sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | readseq 1-15 (ppc64el) Tue, 15 Oct 2024 04:57:32 +0000 | +==============================================================================+ Package: readseq Version: 1-15 Source Version: 1-15 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-9fb72afe-62ba-4f23-b60f-03224c1b2004' with '<>' I: NOTICE: Log filtering will replace 'build/readseq-l9KEGz/resolver-PahYhN' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [202 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-10-15-0300.55-F-2024-10-15-0300.55.pdiff [19.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-10-15-0300.55-F-2024-10-15-0300.55.pdiff [62.1 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-10-15-0300.55-F-2024-10-15-0300.55.pdiff [19.0 kB] Get:6 http://localhost:3142/debian sid/main ppc64el Packages [9834 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-10-15-0300.55-F-2024-10-15-0300.55.pdiff [62.1 kB] Fetched 10.2 MB in 2s (4968 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'readseq' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/readseq.git Please use: git clone https://salsa.debian.org/med-team/readseq.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 74.7 kB of source archives. Get:1 http://localhost:3142/debian sid/main readseq 1-15 (dsc) [2069 B] Get:2 http://localhost:3142/debian sid/main readseq 1-15 (tar) [54.6 kB] Get:3 http://localhost:3142/debian sid/main readseq 1-15 (diff) [18.1 kB] Fetched 74.7 kB in 1s (125 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/readseq-l9KEGz/readseq-1' with '<>' I: NOTICE: Log filtering will replace 'build/readseq-l9KEGz' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-tools-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), ncbi-tools-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [736 B] Get:5 copy:/<>/apt_archive ./ Packages [781 B] Fetched 2126 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: login mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-14-base:ppc64el gcc-14-cross-base gcc-14-powerpc64le-linux-gnu gcc-14-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:ppc64el libasan8-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libelf1t64 libfakeroot libffi8:ppc64el libfile-stripnondeterminism-perl libgcc-14-dev:ppc64el libgcc-14-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgmp10:ppc64el libgnutls30t64:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libhogweed6t64:ppc64el libicu72 libidn2-0:ppc64el libitm1:ppc64el libitm1-ppc64el-cross liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1t64 libncbi6-dev:ppc64el libncbi6t64:ppc64el libnettle8t64:ppc64el libp11-kit0:ppc64el libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libstdc++-14-dev:ppc64el libstdc++-14-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libtasn1-6:ppc64el libtool libtsan2:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring5:ppc64el libxml2 linux-libc-dev-ppc64el-cross m4 man-db ncbi-data po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el manpages-dev:ppc64el gnutls-bin:ppc64el libstdc++-14-doc:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl ncbi-tools-bin:ppc64el libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-14-base:ppc64el gcc-14-cross-base gcc-14-powerpc64le-linux-gnu gcc-14-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:ppc64el libasan8-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcrypt-dev:ppc64el libcrypt1:ppc64el libdebhelper-perl libelf1t64 libfakeroot libffi8:ppc64el libfile-stripnondeterminism-perl libgcc-14-dev:ppc64el libgcc-14-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgmp10:ppc64el libgnutls30t64:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libhogweed6t64:ppc64el libicu72 libidn2-0:ppc64el libitm1:ppc64el libitm1-ppc64el-cross liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1t64 libncbi6-dev:ppc64el libncbi6t64:ppc64el libnettle8t64:ppc64el libp11-kit0:ppc64el libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libstdc++-14-dev:ppc64el libstdc++-14-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libtasn1-6:ppc64el libtool libtsan2:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring5:ppc64el libxml2 linux-libc-dev-ppc64el-cross m4 man-db ncbi-data po-debconf sbuild-build-depends-main-dummy:ppc64el sensible-utils 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. 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http://localhost:3142/debian sid/main ppc64el libgmp10 ppc64el 2:6.3.0+dfsg-2+b1 [571 kB] Get:76 http://localhost:3142/debian sid/main ppc64el libnettle8t64 ppc64el 3.10-1 [328 kB] Get:77 http://localhost:3142/debian sid/main ppc64el libhogweed6t64 ppc64el 3.10-1 [338 kB] Get:78 http://localhost:3142/debian sid/main ppc64el libunistring5 ppc64el 1.2-1 [431 kB] Get:79 http://localhost:3142/debian sid/main ppc64el libidn2-0 ppc64el 2.3.7-2 [131 kB] Get:80 http://localhost:3142/debian sid/main ppc64el libp11-kit0 ppc64el 0.25.5-2 [424 kB] Get:81 http://localhost:3142/debian sid/main ppc64el libtasn1-6 ppc64el 4.19.0-3+b2 [52.8 kB] Get:82 http://localhost:3142/debian sid/main ppc64el libgnutls30t64 ppc64el 3.8.6-2 [1406 kB] Get:83 http://localhost:3142/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-4 [3540 kB] Get:84 http://localhost:3142/debian sid/main ppc64el libncbi6t64 ppc64el 6.1.20170106+dfsg2-4 [4321 kB] Get:85 http://localhost:3142/debian sid/main ppc64el libncbi6-dev ppc64el 6.1.20170106+dfsg2-4 [5990 kB] Get:86 http://localhost:3142/debian sid/main ppc64el libstdc++-14-dev ppc64el 14.2.0-6 [2500 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 117 MB in 2s (56.8 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14.2.0-6cross1) ... Setting up file (1:5.45-3) ... Setting up libgomp1-ppc64el-cross (14.2.0-6cross1) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-6cross1) ... Setting up autoconf (2.72-3) ... Setting up libitm1-ppc64el-cross (14.2.0-6cross1) ... Setting up libatomic1-ppc64el-cross (14.2.0-6cross1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up linux-libc-dev-ppc64el-cross (6.11.2-1cross1) ... Setting up libgcc-s1-ppc64el-cross (14.2.0-6cross1) ... Setting up binutils-powerpc64le-linux-gnu (2.43.1-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libc6-dev-ppc64el-cross (2.40-3cross1) ... Setting up libtool (2.4.7-7) ... Setting up libquadmath0-ppc64el-cross (14.2.0-6cross1) ... Setting up libasan8-ppc64el-cross (14.2.0-6cross1) ... Setting up liblsan0-ppc64el-cross (14.2.0-6cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libtsan2-ppc64el-cross (14.2.0-6cross1) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-ppc64el-cross (14.2.0-6cross1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libubsan1-ppc64el-cross (14.2.0-6cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-14-dev-ppc64el-cross (14.2.0-6cross1) ... Setting up libstdc++-14-dev-ppc64el-cross (14.2.0-6cross1) ... Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-6cross1) ... Setting up g++-14-powerpc64le-linux-gnu (14.2.0-6cross1) ... Setting up debhelper (13.20) ... Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1) ... Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1) ... Setting up crossbuild-essential-ppc64el (12.12) ... Setting up libgcc-s1:ppc64el (14.2.0-6) ... Setting up libc6:ppc64el (2.40-3) ... Setting up libffi8:ppc64el (3.4.6-1) ... Setting up libasan8:ppc64el (14.2.0-6) ... Setting up libtasn1-6:ppc64el (4.19.0-3+b2) ... Setting up libtsan2:ppc64el (14.2.0-6) ... Setting up libstdc++6:ppc64el (14.2.0-6) ... Setting up liblsan0:ppc64el (14.2.0-6) ... Setting up libitm1:ppc64el (14.2.0-6) ... Setting up libcrypt1:ppc64el (1:4.4.36-5) ... Setting up libgomp1:ppc64el (14.2.0-6) ... Setting up libnettle8t64:ppc64el (3.10-1) ... Setting up libgmp10:ppc64el (2:6.3.0+dfsg-2+b1) ... Setting up libquadmath0:ppc64el (14.2.0-6) ... Setting up libp11-kit0:ppc64el (0.25.5-2) ... Setting up libunistring5:ppc64el (1.2-1) ... Setting up libatomic1:ppc64el (14.2.0-6) ... Setting up libubsan1:ppc64el (14.2.0-6) ... Setting up libhogweed6t64:ppc64el (3.10-1) ... Setting up libcrypt-dev:ppc64el (1:4.4.36-5) ... Setting up libc6-dev:ppc64el (2.40-3) ... Setting up libgcc-14-dev:ppc64el (14.2.0-6) ... Setting up libstdc++-14-dev:ppc64el (14.2.0-6) ... Setting up libidn2-0:ppc64el (2.3.7-2) ... Setting up libgnutls30t64:ppc64el (3.8.6-2) ... Setting up libncbi6t64:ppc64el (6.1.20170106+dfsg2-4) ... Setting up libncbi6-dev:ppc64el (6.1.20170106+dfsg2-4) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-6 gcc-14_14.2.0-6 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-6 libstdc++-14-dev-ppc64el-cross_14.2.0-6cross1 libstdc++6_14.2.0-6 libstdc++6-ppc64el-cross_14.2.0-6cross1 linux-libc-dev_6.11.2-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-5 binutils-common_2.43.1-5 binutils-powerpc64le-linux-gnu_2.43.1-5 binutils-x86-64-linux-gnu_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.2.0-1 cpp-14_14.2.0-6 cpp-14-powerpc64le-linux-gnu_14.2.0-6cross1 cpp-14-x86-64-linux-gnu_14.2.0-6 cpp-powerpc64le-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-ppc64el_12.12 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-6 g++-14-powerpc64le-linux-gnu_14.2.0-6cross1 g++-14-x86-64-linux-gnu_14.2.0-6 g++-powerpc64le-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-6 gcc-14-base_14.2.0-6 gcc-14-cross-base_14.2.0-6cross1 gcc-14-powerpc64le-linux-gnu_14.2.0-6cross1 gcc-14-powerpc64le-linux-gnu-base_14.2.0-6cross1 gcc-14-x86-64-linux-gnu_14.2.0-6 gcc-powerpc64le-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.22.5-2 gettext-base_0.22.5-2 gpgv_2.2.44-1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.25 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-6 libasan8-ppc64el-cross_14.2.0-6cross1 libatomic1_14.2.0-6 libatomic1-ppc64el-cross_14.2.0-6cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-5 libblkid1_2.40.2-9 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-3 libc-dev-bin_2.40-3 libc6_2.40-3 libc6-dev_2.40-3 libc6-dev-ppc64el-cross_2.40-3cross1 libc6-ppc64el-cross_2.40-3cross1 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-6 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-5 libctf0_2.43.1-5 libdb5.3t64_5.3.28+dfsg2-8 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libelf1t64_0.191-2 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-14-dev_14.2.0-6 libgcc-14-dev-ppc64el-cross_14.2.0-6cross1 libgcc-s1_14.2.0-6 libgcc-s1-ppc64el-cross_14.2.0-6cross1 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-6 libgomp1-ppc64el-cross_14.2.0-6cross1 libgpg-error0_1.50-4 libgprofng0_2.43.1-5 libhogweed6t64_3.10-1 libhwasan0_14.2.0-6 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-6 libitm1-ppc64el-cross_14.2.0-6cross1 libjansson4_2.14-2+b2 liblsan0_14.2.0-6 liblsan0-ppc64el-cross_14.2.0-6cross1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-9 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncbi6-dev_6.1.20170106+dfsg2-4 libncbi6t64_6.1.20170106+dfsg2-4 libnettle8t64_3.10-1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.40_5.40.0-6 libpipeline1_1.5.8-1 libquadmath0_14.2.0-6 libquadmath0-ppc64el-cross_14.2.0-6cross1 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-5 libsmartcols1_2.40.2-9 libssl3t64_3.3.2-1 libstdc++-14-dev_14.2.0-6 libstdc++-14-dev-ppc64el-cross_14.2.0-6cross1 libstdc++6_14.2.0-6 libstdc++6-ppc64el-cross_14.2.0-6cross1 libsystemd0_256.7-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-6 libtsan2-ppc64el-cross_14.2.0-6cross1 libubsan1_14.2.0-6 libubsan1-ppc64el-cross_14.2.0-6cross1 libuchardet0_0.0.8-1+b1 libudev1_256.7-1 libunistring5_1.2-1 libuuid1_2.40.2-9 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.11.2-1 linux-libc-dev-ppc64el-cross_6.11.2-1cross1 login_1:4.16.0-2+really2.40.2-9 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 mount_2.40.2-9 ncbi-data_6.1.20170106+dfsg2-4 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-6 perl-base_5.40.0-6 perl-modules-5.40_5.40.0-6 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 tzdata_2024b-3 usr-is-merged_39 util-linux_2.40.2-9 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: readseq Binary: readseq Architecture: any Version: 1-15 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/readseq Vcs-Git: https://salsa.debian.org/med-team/readseq.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-tools-dev Package-List: readseq deb science optional arch=any Checksums-Sha1: 474839186eec28f650ac89a33829673fa40c3bbb 54557 readseq_1.orig.tar.gz 05bd01a71c6861ae69ab5ac0a1d50d05da31b4e6 18120 readseq_1-15.debian.tar.xz Checksums-Sha256: b704d7a12c5d834390f3ed4233f1409c5f1ed53b0b9accf5ab632a513de1183c 54557 readseq_1.orig.tar.gz bef33c029eb0de6a7ea7d4844a2c8dee0acdc3562b8d74b830d84a73d3156226 18120 readseq_1-15.debian.tar.xz Files: 3973daff73375953369c31c5c1661699 54557 readseq_1.orig.tar.gz d9f89d7ecb8cfc662de77713a983685b 18120 readseq_1-15.debian.tar.xz Dgit: 9185439b5da210185b66a337e4a830b7828ffb1a debian archive/debian/1-15 https://git.dgit.debian.org/readseq -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmXzav0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr0Kw/+MhTjbVEzG2p1xd1TpucgukAIqZFb 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dpkg-source: info: extracting readseq in /<> dpkg-source: info: unpacking readseq_1.orig.tar.gz dpkg-source: info: unpacking readseq_1-15.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20-Formats.patch dpkg-source: info: applying 20-Makefile.patch dpkg-source: info: applying 30-arb-code-patches.patch dpkg-source: info: applying 552830.patch dpkg-source: info: applying gcc-4.6_format-security.patch dpkg-source: info: applying enable_tests.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying buffer_overflow.patch dpkg-source: info: applying fix_tests.patch dpkg-source: info: applying fix-gets.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.YUmtY78Nxy/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-9fb72afe-62ba-4f23-b60f-03224c1b2004 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package readseq dpkg-buildpackage: info: source version 1-15 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f *.o core test.* readseq make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f readseq make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=powerpc64le-linux-gnu-pkg-config CXX=powerpc64le-linux-gnu-g\+\+ CC=powerpc64le-linux-gnu-gcc make[1]: Entering directory '/<>' Compiling readseq with NCBI toolkit support and ARB patches powerpc64le-linux-gnu-gcc -o readseq -I/usr/include/ncbi -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -DNCBI -I/usr/include/ncbi -DARB readseq.c ureadseq.c ureadasn.c -lncbi -lncbiobj -lncbicdr -lncbiacc -lncbitool -lncbimmdb -lncbiid1 -lnetcli -lm -Wl,-z,relro -Wl,-z,now readseq.c: In function ‘formatstr’: readseq.c:267:41: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 267 | case kASNseqset : return formats[kASN1-1]; | ~~~~~~~^~~~~~~~~ readseq.c:269:45: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 269 | case kPhylipSequential: return formats[kPhylip-1]; | ~~~~~~~^~~~~~~~~~~ readseq.c:273:22: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 273 | else return formats[format-1]; | ~~~~~~~^~~~~~~~~~ readseq.c: In function ‘Nlm_Main’: readseq.c:936:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 936 | sprintf( stemp,"%s_%d", oname, whichSeq); | ~^ ~~~~~~~~ | | | | int long int | %ld readseq.c:938:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 938 | fprintf( stderr,"Writing sequence %d to file %s\n", whichSeq, stemp); | ~^ ~~~~~~~~ | | | | int long int | %ld readseq.c:980:39: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 980 | fprintf( stderr, "Sequence %d, length= %d, checksum= %X, format= %s, id= %s\n", | ~^ | | | int | %ld 981 | whichSeq, seqlen, checksum, formatstr(format), seqidptr); | ~~~~~~~~ | | | long int readseq.c:980:51: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 980 | fprintf( stderr, "Sequence %d, length= %d, checksum= %X, format= %s, id= %s\n", | ~^ | | | int | %ld 981 | whichSeq, seqlen, checksum, formatstr(format), seqidptr); | ~~~~~~ | | | long int readseq.c:980:65: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 980 | fprintf( stderr, "Sequence %d, length= %d, checksum= %X, format= %s, id= %s\n", | ~^ | | | unsigned int | %lX 981 | whichSeq, seqlen, checksum, formatstr(format), seqidptr); | ~~~~~~~~ | | | long unsigned int readseq.c:998:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 998 | if (phylvers >= 4) fprintf(foo," %d %d\n", i, seqlen); | ~^ ~ | | | | int long int | %ld readseq.c:998:56: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 998 | if (phylvers >= 4) fprintf(foo," %d %d\n", i, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:999:39: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 999 | else fprintf(foo," %d %d YF\n", i, seqlen); | ~^ ~ | | | | int long int | %ld readseq.c:999:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 999 | else fprintf(foo," %d %d YF\n", i, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:1117:31: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1117 | fprintf(foo,"\n %s MSF: %d Type: N %s Check: %d ..\n\n", /* GSt + RL */ | ~^ | | | int | %ld 1118 | cp, seqlen, timestr, checkall); | ~~~~~~ | | | long int readseq.c:1117:55: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long unsigned int’ [-Wformat=] 1117 | fprintf(foo,"\n %s MSF: %d Type: N %s Check: %d ..\n\n", /* GSt + RL */ | ~^ | | | int | %ld 1118 | cp, seqlen, timestr, checkall); | ~~~~~~~~ | | | long unsigned int readseq.c:1133:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1133 | if (phylvers >= 4) fprintf(foo," %d %d\n", seqout, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:1134:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1134 | else fprintf(foo," %d %d YF\n", seqout, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:1158:49: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1158 | fprintf(foo," dimensions ntax=%d nchar=%d;\n", seqout, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c: In function ‘seqFileFormatFp’: ureadseq.c:1535:19: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘long int *’ [-Wformat=] 1535 | sscanf( sp, "%d%d", &nspp, &nlen); | ~^ ~~~~~ | | | | int * long int * | %ld ureadseq.c:1535:21: warning: format ‘%d’ expects argument of type ‘int *’, but argument 4 has type ‘long int *’ [-Wformat=] 1535 | sscanf( sp, "%d%d", &nspp, &nlen); | ~^ ~~~~~ | | | | int * long int * | %ld ureadseq.c: In function ‘writeSeq’: ureadseq.c:1784:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1784 | sprintf(numform, "%d", seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1813:43: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1813 | fprintf(outf,"LOCUS %s %d bp\n", idword, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1814:38: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1814 | fprintf(outf,"DEFINITION %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1814:48: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1814 | fprintf(outf,"DEFINITION %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1828:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1828 | fprintf(outf,"TITLE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1828:52: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1828 | fprintf(outf,"TITLE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1838:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1838 | for (j= 5; j<=width; j += 5) fprintf(outf,"%10d",j); | ~~~^ ~ | | | | | long int | int | %10ld ureadseq.c:1848:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1848 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1848:36: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1848 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1857:31: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1857 | fprintf(outf,"DE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1857:41: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1857 | fprintf(outf,"DE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1858:37: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1858 | fprintf(outf,"SQ %d BP\n", seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1869:38: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1869 | fprintf(outf," %s Length: %d (today) Check: %d ..\n", idword, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1869:58: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1869 | fprintf(outf," %s Length: %d (today) Check: %d ..\n", idword, seqlen, checksum); | ~^ ~~~~~~~~ | | | | int long unsigned int | %ld ureadseq.c:1878:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1878 | fprintf(outf,"; DNA sequence %s, %d bases, %X checksum.\n;\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1878:52: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1878 | fprintf(outf,"; DNA sequence %s, %d bases, %X checksum.\n;\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1884:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1884 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1884:36: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1884 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1915:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1915 | fprintf(outf," repr raw, mol %s, length %d, topology linear,\n", cp, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1937:41: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1937 | fprintf(outf,"[Name: %-16s Len:%6d Check: %8X]\n", idword, seqlen, checksum); | ~~^ ~~~~~~ | | | | int long int | %6ld ureadseq.c:1937:53: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1937 | fprintf(outf,"[Name: %-16s Len:%6d Check: %8X]\n", idword, seqlen, checksum); | ~~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %8lX ureadseq.c:1954:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1954 | fprintf(outf,"Name: %-16s Len:%6d Check: %8X\n", idword, seqlen, checksum); | ~~^ ~~~~~~ | | | | int long int | %6ld ureadseq.c:1954:54: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1954 | fprintf(outf,"Name: %-16s Len:%6d Check: %8X\n", idword, seqlen, checksum); | ~~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %8lX ureadseq.c:1960:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1960 | fprintf(outf," Name: %-16s Len:%6d Check: %5d Weight: 1.00\n", | ~~^ | | | int | %6ld 1961 | idword, seqlen, checksum); | ~~~~~~ | | | long int ureadseq.c:1960:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1960 | fprintf(outf," Name: %-16s Len:%6d Check: %5d Weight: 1.00\n", | ~~^ | | | int | %5ld 1961 | idword, seqlen, checksum); | ~~~~~~~~ | | | long unsigned int ureadseq.c:1972:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1972 | fprintf(outf,";%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1972:37: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1972 | fprintf(outf,";%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1979:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1979 | fprintf(outf,"%4d %-60s\n",seqlen,seqname); | ~~^ ~~~~~~ | | | | int long int | %4ld ureadseq.c:2002:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 2002 | fprintf(outf,">%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:2002:37: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 2002 | fprintf(outf,">%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:2043:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 2043 | if (numline==1) fprintf(outf,"%-9d ",i+1); | ~~~^ ~~~ | | | | int long int | %-9ld ureadseq.c: In function ‘readPAUPinterleaved’: ureadseq.c:213:22: warning: ‘%s’ directive writing up to 255 bytes into a region of size between 246 and 251 [-Wformat-overflow=] 213 | sprintf(si, " %d) %s\n", V->nseq, s); | ^~ In function ‘addinfo’, inlined from ‘readPAUPinterleaved’ at ureadseq.c:813:13: ureadseq.c:213:3: note: ‘sprintf’ output between 7 and 267 bytes into a destination of size 256 213 | sprintf(si, " %d) %s\n", V->nseq, s); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ureadseq.c: In function ‘writeSeq’: ureadseq.c:2007:45: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 2 and 7 [-Wformat-overflow=] 2007 | if (*nameform==0) sprintf(nameform, "%%%d.%ds ",namewidth,namewidth); | ^~ ureadseq.c:2007:39: note: directive argument in the range [-32768, 32767] 2007 | if (*nameform==0) sprintf(nameform, "%%%d.%ds ",namewidth,namewidth); | ^~~~~~~~~~~ ureadseq.c:2007:21: note: ‘sprintf’ output between 7 and 17 bytes into a destination of size 10 2007 | if (*nameform==0) sprintf(nameform, "%%%d.%ds ",namewidth,namewidth); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ureadasn.c: In function ‘listASNSeqs’: ureadasn.c:189:24: warning: passing argument 1 of ‘AsnIoOpen’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 189 | if ((aip = AsnIoOpen(filename, inIsBinary?"rb":"r")) == NULL) goto errxit; | ^~~~~~~~ In file included from /usr/include/ncbi/ncbi.h:57, from ureadasn.c:13: /usr/include/ncbi/asn.h:384:54: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘const char *’ 384 | NLM_EXTERN AsnIoPtr LIBCALL AsnIoOpen PROTO((CharPtr file_name, CharPtr mode)); /usr/include/ncbi/ncbilcl.h:192:18: note: in definition of macro ‘PROTO’ 192 | #define PROTO(x) x /* Prototypes are acceptable */ | ^ ureadasn.c: In function ‘readASNSeq’: ureadasn.c:261:24: warning: passing argument 1 of ‘AsnIoOpen’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 261 | if ((aip = AsnIoOpen(filename, inIsBinary?"rb":"r")) == NULL) goto errxit; | ^~~~~~~~ /usr/include/ncbi/asn.h:384:54: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘const char *’ 384 | NLM_EXTERN AsnIoPtr LIBCALL AsnIoOpen PROTO((CharPtr file_name, CharPtr mode)); /usr/include/ncbi/ncbilcl.h:192:18: note: in definition of macro ‘PROTO’ 192 | #define PROTO(x) x /* Prototypes are acceptable */ | ^ ureadasn.c:262:31: warning: ‘fgets’ writing 255 bytes into a region of size 200 overflows the destination [-Wstringop-overflow=] 262 | for (i=0; ifp); /* this may mess up asn routines... */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ureadasn.c:241:15: note: destination object ‘stemp’ of size 200 241 | char *seq, stemp[200]; | ^~~~~ In file included from ureadasn.c:8: /usr/powerpc64le-linux-gnu/include/stdio.h:654:14: note: in a call to function ‘fgets’ declared with attribute ‘access (write_only, 1, 2)’ 654 | extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) | ^~~~~ /usr/lib/gcc-cross/powerpc64le-linux-gnu/14/../../../../powerpc64le-linux-gnu/bin/ld: /tmp/ccjvKkMn.o: in function `Nlm_Main': ./readseq.c:783:(.text+0x2170): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_installdirs -a dh_auto_install --destdir=debian/readseq/ -a make -j1 install DESTDIR=/<>/debian/readseq AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' install readseq /<>/debian/readseq/usr/bin install *.std /<>/debian/readseq/usr/share/doc/readseq/tests install Makefile /<>/debian/readseq/usr/share/doc/readseq/tests make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'readseq' in '../readseq_1-15_ppc64el.deb'. dpkg-deb: building package 'readseq-dbgsym' in '../readseq-dbgsym_1-15_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../readseq_1-15_ppc64el.buildinfo dpkg-genchanges --build=any -O../readseq_1-15_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-10-15T04:57:58Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ readseq_1-15_ppc64el.changes: ----------------------------- Format: 1.8 Date: Thu, 14 Mar 2024 22:07:41 +0100 Source: readseq Binary: readseq readseq-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 1-15 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: readseq - Conversion between sequence formats Closes: 1066478 Changes: readseq (1-15) unstable; urgency=medium . * Team upload. * fix-gets.patch: new: replace gets by fgets. (Closes: #1066478) * Remove unnecessary get-orig-source-target. * Update standards version to 4.6.2, no changes needed. Checksums-Sha1: e29654d4cff92a44eb51cfeaf67e2210de913714 68288 readseq-dbgsym_1-15_ppc64el.deb cd8e98c1dd44bc8ecf7bfbb8304c8f2eea32ae07 5110 readseq_1-15_ppc64el.buildinfo 636150650353ae2b1cad2adc4eb4674009dd62e7 58092 readseq_1-15_ppc64el.deb Checksums-Sha256: 2c742929b54e54cbef7ffae97476fa8867be7af86436bf624c630687d601053d 68288 readseq-dbgsym_1-15_ppc64el.deb 909c0cea2e7db8d4d44ac9aacfae840f761f3bacb478060dcbf95cbf46f43fb0 5110 readseq_1-15_ppc64el.buildinfo 09ed9481e206ecb1a57983901633b3994ba9d72c5ee7a9af1b40e2d6016794e1 58092 readseq_1-15_ppc64el.deb Files: 1e81a8a870e4d75da19e5f9f7ac8426e 68288 debug optional readseq-dbgsym_1-15_ppc64el.deb 94901f8d44628854c39e5e2b8bfddd63 5110 science optional readseq_1-15_ppc64el.buildinfo 9a87cadc2c5dd366f12d63871b7de1d0 58092 science optional readseq_1-15_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: readseq Binary: readseq readseq-dbgsym Architecture: ppc64el Version: 1-15 Checksums-Md5: 1e81a8a870e4d75da19e5f9f7ac8426e 68288 readseq-dbgsym_1-15_ppc64el.deb 9a87cadc2c5dd366f12d63871b7de1d0 58092 readseq_1-15_ppc64el.deb Checksums-Sha1: e29654d4cff92a44eb51cfeaf67e2210de913714 68288 readseq-dbgsym_1-15_ppc64el.deb 636150650353ae2b1cad2adc4eb4674009dd62e7 58092 readseq_1-15_ppc64el.deb Checksums-Sha256: 2c742929b54e54cbef7ffae97476fa8867be7af86436bf624c630687d601053d 68288 readseq-dbgsym_1-15_ppc64el.deb 09ed9481e206ecb1a57983901633b3994ba9d72c5ee7a9af1b40e2d6016794e1 58092 readseq_1-15_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 15 Oct 2024 04:57:58 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-5), binutils-common (= 2.43.1-5), binutils-x86-64-linux-gnu (= 2.43.1-5), bsdextrautils (= 2.40.2-9), bsdutils (= 1:2.40.2-9), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-6), cpp-14-x86-64-linux-gnu (= 14.2.0-6), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-6), g++-14-x86-64-linux-gnu (= 14.2.0-6), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-6), gcc-14-base (= 14.2.0-6), gcc-14-x86-64-linux-gnu (= 14.2.0-6), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.25), init-system-helpers (= 1.67), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-6), libatomic1 (= 14.2.0-6), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-5), libblkid1 (= 2.40.2-9), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-3), libc-dev-bin (= 2.40-3), libc6 (= 2.40-3), libc6-dev (= 2.40-3), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-6), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-5), libctf0 (= 2.43.1-5), libdb5.3t64 (= 5.3.28+dfsg2-8), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-14-dev (= 14.2.0-6), libgcc-s1 (= 14.2.0-6), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.6-2), libgomp1 (= 14.2.0-6), libgprofng0 (= 2.43.1-5), libhogweed6t64 (= 3.10-1), libhwasan0 (= 14.2.0-6), libicu72 (= 72.1-5), libidn2-0 (= 2.3.7-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-6), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-6), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-9), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncbi6-dev (= 6.1.20170106+dfsg2-4), libncbi6t64 (= 6.1.20170106+dfsg2-4), libnettle8t64 (= 3.10-1), libp11-kit0 (= 0.25.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-6), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-6), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-5), libsmartcols1 (= 2.40.2-9), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-6), libstdc++6 (= 14.2.0-6), libsystemd0 (= 256.7-1), libtasn1-6 (= 4.19.0-3+b2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-6), libubsan1 (= 14.2.0-6), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.7-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-9), libxml2 (= 2.12.7+dfsg+really2.9.14-0.1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.11.2-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncbi-data (= 6.1.20170106+dfsg2-4), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-6), perl-base (= 5.40.0-6), perl-modules-5.40 (= 5.40.0-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-9), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1710450461" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ readseq-dbgsym_1-15_ppc64el.deb ------------------------------- new Debian package, version 2.0. size 68288 bytes: control archive=532 bytes. 365 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: readseq-dbgsym Source: readseq Version: 1-15 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 88 Depends: readseq (= 1-15) Section: debug Priority: optional Description: debug symbols for readseq Build-Ids: bef67405e24623e02705128b1b7c803c1f05ebb6 drwxr-xr-x root/root 0 2024-03-14 21:07 ./ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/lib/debug/.build-id/be/ -rw-r--r-- root/root 78920 2024-03-14 21:07 ./usr/lib/debug/.build-id/be/f67405e24623e02705128b1b7c803c1f05ebb6.debug drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/share/ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-14 21:07 ./usr/share/doc/readseq-dbgsym -> readseq readseq_1-15_ppc64el.deb ------------------------ new Debian package, version 2.0. size 58092 bytes: control archive=1072 bytes. 575 bytes, 14 lines control 1030 bytes, 15 lines md5sums Package: readseq Version: 1-15 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 184 Depends: libc6 (>= 2.34), libncbi6t64 (>= 6.1.20030421) Section: science Priority: optional Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/ Description: Conversion between sequence formats Reads and writes nucleic/protein sequences in various formats. Data files may have multiple sequences. Readseq is particularly useful as it automatically detects many sequence formats, and converts between them. drwxr-xr-x root/root 0 2024-03-14 21:07 ./ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/bin/ -rwxr-xr-x root/root 133448 2024-03-14 21:07 ./usr/bin/readseq drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/share/ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/share/doc/readseq/ -rw-r--r-- root/root 13869 2024-03-14 21:07 ./usr/share/doc/readseq/Formats.gz -rw-r--r-- root/root 2018 2024-03-14 21:07 ./usr/share/doc/readseq/README.Debian -rw-r--r-- root/root 323 2024-03-14 21:07 ./usr/share/doc/readseq/README.test -rw-r--r-- root/root 2923 1993-02-01 00:00 ./usr/share/doc/readseq/Readme.gz -rw-r--r-- root/root 4138 1992-12-30 00:00 ./usr/share/doc/readseq/Readseq.help.gz -rw-r--r-- root/root 3731 1992-12-30 00:00 ./usr/share/doc/readseq/Stdfiles -rw-r--r-- root/root 704 2024-03-14 21:07 ./usr/share/doc/readseq/changelog.Debian.gz -rw-r--r-- root/root 996 2024-03-14 21:07 ./usr/share/doc/readseq/copyright drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/share/doc/readseq/tests/ -rw-r--r-- root/root 2278 2024-03-14 21:07 ./usr/share/doc/readseq/tests/Makefile -rw-r--r-- root/root 135 2024-03-14 21:07 ./usr/share/doc/readseq/tests/alphabet.std -rw-r--r-- root/root 1180 1992-12-30 00:00 ./usr/share/doc/readseq/tests/multi.std -rw-r--r-- root/root 253 1992-12-30 00:00 ./usr/share/doc/readseq/tests/nucleic.std -rw-r--r-- root/root 131 1992-12-30 00:00 ./usr/share/doc/readseq/tests/upper.std drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/share/man/man1/ -rw-r--r-- root/root 2003 2024-03-14 21:07 ./usr/share/man/man1/readseq.1.gz drwxr-xr-x root/root 0 2024-03-14 21:07 ./usr/share/readseq/ lrwxrwxrwx root/root 0 2024-03-14 21:07 ./usr/share/readseq/readseq_help.gz -> ../doc/readseq/Readseq.help.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1318 B] Get:5 copy:/<>/apt_archive ./ Packages [1401 B] Fetched 3334 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: libnetaddr-ip-perl : Depends: perlapi-5.38.2 but it is not installable libsyntax-keyword-try-perl : Depends: perlapi-5.38.2 but it is not installable libsereal-encoder-perl : Depends: perlapi-5.38.2 but it is not installable libtext-xslate-perl : Depends: perlapi-5.38.2 but it is not installable Depends: libdata-messagepack-perl but it is not going to be installed Depends: libmouse-perl but it is not going to be installed libparams-classify-perl : Depends: libdevel-callchecker-perl but it is not going to be installed Depends: perlapi-5.38.2 but it is not installable libhtml-parser-perl : Depends: perlapi-5.38.2 but it is not installable libberkeleydb-perl : Depends: perlapi-5.38.2 but it is not installable libunicode-utf8-perl : Depends: perlapi-5.38.2 but it is not installable libparams-util-perl : Depends: perlapi-5.38.2 but it is not installable libtime-moment-perl : Depends: perlapi-5.38.2 but it is not installable libclone-perl : Depends: perlapi-5.38.2 but it is not installable libcpanel-json-xs-perl : Depends: perlapi-5.38.2 but it is not installable Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:ppc64el : Depends: lintian:amd64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1472 Build-Time: 4 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 12 Job: readseq_1-15 Lintian: error Machine Architecture: amd64 Package: readseq Package-Time: 26 Source-Version: 1-15 Space: 1472 Status: successful Version: 1-15 -------------------------------------------------------------------------------- Finished at 2024-10-15T04:57:58Z Build needed 00:00:26, 1472k disk space