sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | qtltools 1.1+dfsg-3 (arm64) Fri, 15 Mar 2019 13:58:24 +0000 | +==============================================================================+ Package: qtltools Version: 1.1+dfsg-3 Source Version: 1.1+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-2629e07a-80df-42df-a3eb-73969d02806d' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [242 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8102 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-15-0810.40.pdiff [1518 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-15-0810.40.pdiff [1518 B] Fetched 8374 kB in 2s (4741 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'qtltools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/qtltools.git Please use: git clone https://salsa.debian.org/med-team/qtltools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 13.6 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main qtltools 1.1+dfsg-3 (dsc) [2196 B] Get:2 http://debian.oregonstate.edu/debian unstable/main qtltools 1.1+dfsg-3 (tar) [91.2 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main qtltools 1.1+dfsg-3 (diff) [13.6 MB] Fetched 13.6 MB in 1s (13.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/qtltools-CUsgVX/qtltools-1.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/qtltools-CUsgVX' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-dxsW1r/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-dxsW1r/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dxsW1r/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-dxsW1r/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dxsW1r/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-dxsW1r/apt_archive ./ Packages [452 B] Fetched 1771 B in 0s (121 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libmpx2-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 161 MB of additional disk space will be used. Get:1 copy:/<>/resolver-dxsW1r/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.31.1-15 [2907 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu-base amd64 8.3.0-2cross1 [190 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-aarch64-linux-gnu amd64 8.3.0-2cross1 [6251 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-2cross1 [185 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-7cross1 [1312 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:8.3.0-2cross1 [34.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 8.3.0-2cross1 [66.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 8.3.0-2cross1 [23.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 8.3.0-2cross1 [8620 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 8.3.0-2cross1 [325 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 8.3.0-2cross1 [321 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 8.3.0-2cross1 [117 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 8.3.0-2cross1 [255 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 8.3.0-2cross1 [110 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-arm64-cross all 8.3.0-2cross1 [833 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu amd64 8.3.0-2cross1 [6681 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 4.19.20-1cross1 [1209 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-7cross1 [2322 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-arm64-cross all 8.3.0-2cross1 [1484 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-aarch64-linux-gnu amd64 8.3.0-2cross1 [6821 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 1s (57.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11931 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.31.1-15) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-2cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up libc6-arm64-cross (2.28-7cross1) ... Setting up cpp-8-aarch64-linux-gnu (8.3.0-2cross1) ... Setting up libitm1-arm64-cross (8.3.0-2cross1) ... Setting up linux-libc-dev-arm64-cross (4.19.20-1cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (8.3.0-2cross1) ... Setting up libgcc1-arm64-cross (1:8.3.0-2cross1) ... Setting up libgomp1-arm64-cross (8.3.0-2cross1) ... Setting up libc6-dev-arm64-cross (2.28-7cross1) ... Setting up libstdc++6-arm64-cross (8.3.0-2cross1) ... Setting up cpp-aarch64-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up liblsan0-arm64-cross (8.3.0-2cross1) ... Setting up libubsan1-arm64-cross (8.3.0-2cross1) ... Setting up libtsan0-arm64-cross (8.3.0-2cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-arm64-cross (8.3.0-2cross1) ... Setting up libgcc-8-dev-arm64-cross (8.3.0-2cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-8-aarch64-linux-gnu (8.3.0-2cross1) ... Setting up libstdc++-8-dev-arm64-cross (8.3.0-2cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-aarch64-linux-gnu (4:8.3.0-1) ... Setting up g++-8-aarch64-linux-gnu (8.3.0-2cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-dxsW1r/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-dxsW1r/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dxsW1r/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-dxsW1r/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dxsW1r/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-dxsW1r/apt_archive ./ Packages [569 B] Fetched 2016 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-dxsW1r/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 15211 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-qtltools-dummy' in '/<>/resolver-dxsW1r/apt_archive/sbuild-build-depends-qtltools-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-qtltools-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-dxsW1r/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dxsW1r/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-dxsW1r/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dxsW1r/apt_archive ./ Sources [696 B] Get:5 copy:/<>/resolver-dxsW1r/apt_archive ./ Packages [775 B] Fetched 2434 B in 0s (0 B/s) Reading package lists... Reading package lists... Install qtltools build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libblas-dev:arm64 libblas3:arm64 libboost-iostreams-dev:arm64 libboost-iostreams1.67-dev:arm64 libboost-iostreams1.67.0:arm64 libboost-program-options-dev:arm64 libboost-program-options1.67-dev:arm64 libboost-program-options1.67.0:arm64 libboost-regex1.67-dev:arm64 libboost-regex1.67.0:arm64 libboost1.67-dev:arm64 libbsd0 libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-dev:arm64 libcom-err2:arm64 libcroco3 libcurl3-gnutls:arm64 libdb5.3:arm64 libdeflate0:arm64 libeigen3-dev libelf1 libffi6:arm64 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libgcrypt20:arm64 libgfortran5:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgpg-error0:arm64 libgsl-dev:arm64 libgsl23:arm64 libgslcblas0:arm64 libgssapi-krb5-2:arm64 libhogweed4:arm64 libhts-dev:arm64 libhts2:arm64 libicu-dev:arm64 libicu63:arm64 libidn2-0:arm64 libitm1:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 libldap-common liblsan0:arm64 liblzma-dev:arm64 liblzma5:arm64 libncurses6 libnettle6:arm64 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libpsl5:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsigsegv2 libssh2-1:arm64 libssl1.1:arm64 libstdc++-8-dev:arm64 libstdc++6:arm64 libtasn1-6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libunistring2:arm64 linux-libc-dev:arm64 m4 man-db pkg-config po-debconf r-mathlib:arm64 zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:arm64 libboost1.67-doc:arm64 libboost-atomic1.67-dev:arm64 libboost-chrono1.67-dev:arm64 libboost-container1.67-dev:arm64 libboost-context1.67-dev:arm64 libboost-coroutine1.67-dev:arm64 libboost-date-time1.67-dev:arm64 libboost-exception1.67-dev:arm64 libboost-fiber1.67-dev:arm64 libboost-filesystem1.67-dev:arm64 libboost-graph1.67-dev:arm64 libboost-graph-parallel1.67-dev:arm64 libboost-locale1.67-dev:arm64 libboost-log1.67-dev:arm64 libboost-math1.67-dev:arm64 libboost-mpi1.67-dev:arm64 libboost-mpi-python1.67-dev:arm64 libboost-numpy1.67-dev:arm64 libboost-python1.67-dev:arm64 libboost-random1.67-dev:arm64 libboost-serialization1.67-dev:arm64 libboost-signals1.67-dev:arm64 libboost-stacktrace1.67-dev:arm64 libboost-system1.67-dev:arm64 libboost-test1.67-dev:arm64 libboost-thread1.67-dev:arm64 libboost-timer1.67-dev:arm64 libboost-type-erasure1.67-dev:arm64 libboost-wave1.67-dev:arm64 libboost1.67-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libeigen3-doc libmpfrc++-dev rng-tools:arm64 gnutls-bin:arm64 gsl-ref-psdoc:arm64 | gsl-doc-pdf:arm64 | gsl-doc-info:arm64 | gsl-ref-html:arm64 krb5-doc:arm64 krb5-user:arm64 icu-doc:arm64 liblzma-doc:arm64 libstdc++-8-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:arm64 ca-certificates:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:arm64 krb5-locales:arm64 libgpm2 publicsuffix:arm64 libsasl2-modules:arm64 libltdl-dev libmail-sendmail-perl r-base-core:arm64 r-base-dev:arm64 The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libblas-dev:arm64 libblas3:arm64 libboost-iostreams-dev:arm64 libboost-iostreams1.67-dev:arm64 libboost-iostreams1.67.0:arm64 libboost-program-options-dev:arm64 libboost-program-options1.67-dev:arm64 libboost-program-options1.67.0:arm64 libboost-regex1.67-dev:arm64 libboost-regex1.67.0:arm64 libboost1.67-dev:arm64 libbsd0 libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-dev:arm64 libcom-err2:arm64 libcroco3 libcurl3-gnutls:arm64 libdb5.3:arm64 libdeflate0:arm64 libeigen3-dev libelf1 libffi6:arm64 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libgcrypt20:arm64 libgfortran5:arm64 libglib2.0-0 libgmp10:arm64 libgnutls30:arm64 libgomp1:arm64 libgpg-error0:arm64 libgsl-dev:arm64 libgsl23:arm64 libgslcblas0:arm64 libgssapi-krb5-2:arm64 libhogweed4:arm64 libhts-dev:arm64 libhts2:arm64 libicu-dev:arm64 libicu63:arm64 libidn2-0:arm64 libitm1:arm64 libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 libldap-2.4-2:arm64 libldap-common liblsan0:arm64 liblzma-dev:arm64 liblzma5:arm64 libncurses6 libnettle6:arm64 libnghttp2-14:arm64 libp11-kit0:arm64 libpipeline1 libpsl5:arm64 librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsigsegv2 libssh2-1:arm64 libssl1.1:arm64 libstdc++-8-dev:arm64 libstdc++6:arm64 libtasn1-6:arm64 libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 libunistring2:arm64 linux-libc-dev:arm64 m4 man-db pkg-config po-debconf r-mathlib:arm64 sbuild-build-depends-qtltools-dummy:arm64 zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 64.7 MB of archives. After this operation, 366 MB of additional disk space will be used. Get:1 copy:/<>/resolver-dxsW1r/apt_archive ./ sbuild-build-depends-qtltools-dummy 0.invalid.0 [936 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-8-base arm64 8.3.0-2 [190 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 icu-devtools amd64 63.1-6 [188 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:8.3.0-2 [34.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-8 [2522 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 8.3.0-2 [362 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 8.3.0-2 [328 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 8.3.0-2 [8812 B] Get:36 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1 [89.3 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main arm64 libgfortran5 arm64 8.3.0-2 [298 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main arm64 libblas-dev arm64 3.8.0-2 [105 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 8.3.0-2 [67.8 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 8.3.0-2 [24.0 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 8.3.0-2 [118 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 8.3.0-2 [262 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 8.3.0-2 [111 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-8-dev arm64 8.3.0-2 [828 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 4.19.28-1 [1137 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-8 [2325 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-8-dev arm64 8.3.0-2 [1503 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main arm64 libboost1.67-dev arm64 1.67.0-13 [8386 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main arm64 libicu63 arm64 63.1-6 [8153 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-regex1.67.0 arm64 1.67.0-13 [457 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main arm64 libicu-dev arm64 63.1-6 [9062 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-regex1.67-dev arm64 1.67.0-13 [515 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-1.0 arm64 1.0.6-9 [45.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-iostreams1.67.0 arm64 1.67.0-13 [247 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-iostreams1.67-dev arm64 1.67.0-13 [255 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-iostreams-dev arm64 1.67.0.1 [3632 B] Get:58 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options1.67.0 arm64 1.67.0-13 [343 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options1.67-dev arm64 1.67.0-13 [383 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-program-options-dev arm64 1.67.0.1 [3656 B] Get:61 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-dev arm64 1.0.6-9 [30.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main arm64 libcom-err2 arm64 1.45.0-1 [68.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main arm64 libgmp10 arm64 2:6.1.2+dfsg-4 [226 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main arm64 libnettle6 arm64 3.4.1-1 [225 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main arm64 libhogweed4 arm64 3.4.1-1 [138 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main arm64 libunistring2 arm64 0.9.10-1 [363 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main arm64 libidn2-0 arm64 2.0.5-1 [75.4 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main arm64 libffi6 arm64 3.2.1-9 [19.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main arm64 libp11-kit0 arm64 0.23.15-2 [302 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main arm64 libtasn1-6 arm64 4.13-3 [47.8 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main arm64 libgnutls30 arm64 3.6.6-3 [1050 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5support0 arm64 1.17-2 [64.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main arm64 libk5crypto3 arm64 1.17-2 [123 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main arm64 libssl1.1 arm64 1.1.1b-1 [1376 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main arm64 libkrb5-3 arm64 1.17-2 [352 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.17-2 [150 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.6 [622 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1 [69.2 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1 [105 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3 [216 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main arm64 libnghttp2-14 arm64 1.36.0-2 [81.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main arm64 libgpg-error0 arm64 1.35-1 [68.4 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main arm64 libgcrypt20 arm64 1.8.4-5 [487 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main arm64 libssh2-1 arm64 1.8.0-2 [129 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main arm64 libcurl3-gnutls arm64 7.64.0-2 [310 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main arm64 libdeflate0 arm64 1.2-1 [51.4 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main arm64 libgslcblas0 arm64 2.5+dfsg-6 [69.5 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main arm64 libgsl23 arm64 2.5+dfsg-6 [760 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main arm64 libgsl-dev arm64 2.5+dfsg-6 [938 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma5 arm64 5.2.4-1 [149 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main arm64 libhts2 arm64 1.9-10 [278 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main arm64 liblzma-dev arm64 5.2.4-1 [209 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main arm64 libhts-dev arm64 1.9-10 [4337 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main arm64 r-mathlib arm64 3.5.3-1 [1840 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 64.7 MB in 1s (67.6 MB/s) Selecting previously unselected package libbsd0:amd64. 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Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:arm64 (2.28-8) ... Setting up libtasn1-6:arm64 (4.13-3) ... Setting up libc6-dev:arm64 (2.28-8) ... Setting up libbz2-1.0:arm64 (1.0.6-9) ... Setting up libdb5.3:arm64 (5.3.28+dfsg1-0.6) ... Setting up libitm1:arm64 (8.3.0-2) ... Setting up libbz2-dev:arm64 (1.0.6-9) ... Setting up libkeyutils1:arm64 (1.6-6) ... Setting up liblzma5:arm64 (5.2.4-1) ... Setting up libgpg-error0:arm64 (1.35-1) ... Setting up libgslcblas0:arm64 (2.5+dfsg-6) ... Setting up libgcc1:arm64 (1:8.3.0-2) ... Setting up libssl1.1:arm64 (1.1.1b-1) ... Setting up libnghttp2-14:arm64 (1.36.0-2) ... Setting up libunistring2:arm64 (0.9.10-1) ... Setting up libdeflate0:arm64 (1.2-1) ... Setting up libgcrypt20:arm64 (1.8.4-5) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1) ... Setting up libffi6:arm64 (3.2.1-9) ... Setting up libidn2-0:arm64 (2.0.5-1) ... Setting up libcom-err2:arm64 (1.45.0-1) ... Setting up libgomp1:arm64 (8.3.0-2) ... Setting up libkrb5support0:arm64 (1.17-2) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1) ... Setting up dh-autoreconf (19) ... Setting up libgsl23:arm64 (2.5+dfsg-6) ... Setting up libgmp10:arm64 (2:6.1.2+dfsg-4) ... Setting up libp11-kit0:arm64 (0.23.15-2) ... Setting up libatomic1:arm64 (8.3.0-2) ... Setting up libk5crypto3:arm64 (1.17-2) ... Setting up libnettle6:arm64 (3.4.1-1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1) ... Setting up libgfortran5:arm64 (8.3.0-2) ... Setting up liblzma-dev:arm64 (5.2.4-1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up r-mathlib:arm64 (3.5.3-1) ... Setting up libssh2-1:arm64 (1.8.0-2) ... Setting up libkrb5-3:arm64 (1.17-2) ... Setting up libstdc++6:arm64 (8.3.0-2) ... Setting up liblsan0:arm64 (8.3.0-2) ... Setting up libtsan0:arm64 (8.3.0-2) ... Setting up libboost-program-options1.67.0:arm64 (1.67.0-13) ... Setting up libpsl5:arm64 (0.20.2-2) ... Setting up libgsl-dev:arm64 (2.5+dfsg-6) ... Setting up libhogweed4:arm64 (3.4.1-1) ... Setting up debhelper (12.1.1) ... Setting up libicu63:arm64 (63.1-6) ... Setting up libasan5:arm64 (8.3.0-2) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libgnutls30:arm64 (3.6.6-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:arm64 (1.17-2) ... Setting up libboost-iostreams1.67.0:arm64 (1.67.0-13) ... Setting up libubsan1:arm64 (8.3.0-2) ... Setting up libicu-dev:arm64 (63.1-6) ... Setting up libblas-dev:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libboost-regex1.67.0:arm64 (1.67.0-13) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3) ... Setting up libcurl3-gnutls:arm64 (7.64.0-2) ... Setting up libgcc-8-dev:arm64 (8.3.0-2) ... Setting up libstdc++-8-dev:arm64 (8.3.0-2) ... Setting up libboost1.67-dev:arm64 (1.67.0-13) ... Setting up libhts2:arm64 (1.9-10) ... Setting up libboost-program-options1.67-dev:arm64 (1.67.0-13) ... Setting up libboost-regex1.67-dev:arm64 (1.67.0-13) ... Setting up libhts-dev:arm64 (1.9-10) ... Setting up libboost-program-options-dev:arm64 (1.67.0.1) ... Setting up libboost-iostreams1.67-dev:arm64 (1.67.0-13) ... Setting up libboost-iostreams-dev:arm64 (1.67.0.1) ... Setting up sbuild-build-depends-qtltools-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-15 dpkg-dev_1.19.5 g++-8_8.3.0-2 gcc-8_8.3.0-2 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-arm64-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-arm64-cross_8.3.0-2cross1 linux-libc-dev_4.19.28-1 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-15 binutils-aarch64-linux-gnu_2.31.1-15 binutils-common_2.31.1-15 binutils-x86-64-linux-gnu_2.31.1-15 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-2 cpp-8-aarch64-linux-gnu_8.3.0-2cross1 cpp-aarch64-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-arm64_12.6 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-2 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-2 g++-8-aarch64-linux-gnu_8.3.0-2cross1 g++-aarch64-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-2 gcc-8-aarch64-linux-gnu_8.3.0-2cross1 gcc-8-aarch64-linux-gnu-base_8.3.0-2cross1 gcc-8-base_8.3.0-2 gcc-8-cross-base_8.3.0-2cross1 gcc-aarch64-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 icu-devtools_63.1-6 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-2 libasan5-arm64-cross_8.3.0-2cross1 libatomic1_8.3.0-2 libatomic1-arm64-cross_8.3.0-2cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-15 libblas-dev_3.8.0-2 libblas3_3.8.0-2 libblkid1_2.33.1-0.1 libboost-iostreams-dev_1.67.0.1 libboost-iostreams1.67-dev_1.67.0-13 libboost-iostreams1.67.0_1.67.0-13 libboost-program-options-dev_1.67.0.1 libboost-program-options1.67-dev_1.67.0-13 libboost-program-options1.67.0_1.67.0-13 libboost-regex1.67-dev_1.67.0-13 libboost-regex1.67.0_1.67.0-13 libboost1.67-dev_1.67.0-13 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-arm64-cross_2.28-7cross1 libc6-dev_2.28-8 libc6-dev-arm64-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-2 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcurl3-gnutls_7.64.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.248 libdebian-dpkgcross-perl_2.6.15-2 libdeflate0_1.2-1 libdpkg-perl_1.19.5 libeigen3-dev_3.3.7-1 libelf1_0.176-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-2 libgcc-8-dev-arm64-cross_8.3.0-2cross1 libgcc1_1:8.3.0-2 libgcc1-arm64-cross_1:8.3.0-2cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgfortran5_8.3.0-2 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-3 libgomp1_8.3.0-2 libgomp1-arm64-cross_8.3.0-2cross1 libgpg-error0_1.35-1 libgsl-dev_2.5+dfsg-6 libgsl23_2.5+dfsg-6 libgslcblas0_2.5+dfsg-6 libgssapi-krb5-2_1.17-2 libhogweed4_3.4.1-1 libhts-dev_1.9-10 libhts2_1.9-10 libicu-dev_63.1-6 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-2 libitm1-arm64-cross_8.3.0-2cross1 libk5crypto3_1.17-2 libkeyutils1_1.6-6 libkrb5-3_1.17-2 libkrb5support0_1.17-2 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-2 liblsan0-arm64-cross_8.3.0-2cross1 liblz4-1_1.8.3-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-2 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnghttp2-14_1.36.0-2 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libpsl5_0.20.2-2 libquadmath0_8.3.0-2 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.0-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1b-1 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-arm64-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-arm64-cross_8.3.0-2cross1 libsystemd0_241-1 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-2 libtsan0-arm64-cross_8.3.0-2cross1 libubsan1_8.3.0-2 libubsan1-arm64-cross_8.3.0-2cross1 libuchardet0_0.0.6-3 libudev1_241-1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-1 linux-libc-dev-arm64-cross_4.19.20-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 pkg-config_0.29-6 po-debconf_1.0.21 r-mathlib_3.5.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-qtltools-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-2 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Sep 13 15:20:43 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./qtltools_1.1+dfsg-3.dsc dpkg-source: info: extracting qtltools in /<>/qtltools-1.1+dfsg dpkg-source: info: unpacking qtltools_1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking qtltools_1.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile_config.patch dpkg-source: info: applying Spelling_error.patch dpkg-source: info: applying reproducible_build.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-2629e07a-80df-42df-a3eb-73969d02806d SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package qtltools dpkg-buildpackage: info: source version 1.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/qtltools-1.1+dfsg' rm -f debian/upstream.example/examples.tar.xz dh_auto_clean make -j1 clean make[2]: Entering directory '/<>/qtltools-1.1+dfsg' rm -f obj/*.o bin/QTLtools make[2]: Leaving directory '/<>/qtltools-1.1+dfsg' make[1]: Leaving directory '/<>/qtltools-1.1+dfsg' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/qtltools-1.1+dfsg' mkdir -p /<>/qtltools-1.1+dfsg/obj/ mkdir -p /<>/qtltools-1.1+dfsg/bin/ dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc make[2]: Entering directory '/<>/qtltools-1.1+dfsg' aarch64-linux-gnu-g++ -o obj/QTLtools.o -c src/QTLtools.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/data.o -c src/common/data.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/ase_read_genotypes.o -c src/mode_ase/ase_read_genotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_ase/ase_read_genotypes.cpp: In member function 'void ase_data::readGenotypes(std::__cxx11::string, std::__cxx11::string)': src/mode_ase/ase_read_genotypes.cpp:42:27: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("Not compressed with bgzip"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_ase/ase_read_genotypes.cpp:43:3: note: here case idx_load_failed: vrb.error("Impossible to load index file"); ^~~~ src/mode_ase/ase_read_genotypes.cpp:43:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_ase/ase_read_genotypes.cpp:44:3: note: here case file_type_error: vrb.error("Unrecognized file format"); ^~~~ src/mode_ase/ase_read_genotypes.cpp:44:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("Unrecognized file format"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_ase/ase_read_genotypes.cpp:45:3: note: here default: vrb.error("Unknown error when opening"); ^~~~~~~ aarch64-linux-gnu-g++ -o obj/ase_read_sequences.o -c src/mode_ase/ase_read_sequences.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/bamstat_main.o -c src/mode_bamstat/bamstat_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/bamstat_read_annotations.o -c src/mode_bamstat/bamstat_read_annotations.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/bamstat_read_bam.o -c src/mode_bamstat/bamstat_read_bam.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/bamstat_write_output.o -c src/mode_bamstat/bamstat_write_output.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_chunking.o -c src/mode_cis/cis_chunking.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_collapse_phenotypes.o -c src/mode_cis/cis_collapse_phenotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_conditionnal_pass.o -c src/mode_cis/cis_conditionnal_pass.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_cis/cis_conditionnal_pass.cpp:16: src/mode_cis/cis_data.h: In member function 'double cis_data::getCorrelation(std::vector&, std::vector&)': src/mode_cis/cis_data.h:148:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_cis/cis_data.h:149:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/mode_cis/cis_data.h:149:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_cis/cis_data.h:150:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ aarch64-linux-gnu-g++ -o obj/cis_initilization.o -c src/mode_cis/cis_initilization.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_learn_beta.o -c src/mode_cis/cis_learn_beta.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_learn_dof.o -c src/mode_cis/cis_learn_dof.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_main.o -c src/mode_cis/cis_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_management.o -c src/mode_cis/cis_management.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_nominal_pass.o -c src/mode_cis/cis_nominal_pass.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_cis/cis_nominal_pass.cpp:16: src/mode_cis/cis_data.h: In member function 'double cis_data::getCorrelation(std::vector&, std::vector&)': src/mode_cis/cis_data.h:148:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_cis/cis_data.h:149:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/mode_cis/cis_data.h:149:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_cis/cis_data.h:150:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ aarch64-linux-gnu-g++ -o obj/cis_permutation_pass.o -c src/mode_cis/cis_permutation_pass.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_cis/cis_permutation_pass.cpp:16: src/mode_cis/cis_data.h: In member function 'double cis_data::getCorrelation(std::vector&, std::vector&)': src/mode_cis/cis_data.h:148:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_cis/cis_data.h:149:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/mode_cis/cis_data.h:149:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_cis/cis_data.h:150:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ aarch64-linux-gnu-g++ -o obj/cis_read_covariates.o -c src/mode_cis/cis_read_covariates.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_read_genotypes.o -c src/mode_cis/cis_read_genotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_read_phenotypes.o -c src/mode_cis/cis_read_phenotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/cis_read_thresholds.o -c src/mode_cis/cis_read_thresholds.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/correct_main.o -c src/mode_correct/correct_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/correct_management.o -c src/mode_correct/correct_management.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/correct_processing.o -c src/mode_correct/correct_processing.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/correct_read_covariates.o -c src/mode_correct/correct_read_covariates.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_correct/correct_read_covariates.cpp: In member function 'void correct_data::readQTLCovariates(std::__cxx11::string, std::__cxx11::string)': src/mode_correct/correct_read_covariates.cpp:92:59: warning: unused variable 'nsl' [-Wunused-variable] int ngt, ngt_arr = 0, nds, nds_arr = 0, * gt_arr = NULL, nsl, nsl_arr = 0, * sl_arr = NULL; ^~~ src/mode_correct/correct_read_covariates.cpp:92:64: warning: unused variable 'nsl_arr' [-Wunused-variable] int ngt, ngt_arr = 0, nds, nds_arr = 0, * gt_arr = NULL, nsl, nsl_arr = 0, * sl_arr = NULL; ^~~~~~~ src/mode_correct/correct_read_covariates.cpp:92:79: warning: unused variable 'sl_arr' [-Wunused-variable] int ngt, ngt_arr = 0, nds, nds_arr = 0, * gt_arr = NULL, nsl, nsl_arr = 0, * sl_arr = NULL; ^~~~~~ aarch64-linux-gnu-g++ -o obj/extract_main.o -c src/mode_extract/extract_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/extract_managment.o -c src/mode_extract/extract_managment.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/extract_read_data.o -c src/mode_extract/extract_read_data.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_extract/extract_read_data.cpp: In member function 'void extract_data::readVCF(std::__cxx11::string)': src/mode_extract/extract_read_data.cpp:101:27: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("File not compressed with bgzip!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_extract/extract_read_data.cpp:102:3: note: here case idx_load_failed: vrb.error("Impossible to load index file!"); ^~~~ src/mode_extract/extract_read_data.cpp:102:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_extract/extract_read_data.cpp:103:3: note: here case file_type_error: vrb.error("File format not detected by htslib!"); ^~~~ src/mode_extract/extract_read_data.cpp:103:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("File format not detected by htslib!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_extract/extract_read_data.cpp:104:3: note: here default : vrb.error("Unknown error!"); ^~~~~~~ aarch64-linux-gnu-g++ -o obj/extract_write.o -c src/mode_extract/extract_write.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fdensity_main.o -c src/mode_fdensity/fdensity_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fdensity_process.o -c src/mode_fdensity/fdensity_process.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fdensity_read_annotation.o -c src/mode_fdensity/fdensity_read_annotation.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fdensity_read_qtl.o -c src/mode_fdensity/fdensity_read_qtl.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fenrich_process.o -c src/mode_fenrich/fenrich_process.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/genrich_main.o -c src/mode_genrich/genrich_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/genrich_process.o -c src/mode_genrich/genrich_process.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_genrich/genrich_read_reference_genotypes.cpp: In member function 'void genrich_data::readReferenceGenotypes(std::__cxx11::string)': src/mode_genrich/genrich_read_reference_genotypes.cpp:26:27: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("File not compressed with bgzip!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:27:3: note: here case idx_load_failed: vrb.error("Impossible to load index file!"); ^~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:27:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:28:3: note: here case file_type_error: vrb.error("File format not detected by htslib!"); ^~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:28:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("File format not detected by htslib!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:29:3: note: here default : vrb.error("Unknown error!"); ^~~~~~~ aarch64-linux-gnu-g++ -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/match_main.o -c src/mode_match/match_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/match_process.o -c src/mode_match/match_process.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_match/match_read_genotypes.cpp: In member function 'void match_data::readGenotypes(std::__cxx11::string, std::__cxx11::string)': src/mode_match/match_read_genotypes.cpp:40:27: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("Not compressed with bgzip"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_match/match_read_genotypes.cpp:41:3: note: here case idx_load_failed: vrb.error("Impossible to load index file"); ^~~~ src/mode_match/match_read_genotypes.cpp:41:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_match/match_read_genotypes.cpp:42:3: note: here case file_type_error: vrb.error("Unrecognized file format"); ^~~~ src/mode_match/match_read_genotypes.cpp:42:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("Unrecognized file format"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_match/match_read_genotypes.cpp:43:3: note: here default: vrb.error("Unknown error when opening"); ^~~~~~~ aarch64-linux-gnu-g++ -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_pca/pca_read_data.cpp: In member function 'void pca_data::readDataVCF(std::__cxx11::string)': src/mode_pca/pca_read_data.cpp:47:37: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("File not compressed with bgzip!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_pca/pca_read_data.cpp:48:13: note: here case idx_load_failed: vrb.error("Impossible to load index file!"); ^~~~ src/mode_pca/pca_read_data.cpp:48:44: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_pca/pca_read_data.cpp:49:13: note: here case file_type_error: vrb.error("File format not detected by htslib!"); ^~~~ src/mode_pca/pca_read_data.cpp:49:44: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("File format not detected by htslib!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_pca/pca_read_data.cpp:50:13: note: here default : vrb.error("Unknown error!"); ^~~~~~~ aarch64-linux-gnu-g++ -o obj/quan_chunking.o -c src/mode_quan/quan_chunking.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/quan_management.o -c src/mode_quan/quan_management.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/quan_printResults.o -c src/mode_quan/quan_printResults.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/quan_readBAM.o -c src/mode_quan/quan_readBAM.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/quan_readGTF.o -c src/mode_quan/quan_readGTF.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_rtc/rtc_common.cpp:16: src/mode_rtc/rtc_data.h: In member function 'double rtc_data::getCorrelation(std::vector&, std::vector&, int)': src/mode_rtc/rtc_data.h:300:22: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:301:9: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/mode_rtc/rtc_data.h:301:22: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:302:9: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ src/mode_rtc/rtc_data.h: In member function 'double rtc_data::getCorrelation(std::vector&, std::vector&)': src/mode_rtc/rtc_data.h:276:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:277:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/mode_rtc/rtc_data.h:277:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:278:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ aarch64-linux-gnu-g++ -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_management.o -c src/mode_rtc/rtc_management.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_rtc/rtc_management.cpp:16: src/mode_rtc/rtc_data.h: In member function 'double rtc_data::getCorrelation(std::vector&, std::vector&)': src/mode_rtc/rtc_data.h:276:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:277:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/mode_rtc/rtc_data.h:277:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:278:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ aarch64-linux-gnu-g++ -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_rtc/rtc_read_genotypes.cpp: In member function 'void rtc_data::readGenotypesVCF(std::__cxx11::string)': src/mode_rtc/rtc_read_genotypes.cpp:81:27: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("File not compressed with bgzip!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:82:3: note: here case idx_load_failed: vrb.error("Impossible to load index file!"); ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:82:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:83:3: note: here case file_type_error: vrb.error("File format not detected by htslib!"); ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:83:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("File format not detected by htslib!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:84:3: note: here default : vrb.error("Unknown error!"); ^~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp: In member function 'int rtc_data::readGenotypesVCFStats(std::__cxx11::string, std::__cxx11::string&, std::vector >&)': src/mode_rtc/rtc_read_genotypes.cpp:263:37: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("File not compressed with bgzip!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:264:13: note: here case idx_load_failed: vrb.error("Impossible to load index file!"); ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:264:44: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:265:13: note: here case file_type_error: vrb.error("File format not detected by htslib!"); ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:265:44: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("File format not detected by htslib!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:266:13: note: here default : vrb.error("Unknown error!"); ^~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp: In member function 'void rtc_data::scanGenotypesVCF(std::__cxx11::string)': src/mode_rtc/rtc_read_genotypes.cpp:330:37: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("File not compressed with bgzip!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:331:13: note: here case idx_load_failed: vrb.error("Impossible to load index file!"); ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:331:44: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:332:13: note: here case file_type_error: vrb.error("File format not detected by htslib!"); ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:332:44: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("File format not detected by htslib!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:333:13: note: here default : vrb.error("Unknown error!"); ^~~~~~~ aarch64-linux-gnu-g++ -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_rtc/rtc_sampling.cpp:16: src/mode_rtc/rtc_data.h: In member function 'double rtc_data::getCorrelation(std::vector&, std::vector&, int)': src/mode_rtc/rtc_data.h:300:22: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:301:9: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/mode_rtc/rtc_data.h:301:22: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:302:9: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ src/mode_rtc/rtc_data.h: In member function 'double rtc_data::getCorrelation(std::vector&, std::vector&)': src/mode_rtc/rtc_data.h:276:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:277:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/mode_rtc/rtc_data.h:277:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:278:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ aarch64-linux-gnu-g++ -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_trans/trans_analysis_pass.cpp:16: src/mode_trans/trans_data.h: In member function 'double trans_data::fastCorrelation(std::vector&, float*)': src/mode_trans/trans_data.h:122:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += P[i+2] * G[i+2]; ~~~~~^~~~~~~~~~~~~~~~~~ src/mode_trans/trans_data.h:123:2: note: here case 2: sum0 += P[i+1] * G[i+1]; ^~~~ src/mode_trans/trans_data.h:123:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += P[i+1] * G[i+1]; ~~~~~^~~~~~~~~~~~~~~~~~ src/mode_trans/trans_data.h:124:2: note: here case 1: sum0 += P[i+0] * G[i+0]; ^~~~ aarch64-linux-gnu-g++ -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/trans_read_covariates.o -c src/mode_trans/trans_read_covariates.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/trans_read_phenotypes.o -c src/mode_trans/trans_read_phenotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/trans_read_samples.o -c src/mode_trans/trans_read_samples.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/union_main.o -c src/mode_union/union_main.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/union_management.o -c src/mode_union/union_management.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_union/union_read_genotypes.cpp: In member function 'void union_data::readGenotypesVCF(std::__cxx11::string, std::__cxx11::string)': src/mode_union/union_read_genotypes.cpp:76:27: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("File not compressed with bgzip!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:77:3: note: here case idx_load_failed: vrb.error("Impossible to load index file!"); ^~~~ src/mode_union/union_read_genotypes.cpp:77:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:78:3: note: here case file_type_error: vrb.error("File format not detected by htslib!"); ^~~~ src/mode_union/union_read_genotypes.cpp:78:34: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("File format not detected by htslib!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:79:3: note: here default : vrb.error("Unknown error!"); ^~~~~~~ src/mode_union/union_read_genotypes.cpp: In member function 'void union_data::scanGenotypesVCF(std::__cxx11::string)': src/mode_union/union_read_genotypes.cpp:248:37: warning: this statement may fall through [-Wimplicit-fallthrough=] case not_bgzf: vrb.error("File not compressed with bgzip!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:249:13: note: here case idx_load_failed: vrb.error("Impossible to load index file!"); ^~~~ src/mode_union/union_read_genotypes.cpp:249:44: warning: this statement may fall through [-Wimplicit-fallthrough=] case idx_load_failed: vrb.error("Impossible to load index file!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:250:13: note: here case file_type_error: vrb.error("File format not detected by htslib!"); ^~~~ src/mode_union/union_read_genotypes.cpp:250:44: warning: this statement may fall through [-Wimplicit-fallthrough=] case file_type_error: vrb.error("File format not detected by htslib!"); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:251:13: note: here default : vrb.error("Unknown error!"); ^~~~~~~ aarch64-linux-gnu-g++ -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib aarch64-linux-gnu-g++ -o obj/union_union.o -c src/mode_union/union_union.cpp -O2 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>/qtltools-1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_union/union_union.cpp:16: src/mode_union/union_data.h: In member function 'double union_data::getCorrelation(std::vector&, std::vector&)': src/mode_union/union_data.h:189:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_union/union_data.h:190:2: note: here case 2: sum0 += vec1[i+1] * vec2[i+1]; ^~~~ src/mode_union/union_data.h:190:15: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_union/union_data.h:191:2: note: here case 1: sum0 += vec1[i+0] * vec2[i+0]; ^~~~ aarch64-linux-gnu-g++ obj/QTLtools.o obj/data.o obj/ase_main.o obj/ase_read_genotypes.o obj/ase_read_sequences.o obj/bamstat_main.o obj/bamstat_read_annotations.o obj/bamstat_read_bam.o obj/bamstat_write_output.o obj/cis_chunking.o obj/cis_collapse_phenotypes.o obj/cis_conditionnal_pass.o obj/cis_initilization.o obj/cis_learn_beta.o obj/cis_learn_dof.o obj/cis_main.o obj/cis_management.o obj/cis_nominal_pass.o obj/cis_permutation_pass.o obj/cis_read_covariates.o obj/cis_read_genotypes.o obj/cis_read_phenotypes.o obj/cis_read_thresholds.o obj/correct_main.o obj/correct_management.o obj/correct_processing.o obj/correct_read_covariates.o obj/extract_main.o obj/extract_managment.o obj/extract_read_data.o obj/extract_write.o obj/fdensity_main.o obj/fdensity_process.o obj/fdensity_read_annotation.o obj/fdensity_read_qtl.o obj/fenrich_main.o obj/fenrich_management.o obj/fenrich_process.o obj/fenrich_read_annotation.o obj/fenrich_read_qtl.o obj/fenrich_read_tss.o obj/genrich_binning_process.o obj/genrich_main.o obj/genrich_process.o obj/genrich_read_auxillliary_data.o obj/genrich_read_phenotypes.o obj/genrich_read_reference_genotypes.o obj/genrich_routines.o obj/match_main.o obj/match_managment.o obj/match_process.o obj/match_read_genotypes.o obj/match_read_sequences.o obj/pca_main.o obj/pca_management.o obj/pca_pca.o obj/pca_read_data.o obj/quan_chunking.o obj/quan_main.o obj/quan_management.o obj/quan_printResults.o obj/quan_readBAM.o obj/quan_readGTF.o obj/rtc_chunking.o obj/rtc_collapse_phenotypes.o obj/rtc_common.o obj/rtc_gwas_cis.o obj/rtc_gwas_trans.o obj/rtc_initilization.o obj/rtc_main.o obj/rtc_management.o obj/rtc_mergeQTL_cis.o obj/rtc_mergeQTL_trans.o obj/rtc_read_covariates.o obj/rtc_read_genotypes.o obj/rtc_read_get_hotspots.o obj/rtc_read_phenotypes.o obj/rtc_sampling.o obj/trans_adjust.o obj/trans_analysis_pass.o obj/trans_chunking.o obj/trans_initilization.o obj/trans_learn_beta.o obj/trans_main.o obj/trans_managment.o obj/trans_read_covariates.o obj/trans_read_phenotypes.o obj/trans_read_samples.o obj/union_initilization.o obj/union_main.o obj/union_management.o obj/union_read_covariates.o obj/union_read_genotypes.o obj/union_read_get_hotspots.o obj/union_read_phenotypes.o obj/union_union.o -lRmath -lhts -lboost_iostreams -lboost_program_options -o bin/QTLtools -lz -lgsl -lblas -lbz2 -lm -lpthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/qtltools-1.1+dfsg' make[1]: Leaving directory '/<>/qtltools-1.1+dfsg' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>/qtltools-1.1+dfsg' cd debian/upstream.example && find -type f | LC_ALL=C sort | tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz ./genes.50percent.chr22.bed.gz ./genes.50percent.chr22.bed.gz.tbi ./genes.covariates.pc50.txt.gz ./genes.simulated.chr22.bed.gz ./genes.simulated.chr22.bed.gz.tbi ./genotypes.chr22.vcf.gz ./genotypes.chr22.vcf.gz.tbi dh_install make[1]: Leaving directory '/<>/qtltools-1.1+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libbz2.so.1.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libz.so.1 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'qtltools' in '../qtltools_1.1+dfsg-3_arm64.deb'. dpkg-deb: building package 'qtltools-dbgsym' in '../qtltools-dbgsym_1.1+dfsg-3_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../qtltools_1.1+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-03-15T14:51:42Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-dxsW1r/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-qtltools-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-dxsW1r/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dxsW1r/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-dxsW1r/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dxsW1r/apt_archive ./ Sources [817 B] Get:5 copy:/<>/resolver-dxsW1r/apt_archive ./ Packages [888 B] Fetched 2668 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 7783 kB of archives. After this operation, 20.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-dxsW1r/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-1 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-1 [1531 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.10.0 [1195 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7783 kB in 0s (50.2 MB/s) Selecting previously unselected package netbase. (Reading database ... 33888 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.13-1_amd64.deb ... Unpacking gpgconf (2.2.13-1) ... Selecting previously unselected package libsqlite3-0:amd64. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ qtltools_1.1+dfsg-3_arm64.changes: ---------------------------------- Format: 1.8 Date: Thu, 13 Sep 2018 16:07:01 +0200 Source: qtltools Binary: qtltools qtltools-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 1.1+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: qtltools - Tool set for molecular QTL discovery and analysis Changes: qtltools (1.1+dfsg-3) unstable; urgency=medium . * Team upload. . [ Dylan Aïssi ] * Fix registries ref. * Update metadata references. * Canonical Vcs-Browser. * Bump Standards-Version to 4.1.1 (no changes needed). . [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: cef083bf56040f7d52b7cb87245310a6ca863ebb 165212484 qtltools-dbgsym_1.1+dfsg-3_arm64.deb 2fa0ffe90170d4c664bde0b9503f4d57f9f14976 5908 qtltools_1.1+dfsg-3_arm64.buildinfo 79f95f2d751a6ad8bf5f7f72d32bab61eb94d924 558492 qtltools_1.1+dfsg-3_arm64.deb Checksums-Sha256: 1b77dfcd7c23f5a259b35490c0848be5549e073251b9e610dffe7896c9db81cb 165212484 qtltools-dbgsym_1.1+dfsg-3_arm64.deb c471caa1e4f9cc22fac88f2691ed1a000829ce0ade0fa8bdb05af4eb39ddcf2f 5908 qtltools_1.1+dfsg-3_arm64.buildinfo 7ffab149f29142f78aaa95467b849e50bb099bb1d844b72d1d6b02a0b4273f9d 558492 qtltools_1.1+dfsg-3_arm64.deb Files: e14f679c05a706a05f1b9d6836915a2b 165212484 debug optional qtltools-dbgsym_1.1+dfsg-3_arm64.deb 93aa1a7e7f8fe8f8a97f536baf6a70e0 5908 science optional qtltools_1.1+dfsg-3_arm64.buildinfo 89aaf4d3b7c3c01f8ebe694b3dad2ee8 558492 science optional qtltools_1.1+dfsg-3_arm64.deb 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+------------------------------------------------------------------------------+ qtltools-dbgsym_1.1+dfsg-3_arm64.deb ------------------------------------ new Debian package, version 2.0. size 165212484 bytes: control archive=540 bytes. 383 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: qtltools-dbgsym Source: qtltools Version: 1.1+dfsg-3 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 165577 Depends: qtltools (= 1.1+dfsg-3) Section: debug Priority: optional Description: debug symbols for qtltools Build-Ids: cfb7c78c8de46942eda2bd8d4370d653345cf234 drwxr-xr-x root/root 0 2018-09-13 14:07 ./ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/lib/ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/lib/debug/.build-id/cf/ -rw-r--r-- root/root 169539720 2018-09-13 14:07 ./usr/lib/debug/.build-id/cf/b7c78c8de46942eda2bd8d4370d653345cf234.debug drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/share/ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-09-13 14:07 ./usr/share/doc/qtltools-dbgsym -> qtltools qtltools_1.1+dfsg-3_arm64.deb ----------------------------- new Debian package, version 2.0. size 558492 bytes: control archive=956 bytes. 966 bytes, 17 lines control 262 bytes, 4 lines md5sums Package: qtltools Version: 1.1+dfsg-3 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 2461 Depends: libblas3 | libblas.so.3, libboost-iostreams1.67.0, libboost-program-options1.67.0, libbz2-1.0, libc6 (>= 2.17), libgcc1 (>= 1:4.0), libgsl23 (>= 2.5), libhts2 (>= 1.0), libstdc++6 (>= 5.2), r-mathlib, zlib1g (>= 1:1.1.4) Suggests: qtltools-example Section: science Priority: optional Homepage: https://qtltools.github.io/qtltools/ Description: Tool set for molecular QTL discovery and analysis QTLtools is a tool set for molecular Quantitative Trait Loci (QTL) discovery and analysis. It allows user to go from the raw sequence data to collection of molecular QTL in few easy-to-perform steps. QTLtools contains multiple methods to prepare the data, to discover proximal and distal molecular QTL and to finally integrate them with GWAS variants and functional annotations of the genome. drwxr-xr-x root/root 0 2018-09-13 14:07 ./ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/bin/ -rwxr-xr-x root/root 2504840 2018-09-13 14:07 ./usr/bin/QTLtools drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/share/ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/share/doc/qtltools/ -rw-r--r-- root/root 625 2018-09-13 14:07 ./usr/share/doc/qtltools/changelog.Debian.gz -rw-r--r-- root/root 1358 2018-09-13 14:07 ./usr/share/doc/qtltools/copyright drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/share/man/ drwxr-xr-x root/root 0 2018-09-13 14:07 ./usr/share/man/man1/ -rw-r--r-- root/root 1601 2018-09-13 14:07 ./usr/share/man/man1/QTLtools.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3137056 Build-Time: 3156 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 29 Job: qtltools_1.1+dfsg-3 Lintian: pass Machine Architecture: amd64 Package: qtltools Package-Time: 3198 Source-Version: 1.1+dfsg-3 Space: 3137056 Status: successful Version: 1.1+dfsg-3 -------------------------------------------------------------------------------- Finished at 2019-03-15T14:51:42Z Build needed 00:53:18, 3137056k disk space