sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | raxml 8.2.12+dfsg-6 (ppc64el) Sat, 25 Apr 2020 07:56:03 +0000 | +==============================================================================+ Package: raxml Version: 8.2.12+dfsg-6 Source Version: 8.2.12+dfsg-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-9e9a70b7-2084-40c9-833d-a3424d1edc26' with '<>' I: NOTICE: Log filtering will replace 'build/raxml-fSiNv4/resolver-AcBifX' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [8042 kB] Fetched 8042 kB in 2s (4733 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'raxml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/raxml.git Please use: git clone https://salsa.debian.org/med-team/raxml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 981 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main raxml 8.2.12+dfsg-6 (dsc) [1954 B] Get:2 http://debian.oregonstate.edu/debian unstable/main raxml 8.2.12+dfsg-6 (tar) [959 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main raxml 8.2.12+dfsg-6 (diff) [19.5 kB] Fetched 981 kB in 0s (46.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/raxml-fSiNv4/raxml-8.2.12+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/raxml-fSiNv4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 12), libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [410 B] Get:5 copy:/<>/apt_archive ./ Packages [497 B] Fetched 1864 B in 0s (71.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdmainutils build-essential cpp-9-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-9-base:ppc64el gcc-9-cross-base gcc-9-powerpc64le-linux-gnu gcc-9-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan5-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbsd0 libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:ppc64el libgcc-9-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libglib2.0-0 libgomp1:ppc64el libgomp1-ppc64el-cross libicu63 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libsigsegv2 libsimde-dev libstdc++-9-dev libstdc++-9-dev:ppc64el libstdc++-9-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el glibc-doc manpages-dev:ppc64el libstdc++-9-doc libstdc++-9-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:ppc64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdmainutils build-essential cpp-9-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-9-base:ppc64el gcc-9-cross-base gcc-9-powerpc64le-linux-gnu gcc-9-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan5-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libbsd0 libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:ppc64el libgcc-9-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libglib2.0-0 libgomp1:ppc64el libgomp1-ppc64el-cross libicu63 libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1 libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libsigsegv2 libsimde-dev libstdc++-9-dev libstdc++-9-dev:ppc64el libstdc++-9-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 81.8 MB of archives. After this operation, 362 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-10-base ppc64el 10-20200418-1 [196 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-9-base ppc64el 9.3.0-10 [196 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.34-6 [2253 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-4 [2629 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-10 [1699 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-10 [10.7 MB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-powerpc64le-linux-gnu-base amd64 9.3.0-8cross1 [196 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-powerpc64le-linux-gnu amd64 9.3.0-8cross1 [6744 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-8cross1 [192 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10-20200418-1cross1 [192 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.30-2cross1 [1524 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 10-20200418-1cross1 [30.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 10-20200418-1cross1 [106 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 10-20200418-1cross1 [28.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 10-20200418-1cross1 [9700 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-ppc64el-cross all 9.3.0-8cross1 [401 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 10-20200418-1cross1 [155 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 10-20200418-1cross1 [317 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 10-20200418-1cross1 [504 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 10-20200418-1cross1 [147 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 10-20200418-1cross1 [152 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-ppc64el-cross all 9.3.0-8cross1 [1261 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-powerpc64le-linux-gnu amd64 9.3.0-8cross1 [7130 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [1480 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.4.19-1cross1 [1167 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.30-2cross1 [2651 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-ppc64el-cross all 9.3.0-8cross1 [1729 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-powerpc64le-linux-gnu amd64 9.3.0-8cross1 [7335 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:9.2.1-3.1 [1188 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.8 [6652 B] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13 [184 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.0-1 [14.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.2-1 [1343 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13 [1002 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-s1 ppc64el 10-20200418-1 [30.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.4.16-1 [97.9 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.30-4 [2810 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan5 ppc64el 9.3.0-10 [408 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 10-20200418-1 [9860 B] Get:91 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.5.17-1 [1086 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt-dev ppc64el 1:4.4.16-1 [121 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.30-4 [2657 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 10-20200418-1 [107 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 10-20200418-1 [28.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 10-20200418-1 [155 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 10-20200418-1 [324 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 10-20200418-1 [545 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 10-20200418-1 [147 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 10-20200418-1 [152 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-9-dev ppc64el 9.3.0-10 [1256 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libsimde-dev all 0.0.0.git.20200424-1 [87.6 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-9-dev ppc64el 9.3.0-10 [1749 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 81.8 MB in 1s (111 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12631 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... 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Setting up libc6-ppc64el-cross (2.30-2cross1) ... Setting up libdebhelper-perl (13) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up linux-libc-dev:ppc64el (5.5.17-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up gcc-9-powerpc64le-linux-gnu-base:amd64 (9.3.0-8cross1) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-9-powerpc64le-linux-gnu (9.3.0-8cross1) ... Setting up gcc-10-base:ppc64el (10-20200418-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.3.0-8cross1) ... Setting up gcc-10-cross-base (10-20200418-1cross1) ... Setting up libitm1-ppc64el-cross (10-20200418-1cross1) ... Setting up libatomic1-ppc64el-cross (10-20200418-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up linux-libc-dev-ppc64el-cross (5.4.19-1cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-4) ... Setting up libgcc-s1-ppc64el-cross (10-20200418-1cross1) ... Setting up binutils-powerpc64le-linux-gnu (2.34-6) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up cpp-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up gcc-9-base:ppc64el (9.3.0-10) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-10) ... Setting up libc6-dev-ppc64el-cross (2.30-2cross1) ... Setting up libtool (2.4.6-14) ... Setting up libquadmath0-ppc64el-cross (10-20200418-1cross1) ... Setting up libasan5-ppc64el-cross (9.3.0-8cross1) ... Setting up m4 (1.4.18-4) ... Setting up libgomp1-ppc64el-cross (10-20200418-1cross1) ... Setting up liblsan0-ppc64el-cross (10-20200418-1cross1) ... Setting up libtsan0-ppc64el-cross (10-20200418-1cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.3.0-10) ... Setting up libstdc++6-ppc64el-cross (10-20200418-1cross1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libubsan1-ppc64el-cross (10-20200418-1cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-9-dev-ppc64el-cross (9.3.0-8cross1) ... Setting up gcc-9-powerpc64le-linux-gnu (9.3.0-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-ppc64el-cross (9.3.0-8cross1) ... Setting up gcc-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-9-powerpc64le-linux-gnu (9.3.0-8cross1) ... Setting up g++-powerpc64le-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-ppc64el (12.8) ... Setting up libcrypt1:ppc64el (1:4.4.16-1) ... Setting up libgcc-s1:ppc64el (10-20200418-1) ... Setting up libc6:ppc64el (2.30-4) ... Setting up libcrypt-dev:ppc64el (1:4.4.16-1) ... Setting up libc6-dev:ppc64el (2.30-4) ... Setting up libstdc++6:ppc64el (10-20200418-1) ... Setting up liblsan0:ppc64el (10-20200418-1) ... Setting up libitm1:ppc64el (10-20200418-1) ... Setting up libtsan0:ppc64el (10-20200418-1) ... Setting up debhelper (13) ... Setting up libgomp1:ppc64el (10-20200418-1) ... Setting up dh-autoreconf (19) ... Setting up libasan5:ppc64el (9.3.0-10) ... Setting up libquadmath0:ppc64el (10-20200418-1) ... Setting up libatomic1:ppc64el (10-20200418-1) ... Setting up libubsan1:ppc64el (10-20200418-1) ... Setting up libgcc-9-dev:ppc64el (9.3.0-10) ... Setting up libstdc++-9-dev:ppc64el (9.3.0-10) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.30-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-6 dpkg-dev_1.19.7 g++-9_9.3.0-10 gcc-9_9.3.0-10 libc6-dev_2.30-4 libstdc++-9-dev_9.3.0-10 libstdc++-9-dev-ppc64el-cross_9.3.0-8cross1 libstdc++6_10-20200418-1 libstdc++6-ppc64el-cross_10-20200418-1cross1 linux-libc-dev_5.5.17-1 Package versions: adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-6 binutils-common_2.34-6 binutils-powerpc64le-linux-gnu_2.34-6 binutils-x86-64-linux-gnu_2.34-6 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-3 cpp-9_9.3.0-10 cpp-9-powerpc64le-linux-gnu_9.3.0-8cross1 cpp-powerpc64le-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-ppc64el_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-10 g++-9-powerpc64le-linux-gnu_9.3.0-8cross1 g++-powerpc64le-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200418-1 gcc-10-cross-base_10-20200418-1cross1 gcc-8-base_8.4.0-3 gcc-9_9.3.0-10 gcc-9-base_9.3.0-10 gcc-9-cross-base_9.3.0-8cross1 gcc-9-powerpc64le-linux-gnu_9.3.0-8cross1 gcc-9-powerpc64le-linux-gnu-base_9.3.0-8cross1 gcc-powerpc64le-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-7 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libasan5_9.3.0-10 libasan5-ppc64el-cross_9.3.0-8cross1 libatomic1_10-20200418-1 libatomic1-ppc64el-cross_10-20200418-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34-6 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-4 libc-dev-bin_2.30-4 libc6_2.30-4 libc6-dev_2.30-4 libc6-dev-ppc64el-cross_2.30-2cross1 libc6-ppc64el-cross_2.30-2cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10-20200418-1 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-6 libctf0_2.34-6 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_13 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.8.0-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-10 libgcc-9-dev-ppc64el-cross_9.3.0-8cross1 libgcc-s1_10-20200418-1 libgcc-s1-ppc64el-cross_10-20200418-1cross1 libgcc1_1:10-20200418-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10-20200418-1 libgomp1-ppc64el-cross_10-20200418-1cross1 libgpg-error0_1.37-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10-20200418-1 libitm1-ppc64el-cross_10-20200418-1cross1 liblocale-gettext-perl_1.07-4 liblsan0_10-20200418-1 liblsan0-ppc64el-cross_10-20200418-1cross1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-3 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libquadmath0_10-20200418-1 libquadmath0-ppc64el-cross_10-20200418-1cross1 libseccomp2_2.4.3-1+b1 libselinux1_3.0-1+b3 libsemanage-common_3.0-1 libsemanage1_3.0-1+b3 libsepol1_3.0-1 libsigsegv2_2.12-2 libsimde-dev_0.0.0.git.20200424-1 libsmartcols1_2.34-0.1 libss2_1.45.6-1 libstdc++-9-dev_9.3.0-10 libstdc++-9-dev-ppc64el-cross_9.3.0-8cross1 libstdc++6_10-20200418-1 libstdc++6-ppc64el-cross_10-20200418-1cross1 libsub-override-perl_0.09-2 libsystemd0_245.5-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200418-1 libtsan0-ppc64el-cross_10-20200418-1cross1 libubsan1_10-20200418-1 libubsan1-ppc64el-cross_10-20200418-1cross1 libuchardet0_0.0.6-3 libudev1_245.5-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.5.17-1 linux-libc-dev-ppc64el-cross_5.4.19-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-10 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: raxml Binary: raxml Architecture: any Version: 8.2.12+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.exelixis-lab.org/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/raxml Vcs-Git: https://salsa.debian.org/med-team/raxml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), libsimde-dev Package-List: raxml deb science optional arch=any Checksums-Sha1: 6edd346413be6cc1fd31863e3cb39d0a52e52473 959232 raxml_8.2.12+dfsg.orig.tar.xz 50ef1b9df6608a9e31142b5cd87114ac265ce5d1 19540 raxml_8.2.12+dfsg-6.debian.tar.xz Checksums-Sha256: ac42bd6e3aef6d5c1671a813bab8ce1faab3d86153688144d332e11ca01c6515 959232 raxml_8.2.12+dfsg.orig.tar.xz 9831e3547671bdcf604ae37ff6990b5aa58bea41cabe6bec391b3f4e90e09ccb 19540 raxml_8.2.12+dfsg-6.debian.tar.xz Files: 74a6cdbd23618eb599fc07587aba948a 959232 raxml_8.2.12+dfsg.orig.tar.xz 66c5d0eb2a826011725389653fc6326a 19540 raxml_8.2.12+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl6d0YoACgkQPCZ2P2xn 5uIgvg//Rf5Z9m8lIFbZbEAw6CcWCpG5l3VfseYnGecDdSAPwyrkoLhdYSKhiCzp fOK6ZrEydh+tYgeox4u7La+pLq1S3UUBZmpr75CuHY+fDfwhePmCerGiM0HmyS5Y p9U23yUW6E7cPx19aIQzb+2ZTxzaTGW2e2R2gxhsh/wW2flLOmSJan/vMicU9qHt 2tt0hRT0QGZahtS3+PUg5XzK2aQJAB+RoFC+C36w7W5Dl1+FAEPdO3n5fdEjCZ0g T7zWkw83NeGEnSuw4ZcW6shddb7T35RDH9cwzwUQm7SWzMVVXPwAWaIr8obX/96s v7e5lQTt4mVBN9DsvcSJ0Rdh2O2ek9t5Yy9YXyPO/0PGjmkWqLJ6+428T3YhAtzV 2roh78VvUGVdoD8u8pCMAWF/wkUFMHeXQPI5O8r0mzbZdF9RRRXEEA4aoRfPPgzA T28j85aO/6/H8zQvVcjGhW5G4YGtIPA+VEH1e1UsTMfGvvIwO3OmlJ9JJ+lYydXn 6X3mV5UQUXGhF3ZLIQIEQklMSlEy1Uhn+mRcqeo6n6m5+vU2xMO/XkZmlqNL3Ddg wuwpxDP7YXscPmz2f+kn+x83+955YrnacdeCCKRrXleSSYRVUHj0WAWULNRP0olc CZyVY4duBU+7M9REW1GbAsUXTTVDHFdUSwZLA6jEWxPKldGp8UU= =NdmB -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Apr 20 16:44:58 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./raxml_8.2.12+dfsg-6.dsc dpkg-source: info: extracting raxml in /<> dpkg-source: info: unpacking raxml_8.2.12+dfsg.orig.tar.xz dpkg-source: info: unpacking raxml_8.2.12+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde dpkg-source: info: applying hardening Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-9e9a70b7-2084-40c9-833d-a3424d1edc26 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package raxml dpkg-buildpackage: info: source version 8.2.12+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' for mfile in Makefile.AVX.PTHREADS.gcc; do /usr/bin/make -f ${mfile} clean ; done make[2]: Entering directory '/<>' rm -f *.o raxmlHPC-PTHREADS-AVX make[2]: Leaving directory '/<>' rm -rf /<>/debian/tmpbuild make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p /<>/debian/tmpbuild set -e ; for mfile in Makefile.AVX.PTHREADS.gcc; do \ dh_auto_build --buildsystem=makefile -- -f ${mfile} CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3"; \ curexe=`ls raxmlHPC* | head -n 1` ; \ if [ -e /<>/debian/tmpbuild/${curexe} ] ; then \ echo "**** ERROR: ${curexe} was created before!!" && false ; \ else \ mv ${curexe} /<>/debian/tmpbuild/${curexe} ; \ fi ; \ /usr/bin/make -f ${mfile} clean ; \ done make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=powerpc64le-linux-gnu-pkg-config CXX=powerpc64le-linux-gnu-g\+\+ CC=powerpc64le-linux-gnu-gcc -f Makefile.AVX.PTHREADS.gcc "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" make[2]: Entering directory '/<>' rm -f *.o raxmlHPC-PTHREADS-AVX powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiple.o multiple.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rapidBootstrap.o rapidBootstrap.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o classify.o classify.c powerpc64le-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -o fastDNAparsimony.o fastDNAparsimony.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fastSearch.o fastSearch.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o leaveDropping.o leaveDropping.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rmqs.o rmqs.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rogueEPA.o rogueEPA.c powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ancestralStates.o ancestralStates.c powerpc64le-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c:27:1: note: the layout of aggregates containing vectors with 32-byte alignment has changed in GCC 5 27 | } absMask_AVX = {{0x7fffffffffffffffULL, 0x7fffffffffffffffULL, 0x7fffffffffffffffULL, 0x7fffffffffffffffULL}}; | ^ avxLikelihood.c: In function ‘hadd3’: avxLikelihood.c:49:23: warning: GCC vector passed by reference: non-standard ABI extension with no compatibility guarantee [-Wpsabi] 49 | static inline __m256d hadd3(__m256d v) | ^~~~~ powerpc64le-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mem_alloc.o mem_alloc.c powerpc64le-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -o eigen.o eigen.c powerpc64le-linux-gnu-gcc -o raxmlHPC-PTHREADS-AVX axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o eigen.o -lm -pthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' rm -f *.o raxmlHPC-PTHREADS-AVX make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install dh_link usr/bin/raxmlHPC-PTHREADS-AVX usr/bin/raxmlHPC make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples # fix perl path in example scripts for pscript in `ls usefulScripts/*.pl` ; do \ sed 's?/usr/local/bin/perl?/usr/bin/perl?' ${pscript} > /<>/debian/raxml/usr/share/doc/raxml/examples/`basename ${pscript}` ; \ done make[1]: Leaving directory '/<>' debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman for cexe in `ls /<>/debian/tmpbuild/raxmlHPC*` ; do \ curexe=`basename ${cexe}` ; \ if [ ${curexe} != raxmlHPC ] ; then \ ln -s raxmlHPC.1.gz /<>/debian/raxml/usr/share/man/man1/${curexe}.1.gz ; \ fi ; \ done make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.0.0.git.20200424-1), " make[1]: Leaving directory '/<>' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'raxml' in '../raxml_8.2.12+dfsg-6_ppc64el.deb'. dpkg-deb: building package 'raxml-dbgsym' in '../raxml-dbgsym_8.2.12+dfsg-6_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../raxml_8.2.12+dfsg-6_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-25T07:57:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ raxml_8.2.12+dfsg-6_ppc64el.changes: ------------------------------------ Format: 1.8 Date: Mon, 20 Apr 2020 18:44:08 +0200 Source: raxml Binary: raxml raxml-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 8.2.12+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: raxml - Randomized Axelerated Maximum Likelihood of phylogenetic trees Changes: raxml (8.2.12+dfsg-6) unstable; urgency=medium . * Team upload. * Switch to libsimde-dev package from our code copy Checksums-Sha1: f0060a98e0a241c0bfdfd2454810a56a56abe2db 1062024 raxml-dbgsym_8.2.12+dfsg-6_ppc64el.deb 8f677f9652634a7bdf6268c8899fddfecd3cd8fe 4751 raxml_8.2.12+dfsg-6_ppc64el.buildinfo 036db217edb324445faf031ce7ce21eb31fdd3fc 1054908 raxml_8.2.12+dfsg-6_ppc64el.deb Checksums-Sha256: 71c1d4fefe40458ef4a105fa39406613bdbfffc114a3b5fcc283849c2546ddb4 1062024 raxml-dbgsym_8.2.12+dfsg-6_ppc64el.deb 73f4660dc10069e7e46c958036acd7ccfd971922042b9bb8dd31c1c8a925dc67 4751 raxml_8.2.12+dfsg-6_ppc64el.buildinfo 77b4bcfeaf4213c5840a683c74eb69f70f84c31cd0b6692dc6013e7e43a75c2b 1054908 raxml_8.2.12+dfsg-6_ppc64el.deb Files: 2088f13be5fc4564226af9620130c903 1062024 debug optional raxml-dbgsym_8.2.12+dfsg-6_ppc64el.deb 2dc50663f9611889f3f8180419553889 4751 science optional raxml_8.2.12+dfsg-6_ppc64el.buildinfo 9038741063f9c6f601adecf0253707f5 1054908 science optional raxml_8.2.12+dfsg-6_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: raxml Binary: raxml Architecture: ppc64el Version: 8.2.12+dfsg-6 Checksums-Md5: 2088f13be5fc4564226af9620130c903 1062024 raxml-dbgsym_8.2.12+dfsg-6_ppc64el.deb 9038741063f9c6f601adecf0253707f5 1054908 raxml_8.2.12+dfsg-6_ppc64el.deb Checksums-Sha1: f0060a98e0a241c0bfdfd2454810a56a56abe2db 1062024 raxml-dbgsym_8.2.12+dfsg-6_ppc64el.deb 036db217edb324445faf031ce7ce21eb31fdd3fc 1054908 raxml_8.2.12+dfsg-6_ppc64el.deb Checksums-Sha256: 71c1d4fefe40458ef4a105fa39406613bdbfffc114a3b5fcc283849c2546ddb4 1062024 raxml-dbgsym_8.2.12+dfsg-6_ppc64el.deb 77b4bcfeaf4213c5840a683c74eb69f70f84c31cd0b6692dc6013e7e43a75c2b 1054908 raxml_8.2.12+dfsg-6_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 25 Apr 2020 07:57:29 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-6), binutils-common (= 2.34-6), binutils-x86-64-linux-gnu (= 2.34-6), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-10), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-10), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200418-1), gcc-9 (= 9.3.0-10), gcc-9-base (= 9.3.0-10), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-7), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-10), libatomic1 (= 10-20200418-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34-6), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.30-4), libc-dev-bin (= 2.30-4), libc6 (= 2.30-4), libc6-dev (= 2.30-4), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10-20200418-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34-6), libctf0 (= 2.34-6), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 13), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.0-1), libgcc-9-dev (= 9.3.0-10), libgcc-s1 (= 10-20200418-1), libgcc1 (= 1:10-20200418-1), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.2-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200418-1), libgpg-error0 (= 1.37-1), libicu63 (= 63.2-3), libisl22 (= 0.22.1-1), libitm1 (= 10-20200418-1), liblsan0 (= 10-20200418-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libncursesw6 (= 6.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-10), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10-20200418-1), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.0-1+b3), libsigsegv2 (= 2.12-2), libsimde-dev (= 0.0.0.git.20200424-1), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.3.0-10), libstdc++6 (= 10-20200418-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.5-1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10-20200418-1), libubsan1 (= 10-20200418-1), libuchardet0 (= 0.0.6-3), libudev1 (= 245.5-1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.10+dfsg-5), linux-libc-dev (= 5.5.17-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.0-10), perl-base (= 5.30.0-10), perl-modules-5.30 (= 5.30.0-10), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1587401048" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ raxml-dbgsym_8.2.12+dfsg-6_ppc64el.deb -------------------------------------- new Debian package, version 2.0. size 1062024 bytes: control archive=540 bytes. 377 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: raxml-dbgsym Source: raxml Version: 8.2.12+dfsg-6 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 1092 Depends: raxml (= 8.2.12+dfsg-6) Section: debug Priority: optional Description: debug symbols for raxml Build-Ids: f1a3fc8716385fa3efa7aa3183eda436b787b64b drwxr-xr-x root/root 0 2020-04-20 16:44 ./ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/lib/ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/lib/debug/.build-id/f1/ -rw-r--r-- root/root 1107528 2020-04-20 16:44 ./usr/lib/debug/.build-id/f1/a3fc8716385fa3efa7aa3183eda436b787b64b.debug drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-04-20 16:44 ./usr/share/doc/raxml-dbgsym -> raxml raxml_8.2.12+dfsg-6_ppc64el.deb ------------------------------- new Debian package, version 2.0. size 1054908 bytes: control archive=1224 bytes. 547 bytes, 14 lines control 1413 bytes, 19 lines md5sums Package: raxml Version: 8.2.12+dfsg-6 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 1828 Depends: libc6 (>= 2.29) Built-Using: simde (= 0.0.0.git.20200424-1) Section: science Priority: optional Homepage: http://www.exelixis-lab.org/ Description: Randomized Axelerated Maximum Likelihood of phylogenetic trees RAxML is a program for sequential and parallel Maximum Likelihood-based inference of large phylogenetic trees. It has originally been derived from fastDNAml. drwxr-xr-x root/root 0 2020-04-20 16:44 ./ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/bin/ lrwxrwxrwx root/root 0 2020-04-20 16:44 ./usr/bin/raxmlHPC -> raxmlHPC-PTHREADS-AVX -rwxr-xr-x root/root 1249936 2020-04-20 16:44 ./usr/bin/raxmlHPC-PTHREADS-AVX drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/doc-base/ -rw-r--r-- root/root 605 2019-12-16 09:46 ./usr/share/doc-base/raxml drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/doc/raxml/ -rw-r--r-- root/root 573025 2018-05-29 04:28 ./usr/share/doc/raxml/NewManual.pdf.gz -rw-r--r-- root/root 2332 2018-05-29 04:28 ./usr/share/doc/raxml/README -rw-r--r-- root/root 446 2019-12-16 09:46 ./usr/share/doc/raxml/README.test -rw-r--r-- root/root 2007 2020-04-20 16:44 ./usr/share/doc/raxml/changelog.Debian.gz -rw-r--r-- root/root 1348 2020-04-20 16:32 ./usr/share/doc/raxml/copyright drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/doc/raxml/examples/ -rw-r--r-- root/root 3264 2020-04-20 16:44 ./usr/share/doc/raxml/examples/ProteinModelSelection.pl -rw-r--r-- root/root 635 2020-04-20 16:44 ./usr/share/doc/raxml/examples/applyRAxML2AllFilesInDirectory.pl -rw-r--r-- root/root 677 2020-04-20 16:44 ./usr/share/doc/raxml/examples/bsBranchLengths.pl -rw-r--r-- root/root 337 2018-05-29 04:28 ./usr/share/doc/raxml/examples/convertFasta2Phylip.sh -rw-r--r-- root/root 355 2019-12-16 09:46 ./usr/share/doc/raxml/run-unit-test drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/doc/raxml/test_data/ -rw-r--r-- root/root 36 2019-12-16 09:46 ./usr/share/doc/raxml/test_data/testData.txt -rw-r--r-- root/root 36 2019-12-16 09:46 ./usr/share/doc/raxml/test_data/testData1.txt -rw-r--r-- root/root 519 2019-12-16 09:46 ./usr/share/doc/raxml/test_data/testData2.txt -rw-r--r-- root/root 19 2019-12-16 09:46 ./usr/share/doc/raxml/test_data/testTree.txt -rw-r--r-- root/root 19 2019-12-16 09:46 ./usr/share/doc/raxml/test_data/testTree1.txt -rw-r--r-- root/root 65 2019-12-16 09:46 ./usr/share/doc/raxml/test_data/testTree2.txt drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/man/ drwxr-xr-x root/root 0 2020-04-20 16:44 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2020-04-20 16:44 ./usr/share/man/man1/raxmlHPC-PTHREADS-AVX.1.gz -> raxmlHPC.1.gz -rw-r--r-- root/root 9429 2020-04-20 16:44 ./usr/share/man/man1/raxmlHPC.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [540 B] Get:5 copy:/<>/apt_archive ./ Packages [626 B] Fetched 2129 B in 0s (101 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-socket-ssl-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-socket-ssl-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:ppc64el t1utils 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 9221 kB of archives. After this operation, 26.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-5 [661 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 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http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-5 [105 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.12-1 [12.9 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004000-1 [12.5 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.112-1 [53.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.011+ds-1 [106 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.011+ds-1 [108 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010001-1 [338 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [35.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.67.0 [1287 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9221 kB in 0s (47.5 MB/s) Selecting previously unselected package readline-common. (Reading database ... 20273 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libjson-maybexs-perl (1.004000-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up libxml-writer-perl (0.625-1) ... Setting up t1utils (1.41-4) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3200-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.112-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (6.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b3) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-4) ... Setting up libsereal-decoder-perl (4.011+ds-1) ... Setting up liburi-perl (1.76-2) ... Setting up libnet-ssleay-perl (1.88-3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up libtype-tiny-perl (1.010001-1) ... Setting up libnet-dns-perl (1.23-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-5) ... Setting up gpgconf (2.2.20-1) ... Setting up libio-socket-ssl-perl (2.067-1) ... Setting up gpg (2.2.20-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004000-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.67.0) ... Setting up sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ... Processing triggers for man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.30-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 15176 Build-Time: 59 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 18 Job: raxml_8.2.12+dfsg-6 Lintian: pass Machine Architecture: amd64 Package: raxml Package-Time: 86 Source-Version: 8.2.12+dfsg-6 Space: 15176 Status: successful Version: 8.2.12+dfsg-6 -------------------------------------------------------------------------------- Finished at 2020-04-25T07:57:29Z Build needed 00:01:26, 15176k disk space