1t64 libxml2 linux-libc-dev-armhf-cross m4 man-db media-types ncbi-blast+ ncbi-data netbase po-debconf python3 python3-minimal python3.12 python3.12-minimal readline-common sensible-utils zlib1g:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf krb5-doc krb5-user libstdc++-14-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.12-venv python3.12-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl krb5-locales libgpm2 libltdl-dev libmail-sendmail-perl ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cd-hit:armhf cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2 libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libelf1t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev:armhf libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblmdb0 libmagic-mgc libmagic1t64 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libncursesw6 libnghttp2-14 libnsl2 libpipeline1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8t64 libsqlite3-0 libstdc++-14-dev:armhf libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtirpc-common libtirpc3t64 libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libuv1t64 libxml2 linux-libc-dev-armhf-cross m4 man-db media-types ncbi-blast+ ncbi-data netbase po-debconf python3 python3-minimal python3.12 python3.12-minimal readline-common sbuild-build-depends-main-dummy:armhf sensible-utils zlib1g:armhf 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. 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amd64 ncbi-blast+ amd64 2.16.0+ds-6 [15.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 116 MB in 3s (45.8 MB/s) Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... 12969 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_amd64.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:amd64 (3.12.7-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13289 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../15-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-1) ... 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Setting up file (1:5.45-3) ... Setting up libatomic1-armhf-cross (14.2.0-6cross1) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up linux-libc-dev-armhf-cross (6.11.2-1cross1) ... Setting up autopoint (0.22.5-2) ... Setting up libncursesw6:amd64 (6.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up binutils-arm-linux-gnueabihf (2.43.1-5) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up cpp-14-arm-linux-gnueabihf (14.2.0-6cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (14.2.0-6cross1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libtool (2.4.7-7) ... Setting up libgcc-s1-armhf-cross (14.2.0-6cross1) ... Setting up libc6-dev-armhf-cross (2.40-3cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-armhf-cross (14.2.0-6cross1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libubsan1-armhf-cross (14.2.0-6cross1) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up groff-base (1.23.0-5) ... Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up libasan8-armhf-cross (14.2.0-6cross1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-14-dev-armhf-cross (14.2.0-6cross1) ... Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libstdc++-14-dev-armhf-cross (14.2.0-6cross1) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-1) ... Setting up python3.12 (3.12.7-1) ... Setting up gcc-14-arm-linux-gnueabihf (14.2.0-6cross1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up g++-14-arm-linux-gnueabihf (14.2.0-6cross1) ... Setting up python3 (3.12.6-1) ... Setting up ncbi-blast+ (2.16.0+ds-6) ... Setting up g++-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up crossbuild-essential-armhf (12.12) ... Setting up libgcc-s1:armhf (14.2.0-6) ... Setting up libc6:armhf (2.40-3) ... Setting up libasan8:armhf (14.2.0-6) ... Setting up libstdc++6:armhf (14.2.0-6) ... Setting up zlib1g:armhf (1:1.3.dfsg+really1.3.1-1) ... Setting up libcrypt1:armhf (1:4.4.36-5) ... Setting up libgomp1:armhf (14.2.0-6) ... Setting up libatomic1:armhf (14.2.0-6) ... Setting up libubsan1:armhf (14.2.0-6) ... Setting up libcrypt-dev:armhf (1:4.4.36-5) ... Setting up libc6-dev:armhf (2.40-3) ... Setting up libgcc-14-dev:armhf (14.2.0-6) ... Setting up libstdc++-14-dev:armhf (14.2.0-6) ... Setting up cd-hit:armhf (4.8.1-4) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-6 gcc-14_14.2.0-6 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-6 libstdc++-14-dev-armhf-cross_14.2.0-6cross1 libstdc++6_14.2.0-6 libstdc++6-armhf-cross_14.2.0-6cross1 linux-libc-dev_6.11.2-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-5 binutils-arm-linux-gnueabihf_2.43.1-5 binutils-common_2.43.1-5 binutils-x86-64-linux-gnu_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 cd-hit_4.8.1-4 coreutils_9.4-3.1 cpp_4:14.2.0-1 cpp-14_14.2.0-6 cpp-14-arm-linux-gnueabihf_14.2.0-6cross1 cpp-14-x86-64-linux-gnu_14.2.0-6 cpp-arm-linux-gnueabihf_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-armhf_12.12 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-6 g++-14-arm-linux-gnueabihf_14.2.0-6cross1 g++-14-x86-64-linux-gnu_14.2.0-6 g++-arm-linux-gnueabihf_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-6 gcc-14-arm-linux-gnueabihf_14.2.0-6cross1 gcc-14-arm-linux-gnueabihf-base_14.2.0-6cross1 gcc-14-base_14.2.0-6 gcc-14-cross-base_14.2.0-6cross1 gcc-14-x86-64-linux-gnu_14.2.0-6 gcc-arm-linux-gnueabihf_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.22.5-2 gettext-base_0.22.5-2 gpgv_2.2.44-1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.25 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-6 libasan8-armhf-cross_14.2.0-6cross1 libatomic1_14.2.0-6 libatomic1-armhf-cross_14.2.0-6cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-5 libblkid1_2.40.2-9 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-3 libc-dev-bin_2.40-3 libc6_2.40-3 libc6-armhf-cross_2.40-3cross1 libc6-dev_2.40-3 libc6-dev-armhf-cross_2.40-3cross1 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-6 libcom-err2_1.47.1-1 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-5 libctf0_2.43.1-5 libdb5.3t64_5.3.28+dfsg2-8 libdebconfclient0_0.272 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: provean Binary: provean Architecture: any Version: 1.1.5+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Andrius Merkys , Homepage: http://provean.jcvi.org Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/provean Vcs-Git: https://salsa.debian.org/med-team/provean.git Build-Depends: cd-hit, debhelper-compat (= 13), ncbi-blast+ Package-List: provean deb science optional arch=any Checksums-Sha1: 0e8149ee7c3900f801e8631ae66cb572b4d56989 22704 provean_1.1.5+ds.orig.tar.xz b61dc8b28f43ab497912be015187047d0370cee1 2220 provean_1.1.5+ds-2.debian.tar.xz Checksums-Sha256: fb9742e161251eeee034e8982e03c719bf9caa2b388fcb32eaefdf422ab3383b 22704 provean_1.1.5+ds.orig.tar.xz 9c0936ddb101f7f0a46d22c2c912c466cbd7544355300bd47e6f77221a448ed1 2220 provean_1.1.5+ds-2.debian.tar.xz Files: 7ab74c207de71dd63e3187013e1b4129 22704 provean_1.1.5+ds.orig.tar.xz adbe2b01aa22c3b26b26108ce69fcfdb 2220 provean_1.1.5+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmKEw6ARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEMiw/8DJcwRivHUvAn+8uTD1iADH/6Cy5Jqady vVG+17j3b27T2EokNKE/tleUZk4NSA4jmFuXEIjN8jx7qs4ieVgVMxRXshwtNP76 Nk2owDDOxI5cJe/mkfQ90hNCLDKoRCLFi+YEDH3Ndhh0ILdLPK8X2g+XmiGcB3Em MuuCnGx1TifACXgOPEfN9v0xTgN8+87YoqqJH5Jho87tRUoOmWQxT15uFSqXdzFi XfyYB1ZVKC04Ic7ouaj14Q68kkc7nM3yXejUUuQjT1EnO7BSH4JkIUHEBe5khtov PrPjibMEBvjilPYYVkAuTf5D6tFmw+YpRyStKzZSYYQVwvxVSkfzeNkHySekCVyZ rguZCcXUob5LtzdZrhIpSihYeXbPuFLYJwjunWx1LZgiurn4gb+G9jA3fK1ElChS tKoOHksWbgWdXM72x+EJUd+wmpa/wwQY94I4cBbopOXW5U8PdHal9+Cgl3wkzJl5 2F388zBdQbi51l0XFjw0gxD67M/lYgj9PdgUh+dCV3ZxlgqMYNaYvaXZyNvybKVa 91NglnBtj8COFLBEDadAdv0pkOztWQ1juhbcuRsWghOOgjb/eJbjR+TzNDaC7Wcw X8zuk71A5r4ZtyzlW/0O9mE0fri1BN6Gy9m8mRecQqThCpdioM3ZcGpVc74v8jxU MVbDnzlpir0= =ThI/ -----END PGP SIGNATURE----- gpgv: Signature made Wed May 18 10:00:00 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./provean_1.1.5+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting provean in /<> dpkg-source: info: unpacking provean_1.1.5+ds.orig.tar.xz dpkg-source: info: unpacking provean_1.1.5+ds-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.ss9sJX9qBb/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-a59b3215-f06d-4a00-9db5-35b7fed2e08d SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package provean dpkg-buildpackage: info: source version 1.1.5+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabihf-g++ accepts -g... yes checking for arm-linux-gnueabihf-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabihf-g++... none checking for psiblast... /usr/bin/psiblast checking for cd-hit... /usr/bin/cd-hit checking for blastdbcmd... /usr/bin/blastdbcmd checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o provean.o provean.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Common.o Common.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Options.o Options.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o SequenceDB.o SequenceDB.cpp SequenceDB.cpp: In member function ‘int SequenceDB::SetSequencesFromFastaFile(std::string)’: SequenceDB.cpp:295:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 295 | fgets(buf, sizeof(buf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::SetOnlySequencesFromFastaFile(std::string)’: SequenceDB.cpp:652:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 652 | fgets(buf, sizeof(buf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algobase.h:71, from /usr/arm-linux-gnueabihf/include/c++/14/string:51, from /usr/arm-linux-gnueabihf/include/c++/14/bits/locale_classes.h:40, from /usr/arm-linux-gnueabihf/include/c++/14/bits/ios_base.h:41, from /usr/arm-linux-gnueabihf/include/c++/14/ios:44, from /usr/arm-linux-gnueabihf/include/c++/14/ostream:40, from /usr/arm-linux-gnueabihf/include/c++/14/iostream:41, from SequenceDB.cpp:17: /usr/arm-linux-gnueabihf/include/c++/14/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Variant, Variant)]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 157 | operator()(_Iterator1 __it1, _Iterator2 __it2) | ^~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:737:35: warning: ‘.help’ directive writing 5 bytes into a region of size between 1 and 65536 [-Wformat-overflow=] 737 | sprintf(help_filename, "%s.help", output_prefix); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:970, from /usr/arm-linux-gnueabihf/include/c++/14/cstdio:42, from /usr/arm-linux-gnueabihf/include/c++/14/ext/string_conversions.h:45, from /usr/arm-linux-gnueabihf/include/c++/14/bits/basic_string.h:4154, from /usr/arm-linux-gnueabihf/include/c++/14/string:54: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:737:9: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 6 and 65541 bytes into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:738:41: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65530 [-Wformat-overflow=] 738 | sprintf(cdhit_command, "%s -h > %s", | ^~ 739 | p_options_->cdhit_command_.c_str(), 740 | help_filename); | ~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:738:9: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 65542) into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:776:53: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65528 [-Wformat-overflow=] 776 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d -bak 1 > %s.log", | ^~ ...... 779 | output_prefix, | ~~~~~~~~~~~~~ SequenceDB.cpp:776:40: note: assuming directive output of 4 bytes 776 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d -bak 1 > %s.log", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp:776:40: note: directive argument in the range [0, 42949672] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:776:10: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 55 or more bytes (assuming 131133) into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:785:53: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65528 [-Wformat-overflow=] 785 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d > %s.log", | ^~ ...... 788 | output_prefix, | ~~~~~~~~~~~~~ SequenceDB.cpp:785:40: note: assuming directive output of 4 bytes 785 | sprintf(cdhit_command, "%s -i %s -o %s.cluster -c %.2f -s %.1f -n 5 -l %d > %s.log", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SequenceDB.cpp:785:40: note: directive argument in the range [0, 42949672] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:785:10: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 48 or more bytes (assuming 131126) into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:830:38: warning: ‘.cluster.bak.clstr’ directive writing 18 bytes into a region of size between 1 and 65536 [-Wformat-overflow=] 830 | sprintf(cluster_filename, "%s.cluster.bak.clstr", output_prefix); | ^~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:830:9: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 19 and 65554 bytes into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’: SequenceDB.cpp:804:42: warning: ‘.log’ directive writing 4 bytes into a region of size between 1 and 65536 [-Wformat-overflow=] 804 | sprintf(log_filename, "%s.log", output_prefix); | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int SequenceDB::ClusterAndSelectFromFastaFile(std::string)’ at SequenceDB.cpp:804:10: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 65540 bytes into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ SequenceDB.cpp: In member function ‘void SequenceDB::RunBlast(std::string, std::string, std::string)’: SequenceDB.cpp:1552:47: warning: ‘%s’ directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=] 1552 | sprintf(blast_command, "%s -version > %s", p_options_->psiblast_command_.c_str(), blast_help); | ^~ ~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void SequenceDB::RunBlast(std::string, std::string, std::string)’ at SequenceDB.cpp:1552:9: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 13 or more bytes (assuming 65548) into a destination of size 65536 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/14/algorithm:61, from SequenceDB.cpp:18: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1777:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1777 | if (__comp(__i, __first)) | ~~~~~~^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __final_insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:61: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Variant; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_heap.h:232:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 232 | if (__comp(__first + __secondChild, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 233 | __first + (__secondChild - 1))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1589:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1589 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1589:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1589:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1595:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1595 | if (__comp(__i, __first)) | ~~~~~~^~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1884:27: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1868:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1868 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1855:34, inlined from ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1889:38: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:88:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 88 | if (__comp(__a, __b)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:90:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 90 | if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:92:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 92 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:97:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 97 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:99:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 99 | else if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Variant, Variant)]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:4804:18, inlined from ‘void SequenceDB::ComputeDeltaScores()’ at SequenceDB.cpp:967:6: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1908:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1908 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Variant, Variant)]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:4804:18, inlined from ‘void SequenceDB::PrintDeltaScores(FILE*, std::string)’ at SequenceDB.cpp:1018:6: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1908:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1908 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Variant, Variant)]’ at /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:4804:18, inlined from ‘void SequenceDB::PrintDeltaScores(FILE*)’ at SequenceDB.cpp:1010:6: /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/14/bits/stl_algo.h:1908:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1908 | std::__final_insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o ScoreMatrix.o ScoreMatrix.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Sequence.o Sequence.cpp Sequence.cpp: In member function ‘bool Sequence::SetSequenceFromFastaFile(const char*, std::string)’: Sequence.cpp:100:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | fgets(buf, sizeof(buf), fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Tables.o Tables.cpp arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o Variant.o Variant.cpp arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -o provean provean.o Common.o Options.o SequenceDB.o ScoreMatrix.o Sequence.o Tables.o Variant.o make[3]: Leaving directory '/<>/src' Making all in scripts make[3]: Entering directory '/<>/scripts' sed -e 's,\[@\]PSIBLAST\[@\],/usr/bin/psiblast,g' -e 's,\[@\]CDHIT\[@\],/usr/bin/cd-hit,g' -e 's,\[@\]BLASTDB\[@\],,g' -e 's,\[@\]BLASTDBCMD\[@\],/usr/bin/blastdbcmd,g' -e 's,\[@\]VERSION\[@\],1.1.5,g' < ./provean.sh.in > provean.sh chmod +x provean.sh make[3]: Leaving directory '/<>/scripts' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/provean/ -a make -j1 install DESTDIR=/<>/provean-1.1.5\+ds/debian/provean AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/provean/usr/bin' /usr/bin/install -c provean '/<>/debian/provean/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in scripts make[2]: Entering directory '/<>/scripts' make[3]: Entering directory '/<>/scripts' /usr/bin/mkdir -p '/<>/debian/provean/usr/bin' /usr/bin/install -c provean.sh '/<>/debian/provean/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/scripts' make[2]: Leaving directory '/<>/scripts' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/provean/usr/share/data/provean/examples' /usr/bin/install -c -m 644 P04637.fasta P04637.var '/<>/debian/provean/usr/share/data/provean/examples' make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/provean/usr/share/doc/provean' /usr/bin/install -c -m 644 README LICENSE '/<>/debian/provean/usr/share/doc/provean' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rm debian/provean/usr/bin/provean.sh make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'provean' in '../provean_1.1.5+ds-2_armhf.deb'. dpkg-deb: building package 'provean-dbgsym' in '../provean-dbgsym_1.1.5+ds-2_armhf.deb'. dpkg-genbuildinfo --build=any -O../provean_1.1.5+ds-2_armhf.buildinfo dpkg-genchanges --build=any -O../provean_1.1.5+ds-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-10-15T02:39:37Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ provean_1.1.5+ds-2_armhf.changes: --------------------------------- Format: 1.8 Date: Wed, 18 May 2022 11:57:03 +0200 Source: provean Binary: provean provean-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.1.5+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: provean - Protein Variation Effect Analyzer Changes: provean (1.1.5+ds-2) unstable; urgency=medium . * Team upload. * Source-only upload * Standards-Version: 4.6.1 (routine-update) * Add salsa-ci file (routine-update) Checksums-Sha1: c1b254295615e0211c17299ba8127cc8046a481c 462952 provean-dbgsym_1.1.5+ds-2_armhf.deb 8f53d57d17054f1af946c095e648c07dd59c91b5 5812 provean_1.1.5+ds-2_armhf.buildinfo 01453c7b0969a42977a70763192ec6821c81d78b 48276 provean_1.1.5+ds-2_armhf.deb Checksums-Sha256: ece42b58924d30d1f1e33e58804a9271ede34e6433beefb78e0695a1b486ec6e 462952 provean-dbgsym_1.1.5+ds-2_armhf.deb 9e6cbb6a791a16c3c025a92fb117d40c6a868828a5a1985715024b78b332d364 5812 provean_1.1.5+ds-2_armhf.buildinfo 425753037126e903296acd548c03ac575ced98a9c8aa57b76a4a6a1ae21b966a 48276 provean_1.1.5+ds-2_armhf.deb Files: 54d34837813d21566b16f12c8604b839 462952 debug optional provean-dbgsym_1.1.5+ds-2_armhf.deb 522c2759ff5eba6bd41805fb029749e0 5812 science optional provean_1.1.5+ds-2_armhf.buildinfo f672646e0f05c47e8023817bc5dfb862 48276 science optional provean_1.1.5+ds-2_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: provean Binary: provean provean-dbgsym Architecture: armhf Version: 1.1.5+ds-2 Checksums-Md5: 54d34837813d21566b16f12c8604b839 462952 provean-dbgsym_1.1.5+ds-2_armhf.deb f672646e0f05c47e8023817bc5dfb862 48276 provean_1.1.5+ds-2_armhf.deb Checksums-Sha1: c1b254295615e0211c17299ba8127cc8046a481c 462952 provean-dbgsym_1.1.5+ds-2_armhf.deb 01453c7b0969a42977a70763192ec6821c81d78b 48276 provean_1.1.5+ds-2_armhf.deb Checksums-Sha256: ece42b58924d30d1f1e33e58804a9271ede34e6433beefb78e0695a1b486ec6e 462952 provean-dbgsym_1.1.5+ds-2_armhf.deb 425753037126e903296acd548c03ac575ced98a9c8aa57b76a4a6a1ae21b966a 48276 provean_1.1.5+ds-2_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 15 Oct 2024 02:39:36 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-5), binutils-common (= 2.43.1-5), binutils-x86-64-linux-gnu (= 2.43.1-5), bsdextrautils (= 2.40.2-9), bsdutils (= 1:2.40.2-9), build-essential (= 12.12), bzip2 (= 1.0.8-6), cd-hit (= 4.8.1-4), coreutils (= 9.4-3.1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-6), cpp-14-x86-64-linux-gnu (= 14.2.0-6), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-6), g++-14-x86-64-linux-gnu (= 14.2.0-6), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-6), gcc-14-base (= 14.2.0-6), gcc-14-x86-64-linux-gnu (= 14.2.0-6), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.25), init-system-helpers (= 1.67), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-6), libatomic1 (= 14.2.0-6), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-5), libblkid1 (= 2.40.2-9), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-3), libc-dev-bin (= 2.40-3), libc6 (= 2.40-3), libc6-dev (= 2.40-3), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-6), libcom-err2 (= 1.47.1-1), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-5), libctf0 (= 2.43.1-5), libdb5.3t64 (= 5.3.28+dfsg2-8), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libexpat1 (= 2.6.3-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-14-dev (= 14.2.0-6), libgcc-s1 (= 14.2.0-6), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-6), libgprofng0 (= 2.43.1-5), libgssapi-krb5-2 (= 1.21.3-3), libhwasan0 (= 14.2.0-6), libicu72 (= 72.1-5), libisl23 (= 0.27-1), libitm1 (= 14.2.0-6), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), liblmdb0 (= 0.9.31-1+b1), liblsan0 (= 14.2.0-6), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmbedcrypto7t64 (= 2.28.8-1), libmbedtls14t64 (= 2.28.8-1), libmbedx509-1t64 (= 2.28.8-1), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-9), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libnghttp2-14 (= 1.63.0-1), libnsl2 (= 1.3.0-3+b2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-6), libpipeline1 (= 1.5.8-1), libpython3-stdlib (= 3.12.6-1), libpython3.12-minimal (= 3.12.7-1), libpython3.12-stdlib (= 3.12.7-1), libquadmath0 (= 14.2.0-6), libreadline8t64 (= 8.2-5), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-5), libsmartcols1 (= 2.40.2-9), libsqlite3-0 (= 3.46.1-1), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-6), libstdc++6 (= 14.2.0-6), libsystemd0 (= 256.7-1), libtinfo6 (= 6.5-2), libtirpc-common (= 1.3.4+ds-1.3), libtirpc3t64 (= 1.3.4+ds-1.3), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-6), libubsan1 (= 14.2.0-6), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.7-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-9), libuv1t64 (= 1.48.0-6), libxml2 (= 2.12.7+dfsg+really2.9.14-0.1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.11.2-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), media-types (= 10.1.0), ncbi-blast+ (= 2.16.0+ds-6), ncbi-data (= 6.1.20170106+dfsg2-4), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-6), perl-base (= 5.40.0-6), perl-modules-5.40 (= 5.40.0-6), po-debconf (= 1.0.21+nmu1), python3 (= 3.12.6-1), python3-minimal (= 3.12.6-1), python3.12 (= 3.12.7-1), python3.12-minimal (= 3.12.7-1), readline-common (= 8.2-5), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), tzdata (= 2024b-3), usr-is-merged (= 39), util-linux (= 2.40.2-9), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1652867823" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ provean-dbgsym_1.1.5+ds-2_armhf.deb ----------------------------------- new Debian package, version 2.0. size 462952 bytes: control archive=536 bytes. 376 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: provean-dbgsym Source: provean Version: 1.1.5+ds-2 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 478 Depends: provean (= 1.1.5+ds-2) Section: debug Priority: optional Description: debug symbols for provean Build-Ids: 657620b53884062bc0c48a003acf922bd567cb0b drwxr-xr-x root/root 0 2022-05-18 09:57 ./ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/lib/debug/.build-id/65/ -rw-r--r-- root/root 478828 2022-05-18 09:57 ./usr/lib/debug/.build-id/65/7620b53884062bc0c48a003acf922bd567cb0b.debug drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-05-18 09:57 ./usr/share/doc/provean-dbgsym -> provean provean_1.1.5+ds-2_armhf.deb ---------------------------- new Debian package, version 2.0. size 48276 bytes: control archive=1136 bytes. 1033 bytes, 24 lines control 544 bytes, 8 lines md5sums Package: provean Version: 1.1.5+ds-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 108 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: http://provean.jcvi.org Description: Protein Variation Effect Analyzer PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein. . PROVEAN is useful for filtering sequence variants to identify nonsynonymous or indel variants that are predicted to be functionally important. . The performance of PROVEAN is comparable to popular tools such as SIFT or PolyPhen-2. . A fast computation approach to obtain pairwise sequence alignment scores enabled the generation of precomputed PROVEAN predictions for 20 single AA substitutions and a single AA deletion at every amino acid position of all protein sequences in human and mouse. drwxr-xr-x root/root 0 2022-05-18 09:57 ./ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/bin/ -rwxr-xr-x root/root 88632 2022-05-18 09:57 ./usr/bin/provean drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/data/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/data/provean/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/data/provean/examples/ -rw-r--r-- root/root 482 2022-05-18 09:57 ./usr/share/data/provean/examples/P04637.fasta -rw-r--r-- root/root 51 2022-05-18 09:57 ./usr/share/data/provean/examples/P04637.var drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/doc/provean/ -rw-r--r-- root/root 713 2022-05-18 09:57 ./usr/share/doc/provean/LICENSE -rw-r--r-- root/root 2709 2022-05-18 09:57 ./usr/share/doc/provean/README.gz -rw-r--r-- root/root 268 2022-05-18 09:57 ./usr/share/doc/provean/changelog.Debian.gz -rw-r--r-- root/root 647 2022-05-18 09:57 ./usr/share/doc/provean/copyright drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/man/ drwxr-xr-x root/root 0 2022-05-18 09:57 ./usr/share/man/man1/ -rw-r--r-- root/root 358 2022-05-18 09:57 ./usr/share/man/man1/provean.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1317 B] Get:5 copy:/<>/apt_archive ./ Packages [1396 B] Fetched 3328 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: libnetaddr-ip-perl : Depends: perlapi-5.38.2 but it is not installable libvariable-magic-perl : Depends: perlapi-5.38.2 but it is not installable libnet-ssleay-perl : Depends: perlapi-5.38.2 but it is not installable libsereal-decoder-perl : Depends: perlapi-5.38.2 but it is not installable libdevel-size-perl : Depends: perlapi-5.38.2 but it is not installable libsyntax-keyword-try-perl : Depends: perlapi-5.38.2 but it is not installable Depends: libxs-parse-keyword-perl (>= 0.35) but it is not going to be installed libclass-xsaccessor-perl : Depends: perlapi-5.38.2 but it is not installable Depends: perl (< 5.38.3~) but 5.40.0-6 is to be installed libtext-markdown-discount-perl : Depends: perlapi-5.38.2 but it is not installable libsereal-encoder-perl : Depends: perlapi-5.38.2 but it is not installable libterm-readkey-perl : Depends: perlapi-5.38.2 but it is not installable libperlio-utf8-strict-perl : Depends: perlapi-5.38.2 but it is not installable libtext-xslate-perl : Depends: perlapi-5.38.2 but it is not installable Depends: libdata-messagepack-perl but it is not going to be installed Depends: libmouse-perl but it is not going to be installed libparams-classify-perl : Depends: libdevel-callchecker-perl but it is not going to be installed Depends: perlapi-5.38.2 but it is not installable libhtml-parser-perl : Depends: perlapi-5.38.2 but it is not installable libsub-identify-perl : Depends: perlapi-5.38.2 but it is not installable libberkeleydb-perl : Depends: perlapi-5.38.2 but it is not installable libunicode-utf8-perl : Depends: perlapi-5.38.2 but it is not installable libparams-util-perl : Depends: perlapi-5.38.2 but it is not installable libtime-moment-perl : Depends: perlapi-5.38.2 but it is not installable libemail-address-xs-perl : Depends: perlapi-5.38.2 but it is not installable libclone-perl : Depends: perlapi-5.38.2 but it is not installable libyaml-libyaml-perl : Depends: perlapi-5.38.2 but it is not installable libtext-levenshteinxs-perl : Depends: perlapi-5.38.2 but it is not installable libxml-libxml-perl : Depends: perlapi-5.38.2 but it is not installable libcpanel-json-xs-perl : Depends: perlapi-5.38.2 but it is not installable libperlio-gzip-perl : Depends: perlapi-5.38.2 but it is not installable libsub-name-perl : Depends: perlapi-5.38.2 but it is not installable libapt-pkg-perl : Depends: perlapi-5.38.2 but it is not installable libproc-processtable-perl : Depends: perlapi-5.38.2 but it is not installable Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:armhf : Depends: lintian:amd64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 6152 Build-Time: 14 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 14 Job: provean_1.1.5+ds-2 Lintian: error Machine Architecture: amd64 Package: provean Package-Time: 36 Source-Version: 1.1.5+ds-2 Space: 6152 Status: successful Version: 1.1.5+ds-2 -------------------------------------------------------------------------------- Finished at 2024-10-15T02:39:37Z Build needed 00:00:36, 6152k disk space