sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | quicktree 2.5-5 (mips64el) Wed, 12 Aug 2020 11:53:22 +0000 | +==============================================================================+ Package: quicktree Version: 2.5-5 Source Version: 2.5-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-30bf3f79-5a8f-4522-b6a7-0608281787be' with '<>' I: NOTICE: Log filtering will replace 'build/quicktree-WrB4AN/resolver-gIeINv' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-08-12-0801.34.pdiff [5731 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-08-12-0801.34.pdiff [5731 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-08-12-0801.34.pdiff [4956 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-08-12-0801.34.pdiff [4956 B] Get:6 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8042 kB] Fetched 8254 kB in 13s (654 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'quicktree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/quicktree.git Please use: git clone https://salsa.debian.org/med-team/quicktree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 46.8 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main quicktree 2.5-5 (dsc) [2048 B] Get:2 http://debian.oregonstate.edu/debian unstable/main quicktree 2.5-5 (tar) [39.8 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main quicktree 2.5-5 (diff) [4984 B] Fetched 46.8 kB in 0s (3922 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/quicktree-WrB4AN/quicktree-2.5' with '<>' I: NOTICE: Log filtering will replace 'build/quicktree-WrB4AN' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, dh-exec, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), help2man, dh-exec, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [418 B] Get:5 copy:/<>/apt_archive ./ Packages [507 B] Fetched 1882 B in 0s (77.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libicu67 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-10-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-9-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-9-multilib-mips64el-linux-gnuabi64 gcc-9-doc gcc-9-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el gnupg git bzr libstdc++-10-doc libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:mips64el libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libicu67 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-10-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:mips64el sensible-utils ucf 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded. Need to get 83.9 MB of archives. After this operation, 362 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-2 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10.2.0-5 [198 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.3.0-17 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-3 [801 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.35-1cross1 [2352 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-3 [2395 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-5 [1736 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-5 [8660 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.1.0-1 [1644 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64-base amd64 9.3.0-8cross1 [196 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mips64el-linux-gnuabi64 amd64 9.3.0-8cross1 [6468 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [16.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.3.0-8cross1 [192 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10-20200324-1cross1 [192 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.31-2cross1 [1336 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mips64el-cross all 10-20200324-1cross1 [69.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 10-20200324-1cross1 [87.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 10-20200324-1cross1 [7388 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mips64el-cross all 9.3.0-8cross1 [248 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64 amd64 9.3.0-8cross1 [6825 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1484 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 10-20200324-1cross1 [393 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.7.10-1cross1 [1237 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.31-2cross1 [2256 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mips64el-cross all 9.3.0-8cross1 [1726 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mips64el-linux-gnuabi64 amd64 9.3.0-8cross1 [7050 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1192 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-3 [8610 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.8 [6704 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2 [187 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.180-1+b1 [165 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.4-1 [1341 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2 [1007 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 dh-exec amd64 0.23.2 [26.6 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.16 [181 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10.2.0-5 [69.8 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.16-1 [95.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.31-3 [2571 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10.2.0-5 [7500 B] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.7.10-1 [1135 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.16-1 [118 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.31-3 [2257 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10.2.0-5 [90.2 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.3.0-17 [248 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10.2.0-5 [433 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.3.0-17 [1736 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.9 MB in 1s (116 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10440 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-2_amd64.deb ... Unpacking bsdextrautils (2.36-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../05-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... 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Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up perl-modules-5.30 (5.30.3-4) ... Setting up bsdextrautils (2.36-2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-3) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libglib2.0-0:amd64 (2.64.4-1) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.38-5) ... Setting up gcc-9-mips64el-linux-gnuabi64-base:amd64 (9.3.0-8cross1) ... Setting up linux-libc-dev:mips64el (5.7.10-1) ... Setting up libc6-mips64el-cross (2.31-2cross1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.35-1cross1) ... Setting up gcc-10-base:mips64el (10.2.0-5) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3.1) ... Setting up gcc-10-cross-base-mipsen (10-20200324-1cross1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-3) ... Setting up linux-libc-dev-mips64el-cross (5.7.10-1cross1) ... Setting up cpp-9-mips64el-linux-gnuabi64 (9.3.0-8cross1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libgomp1-mips64el-cross (10-20200324-1cross1) ... Setting up libgcc-s1-mips64el-cross (10-20200324-1cross1) ... Setting up libelf1:amd64 (0.180-1+b1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:mips64el (9.3.0-17) ... Setting up libatomic1-mips64el-cross (10-20200324-1cross1) ... Setting up libstdc++-10-dev:amd64 (10.2.0-5) ... Setting up g++-10 (10.2.0-5) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up perl (5.30.3-4) ... Setting up libc6-dev-mips64el-cross (2.31-2cross1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up libstdc++6-mips64el-cross (10-20200324-1cross1) ... Setting up g++ (4:10.1.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libgcc-9-dev-mips64el-cross (9.3.0-8cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libstdc++-9-dev-mips64el-cross (9.3.0-8cross1) ... Setting up libdebhelper-perl (13.2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up gcc-9-mips64el-linux-gnuabi64 (9.3.0-8cross1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.47.16) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up g++-9-mips64el-linux-gnuabi64 (9.3.0-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-mips64el (12.8) ... Setting up libcrypt1:mips64el (1:4.4.16-1) ... Setting up libgcc-s1:mips64el (10.2.0-5) ... Setting up dh-autoreconf (19) ... Setting up libc6:mips64el (2.31-3) ... Setting up libcrypt-dev:mips64el (1:4.4.16-1) ... Setting up libc6-dev:mips64el (2.31-3) ... Setting up libstdc++6:mips64el (10.2.0-5) ... Setting up debhelper (13.2) ... Setting up dh-exec (0.23.2) ... Setting up libgomp1:mips64el (10.2.0-5) ... Setting up libatomic1:mips64el (10.2.0-5) ... Setting up libgcc-9-dev:mips64el (9.3.0-17) ... Setting up libstdc++-9-dev:mips64el (9.3.0-17) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) amd64 (x86_64) Toolchain package versions: binutils_2.35-1 dpkg-dev_1.20.5 g++-10_10.2.0-5 gcc-10_10.2.0-5 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-5 libstdc++-9-dev_9.3.0-17 libstdc++-9-dev-mips64el-cross_9.3.0-8cross1 libstdc++6_10.2.0-5 libstdc++6-mips64el-cross_10-20200324-1cross1 linux-libc-dev_5.7.10-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-1 binutils-common_2.35-1 binutils-mips64el-linux-gnuabi64_2.35-1cross1 binutils-x86-64-linux-gnu_2.35-1 bsdextrautils_2.36-2 bsdutils_1:2.36-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-3 cpp_4:10.1.0-1 cpp-10_10.2.0-5 cpp-8_8.4.0-4 cpp-9-mips64el-linux-gnuabi64_9.3.0-8cross1 cpp-mips64el-linux-gnuabi64_4:9.2.1-4.1 cross-config_2.6.15-3.1 crossbuild-essential-mips64el_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1 g++-10_10.2.0-5 g++-9-mips64el-linux-gnuabi64_9.3.0-8cross1 g++-mips64el-linux-gnuabi64_4:9.2.1-4.1 gcc_4:10.1.0-1 gcc-10_10.2.0-5 gcc-10-base_10.2.0-5 gcc-10-cross-base-mipsen_10-20200324-1cross1 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-17 gcc-9-cross-base-mipsen_9.3.0-8cross1 gcc-9-mips64el-linux-gnuabi64_9.3.0-8cross1 gcc-9-mips64el-linux-gnuabi64-base_9.3.0-8cross1 gcc-mips64el-linux-gnuabi64_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan5_9.3.0-17 libasan6_10.2.0-5 libatomic1_10.2.0-5 libatomic1-mips64el-cross_10-20200324-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.35-1 libblkid1_2.36-2 libbz2-1.0_1.0.8-4 libc-bin_2.31-3 libc-dev-bin_2.31-3 libc6_2.31-3 libc6-dev_2.31-3 libc6-dev-mips64el-cross_2.31-2cross1 libc6-mips64el-cross_2.31-2cross1 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-5 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.35-1 libctf0_2.35-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf1_0.180-1+b1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-2 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-5 libgcc-9-dev_9.3.0-17 libgcc-9-dev-mips64el-cross_9.3.0-8cross1 libgcc-s1_10.2.0-5 libgcc-s1-mips64el-cross_10-20200324-1cross1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-5 libgomp1-mips64el-cross_10-20200324-1cross1 libgpg-error0_1.38-2 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-5 liblocale-gettext-perl_1.07-4 liblsan0_10.2.0-5 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-2 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libquadmath0_10.2.0-5 libseccomp2_2.4.3-1+b1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.36-2 libss2_1.45.6-1 libstdc++-10-dev_10.2.0-5 libstdc++-9-dev_9.3.0-17 libstdc++-9-dev-mips64el-cross_9.3.0-8cross1 libstdc++6_10.2.0-5 libstdc++6-mips64el-cross_10-20200324-1cross1 libsub-override-perl_0.09-2 libsystemd0_246-2 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.2.0-5 libubsan1_10.2.0-5 libuchardet0_0.0.7-1 libudev1_246-2 libunistring2_0.9.10-4 libuuid1_2.36-2 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5+b1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.7.10-1 linux-libc-dev-mips64el-cross_5.7.10-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-2 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: quicktree Binary: quicktree, libquicktree-dev Architecture: any Version: 2.5-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/khowe/quicktree/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/quicktree Vcs-Git: https://salsa.debian.org/med-team/quicktree.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, dh-exec Package-List: libquicktree-dev deb libdevel optional arch=any quicktree deb science optional arch=any Checksums-Sha1: 7694e325400b1775b3682b14ada2a8ba301fbd94 39784 quicktree_2.5.orig.tar.gz 81db3b330faed1e46c1a2a8f6ff2b3495dccbce8 4984 quicktree_2.5-5.debian.tar.xz Checksums-Sha256: 731aa845ce3f1f0645bd0df2b54df75f78fce065d6a3ddc47fedf4bdcb11c248 39784 quicktree_2.5.orig.tar.gz 02a06b5185fdfcd3c0acb8ae818489796233ae6aaef39de0980f5d47233683b4 4984 quicktree_2.5-5.debian.tar.xz Files: e7fcd348f16de227383461373565b8de 39784 quicktree_2.5.orig.tar.gz 75cf2eaebab7dc35fdc91eb7edb56868 4984 quicktree_2.5-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl8tV0wUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFn3BAAgep7LPwPmryv+ceHOMQP4Am6WNjS QkioIMG4WsnBT0BjQROVSJYJzlRPCEZDJ+A5ynaF4xFlsRkwux/d+l8DFMRtYZ+L XGP4igb14qmIRwkedx7gqgV2zg1A7NAukMArcCOzbE+3Pp9RlcfA3jLygly79PHe pZwp0wtVxVyIFdiWVFqxiCPqCRtCMC0Y1FVvKYJhggkXSkrvellYu5VM5hzp4nQ5 BLEb983VIEg83v9/ChDtp+/ZLGSD+n0XZ1p0iyLTRK2aqEj9r9m5tWDEUDS/BPl9 J8q8tcttaVwufE5P1Hp0EC/N/Y12k5H7zxTLsaSvnYpWltkIB15djueOd+/sLyDb d3TL+NWknBhJYyYE6KrPViNW4nwdwi1bfv4mAw0i2OOmhyNgbb9EsdQSWw7mg3pz yONCpGO1yPxGOlkPLRn/ADNq4t+8/+B/hOHX1osnswQF3LK/jUA/QGThzJAJmc2i oqj0vZFZYB3HkNnUYZ49l6hbu9Yyk9i2CeS/OZpTedZW8A+ngwnFOQYy9XAR51VB C1+BZu1n0lrPv6qEK6zn2mh2cc1jmGPRSW8qrwrvfBwZG2k4O7zMB5RHdnFnjOCU kUx3FPkuY5y6ZHgXol4FkKknPqb9+/0RZB6BTadkTY6mlWRGK7zIs0cRC6zi3NRu 0w8XdUPsUh/iA6c= =co68 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.SRDCGdRi/trustedkeys.kbx': General error gpgv: Signature made Fri Aug 7 13:29:48 2020 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./quicktree_2.5-5.dsc dpkg-source: info: extracting quicktree in /<> dpkg-source: info: unpacking quicktree_2.5.orig.tar.gz dpkg-source: info: unpacking quicktree_2.5-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixMake.patch dpkg-source: info: applying create_lib.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-30bf3f79-5a8f-4522-b6a7-0608281787be SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package quicktree dpkg-buildpackage: info: source version 2.5-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/debian/.debhelper/generated/_source/home make -j1 clean make[2]: Entering directory '/<>' rm -f ./*.o quicktree make[2]: Leaving directory '/<>' rm -f quicktree.1 make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/quicktree.substvars debian/libquicktree-dev.substvars debian/files rm -fr -- debian/quicktree/ debian/tmp/ debian/libquicktree-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a install -d /<>/debian/.debhelper/generated/_source/home debian/rules override_dh_auto_build make[1]: Entering directory '/<>' sed -i 's/expexted/expected/' src/tree.c sed -i 's/optio\\n/option/' src/quicktree.c dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mips64el-linux-gnuabi64-pkg-config CXX=mips64el-linux-gnuabi64-g\+\+ CC=mips64el-linux-gnuabi64-gcc make[2]: Entering directory '/<>' mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wunused-result -c -I./include -o ./align.o ./src/align.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wunused-result -c -I./include -o ./cluster.o ./src/cluster.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wunused-result -c -I./include -o ./distancemat.o ./src/distancemat.c ./src/distancemat.c: In function ‘read_phylip_DistanceMatrix’: ./src/distancemat.c:389:27: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=] 389 | if (! fscanf( handle, "%d", &size )) | ~^ ~~~~~ | | | | | unsigned int * | int * | %d ./src/distancemat.c:410:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 410 | while(c = fgetc(handle)) { | ^ mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wunused-result -c -I./include -o ./options.o ./src/options.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wunused-result -c -I./include -o ./util.o ./src/util.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wunused-result -c -I./include -o ./sequence.o ./src/sequence.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wunused-result -c -I./include -o ./quicktree.o ./src/quicktree.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wunused-result -c -I./include -o ./buildtree.o ./src/buildtree.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wunused-result -c -I./include -o ./tree.o ./src/tree.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -o quicktree ./align.o ./cluster.o ./distancemat.o ./options.o ./util.o ./sequence.o ./quicktree.o ./buildtree.o ./tree.o -lm ar rc libquicktree.a ./buildtree.o ./cluster.o ./distancemat.o ./options.o ./util.o ./sequence.o ./tree.o make[2]: Leaving directory '/<>' help2man -i debian/quicktree.htm --no-discard-stderr ./quicktree > quicktree.1 Wide character in print at /usr/bin/help2man line 694. make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a rm -f -- debian/quicktree.substvars debian/libquicktree-dev.substvars rm -fr -- debian/.debhelper/generated/quicktree/ debian/quicktree/ debian/tmp/ debian/.debhelper/generated/libquicktree-dev/ debian/libquicktree-dev/ dh_auto_install -a install -d /<>/debian/tmp dh_install -a install -d debian/quicktree/usr/bin cp --reflink=auto -a ./quicktree debian/quicktree/usr/bin/ install -d debian/.debhelper/generated/quicktree install -d debian/libquicktree-dev/usr/include/quicktree cp --reflink=auto -a ./include/align.h ./include/aln2dist.h ./include/aln2tree.h ./include/buildtree.h ./include/cluster.h ./include/dist2tree.h ./include/distancemat.h ./include/options.h ./include/sequence.h ./include/tree.h ./include/util.h ./include/version.h debian/libquicktree-dev/usr/include/quicktree/ install -d debian/libquicktree-dev/usr/lib/mips64el-linux-gnuabi64 cp --reflink=auto -a ./libquicktree.a debian/libquicktree-dev/usr/lib/mips64el-linux-gnuabi64/ install -d debian/.debhelper/generated/libquicktree-dev dh_installdocs -a install -d debian/quicktree/usr/share/doc/quicktree install -p -m0644 debian/copyright debian/quicktree/usr/share/doc/quicktree/copyright install -d debian/libquicktree-dev/usr/share/doc/libquicktree-dev install -p -m0644 debian/copyright debian/libquicktree-dev/usr/share/doc/libquicktree-dev/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/quicktree/usr/share/doc/quicktree/changelog.Debian install -p -m0644 debian/changelog debian/libquicktree-dev/usr/share/doc/libquicktree-dev/changelog.Debian dh_installexamples -a install -d debian/quicktree/usr/share/doc/quicktree/examples cp --reflink=auto -a ./debian/tests/data/cysprot.stockholm debian/quicktree/usr/share/doc/quicktree/examples dh_installman -a install -d debian/quicktree/usr/share/man/man1/ install -p -m0644 ./quicktree.1 debian/quicktree/usr/share/man/man1/quicktree.1 man-recode --to-code UTF-8 --suffix .dh-new debian/quicktree/usr/share/man/man1/quicktree.1 mv debian/quicktree/usr/share/man/man1/quicktree.1.dh-new debian/quicktree/usr/share/man/man1/quicktree.1 chmod 0644 -- debian/quicktree/usr/share/man/man1/quicktree.1 dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/quicktree chmod a-x usr/share/doc/quicktree/changelog.Debian usr/share/man/man1/quicktree.1 gzip -9nf usr/share/doc/quicktree/changelog.Debian usr/share/man/man1/quicktree.1 cd '/<>' cd debian/libquicktree-dev chmod a-x usr/share/doc/libquicktree-dev/changelog.Debian gzip -9nf usr/share/doc/libquicktree-dev/changelog.Debian cd '/<>' dh_fixperms -a find debian/quicktree ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/quicktree/usr/share/doc -type f -a -true -a ! -regex 'debian/quicktree/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/quicktree/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/quicktree/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/quicktree -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/quicktree/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libquicktree-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libquicktree-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libquicktree-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libquicktree-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libquicktree-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libquicktree-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libquicktree-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a dh_dwz -a -a dwz -- debian/quicktree/usr/bin/quicktree dh_strip -a -a install -d debian/.debhelper/quicktree/dbgsym-root/usr/lib/debug/.build-id/a7 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/quicktree/usr/bin/quicktree debian/.debhelper/quicktree/dbgsym-root/usr/lib/debug/.build-id/a7/2f90ffa713ad7540ff5062345211df59e3e77e.debug chmod 0644 -- debian/.debhelper/quicktree/dbgsym-root/usr/lib/debug/.build-id/a7/2f90ffa713ad7540ff5062345211df59e3e77e.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/quicktree/usr/bin/quicktree mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/quicktree/dbgsym-root/usr/lib/debug/.build-id/a7/2f90ffa713ad7540ff5062345211df59e3e77e.debug debian/quicktree/usr/bin/quicktree install -d debian/.debhelper/quicktree/dbgsym-root/usr/share/doc ln -s quicktree debian/.debhelper/quicktree/dbgsym-root/usr/share/doc/quicktree-dbgsym mips64el-linux-gnuabi64-strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libquicktree-dev/usr/lib/mips64el-linux-gnuabi64/libquicktree.a dh_makeshlibs -a -a rm -f debian/quicktree/DEBIAN/shlibs rm -f debian/libquicktree-dev/DEBIAN/shlibs dh_shlibdeps -a -a install -d debian/quicktree/DEBIAN dpkg-shlibdeps -Tdebian/quicktree.substvars debian/quicktree/usr/bin/quicktree dh_installdeb -a install -d debian/libquicktree-dev/DEBIAN dh_gencontrol -a echo misc:Depends= >> debian/quicktree.substvars echo misc:Pre-Depends= >> debian/quicktree.substvars install -d debian/.debhelper/quicktree/dbgsym-root/DEBIAN dpkg-gencontrol -pquicktree -ldebian/changelog -Tdebian/quicktree.substvars -Pdebian/.debhelper/quicktree/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=quicktree-dbgsym "-DDepends=quicktree (= \${binary:Version})" "-DDescription=debug symbols for quicktree" -DBuild-Ids=a72f90ffa713ad7540ff5062345211df59e3e77e -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/quicktree/dbgsym-root/DEBIAN/control dpkg-gencontrol -pquicktree -ldebian/changelog -Tdebian/quicktree.substvars -Pdebian/quicktree chmod 0644 -- debian/quicktree/DEBIAN/control echo misc:Depends= >> debian/libquicktree-dev.substvars echo misc:Pre-Depends= >> debian/libquicktree-dev.substvars dpkg-gencontrol -plibquicktree-dev -ldebian/changelog -Tdebian/libquicktree-dev.substvars -Pdebian/libquicktree-dev dpkg-gencontrol: warning: Depends field of package libquicktree-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libquicktree-dev/DEBIAN/control dh_md5sums -a cd debian/quicktree >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/quicktree/DEBIAN/md5sums cd debian/.debhelper/quicktree/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/quicktree/dbgsym-root/DEBIAN/md5sums cd debian/libquicktree-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libquicktree-dev/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/quicktree .. dpkg-deb: building package 'quicktree' in '../quicktree_2.5-5_mips64el.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/quicktree/dbgsym-root .. dpkg-deb: building package 'quicktree-dbgsym' in '../quicktree-dbgsym_2.5-5_mips64el.deb'. dpkg-deb --root-owner-group --build debian/libquicktree-dev .. dpkg-deb: building package 'libquicktree-dev' in '../libquicktree-dev_2.5-5_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../quicktree_2.5-5_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-08-12T11:54:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ quicktree_2.5-5_mips64el.changes: --------------------------------- Format: 1.8 Date: Fri, 07 Aug 2020 16:37:52 +0530 Source: quicktree Binary: libquicktree-dev quicktree quicktree-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 2.5-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: libquicktree-dev - Neighbor-Joining algorithm for phylogenies (development) quicktree - Neighbor-Joining algorithm for phylogenies Changes: quicktree (2.5-5) unstable; urgency=medium . * Team Upload. * Add autopkgtests * Install relevant examples * Fix spellings Checksums-Sha1: 8ce9f51b0631e672641522805541cdf66e3ea595 26008 libquicktree-dev_2.5-5_mips64el.deb 1dc34f47998a47898515e77efe26a82be75be6ff 36424 quicktree-dbgsym_2.5-5_mips64el.deb 1be019448587e3289d270181d77b78e243198783 4862 quicktree_2.5-5_mips64el.buildinfo 69a99012fc5548f0415cd3a36d4994b3c5202398 20380 quicktree_2.5-5_mips64el.deb Checksums-Sha256: e5192fa24c7d1e3bdb2757e2b511bd54bd0bccd009b378c4f1a05d29318447bc 26008 libquicktree-dev_2.5-5_mips64el.deb 9d650eb5c91dec2f96291352f2a81c34dfade11b2acdc338af75b12fc6c765c2 36424 quicktree-dbgsym_2.5-5_mips64el.deb 183628820597d2c2191e756c0df7e5144157a5c7732d95d11fd965304d7812c0 4862 quicktree_2.5-5_mips64el.buildinfo ceb3ed2b6e69fd184eb34a72e1d5017563e70b121c23ec1910406eef6a10f81c 20380 quicktree_2.5-5_mips64el.deb Files: 9a24f5f8ba77a31ab0660fd1fb38532b 26008 libdevel optional libquicktree-dev_2.5-5_mips64el.deb 054bcdcb495ac3c799ecd9ed9b7699a3 36424 debug optional quicktree-dbgsym_2.5-5_mips64el.deb 72c8075cf1716bcda19217cf69b541f2 4862 science optional quicktree_2.5-5_mips64el.buildinfo 259de565e737d9a8ad0de00bbed7915b 20380 science optional quicktree_2.5-5_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: quicktree Binary: libquicktree-dev quicktree quicktree-dbgsym Architecture: mips64el Version: 2.5-5 Checksums-Md5: 9a24f5f8ba77a31ab0660fd1fb38532b 26008 libquicktree-dev_2.5-5_mips64el.deb 054bcdcb495ac3c799ecd9ed9b7699a3 36424 quicktree-dbgsym_2.5-5_mips64el.deb 259de565e737d9a8ad0de00bbed7915b 20380 quicktree_2.5-5_mips64el.deb Checksums-Sha1: 8ce9f51b0631e672641522805541cdf66e3ea595 26008 libquicktree-dev_2.5-5_mips64el.deb 1dc34f47998a47898515e77efe26a82be75be6ff 36424 quicktree-dbgsym_2.5-5_mips64el.deb 69a99012fc5548f0415cd3a36d4994b3c5202398 20380 quicktree_2.5-5_mips64el.deb Checksums-Sha256: e5192fa24c7d1e3bdb2757e2b511bd54bd0bccd009b378c4f1a05d29318447bc 26008 libquicktree-dev_2.5-5_mips64el.deb 9d650eb5c91dec2f96291352f2a81c34dfade11b2acdc338af75b12fc6c765c2 36424 quicktree-dbgsym_2.5-5_mips64el.deb ceb3ed2b6e69fd184eb34a72e1d5017563e70b121c23ec1910406eef6a10f81c 20380 quicktree_2.5-5_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 12 Aug 2020 11:54:06 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-3), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-7), binutils (= 2.35-1), binutils-common (= 2.35-1), binutils-x86-64-linux-gnu (= 2.35-1), bsdextrautils (= 2.36-2), bsdutils (= 1:2.36-2), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-3), cpp (= 4:10.1.0-1), cpp-10 (= 10.2.0-5), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2), debianutils (= 4.11), dh-autoreconf (= 19), dh-exec (= 0.23.2), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:10.1.0-1), g++-10 (= 10.2.0-5), gcc (= 4:10.1.0-1), gcc-10 (= 10.2.0-5), gcc-10-base (= 10.2.0-5), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), help2man (= 1.47.16), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-5), libatomic1 (= 10.2.0-5), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.35-1), libblkid1 (= 2.36-2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-3), libc-dev-bin (= 2.31-3), libc6 (= 2.31-3), libc6-dev (= 2.31-3), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-5), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.35-1), libctf0 (= 2.35-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.253), libdebhelper-perl (= 13.2), libdpkg-perl (= 1.20.5), libelf1 (= 0.180-1+b1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-5), libgcc-s1 (= 10.2.0-5), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.4-1), libgmp10 (= 2:6.2.0+dfsg-6), libgomp1 (= 10.2.0-5), libgpg-error0 (= 1.38-2), libicu67 (= 67.1-3), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-5), liblocale-gettext-perl (= 1.07-4), liblsan0 (= 10.2.0-5), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-2), libmpc3 (= 1.2.0~rc1-1), libmpfr6 (= 4.1.0-3), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10.2.0-5), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.1-2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.36-2), libstdc++-10-dev (= 10.2.0-5), libstdc++6 (= 10.2.0-5), libsub-override-perl (= 0.09-2), libsystemd0 (= 246-2), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-5), libubsan1 (= 10.2.0-5), libuchardet0 (= 0.0.7-1), libudev1 (= 246-2), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-2), libxml2 (= 2.9.10+dfsg-5+b1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.7.10-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.36-2), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1596798472" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libquicktree-dev_2.5-5_mips64el.deb ----------------------------------- new Debian package, version 2.0. size 26008 bytes: control archive=1348 bytes. 1112 bytes, 26 lines control 1036 bytes, 15 lines md5sums Package: libquicktree-dev Source: quicktree Version: 2.5-5 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 135 Section: libdevel Priority: optional Homepage: https://github.com/khowe/quicktree/ Description: Neighbor-Joining algorithm for phylogenies (development) QuickTree is an efficient implementation of the Neighbor-Joining algorithm (PMID: 3447015), capable of reconstructing phylogenies from huge alignments in time less than the age of the universe. . QuickTree accepts both distance matrix and multiple-sequence-aligment inputs. The former should be in PHYLIP format. The latter should be in Stockholm format, which is the native alignment format for the Pfam database. Alignments in various formats can be converted to Stockholm format with the sreformat program, which is part of the HMMer package (hmmer.org). . The tress are written to stdout, in the Newick/New-Hampshire format use by PHYLIP and many other programs . This package contains some header files from quicktree that are used by other packages. drwxr-xr-x root/root 0 2020-08-07 11:07 ./ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/include/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/include/quicktree/ -rw-r--r-- root/root 3691 2019-03-25 14:29 ./usr/include/quicktree/align.h -rw-r--r-- root/root 1845 2019-03-25 14:29 ./usr/include/quicktree/aln2dist.h -rw-r--r-- root/root 1991 2019-03-25 14:29 ./usr/include/quicktree/aln2tree.h -rw-r--r-- root/root 4993 2019-03-25 14:29 ./usr/include/quicktree/buildtree.h -rw-r--r-- root/root 6506 2019-03-25 14:29 ./usr/include/quicktree/cluster.h -rw-r--r-- root/root 1986 2019-03-25 14:29 ./usr/include/quicktree/dist2tree.h -rw-r--r-- root/root 7468 2019-03-25 14:29 ./usr/include/quicktree/distancemat.h -rw-r--r-- root/root 2054 2019-03-25 14:29 ./usr/include/quicktree/options.h -rw-r--r-- root/root 2584 2019-03-25 14:29 ./usr/include/quicktree/sequence.h -rw-r--r-- root/root 14344 2019-03-25 14:29 ./usr/include/quicktree/tree.h -rw-r--r-- root/root 3782 2019-03-25 14:29 ./usr/include/quicktree/util.h -rw-r--r-- root/root 1220 2019-03-25 14:29 ./usr/include/quicktree/version.h drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/lib/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/lib/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 65590 2020-08-07 11:07 ./usr/lib/mips64el-linux-gnuabi64/libquicktree.a drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/doc/libquicktree-dev/ -rw-r--r-- root/root 499 2020-08-07 11:07 ./usr/share/doc/libquicktree-dev/changelog.Debian.gz -rw-r--r-- root/root 1044 2020-08-07 11:06 ./usr/share/doc/libquicktree-dev/copyright quicktree-dbgsym_2.5-5_mips64el.deb ----------------------------------- new Debian package, version 2.0. size 36424 bytes: control archive=536 bytes. 376 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: quicktree-dbgsym Source: quicktree Version: 2.5-5 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 55 Depends: quicktree (= 2.5-5) Section: debug Priority: optional Description: debug symbols for quicktree Build-Ids: a72f90ffa713ad7540ff5062345211df59e3e77e drwxr-xr-x root/root 0 2020-08-07 11:07 ./ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/lib/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/lib/debug/.build-id/a7/ -rw-r--r-- root/root 45920 2020-08-07 11:07 ./usr/lib/debug/.build-id/a7/2f90ffa713ad7540ff5062345211df59e3e77e.debug drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-08-07 11:07 ./usr/share/doc/quicktree-dbgsym -> quicktree quicktree_2.5-5_mips64el.deb ---------------------------- new Debian package, version 2.0. size 20380 bytes: control archive=1048 bytes. 1028 bytes, 24 lines control 351 bytes, 5 lines md5sums Package: quicktree Version: 2.5-5 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 60 Depends: libc6 (>= 2.29) Suggests: hmmer | hmmer2 Section: science Priority: optional Homepage: https://github.com/khowe/quicktree/ Description: Neighbor-Joining algorithm for phylogenies QuickTree is an efficient implementation of the Neighbor-Joining algorithm (PMID: 3447015), capable of reconstructing phylogenies from huge alignments in time less than the age of the universe. . QuickTree accepts both distance matrix and multiple-sequence-aligment inputs. The former should be in PHYLIP format. The latter should be in Stockholm format, which is the native alignment format for the Pfam database. Alignments in various formats can be converted to Stockholm format with the sreformat program, which is part of the HMMer package (hmmer.org). . The tress are written to stdout, in the Newick/New-Hampshire format use by PHYLIP and many other programs drwxr-xr-x root/root 0 2020-08-07 11:07 ./ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/bin/ -rwxr-xr-x root/root 43080 2020-08-07 11:07 ./usr/bin/quicktree drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/doc/quicktree/ -rw-r--r-- root/root 499 2020-08-07 11:07 ./usr/share/doc/quicktree/changelog.Debian.gz -rw-r--r-- root/root 1044 2020-08-07 11:06 ./usr/share/doc/quicktree/copyright drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/doc/quicktree/examples/ -rw-r--r-- root/root 2950 2020-08-07 11:05 ./usr/share/doc/quicktree/examples/cysprot.stockholm drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/man/ drwxr-xr-x root/root 0 2020-08-07 11:07 ./usr/share/man/man1/ -rw-r--r-- root/root 443 2020-08-07 11:07 ./usr/share/man/man1/quicktree.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [547 B] Get:5 copy:/<>/apt_archive ./ Packages [637 B] Fetched 2147 B in 0s (84.1 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libdata-dump-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 7990 kB of archives. After this operation, 23.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.32.3-1 [753 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 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http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.89.0 [1297 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7990 kB in 0s (34.0 MB/s) Selecting previously unselected package readline-common. 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Unpacking sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b3) ... Setting up libunicode-utf8-perl (0.62-1+b1) ... Setting up libstruct-dumb-perl (0.12-1) ... Setting up libmouse-perl (2.5.10-1) ... Setting up libdata-messagepack-perl (1.00-4) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libclone-perl (0.45-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libcpanel-json-xs-perl (4.19-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b1) ... Setting up unzip (6.0-25) ... Setting up libsqlite3-0:amd64 (3.32.3-1) ... Setting up libfuture-perl (0.45-1) ... Setting up libyaml-libyaml-perl (0.82+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... 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Setting up libparams-util-perl (1.07-3+b5) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libdata-validate-domain-perl (0.10-1) ... Setting up libpath-tiny-perl (0.114-1) ... Setting up lzop (1.04-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b5) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b7) ... Setting up libperlio-gzip-perl (0.19-1+b6) ... Setting up readline-common (8.0-4) ... Setting up libsereal-decoder-perl (4.018+ds-1) ... Setting up liburi-perl (1.76-2) ... Setting up libemail-address-xs-perl (1.04-1+b2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtype-tiny-perl (1.010002-1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libtest-metrics-any-perl (0.01-2) ... Setting up libio-async-perl (0.77-3) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libhtml-parser-perl (3.72-5) ... Setting up gpgconf (2.2.20-1) ... Setting up gpg (2.2.20-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1) ... Setting up libiterator-util-perl (0.02+ds1-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libio-async-loop-epoll-perl (0.21-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004000-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.89.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-3) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1396 Build-Time: 6 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 18 Job: quicktree_2.5-5 Lintian: pass Machine Architecture: amd64 Package: quicktree Package-Time: 44 Source-Version: 2.5-5 Space: 1396 Status: successful Version: 2.5-5 -------------------------------------------------------------------------------- Finished at 2020-08-12T11:54:06Z Build needed 00:00:44, 1396k disk space