sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | qtltools 1.2+dfsg-2 (mips64el) Tue, 17 Mar 2020 23:19:18 +0000 | +==============================================================================+ Package: qtltools Version: 1.2+dfsg-2 Source Version: 1.2+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-033147dc-a398-42ad-a4be-9b53fd96644f' with '<>' I: NOTICE: Log filtering will replace 'build/qtltools-cYZUuP/resolver-euchHc' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-17-0817.03.pdiff [3615 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-17-1417.03.pdiff [6311 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-17-2013.10.pdiff [7442 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-17-2013.10.pdiff [7442 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-17-0817.03.pdiff [10.5 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-17-1417.03.pdiff [9941 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-17-2013.10.pdiff [7209 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-17-2013.10.pdiff [7209 B] Get:10 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [7905 kB] Fetched 8152 kB in 1s (5548 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'qtltools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/qtltools.git Please use: git clone https://salsa.debian.org/med-team/qtltools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 13.7 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main qtltools 1.2+dfsg-2 (dsc) [2171 B] Get:2 http://debian.oregonstate.edu/debian unstable/main qtltools 1.2+dfsg-2 (tar) [105 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main qtltools 1.2+dfsg-2 (diff) [13.6 MB] Fetched 13.7 MB in 0s (90.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/qtltools-cYZUuP/qtltools-1.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/qtltools-cYZUuP' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 12~), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper (>= 12~), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [458 B] Get:5 copy:/<>/apt_archive ./ Packages [549 B] Fetched 1964 B in 0s (92.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libblas-dev:mips64el libblas3:mips64el libboost-iostreams-dev:mips64el libboost-iostreams1.67-dev:mips64el libboost-iostreams1.67.0:mips64el libboost-program-options-dev:mips64el libboost-program-options1.67-dev:mips64el libboost-program-options1.67.0:mips64el libboost-regex1.67-dev:mips64el libboost-regex1.67.0:mips64el libboost1.67-dev:mips64el libbrotli1:mips64el libbsd0 libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:mips64el libeigen3-dev libelf1 libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc1-mips64el-cross libgcrypt20:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgsl-dev:mips64el libgsl23:mips64el libgslcblas0:mips64el libgssapi-krb5-2:mips64el libhogweed5:mips64el libhts-dev:mips64el libhts3:mips64el libicu-dev:mips64el libicu63 libicu63:mips64el libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el libldap-common liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libnettle7:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libssh2-1:mips64el libssl1.1:mips64el libstdc++-9-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtool libuchardet0 libunistring2:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db pkg-config po-debconf r-mathlib:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mips64el-linux-gnuabi64 gcc-9-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc:mips64el libboost1.67-doc:mips64el libboost-atomic1.67-dev:mips64el libboost-chrono1.67-dev:mips64el libboost-container1.67-dev:mips64el libboost-contract1.67-dev:mips64el libboost-date-time1.67-dev:mips64el libboost-exception1.67-dev:mips64el libboost-filesystem1.67-dev:mips64el libboost-graph1.67-dev:mips64el libboost-graph-parallel1.67-dev:mips64el libboost-locale1.67-dev:mips64el libboost-log1.67-dev:mips64el libboost-math1.67-dev:mips64el libboost-mpi1.67-dev:mips64el libboost-mpi-python1.67-dev:mips64el libboost-numpy1.67-dev:mips64el libboost-python1.67-dev:mips64el libboost-random1.67-dev:mips64el libboost-serialization1.67-dev:mips64el libboost-signals1.67-dev:mips64el libboost-stacktrace1.67-dev:mips64el libboost-system1.67-dev:mips64el libboost-test1.67-dev:mips64el libboost-thread1.67-dev:mips64el libboost-timer1.67-dev:mips64el libboost-type-erasure1.67-dev:mips64el libboost-wave1.67-dev:mips64el libboost1.67-tools-dev:mips64el libmpfrc++-dev:mips64el libntl-dev:mips64el glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el libeigen3-doc libmpfrc++-dev rng-tools:mips64el gnutls-bin:mips64el gsl-ref-psdoc:mips64el | gsl-doc-pdf:mips64el | gsl-doc-info:mips64el | gsl-ref-html:mips64el krb5-doc:mips64el krb5-user:mips64el icu-doc:mips64el liblzma-doc:mips64el libstdc++-9-doc libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips64el ca-certificates:mips64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:mips64el krb5-locales:mips64el publicsuffix:mips64el libsasl2-modules:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl r-base-core:mips64el r-base-dev:mips64el The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libblas-dev:mips64el libblas3:mips64el libboost-iostreams-dev:mips64el libboost-iostreams1.67-dev:mips64el libboost-iostreams1.67.0:mips64el libboost-program-options-dev:mips64el libboost-program-options1.67-dev:mips64el libboost-program-options1.67.0:mips64el libboost-regex1.67-dev:mips64el libboost-regex1.67.0:mips64el libboost1.67-dev:mips64el libbrotli1:mips64el libbsd0 libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:mips64el libeigen3-dev libelf1 libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc1-mips64el-cross libgcrypt20:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgsl-dev:mips64el libgsl23:mips64el libgslcblas0:mips64el libgssapi-krb5-2:mips64el libhogweed5:mips64el libhts-dev:mips64el libhts3:mips64el libicu-dev:mips64el libicu63 libicu63:mips64el libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el libldap-common liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libnettle7:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libssh2-1:mips64el libssl1.1:mips64el libstdc++-9-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtool libuchardet0 libunistring2:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db pkg-config po-debconf r-mathlib:mips64el sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 147 newly installed, 0 to remove and 0 not upgraded. Need to get 122 MB of archives. After this operation, 601 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10-20200312-2 [196 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.3.0-3 [196 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.34-2cross5 [2313 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.15-1 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-2 [2633 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-3 [1677 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-3 [10.7 MB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64-base amd64 9.2.1-24cross1 [195 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [6464 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [16.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.2.1-24cross1 [191 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.29-8cross1 [1324 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips64el-cross all 1:9.2.1-24cross1 [69.2 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 9.2.1-24cross1 [76.6 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 9.2.1-24cross1 [7436 B] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mips64el-cross all 9.2.1-24cross1 [247 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [6811 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1484 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 9.2.1-24cross1 [398 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.4.8-1cross1 [1139 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.29-8cross1 [2456 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mips64el-cross all 9.2.1-24cross1 [1725 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [7046 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1192 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-4 [709 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.8 [6704 B] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.1-1 [1341 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 icu-devtools amd64 63.2-3 [189 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10-20200312-2 [69.6 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.15-1 [95.5 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.30-2 [2553 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10-20200312-2 [7520 B] Get:84 http://debian.oregonstate.edu/debian unstable/main mips64el libblas3 mips64el 3.9.0-1 [109 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mips64el libblas-dev mips64el 3.9.0-1 [126 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10-20200312-2 [89.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.3.0-3 [247 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10-20200312-2 [434 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.4.19-1 [1068 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.15-1 [118 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.30-2 [2475 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.3.0-3 [1712 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libboost1.67-dev mips64el 1.67.0-17 [8389 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el libicu63 mips64el 63.2-3 [8187 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-regex1.67.0 mips64el 1.67.0-17 [472 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mips64el libicu-dev mips64el 63.2-3 [9355 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-regex1.67-dev mips64el 1.67.0-17 [586 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.8-2 [47.3 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-iostreams1.67.0 mips64el 1.67.0-17 [247 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-iostreams1.67-dev mips64el 1.67.0-17 [259 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-iostreams-dev mips64el 1.67.0.2+b1 [4260 B] Get:103 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-program-options1.67.0 mips64el 1.67.0-17 [333 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-program-options1.67-dev mips64el 1.67.0-17 [397 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-program-options-dev mips64el 1.67.0.2+b1 [4288 B] Get:106 http://debian.oregonstate.edu/debian unstable/main mips64el libbrotli1 mips64el 1.0.7-6 [273 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-dev mips64el 1.0.8-2 [33.2 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.45.5-2 [71.2 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main mips64el libgmp10 mips64el 2:6.2.0+dfsg-4 [241 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main mips64el libnettle7 mips64el 3.5.1+really3.5.1-2 [236 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mips64el libhogweed5 mips64el 3.5.1+really3.5.1-2 [132 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main mips64el libunistring2 mips64el 0.9.10-2 [376 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mips64el libidn2-0 mips64el 2.3.0-1 [84.5 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main mips64el libffi7 mips64el 3.3-3 [22.5 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mips64el libp11-kit0 mips64el 0.23.20-1 [269 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main mips64el libtasn1-6 mips64el 4.16.0-2 [52.6 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mips64el libgnutls30 mips64el 3.6.12-2 [1066 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6.1-2 [15.0 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.17-6 [62.6 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.17-6 [121 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1d-2 [1140 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.17-6 [333 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.17-6 [141 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main mips64el libdb5.3 mips64el 5.3.28+dfsg1-0.6 [597 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-modules-db mips64el 2.1.27+dfsg-2 [68.3 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-2 mips64el 2.1.27+dfsg-2 [102 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.49+dfsg-2 [92.0 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main mips64el libldap-2.4-2 mips64el 2.4.49+dfsg-2 [206 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main mips64el libnghttp2-14 mips64el 1.40.0-1 [80.8 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main mips64el libpsl5 mips64el 0.21.0-1 [54.9 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b1 [56.0 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main mips64el libgpg-error0 mips64el 1.37-1 [68.9 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main mips64el libgcrypt20 mips64el 1.8.5-5 [497 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main mips64el libssh2-1 mips64el 1.8.0-2.1 [134 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl3-gnutls mips64el 7.68.0-1 [296 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate0 mips64el 1.5-3 [50.2 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libeigen3-dev all 3.3.7-2 [850 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main mips64el libgslcblas0 mips64el 2.5+dfsg-6+b1 [81.4 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main mips64el libgsl23 mips64el 2.5+dfsg-6+b1 [824 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main mips64el libgsl-dev mips64el 2.5+dfsg-6+b1 [1166 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma5 mips64el 5.2.4-1+b1 [151 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main mips64el libhts3 mips64el 1.10.2-3 [346 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma-dev mips64el 5.2.4-1+b1 [214 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main mips64el libhts-dev mips64el 1.10.2-3 [4862 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main mips64el r-mathlib mips64el 3.6.3-1 [2005 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 122 MB in 1s (86.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12838 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../006-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:mips64el. Preparing to unpack .../007-gcc-10-base_10-20200312-2_mips64el.deb ... Unpacking gcc-10-base:mips64el (10-20200312-2) ... Selecting previously unselected package gcc-9-base:mips64el. Preparing to unpack .../008-gcc-9-base_9.3.0-3_mips64el.deb ... Unpacking gcc-9-base:mips64el (9.3.0-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../011-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../015-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. 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Preparing to unpack .../029-cpp-9-mips64el-linux-gnuabi64_9.2.1-24cross1_amd64.deb ... Unpacking cpp-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Selecting previously unselected package cpp-mips64el-linux-gnuabi64. Preparing to unpack .../030-cpp-mips64el-linux-gnuabi64_4%3a9.2.1-4.1_amd64.deb ... Unpacking cpp-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Selecting previously unselected package cross-config. Preparing to unpack .../031-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base-mipsen. Preparing to unpack .../032-gcc-9-cross-base-mipsen_9.2.1-24cross1_all.deb ... Unpacking gcc-9-cross-base-mipsen (9.2.1-24cross1) ... Selecting previously unselected package libc6-mips64el-cross. Preparing to unpack .../033-libc6-mips64el-cross_2.29-8cross1_all.deb ... Unpacking libc6-mips64el-cross (2.29-8cross1) ... Selecting previously unselected package libgcc1-mips64el-cross. Preparing to unpack .../034-libgcc1-mips64el-cross_1%3a9.2.1-24cross1_all.deb ... Unpacking libgcc1-mips64el-cross (1:9.2.1-24cross1) ... Selecting previously unselected package libgomp1-mips64el-cross. Preparing to unpack .../035-libgomp1-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libgomp1-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package libatomic1-mips64el-cross. Preparing to unpack .../036-libatomic1-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libatomic1-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package libgcc-9-dev-mips64el-cross. Preparing to unpack .../037-libgcc-9-dev-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libgcc-9-dev-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package gcc-9-mips64el-linux-gnuabi64. Preparing to unpack .../038-gcc-9-mips64el-linux-gnuabi64_9.2.1-24cross1_amd64.deb ... Unpacking gcc-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Selecting previously unselected package gcc-mips64el-linux-gnuabi64. Preparing to unpack .../039-gcc-mips64el-linux-gnuabi64_4%3a9.2.1-4.1_amd64.deb ... Unpacking gcc-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Selecting previously unselected package libstdc++6-mips64el-cross. Preparing to unpack .../040-libstdc++6-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libstdc++6-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package linux-libc-dev-mips64el-cross. Preparing to unpack .../041-linux-libc-dev-mips64el-cross_5.4.8-1cross1_all.deb ... Unpacking linux-libc-dev-mips64el-cross (5.4.8-1cross1) ... Selecting previously unselected package libc6-dev-mips64el-cross. Preparing to unpack .../042-libc6-dev-mips64el-cross_2.29-8cross1_all.deb ... Unpacking libc6-dev-mips64el-cross (2.29-8cross1) ... Selecting previously unselected package libstdc++-9-dev-mips64el-cross. Preparing to unpack .../043-libstdc++-9-dev-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libstdc++-9-dev-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package g++-9-mips64el-linux-gnuabi64. Preparing to unpack .../044-g++-9-mips64el-linux-gnuabi64_9.2.1-24cross1_amd64.deb ... Unpacking g++-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Selecting previously unselected package g++-mips64el-linux-gnuabi64. Preparing to unpack .../045-g++-mips64el-linux-gnuabi64_4%3a9.2.1-4.1_amd64.deb ... Unpacking g++-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../046-libconfig-inifiles-perl_3.000002-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000002-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../047-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../048-libicu63_63.2-3_amd64.deb ... Unpacking libicu63:amd64 (63.2-3) ... 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Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up icu-devtools (63.2-3) ... Setting up pkg-config (0.29-6) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.15-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-2) ... Setting up linux-libc-dev-mips64el-cross (5.4.8-1cross1) ... Setting up cpp-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libgomp1-mips64el-cross (9.2.1-24cross1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-4) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:mips64el (9.3.0-3) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libatomic1-mips64el-cross (9.2.1-24cross1) ... Setting up libgcc1-mips64el-cross (1:9.2.1-24cross1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-3) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up libc6-dev-mips64el-cross (2.29-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-2) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.3.0-3) ... Setting up autoconf (2.69-11.1) ... Setting up libstdc++6-mips64el-cross (9.2.1-24cross1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libgcc-9-dev-mips64el-cross (9.2.1-24cross1) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libstdc++-9-dev-mips64el-cross (9.2.1-24cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mips64el (12.8) ... Setting up libcrypt1:mips64el (1:4.4.15-1) ... Setting up libgcc-s1:mips64el (10-20200312-2) ... Setting up dh-autoreconf (19) ... Setting up libc6:mips64el (2.30-2) ... Setting up libnettle7:mips64el (3.5.1+really3.5.1-2) ... Setting up libcrypt-dev:mips64el (1:4.4.15-1) ... Setting up libtasn1-6:mips64el (4.16.0-2) ... Setting up r-mathlib:mips64el (3.6.3-1) ... Setting up libc6-dev:mips64el (2.30-2) ... Setting up libbz2-1.0:mips64el (1.0.8-2) ... Setting up libdb5.3:mips64el (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:mips64el (10-20200312-2) ... Setting up libbz2-dev:mips64el (1.0.8-2) ... Setting up libboost-program-options1.67.0:mips64el (1.67.0-17) ... Setting up libkeyutils1:mips64el (1.6.1-2) ... Setting up liblzma5:mips64el (5.2.4-1+b1) ... Setting up libgpg-error0:mips64el (1.37-1) ... Setting up libgslcblas0:mips64el (2.5+dfsg-6+b1) ... Setting up libssl1.1:mips64el (1.1.1d-2) ... Setting up libbrotli1:mips64el (1.0.7-6) ... Setting up libffi7:mips64el (3.3-3) ... Setting up libnghttp2-14:mips64el (1.40.0-1) ... Setting up libunistring2:mips64el (0.9.10-2) ... Setting up libdeflate0:mips64el (1.5-3) ... Setting up libgcrypt20:mips64el (1.8.5-5) ... Setting up debhelper (12.9) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libidn2-0:mips64el (2.3.0-1) ... Setting up libcom-err2:mips64el (1.45.5-2) ... Setting up libgomp1:mips64el (10-20200312-2) ... Setting up libicu63:mips64el (63.2-3) ... Setting up libkrb5support0:mips64el (1.17-6) ... Setting up libsasl2-modules-db:mips64el (2.1.27+dfsg-2) ... Setting up libblas3:mips64el (3.9.0-1) ... update-alternatives: using /usr/lib/mips64el-linux-gnuabi64/blas/libblas.so.3 to provide /usr/lib/mips64el-linux-gnuabi64/libblas.so.3 (libblas.so.3-mips64el-linux-gnuabi64) in auto mode Setting up libgsl23:mips64el (2.5+dfsg-6+b1) ... Setting up libgmp10:mips64el (2:6.2.0+dfsg-4) ... Setting up libp11-kit0:mips64el (0.23.20-1) ... Setting up libatomic1:mips64el (10-20200312-2) ... Setting up libboost-iostreams1.67.0:mips64el (1.67.0-17) ... Setting up libk5crypto3:mips64el (1.17-6) ... Setting up libsasl2-2:mips64el (2.1.27+dfsg-2) ... Setting up liblzma-dev:mips64el (5.2.4-1+b1) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Setting up libssh2-1:mips64el (1.8.0-2.1) ... Setting up libkrb5-3:mips64el (1.17-6) ... Setting up libicu-dev:mips64el (63.2-3) ... Setting up libblas-dev:mips64el (3.9.0-1) ... update-alternatives: using /usr/lib/mips64el-linux-gnuabi64/blas/libblas.so to provide /usr/lib/mips64el-linux-gnuabi64/libblas.so (libblas.so-mips64el-linux-gnuabi64) in auto mode Setting up libpsl5:mips64el (0.21.0-1) ... Setting up libgsl-dev:mips64el (2.5+dfsg-6+b1) ... Setting up libboost-regex1.67.0:mips64el (1.67.0-17) ... Setting up libhogweed5:mips64el (3.5.1+really3.5.1-2) ... Setting up libgcc-9-dev:mips64el (9.3.0-3) ... Setting up libgnutls30:mips64el (3.6.12-2) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libgssapi-krb5-2:mips64el (1.17-6) ... Setting up libstdc++-9-dev:mips64el (9.3.0-3) ... Setting up libldap-2.4-2:mips64el (2.4.49+dfsg-2) ... Setting up libcurl3-gnutls:mips64el (7.68.0-1) ... Setting up libboost1.67-dev:mips64el (1.67.0-17) ... Setting up libhts3:mips64el (1.10.2-3) ... Setting up libboost-program-options1.67-dev:mips64el (1.67.0-17) ... Setting up libboost-regex1.67-dev:mips64el (1.67.0-17) ... Setting up libhts-dev:mips64el (1.10.2-3) ... Setting up libboost-program-options-dev:mips64el (1.67.0.2+b1) ... Setting up libboost-iostreams1.67-dev:mips64el (1.67.0-17) ... Setting up libboost-iostreams-dev:mips64el (1.67.0.2+b1) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.30-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-4 dpkg-dev_1.19.7 g++-9_9.3.0-3 gcc-8_8.4.0-1 gcc-9_9.3.0-3 libc6-dev_2.30-2 libstdc++-9-dev_9.3.0-3 libstdc++-9-dev-mips64el-cross_9.2.1-24cross1 libstdc++6_10-20200312-2 libstdc++6-mips64el-cross_9.2.1-24cross1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_2.0.0 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-4 binutils-common_2.34-4 binutils-mips64el-linux-gnuabi64_2.34-2cross5 binutils-x86-64-linux-gnu_2.34-4 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-1 cpp-9_9.3.0-3 cpp-9-mips64el-linux-gnuabi64_9.2.1-24cross1 cpp-mips64el-linux-gnuabi64_4:9.2.1-4.1 cross-config_2.6.15-3 crossbuild-essential-mips64el_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-3 g++-9-mips64el-linux-gnuabi64_9.2.1-24cross1 g++-mips64el-linux-gnuabi64_4:9.2.1-4.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200312-2 gcc-8_8.4.0-1 gcc-8-base_8.4.0-1 gcc-9_9.3.0-3 gcc-9-base_9.3.0-3 gcc-9-cross-base-mipsen_9.2.1-24cross1 gcc-9-mips64el-linux-gnuabi64_9.2.1-24cross1 gcc-9-mips64el-linux-gnuabi64-base_9.2.1-24cross1 gcc-mips64el-linux-gnuabi64_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-3 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-1 hostname_3.23 icu-devtools_63.2-3 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.0.0 libarchive-zip-perl_1.68-1 libasan5_9.3.0-3 libatomic1_10-20200312-2 libatomic1-mips64el-cross_9.2.1-24cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-4 libblas-dev_3.9.0-1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libboost-iostreams-dev_1.67.0.2+b1 libboost-iostreams1.67-dev_1.67.0-17 libboost-iostreams1.67.0_1.67.0-17 libboost-program-options-dev_1.67.0.2+b1 libboost-program-options1.67-dev_1.67.0-17 libboost-program-options1.67.0_1.67.0-17 libboost-regex1.67-dev_1.67.0-17 libboost-regex1.67.0_1.67.0-17 libboost1.67-dev_1.67.0-17 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.30-2 libc-dev-bin_2.30-2 libc6_2.30-2 libc6-dev_2.30-2 libc6-dev-mips64el-cross_2.29-8cross1 libc6-mips64el-cross_2.29-8cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10-20200312-2 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-4 libctf0_2.34-4 libcurl3-gnutls_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.5-3 libdpkg-perl_1.19.7 libeigen3-dev_3.3.7-2 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.4.0-1 libgcc-9-dev_9.3.0-3 libgcc-9-dev-mips64el-cross_9.2.1-24cross1 libgcc-s1_10-20200312-2 libgcc1_1:10-20200312-2 libgcc1-mips64el-cross_1:9.2.1-24cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200312-2 libgomp1-mips64el-cross_9.2.1-24cross1 libgpg-error0_1.37-1 libgsl-dev_2.5+dfsg-6+b1 libgsl23_2.5+dfsg-6+b1 libgslcblas0_2.5+dfsg-6+b1 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-3 libhts3_1.10.2-3 libicu-dev_63.2-3 libicu63_63.2-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10-20200312-2 libk5crypto3_1.17-6 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-2 liblocale-gettext-perl_1.07-4 liblsan0_10-20200312-2 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-1 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 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-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: qtltools Binary: qtltools, qtltools-example Architecture: any all Version: 1.2+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://qtltools.github.io/qtltools/ Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/qtltools Vcs-Git: https://salsa.debian.org/med-team/qtltools.git Testsuite: autopkgtest Build-Depends: debhelper (>= 12~), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev Package-List: qtltools deb science optional arch=any qtltools-example deb doc optional arch=all Checksums-Sha1: c55848d3ccaca5d1ae4def2ba687fdd7dc1e0d3f 104664 qtltools_1.2+dfsg.orig.tar.xz a2a0dde011198bc424459a69c5b2427c1743e67c 13557168 qtltools_1.2+dfsg-2.debian.tar.xz Checksums-Sha256: b9f14fabfd007b1f57edf1b08c45b2e6c2c260d656c40968c74ca186a3fc760d 104664 qtltools_1.2+dfsg.orig.tar.xz 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K/TYz3e5ljJRNK0w++eRY6KxQorrHQoh+EqJI2l0qrKxnmZKNBIhefaN7bKwMX+V j8Rx8coRCX2rtqMcqbJmH4yx6uCGRV8IpV4I5CVagVnMIH1iTRw= =WL0u -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Dec 29 16:18:48 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./qtltools_1.2+dfsg-2.dsc dpkg-source: info: extracting qtltools in /<> dpkg-source: info: unpacking qtltools_1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking qtltools_1.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile_config.patch dpkg-source: info: applying Spelling_error.patch dpkg-source: info: applying reproducible_build.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-033147dc-a398-42ad-a4be-9b53fd96644f SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package qtltools dpkg-buildpackage: info: source version 1.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f debian/upstream.example/examples.tar.xz dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f obj/*.o bin/QTLtools make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p /<>/obj/ mkdir -p /<>/bin/ dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mips64el-linux-gnuabi64-pkg-config CXX=mips64el-linux-gnuabi64-g\+\+ CC=mips64el-linux-gnuabi64-gcc make[2]: Entering directory '/<>' mips64el-linux-gnuabi64-g++ -o obj/QTLtools.o -c src/QTLtools.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/ase_read_genotypes.o -c src/mode_ase/ase_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_ase/ase_read_genotypes.cpp: In member function ‘void ase_data::readGenotypes(std::string, std::string)’: src/mode_ase/ase_read_genotypes.cpp:42:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 42 | case not_bgzf: vrb.error("Not compressed with bgzip"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_ase/ase_read_genotypes.cpp:43:3: note: here 43 | case idx_load_failed: vrb.error("Impossible to load index file"); | ^~~~ src/mode_ase/ase_read_genotypes.cpp:43:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 43 | case idx_load_failed: vrb.error("Impossible to load index file"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_ase/ase_read_genotypes.cpp:44:3: note: here 44 | case file_type_error: vrb.error("Unrecognized file format"); | ^~~~ src/mode_ase/ase_read_genotypes.cpp:44:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 44 | case file_type_error: vrb.error("Unrecognized file format"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_ase/ase_read_genotypes.cpp:45:3: note: here 45 | default: vrb.error("Unknown error when opening"); | ^~~~~~~ mips64el-linux-gnuabi64-g++ -o obj/ase_read_sequences.o -c src/mode_ase/ase_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_ase/ase_read_sequences.cpp: In member function ‘void ase_data::readSequences(std::string, std::string)’: src/mode_ase/ase_read_sequences.cpp:83:18: warning: ignoring return value of ‘int bcf_hdr_write(htsFile*, bcf_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] 83 | bcf_hdr_write(bcf_fd, bcf_hdr); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -o obj/bamstat_main.o -c src/mode_bamstat/bamstat_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/bamstat_read_annotations.o -c src/mode_bamstat/bamstat_read_annotations.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/bamstat_read_bam.o -c src/mode_bamstat/bamstat_read_bam.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/bamstat_write_output.o -c src/mode_bamstat/bamstat_write_output.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_chunking.o -c src/mode_cis/cis_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_collapse_phenotypes.o -c src/mode_cis/cis_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_conditionnal_pass.o -c src/mode_cis/cis_conditionnal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_cis/cis_conditionnal_pass.cpp:16: src/mode_cis/cis_data.h: In member function ‘double cis_data::getCorrelation(std::vector&, std::vector&)’: src/mode_cis/cis_data.h:149:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_cis/cis_data.h:150:2: note: here 150 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_cis/cis_data.h:150:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 150 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_cis/cis_data.h:151:2: note: here 151 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ -o obj/cis_initilization.o -c src/mode_cis/cis_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_learn_beta.o -c src/mode_cis/cis_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_learn_dof.o -c src/mode_cis/cis_learn_dof.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_main.o -c src/mode_cis/cis_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_management.o -c src/mode_cis/cis_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_nominal_pass.o -c src/mode_cis/cis_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_cis/cis_nominal_pass.cpp:16: src/mode_cis/cis_data.h: In member function ‘double cis_data::getCorrelation(std::vector&, std::vector&)’: src/mode_cis/cis_data.h:149:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_cis/cis_data.h:150:2: note: here 150 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_cis/cis_data.h:150:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 150 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_cis/cis_data.h:151:2: note: here 151 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ -o obj/cis_permutation_pass.o -c src/mode_cis/cis_permutation_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_cis/cis_permutation_pass.cpp:16: src/mode_cis/cis_data.h: In member function ‘double cis_data::getCorrelation(std::vector&, std::vector&)’: src/mode_cis/cis_data.h:149:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_cis/cis_data.h:150:2: note: here 150 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_cis/cis_data.h:150:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 150 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_cis/cis_data.h:151:2: note: here 151 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ -o obj/cis_read_covariates.o -c src/mode_cis/cis_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_read_genotypes.o -c src/mode_cis/cis_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_read_phenotypes.o -c src/mode_cis/cis_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/cis_read_thresholds.o -c src/mode_cis/cis_read_thresholds.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/correct_main.o -c src/mode_correct/correct_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/correct_management.o -c src/mode_correct/correct_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/correct_processing.o -c src/mode_correct/correct_processing.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_correct/correct_processing.cpp: In member function ‘void correct_data::processVCF(std::string, std::string)’: src/mode_correct/correct_processing.cpp:124:15: warning: ignoring return value of ‘int bcf_hdr_write(htsFile*, bcf_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] 124 | bcf_hdr_write(fp, hdr_new); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ mips64el-linux-gnuabi64-g++ -o obj/correct_read_covariates.o -c src/mode_correct/correct_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_correct/correct_read_covariates.cpp: In member function ‘void correct_data::readQTLCovariates(std::string, std::string)’: src/mode_correct/correct_read_covariates.cpp:107:59: warning: unused variable ‘nsl’ [-Wunused-variable] 107 | int ngt, ngt_arr = 0, nds, nds_arr = 0, * gt_arr = NULL, nsl, nsl_arr = 0, * sl_arr = NULL; | ^~~ src/mode_correct/correct_read_covariates.cpp:107:64: warning: unused variable ‘nsl_arr’ [-Wunused-variable] 107 | int ngt, ngt_arr = 0, nds, nds_arr = 0, * gt_arr = NULL, nsl, nsl_arr = 0, * sl_arr = NULL; | ^~~~~~~ src/mode_correct/correct_read_covariates.cpp:107:79: warning: unused variable ‘sl_arr’ [-Wunused-variable] 107 | int ngt, ngt_arr = 0, nds, nds_arr = 0, * gt_arr = NULL, nsl, nsl_arr = 0, * sl_arr = NULL; | ^~~~~~ mips64el-linux-gnuabi64-g++ -o obj/extract_main.o -c src/mode_extract/extract_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/extract_managment.o -c src/mode_extract/extract_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/extract_read_data.o -c src/mode_extract/extract_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_extract/extract_read_data.cpp: In member function ‘void extract_data::readVCF(std::string)’: src/mode_extract/extract_read_data.cpp:101:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 101 | case not_bgzf: vrb.error("File not compressed with bgzip!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_extract/extract_read_data.cpp:102:3: note: here 102 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ^~~~ src/mode_extract/extract_read_data.cpp:102:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 102 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_extract/extract_read_data.cpp:103:3: note: here 103 | case file_type_error: vrb.error("File format not detected by htslib!"); | ^~~~ src/mode_extract/extract_read_data.cpp:103:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 103 | case file_type_error: vrb.error("File format not detected by htslib!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_extract/extract_read_data.cpp:104:3: note: here 104 | default : vrb.error("Unknown error!"); | ^~~~~~~ mips64el-linux-gnuabi64-g++ -o obj/extract_write.o -c src/mode_extract/extract_write.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fdensity_main.o -c src/mode_fdensity/fdensity_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fdensity_process.o -c src/mode_fdensity/fdensity_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fdensity_read_annotation.o -c src/mode_fdensity/fdensity_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fdensity_read_qtl.o -c src/mode_fdensity/fdensity_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fenrich_process.o -c src/mode_fenrich/fenrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/genrich_main.o -c src/mode_genrich/genrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/genrich_process.o -c src/mode_genrich/genrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_genrich/genrich_read_reference_genotypes.cpp: In member function ‘void genrich_data::readReferenceGenotypes(std::string)’: src/mode_genrich/genrich_read_reference_genotypes.cpp:26:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 26 | case not_bgzf: vrb.error("File not compressed with bgzip!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:27:3: note: here 27 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ^~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:27:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 27 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:28:3: note: here 28 | case file_type_error: vrb.error("File format not detected by htslib!"); | ^~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:28:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 28 | case file_type_error: vrb.error("File format not detected by htslib!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_genrich/genrich_read_reference_genotypes.cpp:29:3: note: here 29 | default : vrb.error("Unknown error!"); | ^~~~~~~ mips64el-linux-gnuabi64-g++ -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/gwas_analysis_pass.o -c src/mode_gwas/gwas_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_gwas/gwas_analysis_pass.cpp: In member function ‘void gwas_data::runGwasPassOnVCF(std::string, std::string)’: src/mode_gwas/gwas_analysis_pass.cpp:28:21: warning: ignoring return value of ‘int bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)’, declared with attribute warn_unused_result [-Wunused-result] 28 | bcf_hdr_set_samples(hdr, concat_id.c_str(), 0); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/mode_gwas/gwas_analysis_pass.cpp:16: src/mode_gwas/gwas_data.h: In member function ‘double gwas_data::fastCorrelation(std::vector&, float*)’: src/mode_gwas/gwas_data.h:93:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 93 | case 3: sum0 += P[i+2] * G[i+2]; | ~~~~~^~~~~~~~~~~~~~~~~~ src/mode_gwas/gwas_data.h:94:2: note: here 94 | case 2: sum0 += P[i+1] * G[i+1]; | ^~~~ src/mode_gwas/gwas_data.h:94:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 94 | case 2: sum0 += P[i+1] * G[i+1]; | ~~~~~^~~~~~~~~~~~~~~~~~ src/mode_gwas/gwas_data.h:95:2: note: here 95 | case 1: sum0 += P[i+0] * G[i+0]; | ^~~~ src/mode_gwas/gwas_data.h: In member function ‘double gwas_data::fastCorrelation(std::vector&, std::vector&)’: src/mode_gwas/gwas_data.h:117:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 117 | case 3: sum0 += P[i+2] * G[i+2]; src/mode_gwas/gwas_data.h:118:2: note: here 118 | case 2: sum0 += P[i+1] * G[i+1]; | ^~~~ src/mode_gwas/gwas_data.h:118:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 118 | case 2: sum0 += P[i+1] * G[i+1]; src/mode_gwas/gwas_data.h:119:2: note: here 119 | case 1: sum0 += P[i+0] * G[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ -o obj/gwas_initilization.o -c src/mode_gwas/gwas_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/gwas_main.o -c src/mode_gwas/gwas_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/gwas_managment.o -c src/mode_gwas/gwas_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/gwas_read_covariates.o -c src/mode_gwas/gwas_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/gwas_read_phenotypes.o -c src/mode_gwas/gwas_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/match_main.o -c src/mode_match/match_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/match_process.o -c src/mode_match/match_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_match/match_read_genotypes.cpp: In member function ‘void match_data::readGenotypes(std::string, std::string)’: src/mode_match/match_read_genotypes.cpp:40:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 40 | case not_bgzf: vrb.error("Not compressed with bgzip"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_match/match_read_genotypes.cpp:41:3: note: here 41 | case idx_load_failed: vrb.error("Impossible to load index file"); | ^~~~ src/mode_match/match_read_genotypes.cpp:41:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 41 | case idx_load_failed: vrb.error("Impossible to load index file"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_match/match_read_genotypes.cpp:42:3: note: here 42 | case file_type_error: vrb.error("Unrecognized file format"); | ^~~~ src/mode_match/match_read_genotypes.cpp:42:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 42 | case file_type_error: vrb.error("Unrecognized file format"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_match/match_read_genotypes.cpp:43:3: note: here 43 | default: vrb.error("Unknown error when opening"); | ^~~~~~~ mips64el-linux-gnuabi64-g++ -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_pca/pca_read_data.cpp: In member function ‘void pca_data::readDataVCF(std::string)’: src/mode_pca/pca_read_data.cpp:47:37: warning: this statement may fall through [-Wimplicit-fallthrough=] 47 | case not_bgzf: vrb.error("File not compressed with bgzip!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_pca/pca_read_data.cpp:48:13: note: here 48 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ^~~~ src/mode_pca/pca_read_data.cpp:48:44: warning: this statement may fall through [-Wimplicit-fallthrough=] 48 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_pca/pca_read_data.cpp:49:13: note: here 49 | case file_type_error: vrb.error("File format not detected by htslib!"); | ^~~~ src/mode_pca/pca_read_data.cpp:49:44: warning: this statement may fall through [-Wimplicit-fallthrough=] 49 | case file_type_error: vrb.error("File format not detected by htslib!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_pca/pca_read_data.cpp:50:13: note: here 50 | default : vrb.error("Unknown error!"); | ^~~~~~~ mips64el-linux-gnuabi64-g++ -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/quan_readBAM.o -c src/mode_quan/quan_readBAM.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/quan_readGTF.o -c src/mode_quan/quan_readGTF.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/quan_writeResults.o -c src/mode_quan/quan_writeResults.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/quan_xxhash.o -c src/mode_quan/quan_xxhash.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rep_initilization.o -c src/mode_rep/rep_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_rep/rep_nominal_pass.cpp:16: src/mode_rep/rep_data.h: In member function ‘double rep_data::getCorrelation(std::vector&, std::vector&)’: src/mode_rep/rep_data.h:121:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 121 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rep/rep_data.h:122:2: note: here 122 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_rep/rep_data.h:122:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 122 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rep/rep_data.h:123:2: note: here 123 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_rtc/rtc_common.cpp:16: src/mode_rtc/rtc_data.h: In member function ‘double rtc_data::getCorrelation(std::vector&, std::vector&, int)’: src/mode_rtc/rtc_data.h:300:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 300 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:301:9: note: here 301 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_rtc/rtc_data.h:301:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 301 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:302:9: note: here 302 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ src/mode_rtc/rtc_data.h: In member function ‘double rtc_data::getCorrelation(std::vector&, std::vector&)’: src/mode_rtc/rtc_data.h:276:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 276 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:277:2: note: here 277 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_rtc/rtc_data.h:277:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 277 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:278:2: note: here 278 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_management.o -c src/mode_rtc/rtc_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_rtc/rtc_management.cpp:16: src/mode_rtc/rtc_data.h: In member function ‘double rtc_data::getCorrelation(std::vector&, std::vector&)’: src/mode_rtc/rtc_data.h:276:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 276 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:277:2: note: here 277 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_rtc/rtc_data.h:277:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 277 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:278:2: note: here 278 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_rtc/rtc_read_genotypes.cpp: In member function ‘void rtc_data::readGenotypesVCF(std::string)’: src/mode_rtc/rtc_read_genotypes.cpp:81:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 81 | case not_bgzf: vrb.error("File not compressed with bgzip!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:82:3: note: here 82 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:82:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 82 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:83:3: note: here 83 | case file_type_error: vrb.error("File format not detected by htslib!"); | ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:83:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 83 | case file_type_error: vrb.error("File format not detected by htslib!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:84:3: note: here 84 | default : vrb.error("Unknown error!"); | ^~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp: In member function ‘int rtc_data::readGenotypesVCFStats(std::string, std::string&, std::vector >&)’: src/mode_rtc/rtc_read_genotypes.cpp:263:37: warning: this statement may fall through [-Wimplicit-fallthrough=] 263 | case not_bgzf: vrb.error("File not compressed with bgzip!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:264:13: note: here 264 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:264:44: warning: this statement may fall through [-Wimplicit-fallthrough=] 264 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:265:13: note: here 265 | case file_type_error: vrb.error("File format not detected by htslib!"); | ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:265:44: warning: this statement may fall through [-Wimplicit-fallthrough=] 265 | case file_type_error: vrb.error("File format not detected by htslib!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:266:13: note: here 266 | default : vrb.error("Unknown error!"); | ^~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp: In member function ‘void rtc_data::scanGenotypesVCF(std::string)’: src/mode_rtc/rtc_read_genotypes.cpp:330:37: warning: this statement may fall through [-Wimplicit-fallthrough=] 330 | case not_bgzf: vrb.error("File not compressed with bgzip!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:331:13: note: here 331 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:331:44: warning: this statement may fall through [-Wimplicit-fallthrough=] 331 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:332:13: note: here 332 | case file_type_error: vrb.error("File format not detected by htslib!"); | ^~~~ src/mode_rtc/rtc_read_genotypes.cpp:332:44: warning: this statement may fall through [-Wimplicit-fallthrough=] 332 | case file_type_error: vrb.error("File format not detected by htslib!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp:333:13: note: here 333 | default : vrb.error("Unknown error!"); | ^~~~~~~ mips64el-linux-gnuabi64-g++ -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_rtc/rtc_sampling.cpp:16: src/mode_rtc/rtc_data.h: In member function ‘double rtc_data::getCorrelation(std::vector&, std::vector&, int)’: src/mode_rtc/rtc_data.h:300:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 300 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:301:9: note: here 301 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_rtc/rtc_data.h:301:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 301 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:302:9: note: here 302 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ src/mode_rtc/rtc_data.h: In member function ‘double rtc_data::getCorrelation(std::vector&, std::vector&)’: src/mode_rtc/rtc_data.h:276:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 276 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_rtc/rtc_data.h:277:2: note: here 277 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_rtc/rtc_data.h:277:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 277 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_rtc/rtc_data.h:278:2: note: here 278 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_trans/trans_analysis_pass.cpp:16: src/mode_trans/trans_data.h: In member function ‘double trans_data::fastCorrelation(std::vector&, float*)’: src/mode_trans/trans_data.h:122:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 122 | case 3: sum0 += P[i+2] * G[i+2]; | ~~~~~^~~~~~~~~~~~~~~~~~ src/mode_trans/trans_data.h:123:2: note: here 123 | case 2: sum0 += P[i+1] * G[i+1]; | ^~~~ src/mode_trans/trans_data.h:123:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 123 | case 2: sum0 += P[i+1] * G[i+1]; | ~~~~~^~~~~~~~~~~~~~~~~~ src/mode_trans/trans_data.h:124:2: note: here 124 | case 1: sum0 += P[i+0] * G[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/trans_read_covariates.o -c src/mode_trans/trans_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/trans_read_phenotypes.o -c src/mode_trans/trans_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/trans_read_samples.o -c src/mode_trans/trans_read_samples.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/union_main.o -c src/mode_union/union_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/union_management.o -c src/mode_union/union_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib src/mode_union/union_read_genotypes.cpp: In member function ‘void union_data::readGenotypesVCF(std::string, std::string)’: src/mode_union/union_read_genotypes.cpp:76:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 76 | case not_bgzf: vrb.error("File not compressed with bgzip!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:77:3: note: here 77 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ^~~~ src/mode_union/union_read_genotypes.cpp:77:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 77 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:78:3: note: here 78 | case file_type_error: vrb.error("File format not detected by htslib!"); | ^~~~ src/mode_union/union_read_genotypes.cpp:78:34: warning: this statement may fall through [-Wimplicit-fallthrough=] 78 | case file_type_error: vrb.error("File format not detected by htslib!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:79:3: note: here 79 | default : vrb.error("Unknown error!"); | ^~~~~~~ src/mode_union/union_read_genotypes.cpp: In member function ‘void union_data::scanGenotypesVCF(std::string)’: src/mode_union/union_read_genotypes.cpp:248:37: warning: this statement may fall through [-Wimplicit-fallthrough=] 248 | case not_bgzf: vrb.error("File not compressed with bgzip!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:249:13: note: here 249 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ^~~~ src/mode_union/union_read_genotypes.cpp:249:44: warning: this statement may fall through [-Wimplicit-fallthrough=] 249 | case idx_load_failed: vrb.error("Impossible to load index file!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:250:13: note: here 250 | case file_type_error: vrb.error("File format not detected by htslib!"); | ^~~~ src/mode_union/union_read_genotypes.cpp:250:44: warning: this statement may fall through [-Wimplicit-fallthrough=] 250 | case file_type_error: vrb.error("File format not detected by htslib!"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:251:13: note: here 251 | default : vrb.error("Unknown error!"); | ^~~~~~~ mips64el-linux-gnuabi64-g++ -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib mips64el-linux-gnuabi64-g++ -o obj/union_union.o -c src/mode_union/union_union.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from src/mode_union/union_union.cpp:16: src/mode_union/union_data.h: In member function ‘double union_data::getCorrelation(std::vector&, std::vector&)’: src/mode_union/union_data.h:189:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 189 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/mode_union/union_data.h:190:2: note: here 190 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/mode_union/union_data.h:190:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 190 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/mode_union/union_data.h:191:2: note: here 191 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ mips64el-linux-gnuabi64-g++ obj/QTLtools.o obj/data.o obj/ase_main.o obj/ase_read_genotypes.o obj/ase_read_sequences.o obj/bamstat_main.o obj/bamstat_read_annotations.o obj/bamstat_read_bam.o obj/bamstat_write_output.o obj/cis_chunking.o obj/cis_collapse_phenotypes.o obj/cis_conditionnal_pass.o obj/cis_initilization.o obj/cis_learn_beta.o obj/cis_learn_dof.o obj/cis_main.o obj/cis_management.o obj/cis_nominal_pass.o obj/cis_permutation_pass.o obj/cis_read_covariates.o obj/cis_read_genotypes.o obj/cis_read_phenotypes.o obj/cis_read_thresholds.o obj/correct_main.o obj/correct_management.o obj/correct_processing.o obj/correct_read_covariates.o obj/extract_main.o obj/extract_managment.o obj/extract_read_data.o obj/extract_write.o obj/fdensity_main.o obj/fdensity_process.o obj/fdensity_read_annotation.o obj/fdensity_read_qtl.o obj/fenrich_main.o obj/fenrich_management.o obj/fenrich_process.o obj/fenrich_read_annotation.o obj/fenrich_read_qtl.o obj/fenrich_read_tss.o obj/genrich_binning_process.o obj/genrich_main.o obj/genrich_process.o obj/genrich_read_auxillliary_data.o obj/genrich_read_phenotypes.o obj/genrich_read_reference_genotypes.o obj/genrich_routines.o obj/gwas_analysis_pass.o obj/gwas_initilization.o obj/gwas_main.o obj/gwas_managment.o obj/gwas_read_covariates.o obj/gwas_read_phenotypes.o obj/match_main.o obj/match_managment.o obj/match_process.o obj/match_read_genotypes.o obj/match_read_sequences.o obj/pca_main.o obj/pca_management.o obj/pca_pca.o obj/pca_read_data.o obj/quan_main.o obj/quan_readBAM.o obj/quan_readGTF.o obj/quan_writeResults.o obj/quan_xxhash.o obj/rep_initilization.o obj/rep_main.o obj/rep_management.o obj/rep_nominal_pass.o obj/rep_read_covariates.o obj/rep_read_genotypes.o obj/rep_read_phenotypes.o obj/rep_read_qtls.o obj/rtc_chunking.o obj/rtc_collapse_phenotypes.o obj/rtc_common.o obj/rtc_gwas_cis.o obj/rtc_gwas_trans.o obj/rtc_initilization.o obj/rtc_main.o obj/rtc_management.o obj/rtc_mergeQTL_cis.o obj/rtc_mergeQTL_trans.o obj/rtc_read_covariates.o obj/rtc_read_genotypes.o obj/rtc_read_get_hotspots.o obj/rtc_read_phenotypes.o obj/rtc_sampling.o obj/trans_adjust.o obj/trans_analysis_pass.o obj/trans_chunking.o obj/trans_initilization.o obj/trans_learn_beta.o obj/trans_main.o obj/trans_managment.o obj/trans_read_covariates.o obj/trans_read_phenotypes.o obj/trans_read_samples.o obj/union_initilization.o obj/union_main.o obj/union_management.o obj/union_read_covariates.o obj/union_read_genotypes.o obj/union_read_get_hotspots.o obj/union_read_phenotypes.o obj/union_union.o -lRmath -lhts -lboost_iostreams -lboost_program_options -o bin/QTLtools -lz -lgsl -lblas -lbz2 -lm -lpthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>' cd debian/upstream.example && find -type f | LC_ALL=C sort | tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz ./genes.50percent.chr22.bed.gz ./genes.50percent.chr22.bed.gz.tbi ./genes.covariates.pc50.txt.gz ./genes.simulated.chr22.bed.gz ./genes.simulated.chr22.bed.gz.tbi ./genotypes.chr22.vcf.gz ./genotypes.chr22.vcf.gz.tbi dh_install make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'qtltools' in '../qtltools_1.2+dfsg-2_mips64el.deb'. dpkg-deb: building package 'qtltools-dbgsym' in '../qtltools-dbgsym_1.2+dfsg-2_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../qtltools_1.2+dfsg-2_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-03-18T00:12:49Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ qtltools_1.2+dfsg-2_mips64el.changes: ------------------------------------- Format: 1.8 Date: Wed, 25 Dec 2019 22:27:16 +0100 Source: qtltools Binary: qtltools qtltools-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.2+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: qtltools - Tool set for molecular QTL discovery and analysis Changes: qtltools (1.2+dfsg-2) unstable; urgency=medium . * Team upload. * debian/rules: on mipsel, skip debug info to fit into 4 GB of memory Checksums-Sha1: 233f1a0e27fd982f0907269d6293dc4d4af2fe17 53850444 qtltools-dbgsym_1.2+dfsg-2_mips64el.deb 7d719e48ab1bf1ac7f63427927ac7f17e94b53bd 6335 qtltools_1.2+dfsg-2_mips64el.buildinfo 921d6349c4f2cc459aedc6913161ae939c67a245 571928 qtltools_1.2+dfsg-2_mips64el.deb Checksums-Sha256: 13d11c28b54d2580e292fe2138e9b235591e64bb14b149aeba6ddff1385722de 53850444 qtltools-dbgsym_1.2+dfsg-2_mips64el.deb a80665514d2c78ca09f42bd1737b80c45a70cf8719b7e81c72bcd54286b0be9b 6335 qtltools_1.2+dfsg-2_mips64el.buildinfo ad6a057760bdd7ebb8c4899c9e0c313159e2f200cb9a6a41c091d89127595fb2 571928 qtltools_1.2+dfsg-2_mips64el.deb Files: 4c91712b06e29ce2480ec258cb4a32c6 53850444 debug optional qtltools-dbgsym_1.2+dfsg-2_mips64el.deb 24c3bdf147e979555221252ad2241731 6335 science optional qtltools_1.2+dfsg-2_mips64el.buildinfo 0d95615887f41930618487ae8dc377d3 571928 science optional qtltools_1.2+dfsg-2_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: qtltools Binary: qtltools qtltools-example Architecture: mips64el Version: 1.2+dfsg-2 Checksums-Md5: 4c91712b06e29ce2480ec258cb4a32c6 53850444 qtltools-dbgsym_1.2+dfsg-2_mips64el.deb 0d95615887f41930618487ae8dc377d3 571928 qtltools_1.2+dfsg-2_mips64el.deb Checksums-Sha1: 233f1a0e27fd982f0907269d6293dc4d4af2fe17 53850444 qtltools-dbgsym_1.2+dfsg-2_mips64el.deb 921d6349c4f2cc459aedc6913161ae939c67a245 571928 qtltools_1.2+dfsg-2_mips64el.deb Checksums-Sha256: 13d11c28b54d2580e292fe2138e9b235591e64bb14b149aeba6ddff1385722de 53850444 qtltools-dbgsym_1.2+dfsg-2_mips64el.deb ad6a057760bdd7ebb8c4899c9e0c313159e2f200cb9a6a41c091d89127595fb2 571928 qtltools_1.2+dfsg-2_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 18 Mar 2020 00:12:48 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-4), binutils-common (= 2.34-4), binutils-x86-64-linux-gnu (= 2.34-4), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.4.0-1), cpp-9 (= 9.3.0-3), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.9), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-3), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200312-2), gcc-8 (= 8.4.0-1), gcc-8-base (= 8.4.0-1), gcc-9 (= 9.3.0-3), gcc-9-base (= 9.3.0-3), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.10-1), hostname (= 3.23), icu-devtools (= 63.2-3), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-3), libatomic1 (= 10-20200312-2), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.34-4), libblas-dev (= 3.9.0-1), libblas3 (= 3.9.0-1), libblkid1 (= 2.34-0.1), libboost-iostreams-dev (= 1.67.0.2+b1), libboost-iostreams1.67-dev (= 1.67.0-17), libboost-iostreams1.67.0 (= 1.67.0-17), libboost-program-options-dev (= 1.67.0.2+b1), libboost-program-options1.67-dev (= 1.67.0-17), libboost-program-options1.67.0 (= 1.67.0-17), libboost-regex1.67-dev (= 1.67.0-17), libboost-regex1.67.0 (= 1.67.0-17), libboost1.67-dev (= 1.67.0-17), libbrotli1 (= 1.0.7-6), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libbz2-dev (= 1.0.8-2), libc-bin (= 2.30-2), libc-dev-bin (= 2.30-2), libc6 (= 2.30-2), libc6-dev (= 2.30-2), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10-20200312-2), libcom-err2 (= 1.45.5-2), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.15-1), libcrypt1 (= 1:4.4.15-1), libctf-nobfd0 (= 2.34-4), libctf0 (= 2.34-4), libcurl3-gnutls (= 7.68.0-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 12.9), libdeflate0 (= 1.5-3), libdpkg-perl (= 1.19.7), libeigen3-dev (= 3.3.7-2), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-3), libfile-stripnondeterminism-perl (= 1.6.3-2), libgcc-8-dev (= 8.4.0-1), libgcc-9-dev (= 9.3.0-3), libgcc-s1 (= 10-20200312-2), libgcc1 (= 1:10-20200312-2), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.1-1), libgmp10 (= 2:6.2.0+dfsg-4), libgnutls30 (= 3.6.12-2), libgomp1 (= 10-20200312-2), libgpg-error0 (= 1.37-1), libgsl-dev (= 2.5+dfsg-6+b1), libgsl23 (= 2.5+dfsg-6+b1), libgslcblas0 (= 2.5+dfsg-6+b1), libgssapi-krb5-2 (= 1.17-6), libhogweed5 (= 3.5.1+really3.5.1-2), libhts-dev (= 1.10.2-3), libhts3 (= 1.10.2-3), libicu-dev (= 63.2-3), libicu63 (= 63.2-3), libidn2-0 (= 2.3.0-1), libisl22 (= 0.22.1-1), libitm1 (= 10-20200312-2), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.49+dfsg-2), libldap-common (= 2.4.49+dfsg-2), liblsan0 (= 10-20200312-2), liblz4-1 (= 1.9.2-2), liblzma-dev (= 5.2.4-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.4.0-1), libncursesw6 (= 6.2-1), libnettle7 (= 3.5.1+really3.5.1-2), libnghttp2-14 (= 1.40.0-1), libp11-kit0 (= 0.23.20-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.2-2), libpsl5 (= 0.21.0-1), libquadmath0 (= 10-20200312-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b1), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.4.3-1), libselinux1 (= 3.0-1+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1d-2), libstdc++-9-dev (= 9.3.0-3), libstdc++6 (= 10-20200312-2), libsub-override-perl (= 0.09-2), libsystemd0 (= 245-2), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10-20200312-2), libubsan1 (= 10-20200312-2), libuchardet0 (= 0.0.6-3), libudev1 (= 245-2), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.10+dfsg-4), linux-libc-dev (= 5.4.19-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), pkg-config (= 0.29-6), po-debconf (= 1.0.21), r-mathlib (= 3.6.3-1), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1), tar (= 1.30+dfsg-7), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1577309236" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ qtltools-dbgsym_1.2+dfsg-2_mips64el.deb --------------------------------------- new Debian package, version 2.0. size 53850444 bytes: control archive=540 bytes. 385 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: qtltools-dbgsym Source: qtltools Version: 1.2+dfsg-2 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 53804 Depends: qtltools (= 1.2+dfsg-2) Section: debug Priority: optional Description: debug symbols for qtltools Build-Ids: f72eb0a586c9c5980927b2426585b44c258aa397 drwxr-xr-x root/root 0 2019-12-25 21:27 ./ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/lib/ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/lib/debug/.build-id/f7/ -rw-r--r-- root/root 55084568 2019-12-25 21:27 ./usr/lib/debug/.build-id/f7/2eb0a586c9c5980927b2426585b44c258aa397.debug drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/share/ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-12-25 21:27 ./usr/share/doc/qtltools-dbgsym -> qtltools qtltools_1.2+dfsg-2_mips64el.deb -------------------------------- new Debian package, version 2.0. size 571928 bytes: control archive=952 bytes. 937 bytes, 17 lines control 262 bytes, 4 lines md5sums Package: qtltools Version: 1.2+dfsg-2 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 3481 Depends: libblas3 | libblas.so.3, libboost-iostreams1.67.0, libboost-program-options1.67.0, libc6 (>= 2.29), libgcc-s1 (>= 4.0), libgsl23 (>= 2.5), libhts3 (>= 1.10), libstdc++6 (>= 5.2), r-mathlib Suggests: qtltools-example Section: science Priority: optional Homepage: https://qtltools.github.io/qtltools/ Description: Tool set for molecular QTL discovery and analysis QTLtools is a tool set for molecular Quantitative Trait Loci (QTL) discovery and analysis. It allows user to go from the raw sequence data to collection of molecular QTL in few easy-to-perform steps. QTLtools contains multiple methods to prepare the data, to discover proximal and distal molecular QTL and to finally integrate them with GWAS variants and functional annotations of the genome. drwxr-xr-x root/root 0 2019-12-25 21:27 ./ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/bin/ -rwxr-xr-x root/root 3548976 2019-12-25 21:27 ./usr/bin/QTLtools drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/share/ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/share/doc/qtltools/ -rw-r--r-- root/root 770 2019-12-25 21:27 ./usr/share/doc/qtltools/changelog.Debian.gz -rw-r--r-- root/root 2843 2019-12-25 14:43 ./usr/share/doc/qtltools/copyright drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/share/man/ drwxr-xr-x root/root 0 2019-12-25 21:27 ./usr/share/man/man1/ -rw-r--r-- root/root 1601 2019-12-25 21:27 ./usr/share/man/man1/QTLtools.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [593 B] Get:5 copy:/<>/apt_archive ./ Packages [675 B] Fetched 2231 B in 0s (83.8 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 9523 kB of archives. After this operation, 27.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.19-3 [529 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-4 [661 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.19-3 [889 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 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[95.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.22-1 [369 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.26-1 [27.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.43-1 [83.2 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004000-1 [12.5 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.011+ds-1 [106 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.011+ds-1 [108 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.008001-2 [331 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [35.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.57.0 [1300 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9523 kB in 0s (36.0 MB/s) Selecting previously unselected package readline-common. (Reading database ... 36286 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.19-3_amd64.deb ... Unpacking gpgconf (2.2.19-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libapt-pkg-perl (0.1.36+b3) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.12-1) ... Setting up libclone-perl (0.43-2) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libcpanel-json-xs-perl (4.19-1) ... Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b1) ... Setting up libsqlite3-0:amd64 (3.31.1-4) ... Setting up libfuture-perl (0.43-1) ... Setting up libyaml-libyaml-perl (0.81+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (4) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libsereal-encoder-perl (4.011+ds-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libio-async-perl (0.75-1) ... Setting up patchutils (0.3.4-2+b1) ... Setting up libjson-maybexs-perl (1.004000-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.26-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libipc-run-perl (20180523.0-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3200-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (6.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b3) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-4) ... Setting up libsereal-decoder-perl (4.011+ds-1) ... Setting up liburi-perl (1.76-2) ... Setting up libnet-ssleay-perl (1.88-2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtype-tiny-perl (1.008001-2) ... Setting up libnet-dns-perl (1.22-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-5) ... Setting up gpgconf (2.2.19-3) ... Setting up libio-socket-ssl-perl (2.067-1) ... Setting up gpg (2.2.19-3) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libcgi-pm-perl (4.46-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003006-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.57.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.30-2) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3321664 Build-Time: 3175 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 24 Job: qtltools_1.2+dfsg-2 Lintian: pass Machine Architecture: amd64 Package: qtltools Package-Time: 3211 Source-Version: 1.2+dfsg-2 Space: 3321664 Status: successful Version: 1.2+dfsg-2 -------------------------------------------------------------------------------- Finished at 2020-03-18T00:12:49Z Build needed 00:53:31, 3321664k disk space