sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | qtltools 1.3.1+dfsg-6 (riscv64) Sat, 03 Oct 2026 07:58:06 +0000 | +==============================================================================+ Package: qtltools Version: 1.3.1+dfsg-6 Source Version: 1.3.1+dfsg-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: riscv64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild.SJT9tK7bYA... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 03 Oct 2026 07:58:10 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [12.0 MB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://localhost:3142/debian unstable/main riscv64 Packages [10.4 MB] Fetched 33.3 MB in 3s (12.3 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sat, 03 Oct 2026 07:58:15 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'qtltools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/qtltools.git Please use: git clone https://salsa.debian.org/med-team/qtltools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 13.7 MB of source archives. Get:1 http://localhost:3142/debian unstable/main qtltools 1.3.1+dfsg-6 (dsc) [2215 B] Get:2 http://localhost:3142/debian unstable/main qtltools 1.3.1+dfsg-6 (tar) [141 kB] Get:3 http://localhost:3142/debian unstable/main qtltools 1.3.1+dfsg-6 (diff) [13.6 MB] Fetched 13.7 MB in 0s (189 MB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 03 Oct 2026 07:58:15 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-riscv64:amd64, apt-utils:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 Filtered Build-Depends: debhelper-compat (= 14), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-riscv64:amd64, apt-utils:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-lAMI10/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ Sources [862 B] Get:5 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ Packages [907 B] Fetched 2378 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils comerr-dev:riscv64 cpp-16-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-16-base:riscv64 gcc-16-cross-base gcc-16-riscv64-linux-gnu gcc-16-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:riscv64 libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libblas-dev:riscv64 libblas3:riscv64 libboost-container1.90-dev:riscv64 libboost-container1.90.0:riscv64 libboost-iostreams-dev:riscv64 libboost-iostreams1.90-dev:riscv64 libboost-iostreams1.90.0:riscv64 libboost-program-options-dev:riscv64 libboost-program-options1.90-dev:riscv64 libboost-program-options1.90.0:riscv64 libboost-random1.90-dev:riscv64 libboost-random1.90.0:riscv64 libboost-regex1.90-dev:riscv64 libboost-regex1.90.0:riscv64 libboost1.90-dev:riscv64 libbrotli-dev:riscv64 libbrotli1:riscv64 libbz2-1.0:riscv64 libbz2-dev:riscv64 libc-gconv-modules-extra:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcom-err2:riscv64 libcurl4-gnutls:riscv64 libcurl4-gnutls-dev:riscv64 libdb5.3t64:riscv64 libdebhelper-perl libdeflate-dev:riscv64 libdeflate0:riscv64 libeigen3-dev libelf1t64 libevent-2.1-7t64:riscv64 libffi8:riscv64 libfile-stripnondeterminism-perl libgcc-16-dev:riscv64 libgcc-16-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgmp-dev:riscv64 libgmp10:riscv64 libgmpxx4ldbl:riscv64 libgnutls-dane0t64:riscv64 libgnutls28-dev:riscv64 libgnutls30t64:riscv64 libgomp1:riscv64 libgomp1-riscv64-cross libgsl-dev:riscv64 libgsl28:riscv64 libgslcblas0:riscv64 libgssapi-krb5-2:riscv64 libgssrpc4t64:riscv64 libhogweed6t64:riscv64 libhts-dev:riscv64 libhts3t64:riscv64 libhtscodecs2:riscv64 libidn2-0:riscv64 libidn2-dev:riscv64 libitm1:riscv64 libitm1-riscv64-cross libk5crypto3:riscv64 libkadm5clnt-mit12:riscv64 libkadm5srv-mit12:riscv64 libkdb5-10t64:riscv64 libkeyutils1:riscv64 libkrb5-3:riscv64 libkrb5-dev:riscv64 libkrb5support0:riscv64 libldap-dev:riscv64 libldap2:riscv64 liblsan0:riscv64 liblsan0-riscv64-cross liblzma-dev:riscv64 liblzma5:riscv64 libmagic-mgc libmagic1t64 libnettle8t64:riscv64 libnghttp2-14:riscv64 libnghttp2-dev:riscv64 libnghttp3-9:riscv64 libnghttp3-dev:riscv64 libngtcp2-16:riscv64 libngtcp2-crypto-gnutls-dev:riscv64 libngtcp2-crypto-gnutls8:riscv64 libngtcp2-dev:riscv64 libp11-kit-dev:riscv64 libp11-kit0:riscv64 libpipeline1 libpkgconf7 libpsl-dev:riscv64 libpsl5t64:riscv64 librtmp-dev:riscv64 librtmp1:riscv64 libsasl2-2:riscv64 libsasl2-modules-db:riscv64 libssh2-1-dev:riscv64 libssh2-1t64:riscv64 libssl-dev:riscv64 libssl3t64:riscv64 libstdc++-16-dev:riscv64 libstdc++-16-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtasn1-6:riscv64 libtasn1-6-dev:riscv64 libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunbound8:riscv64 libunistring-dev:riscv64 libunistring5 libunistring5:riscv64 libxml2-16 libzstd-dev:riscv64 libzstd1:riscv64 linux-libc-dev-riscv64-cross m4 man-db nettle-dev:riscv64 pkgconf pkgconf:riscv64 pkgconf-bin po-debconf r-mathlib:riscv64 sensible-utils zlib1g:riscv64 zlib1g-dev:riscv64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:riscv64 gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-riscv64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc:riscv64 liblapack-doc:riscv64 libboost1.90-doc:riscv64 libboost-atomic1.90-dev:riscv64 libboost-chrono1.90-dev:riscv64 libboost-context1.90-dev:riscv64 libboost-contract1.90-dev:riscv64 libboost-coroutine1.90-dev:riscv64 libboost-date-time1.90-dev:riscv64 libboost-exception1.90-dev:riscv64 libboost-fiber1.90-dev:riscv64 libboost-filesystem1.90-dev:riscv64 libboost-graph-parallel1.90-dev:riscv64 libboost-graph1.90-dev:riscv64 libboost-json1.90-dev:riscv64 libboost-locale1.90-dev:riscv64 libboost-log1.90-dev:riscv64 libboost-math1.90-dev:riscv64 libboost-mpi-python1.90-dev:riscv64 libboost-mpi1.90-dev:riscv64 libboost-nowide1.90-dev:riscv64 libboost-numpy1.90-dev:riscv64 libboost-python1.90-dev:riscv64 libboost-serialization1.90-dev:riscv64 libboost-stacktrace1.90-dev:riscv64 libboost-test1.90-dev:riscv64 libboost-thread1.90-dev:riscv64 libboost-timer1.90-dev:riscv64 libboost-type-erasure1.90-dev:riscv64 libboost-url1.90-dev:riscv64 libboost-wave1.90-dev:riscv64 libboost1.90-tools-dev:riscv64 libmpfrc++-dev:riscv64 libntl-dev:riscv64 glibc-doc:riscv64 libc-l10n:riscv64 locales:riscv64 libnss-nis:riscv64 manpages-dev:riscv64 libcurl4-doc:riscv64 libidn-dev:riscv64 libeigen3-doc libmpfrc++-dev gmp-doc:riscv64 libgmp10-doc:riscv64 libmpfr-dev:riscv64 dns-root-data:riscv64 gnutls-bin:riscv64 gnutls-doc:riscv64 gsl-ref-psdoc:riscv64 | gsl-doc-pdf:riscv64 | gsl-doc-info:riscv64 | gsl-ref-html:riscv64 krb5-user:riscv64 liblzma-doc:riscv64 libnghttp2-doc:riscv64 p11-kit-doc:riscv64 libssl-doc:riscv64 libstdc++-16-doc:riscv64 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests bzip2-doc:riscv64 ca-certificates:riscv64 libarchive-cpio-perl krb5-locales:riscv64 libldap-common:riscv64 publicsuffix:riscv64 libsasl2-modules:riscv64 libtasn1-doc:riscv64 libltdl-dev libmail-sendmail-perl r-base-core:riscv64 r-base-dev:riscv64 The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils comerr-dev:riscv64 cpp-16-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-16-base:riscv64 gcc-16-cross-base gcc-16-riscv64-linux-gnu gcc-16-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:riscv64 libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libblas-dev:riscv64 libblas3:riscv64 libboost-container1.90-dev:riscv64 libboost-container1.90.0:riscv64 libboost-iostreams-dev:riscv64 libboost-iostreams1.90-dev:riscv64 libboost-iostreams1.90.0:riscv64 libboost-program-options-dev:riscv64 libboost-program-options1.90-dev:riscv64 libboost-program-options1.90.0:riscv64 libboost-random1.90-dev:riscv64 libboost-random1.90.0:riscv64 libboost-regex1.90-dev:riscv64 libboost-regex1.90.0:riscv64 libboost1.90-dev:riscv64 libbrotli-dev:riscv64 libbrotli1:riscv64 libbz2-1.0:riscv64 libbz2-dev:riscv64 libc-gconv-modules-extra:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcom-err2:riscv64 libcurl4-gnutls:riscv64 libcurl4-gnutls-dev:riscv64 libdb5.3t64:riscv64 libdebhelper-perl libdeflate-dev:riscv64 libdeflate0:riscv64 libeigen3-dev libelf1t64 libevent-2.1-7t64:riscv64 libffi8:riscv64 libfile-stripnondeterminism-perl libgcc-16-dev:riscv64 libgcc-16-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgmp-dev:riscv64 libgmp10:riscv64 libgmpxx4ldbl:riscv64 libgnutls-dane0t64:riscv64 libgnutls28-dev:riscv64 libgnutls30t64:riscv64 libgomp1:riscv64 libgomp1-riscv64-cross libgsl-dev:riscv64 libgsl28:riscv64 libgslcblas0:riscv64 libgssapi-krb5-2:riscv64 libgssrpc4t64:riscv64 libhogweed6t64:riscv64 libhts-dev:riscv64 libhts3t64:riscv64 libhtscodecs2:riscv64 libidn2-0:riscv64 libidn2-dev:riscv64 libitm1:riscv64 libitm1-riscv64-cross libk5crypto3:riscv64 libkadm5clnt-mit12:riscv64 libkadm5srv-mit12:riscv64 libkdb5-10t64:riscv64 libkeyutils1:riscv64 libkrb5-3:riscv64 libkrb5-dev:riscv64 libkrb5support0:riscv64 libldap-dev:riscv64 libldap2:riscv64 liblsan0:riscv64 liblsan0-riscv64-cross liblzma-dev:riscv64 liblzma5:riscv64 libmagic-mgc libmagic1t64 libnettle8t64:riscv64 libnghttp2-14:riscv64 libnghttp2-dev:riscv64 libnghttp3-9:riscv64 libnghttp3-dev:riscv64 libngtcp2-16:riscv64 libngtcp2-crypto-gnutls-dev:riscv64 libngtcp2-crypto-gnutls8:riscv64 libngtcp2-dev:riscv64 libp11-kit-dev:riscv64 libp11-kit0:riscv64 libpipeline1 libpkgconf7 libpsl-dev:riscv64 libpsl5t64:riscv64 librtmp-dev:riscv64 librtmp1:riscv64 libsasl2-2:riscv64 libsasl2-modules-db:riscv64 libssh2-1-dev:riscv64 libssh2-1t64:riscv64 libssl-dev:riscv64 libssl3t64:riscv64 libstdc++-16-dev:riscv64 libstdc++-16-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtasn1-6:riscv64 libtasn1-6-dev:riscv64 libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunbound8:riscv64 libunistring-dev:riscv64 libunistring5 libunistring5:riscv64 libxml2-16 libzstd-dev:riscv64 libzstd1:riscv64 linux-libc-dev-riscv64-cross m4 man-db nettle-dev:riscv64 pkgconf pkgconf:riscv64 pkgconf-bin po-debconf r-mathlib:riscv64 sbuild-build-depends-main-dummy:riscv64 sensible-utils zlib1g:riscv64 zlib1g-dev:riscv64 0 upgraded, 164 newly installed, 0 to remove and 0 not upgraded. Need to get 207 MB of archives. After this operation, 1366 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.24.2-2 [1365 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.19-2 [891 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-riscv64-linux-gnu amd64 2.47-6 [1564 kB] Get:18 http://localhost:3142/debian unstable/main riscv64 gcc-16-base riscv64 16.2.0-3 [38.7 kB] Get:19 http://localhost:3142/debian unstable/main riscv64 libgcc-s1 riscv64 16.2.0-3 [74.2 kB] Get:20 http://localhost:3142/debian unstable/main riscv64 libc-gconv-modules-extra riscv64 2.43-6 [1106 kB] Get:21 http://localhost:3142/debian unstable/main riscv64 libc6 riscv64 2.43-6 [1466 kB] Get:22 http://localhost:3142/debian unstable/main riscv64 libc6-dev riscv64 2.43-6 [3501 kB] Get:23 http://localhost:3142/debian unstable/main riscv64 libcom-err2 riscv64 1.47.4-1+b1 [19.2 kB] Get:24 http://localhost:3142/debian unstable/main riscv64 comerr-dev riscv64 2.1-1.47.4-1+b1 [55.6 kB] Get:25 http://localhost:3142/debian unstable/main amd64 gcc-16-riscv64-linux-gnu-base amd64 16.2.0-3cross1 [38.9 kB] Get:26 http://localhost:3142/debian unstable/main amd64 cpp-16-riscv64-linux-gnu amd64 16.2.0-3cross1 [17.5 MB] Get:27 http://localhost:3142/debian unstable/main amd64 cpp-riscv64-linux-gnu amd64 4:16.1.0-3 [4464 B] Get:28 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libc6-riscv64-cross all 2.43-3cross8 [1229 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libgcc-s1-riscv64-cross all 16.2.0-3cross1 [74.3 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libgomp1-riscv64-cross all 16.2.0-3cross1 [137 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libitm1-riscv64-cross all 16.2.0-3cross1 [25.6 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libatomic1-riscv64-cross all 16.2.0-3cross1 [8604 B] Get:34 http://localhost:3142/debian unstable/main amd64 libasan8-riscv64-cross all 16.2.0-3cross1 [2982 kB] Get:35 http://localhost:3142/debian unstable/main amd64 liblsan0-riscv64-cross all 16.2.0-3cross1 [1341 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libtsan2-riscv64-cross all 16.2.0-3cross1 [2695 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libstdc++6-riscv64-cross all 16.2.0-3cross1 [750 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libubsan1-riscv64-cross all 16.2.0-3cross1 [1190 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-riscv64-cross all 16.2.0-3cross1 [5847 kB] Get:40 http://localhost:3142/debian unstable/main amd64 gcc-16-riscv64-linux-gnu amd64 16.2.0-3cross1 [34.3 MB] Get:41 http://localhost:3142/debian unstable/main amd64 gcc-riscv64-linux-gnu amd64 4:16.1.0-3 [1444 B] Get:42 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-riscv64-cross all 7.2.8-1 [12.0 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libc6-dev-riscv64-cross all 2.43-3cross8 [3495 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-riscv64-cross all 16.2.0-3cross1 [6916 kB] Get:45 http://localhost:3142/debian unstable/main amd64 g++-16-riscv64-linux-gnu amd64 16.2.0-3cross1 [18.6 MB] Get:46 http://localhost:3142/debian unstable/main amd64 g++-riscv64-linux-gnu amd64 4:16.1.0-3 [1200 B] Get:47 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-riscv64 all 12.12 [3544 B] Get:48 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:50 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:53 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:54 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:55 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:58 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:59 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:60 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:61 http://localhost:3142/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:62 http://localhost:3142/debian unstable/main riscv64 libkrb5support0 riscv64 1.22.1-3 [31.8 kB] Get:63 http://localhost:3142/debian unstable/main riscv64 libk5crypto3 riscv64 1.22.1-3 [96.2 kB] Get:64 http://localhost:3142/debian unstable/main riscv64 libkeyutils1 riscv64 1.6.3-6+b2 [9256 B] Get:65 http://localhost:3142/debian unstable/main riscv64 libzstd1 riscv64 1.5.7+dfsg-4 [368 kB] Get:66 http://localhost:3142/debian unstable/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.2-3 [87.3 kB] Get:67 http://localhost:3142/debian unstable/main riscv64 libssl3t64 riscv64 3.6.5-1 [2282 kB] Get:68 http://localhost:3142/debian unstable/main riscv64 libkrb5-3 riscv64 1.22.1-3 [345 kB] Get:69 http://localhost:3142/debian unstable/main riscv64 libgssapi-krb5-2 riscv64 1.22.1-3 [139 kB] Get:70 http://localhost:3142/debian unstable/main riscv64 libgssrpc4t64 riscv64 1.22.1-3 [58.7 kB] Get:71 http://localhost:3142/debian unstable/main riscv64 libkadm5clnt-mit12 riscv64 1.22.1-3 [40.1 kB] Get:72 http://localhost:3142/debian unstable/main riscv64 libkdb5-10t64 riscv64 1.22.1-3 [41.9 kB] Get:73 http://localhost:3142/debian unstable/main riscv64 libkadm5srv-mit12 riscv64 1.22.1-3 [53.8 kB] Get:74 http://localhost:3142/debian unstable/main riscv64 krb5-multidev riscv64 1.22.1-3 [125 kB] Get:75 http://localhost:3142/debian unstable/main riscv64 libasan8 riscv64 16.2.0-3 [2995 kB] Get:76 http://localhost:3142/debian unstable/main riscv64 libatomic1 riscv64 16.2.0-3 [8508 B] Get:77 http://localhost:3142/debian unstable/main riscv64 libblas3 riscv64 3.12.1-8 [120 kB] Get:78 http://localhost:3142/debian unstable/main riscv64 libblas-dev riscv64 3.12.1-8 [290 kB] Get:79 http://localhost:3142/debian unstable/main riscv64 libgomp1 riscv64 16.2.0-3 [137 kB] Get:80 http://localhost:3142/debian unstable/main riscv64 libitm1 riscv64 16.2.0-3 [25.5 kB] Get:81 http://localhost:3142/debian unstable/main riscv64 liblsan0 riscv64 16.2.0-3 [1342 kB] Get:82 http://localhost:3142/debian unstable/main riscv64 libtsan2 riscv64 16.2.0-3 [2706 kB] Get:83 http://localhost:3142/debian unstable/main riscv64 libstdc++6 riscv64 16.2.0-3 [775 kB] Get:84 http://localhost:3142/debian unstable/main riscv64 libubsan1 riscv64 16.2.0-3 [1191 kB] Get:85 http://localhost:3142/debian unstable/main riscv64 libgcc-16-dev riscv64 16.2.0-3 [5847 kB] Get:86 http://localhost:3142/debian unstable/main riscv64 libstdc++-16-dev riscv64 16.2.0-3 [10.6 MB] Get:87 http://localhost:3142/debian unstable/main riscv64 libboost1.90-dev riscv64 1.90.0-6.1+b1 [11.3 MB] Get:88 http://localhost:3142/debian unstable/main riscv64 libboost-container1.90.0 riscv64 1.90.0-6.1+b1 [252 kB] Get:89 http://localhost:3142/debian unstable/main riscv64 libboost-container1.90-dev riscv64 1.90.0-6.1+b1 [329 kB] Get:90 http://localhost:3142/debian unstable/main riscv64 libboost-random1.90.0 riscv64 1.90.0-6.1+b1 [234 kB] Get:91 http://localhost:3142/debian unstable/main riscv64 libboost-random1.90-dev riscv64 1.90.0-6.1+b1 [291 kB] Get:92 http://localhost:3142/debian unstable/main riscv64 libboost-regex1.90.0 riscv64 1.90.0-6.1+b1 [319 kB] Get:93 http://localhost:3142/debian unstable/main riscv64 libboost-regex1.90-dev riscv64 1.90.0-6.1+b1 [769 kB] Get:94 http://localhost:3142/debian unstable/main riscv64 libbz2-1.0 riscv64 1.0.8-6+b2 [39.6 kB] Get:95 http://localhost:3142/debian unstable/main riscv64 liblzma5 riscv64 5.8.4-1 [352 kB] Get:96 http://localhost:3142/debian unstable/main riscv64 libboost-iostreams1.90.0 riscv64 1.90.0-6.1+b1 [246 kB] Get:97 http://localhost:3142/debian unstable/main riscv64 libboost-iostreams1.90-dev riscv64 1.90.0-6.1+b1 [365 kB] Get:98 http://localhost:3142/debian unstable/main riscv64 libboost-iostreams-dev riscv64 1.90.0.2+nmu1 [2976 B] Get:99 http://localhost:3142/debian unstable/main riscv64 libboost-program-options1.90.0 riscv64 1.90.0-6.1+b1 [346 kB] Get:100 http://localhost:3142/debian unstable/main riscv64 libboost-program-options1.90-dev riscv64 1.90.0-6.1+b1 [1390 kB] Get:101 http://localhost:3142/debian unstable/main riscv64 libboost-program-options-dev riscv64 1.90.0.2+nmu1 [3012 B] Get:102 http://localhost:3142/debian unstable/main riscv64 libbrotli1 riscv64 1.2.0-4+b1 [354 kB] Get:103 http://localhost:3142/debian unstable/main riscv64 libbrotli-dev riscv64 1.2.0-4+b1 [937 kB] Get:104 http://localhost:3142/debian unstable/main riscv64 libbz2-dev riscv64 1.0.8-6+b2 [80.0 kB] Get:105 http://localhost:3142/debian unstable/main riscv64 libnghttp3-9 riscv64 1.17.0-1 [67.9 kB] Get:106 http://localhost:3142/debian unstable/main riscv64 libngtcp2-16 riscv64 1.24.0-1 [151 kB] Get:107 http://localhost:3142/debian unstable/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-5+b2 [561 kB] Get:108 http://localhost:3142/debian unstable/main riscv64 libnettle8t64 riscv64 3.10.2-1+b1 [331 kB] Get:109 http://localhost:3142/debian unstable/main riscv64 libhogweed6t64 riscv64 3.10.2-1+b1 [334 kB] Get:110 http://localhost:3142/debian unstable/main riscv64 libunistring5 riscv64 1.4.2-1 [475 kB] Get:111 http://localhost:3142/debian unstable/main riscv64 libidn2-0 riscv64 2.3.8-5 [108 kB] Get:112 http://localhost:3142/debian unstable/main riscv64 libffi8 riscv64 3.8.0-2 [26.7 kB] Get:113 http://localhost:3142/debian unstable/main riscv64 libp11-kit0 riscv64 0.26.5-1 [469 kB] Get:114 http://localhost:3142/debian unstable/main riscv64 libtasn1-6 riscv64 4.21.0-2+b1 [49.7 kB] Get:115 http://localhost:3142/debian unstable/main riscv64 libgnutls30t64 riscv64 3.8.13-1 [1517 kB] Get:116 http://localhost:3142/debian unstable/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-11+b1 [719 kB] Get:117 http://localhost:3142/debian unstable/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-11 [17.5 kB] Get:118 http://localhost:3142/debian unstable/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-11 [57.9 kB] Get:119 http://localhost:3142/debian unstable/main riscv64 libldap2 riscv64 2.6.14+dfsg-2 [189 kB] Get:120 http://localhost:3142/debian unstable/main riscv64 libnghttp2-14 riscv64 1.70.0-1 [93.0 kB] Get:121 http://localhost:3142/debian unstable/main riscv64 libngtcp2-crypto-gnutls8 riscv64 1.24.0-1 [24.1 kB] Get:122 http://localhost:3142/debian unstable/main riscv64 libpsl5t64 riscv64 0.23.3-1 [61.2 kB] Get:123 http://localhost:3142/debian unstable/main riscv64 libssh2-1t64 riscv64 1.11.1-6 [249 kB] Get:124 http://localhost:3142/debian unstable/main riscv64 libcurl4-gnutls riscv64 8.23.0~rc2-1 [437 kB] Get:125 http://localhost:3142/debian unstable/main riscv64 libevent-2.1-7t64 riscv64 2.1.13-stable-1 [183 kB] Get:126 http://localhost:3142/debian unstable/main riscv64 libunbound8 riscv64 1.26.1-1 [638 kB] Get:127 http://localhost:3142/debian unstable/main riscv64 libgnutls-dane0t64 riscv64 3.8.13-1 [494 kB] Get:128 http://localhost:3142/debian unstable/main riscv64 libidn2-dev riscv64 2.3.8-5 [140 kB] Get:129 http://localhost:3142/debian unstable/main riscv64 libp11-kit-dev riscv64 0.26.5-1 [226 kB] Get:130 http://localhost:3142/debian unstable/main riscv64 libtasn1-6-dev riscv64 4.21.0-2+b1 [160 kB] Get:131 http://localhost:3142/debian unstable/main riscv64 libgmpxx4ldbl riscv64 2:6.3.0+dfsg-5+b2 [328 kB] Get:132 http://localhost:3142/debian unstable/main riscv64 libgmp-dev riscv64 2:6.3.0+dfsg-5+b2 [1101 kB] Get:133 http://localhost:3142/debian unstable/main riscv64 nettle-dev riscv64 3.10.2-1+b1 [1556 kB] Get:134 http://localhost:3142/debian unstable/main riscv64 libgnutls28-dev riscv64 3.8.13-1 [2978 kB] Get:135 http://localhost:3142/debian unstable/main riscv64 libkrb5-dev riscv64 1.22.1-3 [14.1 kB] Get:136 http://localhost:3142/debian unstable/main riscv64 libldap-dev riscv64 2.6.14+dfsg-2 [636 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:138 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:139 http://localhost:3142/debian unstable/main riscv64 pkgconf riscv64 2.5.1-4 [33.6 kB] Get:140 http://localhost:3142/debian unstable/main riscv64 libnghttp2-dev riscv64 1.70.0-1 [250 kB] Get:141 http://localhost:3142/debian unstable/main riscv64 libnghttp3-dev riscv64 1.17.0-1 [205 kB] Get:142 http://localhost:3142/debian unstable/main riscv64 libngtcp2-crypto-gnutls-dev riscv64 1.24.0-1 [42.7 kB] Get:143 http://localhost:3142/debian unstable/main riscv64 libngtcp2-dev riscv64 1.24.0-1 [511 kB] Get:144 http://localhost:3142/debian unstable/main riscv64 libunistring-dev riscv64 1.4.2-1 [922 kB] Get:145 http://localhost:3142/debian unstable/main riscv64 libpsl-dev riscv64 0.23.3-1 [30.1 kB] Get:146 http://localhost:3142/debian unstable/main riscv64 librtmp1 riscv64 2.6-1 [59.0 kB] Get:147 http://localhost:3142/debian unstable/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.2-3 [991 kB] Get:148 http://localhost:3142/debian unstable/main riscv64 librtmp-dev riscv64 2.6-1 [132 kB] Get:149 http://localhost:3142/debian unstable/main riscv64 libssl-dev riscv64 3.6.5-1 [6638 kB] Get:150 http://localhost:3142/debian unstable/main riscv64 libssh2-1-dev riscv64 1.11.1-6 [596 kB] Get:151 http://localhost:3142/debian unstable/main riscv64 libzstd-dev riscv64 1.5.7+dfsg-4 [1626 kB] Get:152 http://localhost:3142/debian unstable/main riscv64 libcurl4-gnutls-dev riscv64 8.23.0~rc2-1 [1431 kB] Get:153 http://localhost:3142/debian unstable/main riscv64 libdeflate0 riscv64 1.25-1 [37.0 kB] Get:154 http://localhost:3142/debian unstable/main riscv64 libdeflate-dev riscv64 1.25-1 [88.5 kB] Get:155 http://localhost:3142/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:156 http://localhost:3142/debian unstable/main amd64 libeigen3-dev all 5.0.1-3 [1192 kB] Get:157 http://localhost:3142/debian unstable/main riscv64 libgslcblas0 riscv64 2.8+dfsg-6+b1 [94.4 kB] Get:158 http://localhost:3142/debian unstable/main riscv64 libgsl28 riscv64 2.8+dfsg-6+b1 [1008 kB] Get:159 http://localhost:3142/debian unstable/main riscv64 libgsl-dev riscv64 2.8+dfsg-6+b1 [3454 kB] Get:160 http://localhost:3142/debian unstable/main riscv64 libhtscodecs2 riscv64 1.6.7-1 [73.5 kB] Get:161 http://localhost:3142/debian unstable/main riscv64 libhts3t64 riscv64 1.24-3 [482 kB] Get:162 http://localhost:3142/debian unstable/main riscv64 liblzma-dev riscv64 5.8.4-1 [543 kB] Get:163 http://localhost:3142/debian unstable/main riscv64 libhts-dev riscv64 1.24-3 [3868 kB] Get:164 http://localhost:3142/debian unstable/main riscv64 r-mathlib riscv64 4.6.1-6 [3001 kB] Preconfiguring packages ... Fetched 207 MB in 1s (170 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12033 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_1.0-5_amd64.deb ... Unpacking gettext-base (1.0-5) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../005-libuchardet0_0.0.8-2+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.24.2-2_amd64.deb ... Unpacking groff-base (1.24.2-2) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.42.4-1_amd64.deb ... Unpacking bsdextrautils (2.42.4-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../008-libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.73-2_all.deb ... Unpacking autoconf (2.73-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20240727.1+nmu1_all.deb ... Unpacking autotools-dev (20240727.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.19-2_all.deb ... Unpacking automake (1:1.19-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_1.0-5_all.deb ... Unpacking autopoint (1.0-5) ... Selecting previously unselected package binutils-riscv64-linux-gnu. Preparing to unpack .../015-binutils-riscv64-linux-gnu_2.47-6_amd64.deb ... Unpacking binutils-riscv64-linux-gnu (2.47-6) ... Selecting previously unselected package gcc-16-base:riscv64. Preparing to unpack .../016-gcc-16-base_16.2.0-3_riscv64.deb ... Unpacking gcc-16-base:riscv64 (16.2.0-3) ... Selecting previously unselected package libgcc-s1:riscv64. Preparing to unpack .../017-libgcc-s1_16.2.0-3_riscv64.deb ... Unpacking libgcc-s1:riscv64 (16.2.0-3) ... Selecting previously unselected package libc-gconv-modules-extra:riscv64. Preparing to unpack .../018-libc-gconv-modules-extra_2.43-6_riscv64.deb ... Unpacking libc-gconv-modules-extra:riscv64 (2.43-6) ... Selecting previously unselected package libc6:riscv64. Preparing to unpack .../019-libc6_2.43-6_riscv64.deb ... Unpacking libc6:riscv64 (2.43-6) ... Selecting previously unselected package libc6-dev:riscv64. Preparing to unpack .../020-libc6-dev_2.43-6_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.43-6) ... Selecting previously unselected package libcom-err2:riscv64. Preparing to unpack .../021-libcom-err2_1.47.4-1+b1_riscv64.deb ... Unpacking libcom-err2:riscv64 (1.47.4-1+b1) ... Selecting previously unselected package comerr-dev:riscv64. Preparing to unpack .../022-comerr-dev_2.1-1.47.4-1+b1_riscv64.deb ... Unpacking comerr-dev:riscv64 (2.1-1.47.4-1+b1) ... Selecting previously unselected package gcc-16-riscv64-linux-gnu-base:amd64. 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Unpacking libcurl4-gnutls:riscv64 (8.23.0~rc2-1) ... Selecting previously unselected package libevent-2.1-7t64:riscv64. Preparing to unpack .../123-libevent-2.1-7t64_2.1.13-stable-1_riscv64.deb ... Unpacking libevent-2.1-7t64:riscv64 (2.1.13-stable-1) ... Selecting previously unselected package libunbound8:riscv64. Preparing to unpack .../124-libunbound8_1.26.1-1_riscv64.deb ... Unpacking libunbound8:riscv64 (1.26.1-1) ... Selecting previously unselected package libgnutls-dane0t64:riscv64. Preparing to unpack .../125-libgnutls-dane0t64_3.8.13-1_riscv64.deb ... Unpacking libgnutls-dane0t64:riscv64 (3.8.13-1) ... Selecting previously unselected package libidn2-dev:riscv64. Preparing to unpack .../126-libidn2-dev_2.3.8-5_riscv64.deb ... Unpacking libidn2-dev:riscv64 (2.3.8-5) ... Selecting previously unselected package libp11-kit-dev:riscv64. Preparing to unpack .../127-libp11-kit-dev_0.26.5-1_riscv64.deb ... Unpacking libp11-kit-dev:riscv64 (0.26.5-1) ... 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Selecting previously unselected package libnghttp3-dev:riscv64. Preparing to unpack .../139-libnghttp3-dev_1.17.0-1_riscv64.deb ... Unpacking libnghttp3-dev:riscv64 (1.17.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:riscv64. Preparing to unpack .../140-libngtcp2-crypto-gnutls-dev_1.24.0-1_riscv64.deb ... Unpacking libngtcp2-crypto-gnutls-dev:riscv64 (1.24.0-1) ... Selecting previously unselected package libngtcp2-dev:riscv64. Preparing to unpack .../141-libngtcp2-dev_1.24.0-1_riscv64.deb ... Unpacking libngtcp2-dev:riscv64 (1.24.0-1) ... Selecting previously unselected package libunistring-dev:riscv64. Preparing to unpack .../142-libunistring-dev_1.4.2-1_riscv64.deb ... Unpacking libunistring-dev:riscv64 (1.4.2-1) ... Selecting previously unselected package libpsl-dev:riscv64. Preparing to unpack .../143-libpsl-dev_0.23.3-1_riscv64.deb ... Unpacking libpsl-dev:riscv64 (0.23.3-1) ... Selecting previously unselected package librtmp1:riscv64. 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Selecting previously unselected package libcurl4-gnutls-dev:riscv64. Preparing to unpack .../150-libcurl4-gnutls-dev_8.23.0~rc2-1_riscv64.deb ... Unpacking libcurl4-gnutls-dev:riscv64 (8.23.0~rc2-1) ... Selecting previously unselected package libdeflate0:riscv64. Preparing to unpack .../151-libdeflate0_1.25-1_riscv64.deb ... Unpacking libdeflate0:riscv64 (1.25-1) ... Selecting previously unselected package libdeflate-dev:riscv64. Preparing to unpack .../152-libdeflate-dev_1.25-1_riscv64.deb ... Unpacking libdeflate-dev:riscv64 (1.25-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../153-pkgconf_2.5.1-4_amd64.deb ... Unpacking pkgconf:amd64 (2.5.1-4) ... Selecting previously unselected package libeigen3-dev. Preparing to unpack .../154-libeigen3-dev_5.0.1-3_all.deb ... Unpacking libeigen3-dev (5.0.1-3) ... Selecting previously unselected package libgslcblas0:riscv64. Preparing to unpack .../155-libgslcblas0_2.8+dfsg-6+b1_riscv64.deb ... 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Setting up gettext-base (1.0-5) ... Setting up binutils-riscv64-linux-gnu (2.47-6) ... Setting up m4 (1.4.21-1) ... Setting up gcc-16-base:riscv64 (16.2.0-3) ... Setting up file (1:5.47-4) ... Setting up gcc-16-cross-base (16.2.0-3cross1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up autopoint (1.0-5) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up linux-libc-dev-riscv64-cross (7.2.8-1) ... Setting up libc6-riscv64-cross (2.43-3cross8) ... Setting up libgomp1-riscv64-cross (16.2.0-3cross1) ... Setting up libatomic1-riscv64-cross (16.2.0-3cross1) ... Setting up cpp-16-riscv64-linux-gnu (16.2.0-3cross1) ... Setting up automake (1:1.19-2) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up libitm1-riscv64-cross (16.2.0-3cross1) ... Setting up pkgconf:amd64 (2.5.1-4) ... Setting up pkgconf:riscv64 (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up libgcc-s1-riscv64-cross (16.2.0-3cross1) ... Setting up libeigen3-dev (5.0.1-3) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.2-2) ... Setting up libc6-dev-riscv64-cross (2.43-3cross8) ... Setting up libasan8-riscv64-cross (16.2.0-3cross1) ... Setting up cpp-riscv64-linux-gnu (4:16.1.0-3) ... Setting up libstdc++6-riscv64-cross (16.2.0-3cross1) ... Setting up libubsan1-riscv64-cross (16.2.0-3cross1) ... Setting up po-debconf (1.0.22) ... Setting up liblsan0-riscv64-cross (16.2.0-3cross1) ... Setting up libtsan2-riscv64-cross (16.2.0-3cross1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-16-dev-riscv64-cross (16.2.0-3cross1) ... Setting up debhelper (14.5) ... Setting up libstdc++-16-dev-riscv64-cross (16.2.0-3cross1) ... Setting up gcc-16-riscv64-linux-gnu (16.2.0-3cross1) ... Setting up gcc-riscv64-linux-gnu (4:16.1.0-3) ... Setting up g++-16-riscv64-linux-gnu (16.2.0-3cross1) ... Setting up g++-riscv64-linux-gnu (4:16.1.0-3) ... Setting up crossbuild-essential-riscv64 (12.12) ... Setting up libgcc-s1:riscv64 (16.2.0-3) ... Setting up libc6:riscv64 (2.43-6) ... Setting up libnghttp3-9:riscv64 (1.17.0-1) ... Setting up libnghttp3-dev:riscv64 (1.17.0-1) ... Setting up libdb5.3t64:riscv64 (5.3.28+dfsg2-11+b1) ... Setting up libffi8:riscv64 (3.8.0-2) ... Setting up libasan8:riscv64 (16.2.0-3) ... Setting up libtasn1-6:riscv64 (4.21.0-2+b1) ... Setting up r-mathlib:riscv64 (4.6.1-6) ... Setting up libc6-dev:riscv64 (2.43-6) ... Setting up libngtcp2-16:riscv64 (1.24.0-1) ... Setting up libtsan2:riscv64 (16.2.0-3) ... Setting up libbz2-1.0:riscv64 (1.0.8-6+b2) ... Setting up libtasn1-6-dev:riscv64 (4.21.0-2+b1) ... Setting up libstdc++6:riscv64 (16.2.0-3) ... Setting up liblsan0:riscv64 (16.2.0-3) ... Setting up libitm1:riscv64 (16.2.0-3) ... Setting up libbz2-dev:riscv64 (1.0.8-6+b2) ... Setting up libhtscodecs2:riscv64 (1.6.7-1) ... Setting up libzstd1:riscv64 (1.5.7+dfsg-4) ... Setting up libkeyutils1:riscv64 (1.6.3-6+b2) ... Setting up libzstd-dev:riscv64 (1.5.7+dfsg-4) ... Setting up liblzma5:riscv64 (5.8.4-1) ... Setting up libgslcblas0:riscv64 (2.8+dfsg-6+b1) ... Setting up libbrotli1:riscv64 (1.2.0-4+b1) ... Setting up libnghttp2-14:riscv64 (1.70.0-1) ... Setting up libdeflate0:riscv64 (1.25-1) ... Setting up libevent-2.1-7t64:riscv64 (2.1.13-stable-1) ... Setting up zlib1g:riscv64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libcom-err2:riscv64 (1.47.4-1+b1) ... Setting up libngtcp2-dev:riscv64 (1.24.0-1) ... Setting up libgomp1:riscv64 (16.2.0-3) ... Setting up libkrb5support0:riscv64 (1.22.1-3) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg1-11) ... Setting up libnettle8t64:riscv64 (3.10.2-1+b1) ... Setting up libblas3:riscv64 (3.12.1-8) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libgmp10:riscv64 (2:6.3.0+dfsg-5+b2) ... Setting up libp11-kit0:riscv64 (0.26.5-1) ... Setting up comerr-dev:riscv64 (2.1-1.47.4-1+b1) ... Setting up libunistring5:riscv64 (1.4.2-1) ... Setting up libatomic1:riscv64 (16.2.0-3) ... Setting up libboost-program-options1.90.0:riscv64 (1.90.0-6.1+b1) ... Setting up libk5crypto3:riscv64 (1.22.1-3) ... Setting up liblzma-dev:riscv64 (5.8.4-1) ... Setting up libubsan1:riscv64 (16.2.0-3) ... Setting up zlib1g-dev:riscv64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libhogweed6t64:riscv64 (3.10.2-1+b1) ... Setting up libboost-regex1.90.0:riscv64 (1.90.0-6.1+b1) ... Setting up libboost-random1.90.0:riscv64 (1.90.0-6.1+b1) ... Setting up libgsl28:riscv64 (2.8+dfsg-6+b1) ... Setting up libdeflate-dev:riscv64 (1.25-1) ... Setting up libboost-container1.90.0:riscv64 (1.90.0-6.1+b1) ... Setting up libboost-iostreams1.90.0:riscv64 (1.90.0-6.1+b1) ... Setting up libbrotli-dev:riscv64 (1.2.0-4+b1) ... Setting up libp11-kit-dev:riscv64 (0.26.5-1) ... Setting up libblas-dev:riscv64 (3.12.1-8) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so to provide /usr/lib/riscv64-linux-gnu/libblas.so (libblas.so-riscv64-linux-gnu) in auto mode Setting up libunistring-dev:riscv64 (1.4.2-1) ... Setting up libnghttp2-dev:riscv64 (1.70.0-1) ... Setting up libgsl-dev:riscv64 (2.8+dfsg-6+b1) ... Setting up libgcc-16-dev:riscv64 (16.2.0-3) ... Setting up libssl3t64:riscv64 (3.6.5-1) ... Setting up libidn2-0:riscv64 (2.3.8-5) ... Setting up libunbound8:riscv64 (1.26.1-1) ... Setting up libgmpxx4ldbl:riscv64 (2:6.3.0+dfsg-5+b2) ... Setting up libstdc++-16-dev:riscv64 (16.2.0-3) ... Setting up libssl-dev:riscv64 (3.6.5-1) ... Setting up libidn2-dev:riscv64 (2.3.8-5) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg1-11) ... Setting up libboost1.90-dev:riscv64 (1.90.0-6.1+b1) ... Setting up libkrb5-3:riscv64 (1.22.1-3) ... Setting up libssh2-1t64:riscv64 (1.11.1-6) ... Setting up libboost-random1.90-dev:riscv64 (1.90.0-6.1+b1) ... Setting up libldap2:riscv64 (2.6.14+dfsg-2) ... Setting up libgnutls30t64:riscv64 (3.8.13-1) ... Setting up libgmp-dev:riscv64 (2:6.3.0+dfsg-5+b2) ... Setting up nettle-dev:riscv64 (3.10.2-1+b1) ... Setting up libpsl5t64:riscv64 (0.23.3-1) ... Setting up libpsl-dev:riscv64 (0.23.3-1) ... Setting up libboost-container1.90-dev:riscv64 (1.90.0-6.1+b1) ... Setting up libgnutls-dane0t64:riscv64 (3.8.13-1) ... Setting up librtmp1:riscv64 (2.6-1) ... Setting up libldap-dev:riscv64 (2.6.14+dfsg-2) ... Setting up libgssapi-krb5-2:riscv64 (1.22.1-3) ... Setting up libssh2-1-dev:riscv64 (1.11.1-6) ... Setting up libboost-regex1.90-dev:riscv64 (1.90.0-6.1+b1) ... Setting up libngtcp2-crypto-gnutls8:riscv64 (1.24.0-1) ... Setting up libgnutls28-dev:riscv64 (3.8.13-1) ... Setting up libcurl4-gnutls:riscv64 (8.23.0~rc2-1) ... Setting up libboost-program-options1.90-dev:riscv64 (1.90.0-6.1+b1) ... Setting up libboost-iostreams1.90-dev:riscv64 (1.90.0-6.1+b1) ... Setting up libngtcp2-crypto-gnutls-dev:riscv64 (1.24.0-1) ... Setting up libboost-iostreams-dev:riscv64 (1.90.0.2+nmu1) ... Setting up libboost-program-options-dev:riscv64 (1.90.0.2+nmu1) ... Setting up libgssrpc4t64:riscv64 (1.22.1-3) ... Setting up librtmp-dev:riscv64 (2.6-1) ... Setting up libhts3t64:riscv64 (1.24-3) ... Setting up libkadm5clnt-mit12:riscv64 (1.22.1-3) ... Setting up libkdb5-10t64:riscv64 (1.22.1-3) ... Setting up libkadm5srv-mit12:riscv64 (1.22.1-3) ... Setting up krb5-multidev:riscv64 (1.22.1-3) ... Setting up libkrb5-dev:riscv64 (1.22.1-3) ... Setting up libcurl4-gnutls-dev:riscv64 (8.23.0~rc2-1) ... Setting up libhts-dev:riscv64 (1.24-3) ... Setting up sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Processing triggers for libc-bin (2.43-6) ... +------------------------------------------------------------------------------+ | Check architectures Sat, 03 Oct 2026 07:58:35 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment Sat, 03 Oct 2026 07:58:35 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47-6 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-6 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-riscv64-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-riscv64-cross_16.2.0-3cross1 linux-libc-dev_7.2.8-1 Package versions: apt_3.3.3 apt-utils_3.3.3 autoconf_2.73-2 automake_1:1.19-2 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 binutils_2.47-6 binutils-common_2.47-6 binutils-riscv64-linux-gnu_2.47-6 binutils-x86-64-linux-gnu_2.47-6 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 comerr-dev_2.1-1.47.4-1+b1 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-riscv64-linux-gnu_16.2.0-3cross1 cpp-16-x86-64-linux-gnu_16.2.0-3 cpp-riscv64-linux-gnu_4:16.1.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 crossbuild-essential-riscv64_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.2.0-3 g++-16-riscv64-linux-gnu_16.2.0-3cross1 g++-16-x86-64-linux-gnu_16.2.0-3 g++-riscv64-linux-gnu_4:16.1.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-3 gcc-16-base_16.2.0-3 gcc-16-cross-base_16.2.0-3cross1 gcc-16-riscv64-linux-gnu_16.2.0-3cross1 gcc-16-riscv64-linux-gnu-base_16.2.0-3cross1 gcc-16-x86-64-linux-gnu_16.2.0-3 gcc-riscv64-linux-gnu_4:16.1.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1 groff-base_1.24.2-2 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.22.1-3 libacl1_2.4.0-1 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-3 libasan8-riscv64-cross_16.2.0-3cross1 libatomic1_16.2.0-3 libatomic1-riscv64-cross_16.2.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libbinutils_2.47-6 libblas-dev_3.12.1-8 libblas3_3.12.1-8 libblkid1_2.42.4-1 libboost-container1.90-dev_1.90.0-6.1+b1 libboost-container1.90.0_1.90.0-6.1+b1 libboost-iostreams-dev_1.90.0.2+nmu1 libboost-iostreams1.90-dev_1.90.0-6.1+b1 libboost-iostreams1.90.0_1.90.0-6.1+b1 libboost-program-options-dev_1.90.0.2+nmu1 libboost-program-options1.90-dev_1.90.0-6.1+b1 libboost-program-options1.90.0_1.90.0-6.1+b1 libboost-random1.90-dev_1.90.0-6.1+b1 libboost-random1.90.0_1.90.0-6.1+b1 libboost-regex1.90-dev_1.90.0-6.1+b1 libboost-regex1.90.0_1.90.0-6.1+b1 libboost1.90-dev_1.90.0-6.1+b1 libbrotli-dev_1.2.0-4+b1 libbrotli1_1.2.0-4+b1 libbz2-1.0_1.0.8-6+b2 libbz2-dev_1.0.8-6+b2 libc-bin_2.43-6 libc-dev-bin_2.43-6 libc-gconv-modules-extra_2.43-6 libc6_2.43-6 libc6-dev_2.43-6 libc6-dev-riscv64-cross_2.43-3cross8 libc6-riscv64-cross_2.43-3cross8 libcap-ng0_0.9.6-1 libcc1-0_16.2.0-3 libcom-err2_1.47.4-1+b1 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-6 libctf0_2.47-6 libcurl4-gnutls_8.23.0~rc2-1 libcurl4-gnutls-dev_8.23.0~rc2-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdeflate-dev_1.25-1 libdeflate0_1.25-1 libdpkg-perl_1.23.11 libeigen3-dev_5.0.1-3 libelf1t64_0.196-1 libevent-2.1-7t64_2.1.13-stable-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-3 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po-debconf_1.0.22 r-mathlib_4.6.1-6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sat, 03 Oct 2026 07:58:35 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: qtltools Binary: qtltools, qtltools-example Architecture: any all Version: 1.3.1+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://qtltools.github.io/qtltools/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/qtltools Vcs-Git: https://salsa.debian.org/med-team/qtltools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 14), libblas-dev, libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libeigen3-dev, libgsl-dev, libhts-dev, r-mathlib, zlib1g-dev Package-List: qtltools deb science optional arch=any qtltools-example deb doc optional arch=all Checksums-Sha1: 76f2770a948931a5642542272852cafab3855be1 141108 qtltools_1.3.1+dfsg.orig.tar.xz 49237ae29768526d36c5668c018af5e78e0d7666 13556308 qtltools_1.3.1+dfsg-6.debian.tar.xz Checksums-Sha256: 55a1e683d2d2ae40385e147992209f007e994749bbb8981e4359db862b988d2a 141108 qtltools_1.3.1+dfsg.orig.tar.xz e559ebd0daec90ba83927f710d6977779a339b44862693cbd19ed137c42c03a8 13556308 qtltools_1.3.1+dfsg-6.debian.tar.xz Files: 0e567fb0f71a6486c834b999820bd8cc 141108 qtltools_1.3.1+dfsg.orig.tar.xz a35e74234e3980fad40625a1f7517b51 13556308 qtltools_1.3.1+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmp93ucRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEmyRAAnHxLx36WKR67FS53//TXNKyfkPujRrr2 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/usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting qtltools in /build/reproducible-path/qtltools-1.3.1+dfsg dpkg-source: info: unpacking qtltools_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking qtltools_1.3.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile_config.patch dpkg-source: info: applying libeigen5.0.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.riscv64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.F68MZMwRP9/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ariscv64 -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package qtltools dpkg-buildpackage: info: source version 1.3.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type riscv64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f debian/upstream.example/examples.tar.xz dh_auto_clean make -j1 clean make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' rm -f obj/*.o bin/QTLtools make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/obj/ mkdir -p /build/reproducible-path/qtltools-1.3.1+dfsg/bin/ dh_auto_build make -j1 INSTALL="install --strip-program=true" PKG_CONFIG=riscv64-linux-gnu-pkg-config CXX=riscv64-linux-gnu-g\+\+ CC=riscv64-linux-gnu-gcc make[2]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' riscv64-linux-gnu-g++ -o obj/QTLtools.o -c src/QTLtools.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/QTLtools.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/common/data.h:19, from src/common/data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/ase_management.o -c src/mode_ase/ase_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/ase_read_blacklist.o -c src/mode_ase/ase_read_blacklist.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_blacklist.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/ase_read_fasta.o -c src/mode_ase/ase_read_fasta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_fasta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/ase_read_genotypes.o -c src/mode_ase/ase_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/ase_read_gtf.o -c src/mode_ase/ase_read_gtf.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_gtf.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/ase_read_sequences.o -c src/mode_ase/ase_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/ase_run_analyses.o -c src/mode_ase/ase_run_analyses.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_run_analyses.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/bamstat_main.o -c src/mode_bamstat/bamstat_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/bamstat_read_annotations.o -c src/mode_bamstat/bamstat_read_annotations.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_read_annotations.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/bamstat_read_bam.o -c src/mode_bamstat/bamstat_read_bam.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_read_bam.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_bamstat/bamstat_read_bam.cpp: In member function ‘void bamstat_data::readSequences(std::string)’: src/mode_bamstat/bamstat_read_bam.cpp:122:30: warning: variable ‘n_tmp’ set but not used [-Wunused-but-set-variable=] 122 | unsigned int n_tmp = 0; | ^~~~~ riscv64-linux-gnu-g++ -o obj/bamstat_write_output.o -c src/mode_bamstat/bamstat_write_output.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_bamstat/../common/data.h:19, from src/mode_bamstat/bamstat_data.h:20, from src/mode_bamstat/bamstat_write_output.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_chunking.o -c src/mode_cis/cis_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_collapse_phenotypes.o -c src/mode_cis/cis_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_conditionnal_pass.o -c src/mode_cis/cis_conditionnal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_conditionnal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_initilization.o -c src/mode_cis/cis_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_learn_beta.o -c src/mode_cis/cis_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_learn_dof.o -c src/mode_cis/cis_learn_dof.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_learn_dof.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_main.o -c src/mode_cis/cis_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_main.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_management.o -c src/mode_cis/cis_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_nominal_pass.o -c src/mode_cis/cis_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_permutation_pass.o -c src/mode_cis/cis_permutation_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_permutation_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/cis_read_covariates.o -c src/mode_cis/cis_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_cis/cis_read_covariates.cpp: In member function ‘void cis_data::readCovariates(std::string)’: src/mode_cis/cis_read_covariates.cpp:21:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 21 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/cis_read_genotypes.o -c src/mode_cis/cis_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_cis/cis_read_genotypes.cpp: In member function ‘void cis_data::readGenotypesVCF(std::string)’: src/mode_cis/cis_read_genotypes.cpp:40:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 40 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/cis_read_phenotypes.o -c src/mode_cis/cis_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_cis/cis_read_phenotypes.cpp: In member function ‘void cis_data::readPhenotypes(std::string)’: src/mode_cis/cis_read_phenotypes.cpp:19:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 19 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/cis_read_thresholds.o -c src/mode_cis/cis_read_thresholds.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/mode_cis/cis_read_thresholds.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/correct_main.o -c src/mode_correct/correct_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/correct_management.o -c src/mode_correct/correct_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/correct_processing.o -c src/mode_correct/correct_processing.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_processing.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_correct/correct_processing.cpp: In member function ‘void correct_data::processVCF(std::string, std::string)’: src/mode_correct/correct_processing.cpp:127:22: warning: ignoring return value of ‘int bcf_hdr_write(htsFile*, bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 127 | bcf_hdr_write(fp, hdr_new); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/correct_read_covariates.o -c src/mode_correct/correct_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_correct/../common/data.h:19, from src/mode_correct/correct_data.h:24, from src/mode_correct/correct_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_correct/correct_read_covariates.cpp: In member function ‘void correct_data::readCovariates(std::string)’: src/mode_correct/correct_read_covariates.cpp:21:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 21 | int n_includedS = 0, n_includedC = 0, n_excludedC = 0; | ^~~~~~~~~~~ src/mode_correct/correct_read_covariates.cpp: In member function ‘void correct_data::readQTLCovariates(std::string, std::string)’: src/mode_correct/correct_read_covariates.cpp:91:47: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 91 | int n_includedG = 0, n_excludedG = 0, n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/extract_main.o -c src/mode_extract/extract_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/extract_managment.o -c src/mode_extract/extract_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/extract_read_data.o -c src/mode_extract/extract_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/extract_write.o -c src/mode_extract/extract_write.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_extract/../common/data.h:19, from src/mode_extract/extract_data.h:20, from src/mode_extract/extract_write.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/fdensity_main.o -c src/mode_fdensity/fdensity_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/fdensity_process.o -c src/mode_fdensity/fdensity_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_process.cpp:17: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_fdensity/fdensity_process.cpp: In member function ‘void fdensity_data::buildIntervalTrees()’: src/mode_fdensity/fdensity_process.cpp:50:13: warning: variable ‘n_neg’ set but not used [-Wunused-but-set-variable=] 50 | int n_neg = 0, n_pos = 0, n_mid = 0; | ^~~~~ src/mode_fdensity/fdensity_process.cpp:50:24: warning: variable ‘n_pos’ set but not used [-Wunused-but-set-variable=] 50 | int n_neg = 0, n_pos = 0, n_mid = 0; | ^~~~~ src/mode_fdensity/fdensity_process.cpp:50:35: warning: variable ‘n_mid’ set but not used [-Wunused-but-set-variable=] 50 | int n_neg = 0, n_pos = 0, n_mid = 0; | ^~~~~ src/mode_fdensity/fdensity_process.cpp:51:13: warning: variable ‘s_neg’ set but not used [-Wunused-but-set-variable=] 51 | int s_neg = 0, s_pos = 0, s_mid = 0; | ^~~~~ src/mode_fdensity/fdensity_process.cpp:51:24: warning: variable ‘s_pos’ set but not used [-Wunused-but-set-variable=] 51 | int s_neg = 0, s_pos = 0, s_mid = 0; | ^~~~~ src/mode_fdensity/fdensity_process.cpp:51:35: warning: variable ‘s_mid’ set but not used [-Wunused-but-set-variable=] 51 | int s_neg = 0, s_pos = 0, s_mid = 0; | ^~~~~ riscv64-linux-gnu-g++ -o obj/fdensity_read_annotation.o -c src/mode_fdensity/fdensity_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/fdensity_read_qtl.o -c src/mode_fdensity/fdensity_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fdensity/../common/data.h:19, from src/mode_fdensity/fdensity_data.h:20, from src/mode_fdensity/fdensity_read_qtl.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/fenrich_main.o -c src/mode_fenrich/fenrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/fenrich_management.o -c src/mode_fenrich/fenrich_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/fenrich_process.o -c src/mode_fenrich/fenrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/fenrich_read_annotation.o -c src/mode_fenrich/fenrich_read_annotation.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_annotation.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/fenrich_read_qtl.o -c src/mode_fenrich/fenrich_read_qtl.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_qtl.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/fenrich_read_tss.o -c src/mode_fenrich/fenrich_read_tss.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_fenrich/../common/data.h:19, from src/mode_fenrich/fenrich_data.h:20, from src/mode_fenrich/fenrich_read_tss.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/genrich_binning_process.o -c src/mode_genrich/genrich_binning_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_binning_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/genrich_main.o -c src/mode_genrich/genrich_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/genrich_process.o -c src/mode_genrich/genrich_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/genrich_read_auxillliary_data.o -c src/mode_genrich/genrich_read_auxillliary_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_auxillliary_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/genrich_read_phenotypes.o -c src/mode_genrich/genrich_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/genrich_read_reference_genotypes.o -c src/mode_genrich/genrich_read_reference_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_read_reference_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_genrich/genrich_read_reference_genotypes.cpp: In member function ‘void genrich_data::readReferenceGenotypes(std::string)’: src/mode_genrich/genrich_read_reference_genotypes.cpp:46:44: warning: variable ‘n_excludedV_void’ set but not used [-Wunused-but-set-variable=] 46 | unsigned int n_excludedV_mult = 0, n_excludedV_void = 0, n_excludedV_rare = 0, n_excludedV_uchr = 0, n_line = 0, n_excludedV_toofar = 0; | ^~~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/genrich_routines.o -c src/mode_genrich/genrich_routines.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_genrich/../common/data.h:19, from src/mode_genrich/genrich_data.h:22, from src/mode_genrich/genrich_routines.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/gwas_analysis_pass.o -c src/mode_gwas/gwas_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_gwas/gwas_analysis_pass.cpp: In member function ‘void gwas_data::runGwasPassOnVCF(std::string, std::string)’: src/mode_gwas/gwas_analysis_pass.cpp:28:28: warning: ignoring return value of ‘int bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 28 | bcf_hdr_set_samples(hdr, concat_id.c_str(), 0); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/gwas_initilization.o -c src/mode_gwas/gwas_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/gwas_main.o -c src/mode_gwas/gwas_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/gwas_managment.o -c src/mode_gwas/gwas_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/gwas_read_covariates.o -c src/mode_gwas/gwas_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_gwas/gwas_read_covariates.cpp: In member function ‘void gwas_data::readCovariates(std::string)’: src/mode_gwas/gwas_read_covariates.cpp:21:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 21 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/gwas_read_phenotypes.o -c src/mode_gwas/gwas_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_gwas/../common/data.h:19, from src/mode_gwas/gwas_data.h:20, from src/mode_gwas/gwas_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/match_main.o -c src/mode_match/match_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/match_managment.o -c src/mode_match/match_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/match_process.o -c src/mode_match/match_process.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_process.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/match_read_genotypes.o -c src/mode_match/match_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/match_read_sequences.o -c src/mode_match/match_read_sequences.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_match/../common/data.h:19, from src/mode_match/match_data.h:20, from src/mode_match/match_read_sequences.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/pca_main.o -c src/mode_pca/pca_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/pca_management.o -c src/mode_pca/pca_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/pca_pca.o -c src/mode_pca/pca_pca.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_pca.h:22, from src/mode_pca/pca_pca.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/pca_read_data.o -c src/mode_pca/pca_read_data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_pca/../common/data.h:19, from src/mode_pca/pca_data.h:22, from src/mode_pca/pca_read_data.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_pca/pca_read_data.cpp: In member function ‘void pca_data::readDataVCF(std::string)’: src/mode_pca/pca_read_data.cpp:42:9: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 42 | int n_includedS = 0; | ^~~~~~~~~~~ src/mode_pca/pca_read_data.cpp: In member function ‘void pca_data::readDataPhenoBED(std::string)’: src/mode_pca/pca_read_data.cpp:321:23: warning: variable ‘linecount’ set but not used [-Wunused-but-set-variable=] 321 | unsigned long int linecount = 1; | ^~~~~~~~~ riscv64-linux-gnu-g++ -o obj/quan_main.o -c src/mode_quan/quan_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/quan_readBAM.o -c src/mode_quan/quan_readBAM.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_readBAM.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/quan_readGTF.o -c src/mode_quan/quan_readGTF.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_readGTF.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/quan_writeResults.o -c src/mode_quan/quan_writeResults.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_writeResults.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/quan_xxhash.o -c src/mode_quan/quan_xxhash.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_quan/../common/data.h:19, from src/mode_quan/quan_data.h:21, from src/mode_quan/quan_xxhash.cpp:109: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rep_initilization.o -c src/mode_rep/rep_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_nominal_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_rep/rep_read_covariates.cpp: In member function ‘void rep_data::readCovariates(std::string)’: src/mode_rep/rep_read_covariates.cpp:21:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 21 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_rep/rep_read_genotypes.cpp: In member function ‘void rep_data::readGenotypesVCF(std::string)’: src/mode_rep/rep_read_genotypes.cpp:40:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 40 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_rep/rep_read_phenotypes.cpp: In member function ‘void rep_data::readPhenotypes(std::string)’: src/mode_rep/rep_read_phenotypes.cpp:19:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 19 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rep/../common/data.h:19, from src/mode_rep/rep_data.h:31, from src/mode_rep/rep_read_qtls.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_collapse_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_common.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_gwas_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_gwas_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_initilization.o -c src/mode_rtc/rtc_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_main.o -c src/mode_rtc/rtc_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_management.o -c src/mode_rtc/rtc_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_mergeQTL_cis.o -c src/mode_rtc/rtc_mergeQTL_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_mergeQTL_cis.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_mergeQTL_trans.o -c src/mode_rtc/rtc_mergeQTL_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_mergeQTL_trans.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_read_covariates.o -c src/mode_rtc/rtc_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_rtc/rtc_read_covariates.cpp: In member function ‘void rtc_data::readCovariates(std::string)’: src/mode_rtc/rtc_read_covariates.cpp:21:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 21 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/rtc_read_genotypes.o -c src/mode_rtc/rtc_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_rtc/rtc_read_genotypes.cpp: In member function ‘void rtc_data::readGenotypesVCF(std::string)’: src/mode_rtc/rtc_read_genotypes.cpp:70:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 70 | int n_includedS = 0; | ^~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp: In member function ‘int rtc_data::readGenotypesVCFStats(std::string, std::string&, std::vector >&)’: src/mode_rtc/rtc_read_genotypes.cpp:259:9: warning: variable ‘n_excludedG_mult’ set but not used [-Wunused-but-set-variable=] 259 | int n_excludedG_mult = 0; | ^~~~~~~~~~~~~~~~ src/mode_rtc/rtc_read_genotypes.cpp: In member function ‘void rtc_data::scanGenotypesVCF(std::string)’: src/mode_rtc/rtc_read_genotypes.cpp:329:9: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 329 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/rtc_read_get_hotspots.o -c src/mode_rtc/rtc_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/rtc_read_phenotypes.o -c src/mode_rtc/rtc_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_rtc/rtc_read_phenotypes.cpp: In member function ‘void rtc_data::readPhenotypes(std::string)’: src/mode_rtc/rtc_read_phenotypes.cpp:19:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 19 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/rtc_sampling.o -c src/mode_rtc/rtc_sampling.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_rtc/../common/data.h:19, from src/mode_rtc/rtc_data.h:36, from src/mode_rtc/rtc_sampling.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_rtc/rtc_sampling.cpp: In member function ‘rtc_sample_results rtc_data::sampleRTC(std::vector&, std::vector&, int, double, int)’: src/mode_rtc/rtc_sampling.cpp:45:9: warning: variable ‘better_hit’ set but not used [-Wunused-but-set-variable=] 45 | int better_hit = 0, pseudo_hit = 0; | ^~~~~~~~~~ src/mode_rtc/rtc_sampling.cpp:45:25: warning: variable ‘pseudo_hit’ set but not used [-Wunused-but-set-variable=] 45 | int better_hit = 0, pseudo_hit = 0; | ^~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/trans_adjust.o -c src/mode_trans/trans_adjust.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_adjust.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/trans_analysis_pass.o -c src/mode_trans/trans_analysis_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_analysis_pass.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/trans_chunking.o -c src/mode_trans/trans_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_chunking.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/trans_initilization.o -c src/mode_trans/trans_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/trans_learn_beta.o -c src/mode_trans/trans_learn_beta.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_learn_beta.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/trans_main.o -c src/mode_trans/trans_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/trans_managment.o -c src/mode_trans/trans_managment.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_managment.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/trans_read_covariates.o -c src/mode_trans/trans_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/trans_read_phenotypes.o -c src/mode_trans/trans_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/trans_read_samples.o -c src/mode_trans/trans_read_samples.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_trans/../common/data.h:19, from src/mode_trans/trans_data.h:26, from src/mode_trans/trans_read_samples.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/union_initilization.o -c src/mode_union/union_initilization.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_initilization.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/union_main.o -c src/mode_union/union_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_main.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/union_management.o -c src/mode_union/union_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_management.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/union_read_covariates.o -c src/mode_union/union_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_covariates.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_union/union_read_covariates.cpp: In member function ‘void union_data::readCovariates(std::string)’: src/mode_union/union_read_covariates.cpp:23:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 23 | int n_includedS = 0; | ^~~~~~~~~~~ src/mode_union/union_read_covariates.cpp:25:13: warning: variable ‘n_excludedC’ set but not used [-Wunused-but-set-variable=] 25 | int n_excludedC = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/union_read_genotypes.o -c src/mode_union/union_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_genotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_union/union_read_genotypes.cpp: In member function ‘void union_data::readGenotypesVCF(std::string, std::string)’: src/mode_union/union_read_genotypes.cpp:55:13: warning: variable ‘n_excludedG_mult’ set but not used [-Wunused-but-set-variable=] 55 | int n_excludedG_mult = 0; | ^~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:56:13: warning: variable ‘n_excludedG_void’ set but not used [-Wunused-but-set-variable=] 56 | int n_excludedG_void = 0; | ^~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:57:13: warning: variable ‘n_excludedG_user’ set but not used [-Wunused-but-set-variable=] 57 | int n_excludedG_user = 0; | ^~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:58:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 58 | int n_includedS = 0; | ^~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp: In member function ‘void union_data::readGenotypesBED(std::string, std::string)’: src/mode_union/union_read_genotypes.cpp:151:13: warning: variable ‘n_excludedG_user’ set but not used [-Wunused-but-set-variable=] 151 | int n_excludedG_user = 0; | ^~~~~~~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:152:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 152 | int n_includedS = 0; | ^~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:153:13: warning: variable ‘n_excludedS’ set but not used [-Wunused-but-set-variable=] 153 | int n_excludedS = 0; | ^~~~~~~~~~~ src/mode_union/union_read_genotypes.cpp:154:13: warning: variable ‘n_missingS’ set but not used [-Wunused-but-set-variable=] 154 | int n_missingS = 0; | ^~~~~~~~~~ src/mode_union/union_read_genotypes.cpp: In member function ‘void union_data::scanGenotypesVCF(std::string)’: src/mode_union/union_read_genotypes.cpp:238:9: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 238 | int n_includedS = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/union_read_get_hotspots.o -c src/mode_union/union_read_get_hotspots.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_get_hotspots.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ -o obj/union_read_phenotypes.o -c src/mode_union/union_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_read_phenotypes.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ src/mode_union/union_read_phenotypes.cpp: In member function ‘void union_data::readPhenotypes(std::string, std::string)’: src/mode_union/union_read_phenotypes.cpp:19:13: warning: variable ‘n_includedS’ set but not used [-Wunused-but-set-variable=] 19 | int n_includedS = 0; | ^~~~~~~~~~~ src/mode_union/union_read_phenotypes.cpp:21:13: warning: variable ‘n_excludedP’ set but not used [-Wunused-but-set-variable=] 21 | int n_excludedP = 0; | ^~~~~~~~~~~ riscv64-linux-gnu-g++ -o obj/union_union.o -c src/mode_union/union_union.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from lib/OTools/otools.h:56, from src/mode_union/../common/data.h:19, from src/mode_union/union_data.h:20, from src/mode_union/union_union.cpp:16: lib/OTools/interval_tree.h:76:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 76 | IntervalTree(void) | ^ lib/OTools/interval_tree.h:76:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:82:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 82 | IntervalTree(const intervalTree& other) { | ^ lib/OTools/interval_tree.h:82:22: note: remove the ‘< >’ lib/OTools/interval_tree.h:118:13: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 118 | intervalVector& ivals, | ^~~~~~~~~~~~~~ lib/OTools/interval_tree.h:118:13: note: remove the ‘< >’ riscv64-linux-gnu-g++ obj/QTLtools.o obj/data.o obj/ase_main.o obj/ase_management.o obj/ase_read_blacklist.o obj/ase_read_fasta.o obj/ase_read_genotypes.o obj/ase_read_gtf.o obj/ase_read_sequences.o obj/ase_run_analyses.o obj/bamstat_main.o obj/bamstat_read_annotations.o obj/bamstat_read_bam.o obj/bamstat_write_output.o obj/cis_chunking.o obj/cis_collapse_phenotypes.o obj/cis_conditionnal_pass.o obj/cis_initilization.o obj/cis_learn_beta.o obj/cis_learn_dof.o obj/cis_main.o obj/cis_management.o obj/cis_nominal_pass.o obj/cis_permutation_pass.o obj/cis_read_covariates.o obj/cis_read_genotypes.o obj/cis_read_phenotypes.o obj/cis_read_thresholds.o obj/correct_main.o obj/correct_management.o obj/correct_processing.o obj/correct_read_covariates.o obj/extract_main.o obj/extract_managment.o obj/extract_read_data.o obj/extract_write.o obj/fdensity_main.o obj/fdensity_process.o obj/fdensity_read_annotation.o obj/fdensity_read_qtl.o obj/fenrich_main.o obj/fenrich_management.o obj/fenrich_process.o obj/fenrich_read_annotation.o obj/fenrich_read_qtl.o obj/fenrich_read_tss.o obj/genrich_binning_process.o obj/genrich_main.o obj/genrich_process.o obj/genrich_read_auxillliary_data.o obj/genrich_read_phenotypes.o obj/genrich_read_reference_genotypes.o obj/genrich_routines.o obj/gwas_analysis_pass.o obj/gwas_initilization.o obj/gwas_main.o obj/gwas_managment.o obj/gwas_read_covariates.o obj/gwas_read_phenotypes.o obj/match_main.o obj/match_managment.o obj/match_process.o obj/match_read_genotypes.o obj/match_read_sequences.o obj/pca_main.o obj/pca_management.o obj/pca_pca.o obj/pca_read_data.o obj/quan_main.o obj/quan_readBAM.o obj/quan_readGTF.o obj/quan_writeResults.o obj/quan_xxhash.o obj/rep_initilization.o obj/rep_main.o obj/rep_management.o obj/rep_nominal_pass.o obj/rep_read_covariates.o obj/rep_read_genotypes.o obj/rep_read_phenotypes.o obj/rep_read_qtls.o obj/rtc_chunking.o obj/rtc_collapse_phenotypes.o obj/rtc_common.o obj/rtc_gwas_cis.o obj/rtc_gwas_trans.o obj/rtc_initilization.o obj/rtc_main.o obj/rtc_management.o obj/rtc_mergeQTL_cis.o obj/rtc_mergeQTL_trans.o obj/rtc_read_covariates.o obj/rtc_read_genotypes.o obj/rtc_read_get_hotspots.o obj/rtc_read_phenotypes.o obj/rtc_sampling.o obj/trans_adjust.o obj/trans_analysis_pass.o obj/trans_chunking.o obj/trans_initilization.o obj/trans_learn_beta.o obj/trans_main.o obj/trans_managment.o obj/trans_read_covariates.o obj/trans_read_phenotypes.o obj/trans_read_samples.o obj/union_initilization.o obj/union_main.o obj/union_management.o obj/union_read_covariates.o obj/union_read_genotypes.o obj/union_read_get_hotspots.o obj/union_read_phenotypes.o obj/union_union.o -lRmath -lhts -lboost_iostreams -lboost_program_options -o bin/QTLtools -lz -lgsl -lblas -lbz2 -lm -lpthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/build/reproducible-path/qtltools-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' mkdir -p -m 755 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install --strip-program=true bin/QTLtools /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 755 scripts/qtltools_runFDR_atrans.R scripts/qtltools_plotTrans.R scripts/qtltools_runFDR_ftrans.R scripts/qtltools_runFDR_cis.R /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/bin install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 doc/QTLtools-gwas.1 doc/QTLtools-bamstat.1 doc/QTLtools-pca.1 doc/QTLtools-cis.1 doc/QTLtools-quan.1 doc/QTLtools-fdensity.1 doc/QTLtools-rtc.1 doc/QTLtools-trans.1 doc/QTLtools-mbv.1 doc/QTLtools-rep.1 doc/QTLtools-fenrich.1 doc/QTLtools-extract.1 doc/QTLtools.1 doc/QTLtools-correct.1 doc/QTLtools-rtc-union.1 doc/QTLtools-ase.1 /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/usr/local/share/man/man1 install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 doc/QTLtools_bash_autocomplete.bash /build/reproducible-path/qtltools-1.3.1+dfsg/debian/tmp/etc/bash_completion.d install: WARNING: ignoring --strip-program option as -s option was not specified make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' chmod -R u\+rwX /build/reproducible-path/qtltools-1.3.1\+dfsg/debian/tmp debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/qtltools-1.3.1+dfsg' cd debian/upstream.example && find -type f | LC_ALL=C sort | grep -v examples.tar.xz | \ tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz ./genes.50percent.chr22.bed.gz ./genes.50percent.chr22.bed.gz.tbi ./genes.covariates.pc50.txt.gz ./genes.simulated.chr22.bed.gz ./genes.simulated.chr22.bed.gz.tbi ./genotypes.chr22.vcf.gz ./genotypes.chr22.vcf.gz.tbi dh_install make[1]: Leaving directory '/build/reproducible-path/qtltools-1.3.1+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/qtltools/usr/bin/QTLtools was not linked against libblas.so.3 (it uses none of the library's symbols) dh_fixperms -a dh_strip_nondeterminism -a dh_compress -a dh_installdeb -a dh_computeautosubstvars -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package qtltools: substitution variable ${misc:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'qtltools' in '../qtltools_1.3.1+dfsg-6_riscv64.deb'. dpkg-deb: building package 'qtltools-dbgsym' in '../qtltools-dbgsym_1.3.1+dfsg-6_riscv64.deb'. dpkg-genbuildinfo --build=any -O../qtltools_1.3.1+dfsg-6_riscv64.buildinfo dpkg-genchanges --build=any -O../qtltools_1.3.1+dfsg-6_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-10-03T08:40:11Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Sat, 03 Oct 2026 08:40:11 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/qtltools-1.3.1+dfsg/ ---------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/qtltools-1.3.1+dfsg/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 03 Oct 2026 08:40:11 +0000 | +------------------------------------------------------------------------------+ qtltools_1.3.1+dfsg-6_riscv64.changes: -------------------------------------- Format: 1.8 Date: Thu, 13 Aug 2026 17:02:09 +0200 Source: qtltools Binary: qtltools qtltools-dbgsym Built-For-Profiles: cross nocheck Architecture: riscv64 Version: 1.3.1+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: qtltools - Tool set for molecular QTL discovery and analysis Closes: 1144148 Changes: qtltools (1.3.1+dfsg-6) unstable; urgency=medium . * Team upload. * Explicitly Depends: r-mathlib (which was lost for whatever reason) Closes: #1144148 Checksums-Sha1: 32e87ef475ff602c852930285b87166418125f28 116069540 qtltools-dbgsym_1.3.1+dfsg-6_riscv64.deb 8ed1d11d6c4cbe279fbe5a23230aea30a31b26ee 7492 qtltools_1.3.1+dfsg-6_riscv64.buildinfo 00af381011e0c23fccbe1ee03f01000f57458fb7 983336 qtltools_1.3.1+dfsg-6_riscv64.deb Checksums-Sha256: 1af2b6747f752a72dbc804cdf2945d193161e248a8d1cf983da15f8b0074b74c 116069540 qtltools-dbgsym_1.3.1+dfsg-6_riscv64.deb 23a2e9a915fdcf5144a95d7fba951e3c04ec65d2349ff124039bbfbfa300b61d 7492 qtltools_1.3.1+dfsg-6_riscv64.buildinfo 4a4e38ba05dc3a60e436d5f8310cc3ae5ed4df33ae45d542d2884a5095abee68 983336 qtltools_1.3.1+dfsg-6_riscv64.deb Files: 0248991132ada7d2c09f6934c5caf933 116069540 debug optional qtltools-dbgsym_1.3.1+dfsg-6_riscv64.deb e3d745d2635fddddee85298f8828214d 7492 science optional qtltools_1.3.1+dfsg-6_riscv64.buildinfo 62e72e3e887c9473de1af22959307029 983336 science optional qtltools_1.3.1+dfsg-6_riscv64.deb +------------------------------------------------------------------------------+ | Buildinfo Sat, 03 Oct 2026 08:40:12 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: qtltools Binary: qtltools qtltools-dbgsym Architecture: riscv64 Version: 1.3.1+dfsg-6 Checksums-Md5: 0248991132ada7d2c09f6934c5caf933 116069540 qtltools-dbgsym_1.3.1+dfsg-6_riscv64.deb 62e72e3e887c9473de1af22959307029 983336 qtltools_1.3.1+dfsg-6_riscv64.deb Checksums-Sha1: 32e87ef475ff602c852930285b87166418125f28 116069540 qtltools-dbgsym_1.3.1+dfsg-6_riscv64.deb 00af381011e0c23fccbe1ee03f01000f57458fb7 983336 qtltools_1.3.1+dfsg-6_riscv64.deb Checksums-Sha256: 1af2b6747f752a72dbc804cdf2945d193161e248a8d1cf983da15f8b0074b74c 116069540 qtltools-dbgsym_1.3.1+dfsg-6_riscv64.deb 4a4e38ba05dc3a60e436d5f8310cc3ae5ed4df33ae45d542d2884a5095abee68 983336 qtltools_1.3.1+dfsg-6_riscv64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 03 Oct 2026 08:40:09 +0000 Build-Path: /build/reproducible-path/qtltools-1.3.1+dfsg Installed-Build-Depends: autoconf 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1.90.0-6.1+b1), libboost-regex1.90.0 (= 1.90.0-6.1+b1), libboost1.90-dev (= 1.90.0-6.1+b1), libbrotli-dev (= 1.2.0-4+b1), libbrotli1 (= 1.2.0-4+b1), libbz2-1.0 (= 1.0.8-6+b2), libbz2-dev (= 1.0.8-6+b2), libc-bin (= 2.43-6), libc-dev-bin (= 2.43-6), libc-gconv-modules-extra (= 2.43-6), libc6 (= 2.43-6), libc6-dev (= 2.43-6), libcap-ng0 (= 0.9.6-1), libcc1-0 (= 16.2.0-3), libcom-err2 (= 1.47.4-1+b1), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-6), libctf0 (= 2.47-6), libcurl4-gnutls (= 8.23.0~rc2-1), libcurl4-gnutls-dev (= 8.23.0~rc2-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdpkg-perl (= 1.23.11), libeigen3-dev (= 5.0.1-3), libelf1t64 (= 0.196-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-3), libgprofng0 (= 2.47-6), libgsl-dev (= 2.8+dfsg-6+b1), libgsl28 (= 2.8+dfsg-6+b1), libgslcblas0 (= 2.8+dfsg-6+b1), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libhogweed6t64 (= 3.10.2-1+b1), libhts-dev (= 1.24-3), libhts3t64 (= 1.24-3), libhtscodecs2 (= 1.6.7-1), libhwasan0 (= 16.2.0-3), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjansson4 (= 2.15.1-1), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), libldap-dev (= 2.6.14+dfsg-2), libldap2 (= 2.6.14+dfsg-2), liblsan0 (= 16.2.0-3), liblzma-dev (= 5.8.4-1), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp2-dev (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libnghttp3-dev (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls-dev (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-dev (= 1.24.0-1), libp11-kit-dev (= 0.26.5-1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-3.1), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpkgconf7 (= 2.5.1-4), libpsl-dev (= 0.23.3-1), libpsl5t64 (= 0.23.3-1), libquadmath0 (= 16.2.0-3), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2.1), libsframe3 (= 2.47-6), libsmartcols1 (= 2.42.4-1), libssh2-1-dev (= 1.11.1-6), libssh2-1t64 (= 1.11.1-6), libssl-dev (= 3.6.5-1), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libsystemd0 (= 262-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262-1), libunbound8 (= 1.26.1-1), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.8-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), nettle-dev (= 3.10.2-1+b1), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8-2), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), r-mathlib (= 4.6.1-6), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-6), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1786633329" +------------------------------------------------------------------------------+ | Package contents Sat, 03 Oct 2026 08:40:12 +0000 | +------------------------------------------------------------------------------+ qtltools-dbgsym_1.3.1+dfsg-6_riscv64.deb ---------------------------------------- new Debian package, version 2.0. size 116069540 bytes: control archive=544 bytes. 389 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: qtltools-dbgsym Source: qtltools Version: 1.3.1+dfsg-6 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 117877 Depends: qtltools (= 1.3.1+dfsg-6) Section: debug Priority: optional Description: debug symbols for qtltools Build-Ids: 2f9cce0d8e3f630766f2ceebb927c79b5eea2c1a drwxr-xr-x root/root 0 2026-08-13 15:02 ./ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/lib/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/lib/debug/.build-id/2f/ -rw-r--r-- root/root 120695432 2026-08-13 15:02 ./usr/lib/debug/.build-id/2f/9cce0d8e3f630766f2ceebb927c79b5eea2c1a.debug drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/share/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-08-13 15:02 ./usr/share/doc/qtltools-dbgsym -> qtltools qtltools_1.3.1+dfsg-6_riscv64.deb --------------------------------- new Debian package, version 2.0. size 983336 bytes: control archive=1568 bytes. 1126 bytes, 19 lines control 1723 bytes, 24 lines md5sums Package: qtltools Version: 1.3.1+dfsg-6 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 2488 Depends: libblas3 | libblas.so.3, libboost-iostreams1.90.0 (>= 1.90.0), libboost-program-options1.90.0 (>= 1.90.0), libc6 (>= 2.38), libgcc-s1 (>= 4.3), libgsl28 (>= 2.8+dfsg), libhts3t64 (>= 1.24), libstdc++6 (>= 13.1), r-base-core, r-mathlib Recommends: r-bioc-qvalue Suggests: qtltools-example Section: science Priority: optional Homepage: https://qtltools.github.io/qtltools/ Description: Tool set for molecular QTL discovery and analysis QTLtools is a tool set for molecular Quantitative Trait Loci (QTL) discovery and analysis. It allows user to go from the raw sequence data to collection of molecular QTL in few easy-to-perform steps. QTLtools contains multiple methods to prepare the data, to discover proximal and distal molecular QTL and to finally integrate them with GWAS variants and functional annotations of the genome. Commands: QTLtools, qtltools_plotTrans.R, qtltools_runFDR_atrans.R, qtltools_runFDR_cis.R, qtltools_runFDR_ftrans.R drwxr-xr-x root/root 0 2026-08-13 15:02 ./ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/bin/ -rwxr-xr-x root/root 2468288 2026-08-13 15:02 ./usr/bin/QTLtools -rwxr-xr-x root/root 1698 2026-08-13 15:02 ./usr/bin/qtltools_plotTrans.R -rwxr-xr-x root/root 1043 2026-08-13 15:02 ./usr/bin/qtltools_runFDR_atrans.R -rwxr-xr-x root/root 4439 2026-08-13 15:02 ./usr/bin/qtltools_runFDR_cis.R -rwxr-xr-x root/root 810 2026-08-13 15:02 ./usr/bin/qtltools_runFDR_ftrans.R drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/share/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 948 2026-08-13 15:02 ./usr/share/bash-completion/completions/QTLtools_bash_autocomplete.bash drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/share/doc/qtltools/ -rw-r--r-- root/root 704 2026-08-13 15:02 ./usr/share/doc/qtltools/changelog.Debian.gz -rw-r--r-- root/root 2777 2026-08-13 15:02 ./usr/share/doc/qtltools/copyright drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/share/man/ drwxr-xr-x root/root 0 2026-08-13 15:02 ./usr/share/man/man1/ -rw-r--r-- root/root 5916 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-ase.1.gz -rw-r--r-- root/root 1269 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-bamstat.1.gz -rw-r--r-- root/root 5108 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-cis.1.gz -rw-r--r-- root/root 1393 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-correct.1.gz -rw-r--r-- root/root 1222 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-extract.1.gz -rw-r--r-- root/root 1693 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-fdensity.1.gz -rw-r--r-- root/root 2344 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-fenrich.1.gz -rw-r--r-- root/root 1358 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-gwas.1.gz -rw-r--r-- root/root 1994 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-mbv.1.gz -rw-r--r-- root/root 1624 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-pca.1.gz -rw-r--r-- root/root 3663 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-quan.1.gz -rw-r--r-- root/root 1530 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-rep.1.gz -rw-r--r-- root/root 2572 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-rtc-union.1.gz -rw-r--r-- root/root 4791 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-rtc.1.gz -rw-r--r-- root/root 3864 2026-08-13 15:02 ./usr/share/man/man1/QTLtools-trans.1.gz -rw-r--r-- root/root 5014 2026-08-13 15:02 ./usr/share/man/man1/QTLtools.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-lAMI10/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ Sources [1444 B] Get:5 copy:/build/reproducible-path/resolver-lAMI10/apt_archive ./ Packages [1527 B] Fetched 3586 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: libgssapi-krb5-2 : Depends: libcom-err2 (>= 1.43.9) but it is not going to be installed libkrb5-3 : Depends: libcom-err2 (>= 1.43.9) but it is not going to be installed E: Broken packages apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build Sat, 03 Oct 2026 08:40:19 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 03 Oct 2026 08:40:19 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 03 Oct 2026 08:40:20 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 2495 Distribution: unstable Foreign Architectures: riscv64 Host Architecture: riscv64 Install-Time: 20 Job: qtltools_1.3.1+dfsg-6 Lintian: error Machine Architecture: amd64 Package: qtltools Package-Time: 2525 Source-Version: 1.3.1+dfsg-6 Space: n/a Status: successful Version: 1.3.1+dfsg-6 -------------------------------------------------------------------------------- Finished at 2026-10-03T08:40:11Z Build needed 00:42:05, no disk space