sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | repeatmasker-recon 1.08-4 (armel) Wed, 22 Jan 2020 00:59:58 +0000 | +==============================================================================+ Package: repeatmasker-recon Version: 1.08-4 Source Version: 1.08-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-1d8a2a5e-2967-4ab0-bcaf-91e3e96557a2' with '<>' I: NOTICE: Log filtering will replace 'build/repeatmasker-recon-GGiHTm/resolver-0egXat' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-01-21-0218.11.pdiff [7621 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-01-21-0825.03.pdiff [4084 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-01-21-1413.42.pdiff [9607 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2020-01-21-2027.06.pdiff [11.6 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2020-01-21-2027.06.pdiff [11.6 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-01-21-0218.11.pdiff [16.0 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-01-21-0825.03.pdiff [4170 B] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-01-21-1413.42.pdiff [6560 B] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-01-21-2027.06.pdiff [5557 B] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-01-21-2027.06.pdiff [5557 B] Get:12 http://debian.oregonstate.edu/debian unstable/main armel Packages [7898 kB] Fetched 8162 kB in 3s (2571 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'repeatmasker-recon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/repeatmasker-recon.git Please use: git clone https://salsa.debian.org/med-team/repeatmasker-recon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 116 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main repeatmasker-recon 1.08-4 (dsc) [2075 B] Get:2 http://debian.oregonstate.edu/debian unstable/main repeatmasker-recon 1.08-4 (tar) [108 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main repeatmasker-recon 1.08-4 (diff) [4972 B] Fetched 116 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/repeatmasker-recon-GGiHTm/repeatmasker-recon-1.08' with '<>' I: NOTICE: Log filtering will replace 'build/repeatmasker-recon-GGiHTm' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper (>= 11~), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [498 B] Fetched 1863 B in 0s (88.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils build-essential cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel glibc-doc manpages-dev:armel libstdc++-9-doc libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils build-essential cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armel sensible-utils ucf 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 77.1 MB of archives. After this operation, 313 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.2.1-24 [195 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.33.50.20200115-2 [2748 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.10-10 [104 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-9 [2636 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-24 [1677 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-24 [10.7 MB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.2.1-21cross1 [195 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.2.1-21cross1 [6813 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.29-9cross1 [1128 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.2.1-21cross1 [39.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.2.1-21cross1 [75.1 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.2.1-21cross1 [8880 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.2.1-21cross1 [341 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.2.1-21cross1 [376 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.2.1-21cross1 [110 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.2.1-21cross1 [644 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.2.1-21cross1 [7157 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.4.8-1cross1 [1128 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.29-9cross1 [2141 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.2.1-21cross1 [1709 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.2.1-21cross1 [7392 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.8 [176 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.4-1+b1 [1319 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.8 [1019 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.12 [180 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.2.1-24 [39.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.10-10 [100 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.29-9 [2335 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.2.1-24 [347 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.2.1-24 [9092 B] Get:86 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.4.13-1 [1040 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libcrypt-dev armel 1:4.4.10-10 [120 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.29-9 [2182 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.2.1-24 [77.1 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.2.1-24 [415 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.2.1-24 [111 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.2.1-24 [643 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.2.1-24 [1709 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 77.1 MB in 1s (64.9 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12779 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... 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Preparing to unpack .../91-libstdc++-9-dev_9.2.1-24_armel.deb ... Unpacking libstdc++-9-dev:armel (9.2.1-24) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../92-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000002-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-arm-linux-gnueabi (2.33.50.20200115-2) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-1+b1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.8) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up linux-libc-dev:armel (5.4.13-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up linux-libc-dev-armel-cross (5.4.8-1cross1) ... Setting up gcc-9-arm-linux-gnueabi-base:amd64 (9.2.1-21cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up cpp-9-arm-linux-gnueabi (9.2.1-21cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.2.1-21cross1) ... Setting up libc6-armel-cross (2.29-9cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.29-9) ... Setting up libc6-dev-armel-cross (2.29-9cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:armel (9.2.1-24) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libgomp1-armel-cross (9.2.1-21cross1) ... Setting up libstdc++-9-dev:amd64 (9.2.1-24) ... Setting up libtool (2.4.6-11) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-armel-cross (9.2.1-21cross1) ... Setting up help2man (1.47.12) ... Setting up libgcc1-armel-cross (1:9.2.1-21cross1) ... Setting up libasan5-armel-cross (9.2.1-21cross1) ... Setting up cpp-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-24) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libstdc++6-armel-cross (9.2.1-21cross1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libubsan1-armel-cross (9.2.1-21cross1) ... Setting up libgcc-9-dev-armel-cross (9.2.1-21cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-armel-cross (9.2.1-21cross1) ... Setting up gcc-9-arm-linux-gnueabi (9.2.1-21cross1) ... Setting up g++-9-arm-linux-gnueabi (9.2.1-21cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.8) ... Setting up libgcc1:armel (1:9.2.1-24) ... Setting up libcrypt1:armel (1:4.4.10-10) ... Setting up libc6:armel (2.29-9) ... Setting up libcrypt-dev:armel (1:4.4.10-10) ... Setting up libc6-dev:armel (2.29-9) ... Setting up libstdc++6:armel (9.2.1-24) ... Setting up libgomp1:armel (9.2.1-24) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armel (9.2.1-24) ... Setting up libatomic1:armel (9.2.1-24) ... Setting up libubsan1:armel (9.2.1-24) ... Setting up debhelper (12.8) ... Setting up libgcc-9-dev:armel (9.2.1-24) ... Setting up libstdc++-9-dev:armel (9.2.1-24) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.29-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.50.20200115-2 dpkg-dev_1.19.7 g++-9_9.2.1-24 gcc-8_8.3.0-26 gcc-9_9.2.1-24 libc6-dev_2.29-9 libstdc++-9-dev_9.2.1-24 libstdc++-9-dev-armel-cross_9.2.1-21cross1 libstdc++6_9.2.1-24 libstdc++6-armel-cross_9.2.1-21cross1 linux-libc-dev_5.4.13-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.50.20200115-2 binutils-arm-linux-gnueabi_2.33.50.20200115-2 binutils-common_2.33.50.20200115-2 binutils-x86-64-linux-gnu_2.33.50.20200115-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-26 cpp-9_9.2.1-24 cpp-9-arm-linux-gnueabi_9.2.1-21cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armel_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.8 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-24 g++-9-arm-linux-gnueabi_9.2.1-21cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-26 gcc-8-base_8.3.0-26 gcc-9_9.2.1-24 gcc-9-arm-linux-gnueabi_9.2.1-21cross1 gcc-9-arm-linux-gnueabi-base_9.2.1-21cross1 gcc-9-base_9.2.1-24 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libdebconfclient0_0.250 libdebhelper-perl_12.8 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-26 libgcc-9-dev_9.2.1-24 libgcc-9-dev-armel-cross_9.2.1-21cross1 libgcc1_1:9.2.1-24 libgcc1-armel-cross_1:9.2.1-21cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-1+b1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-24 libgomp1-armel-cross_9.2.1-21cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_9.2.1-24 liblocale-gettext-perl_1.07-4 liblsan0_9.2.1-24 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-26 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.18.1-2+b1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libquadmath0_9.2.1-24 libseccomp2_2.4.2-2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libstdc++-9-dev_9.2.1-24 libstdc++-9-dev-armel-cross_9.2.1-21cross1 libstdc++6_9.2.1-24 libstdc++6-armel-cross_9.2.1-21cross1 libsub-override-perl_0.09-2 libsystemd0_244-3 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-24 libubsan1_9.2.1-24 libubsan1-armel-cross_9.2.1-21cross1 libuchardet0_0.0.6-3 libudev1_244-3 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-8 libyaml-perl_1.29-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.13-1 linux-libc-dev-armel-cross_5.4.8-1cross1 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-20 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: repeatmasker-recon Binary: repeatmasker-recon Architecture: any Version: 1.08-4 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://www.repeatmasker.org/ Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/repeatmasker-recon Vcs-Git: https://salsa.debian.org/med-team/repeatmasker-recon.git Build-Depends: debhelper (>= 11~), help2man Package-List: repeatmasker-recon deb science optional arch=any Checksums-Sha1: a91b9f54dc277248c6848c2584531f7538bec3b4 108477 repeatmasker-recon_1.08.orig.tar.gz b6cf7b125d375fcdeae38c881f6a981543f86b3a 4972 repeatmasker-recon_1.08-4.debian.tar.xz Checksums-Sha256: 699765fa49d18dbfac9f7a82ecd054464b468cb7521abe9c2bd8caccf08ee7d8 108477 repeatmasker-recon_1.08.orig.tar.gz 9ddc5aa66a0fceaf5289ac51576ff11c24b5635ec5737b5fe4a6c9d725a34198 4972 repeatmasker-recon_1.08-4.debian.tar.xz Files: 48c5c650a312bc1cc3fdddcfd943deb0 108477 repeatmasker-recon_1.08.orig.tar.gz 71629434246e011e60d02096b2a1adb1 4972 repeatmasker-recon_1.08-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAltEsTgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHAJA//bArzphA2SVL3WON5Ra7cOxGpnzLog6+6 SXLK1xNepBE4WGX+nZR5qxmkZ8lBXcFufhB49BK7Pge2LiuHykKT6etVeC/jE7Xo JwWeZ8rsK0RLQgS3AcfrVJ94GkZMuFG7mzw2+CybQVLmhri+JabkV8mFmBfSsDUf ip8mVKDEqOAHRsRhpxoMn4MrAxTJgNmXc6T9cSUoQvJPEJ8iMsVxqNgbImWBwV10 NGva7MlLjDMZfCAh2H3tQpepvDQXB95x7mCxXHtNEg7nah1/VjnxLucqE90dvmr0 lL74mNu1ZbNvgqvr33N2Y5+ilaseblreZc0PyZhSinQNOvv8fOC2ziHYmMdQCdOL hqCm1YvdalrxhdcFvo7m3freRM0qsenqCeM9IiufLzcZsTQdtegxFLIrtxv64RvU fIAY4M1YQzvbDcqFo34ytCb8dkhGx+UCesCw+siqePzq9Hy3sWCkBnGpIt5+3RZG 1dWTCyHiRdzLa4H+Y620ervoCLfNurI+iDQJc47t5rbN0DIOET2S0i2b3+gMchUC bJJ2MOEhB8NI6JVLVhb7HzM4fVOpC/K0NbsbuSoEWXvHY/BYaiQmJle/E5R4uvhN hgfSRmVDdSPunrVbWhm8uQV/1jw+FOJgB4NtvViYj46vg19XVWPLWSESIeYaxA0P OFYri/hKxus= =WwDg -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jul 10 13:14:32 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./repeatmasker-recon_1.08-4.dsc dpkg-source: info: extracting repeatmasker-recon in /<> dpkg-source: info: unpacking repeatmasker-recon_1.08.orig.tar.gz dpkg-source: info: unpacking repeatmasker-recon_1.08-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-udpate-paths.patch dpkg-source: info: applying 0002-fix_binary_name.patch dpkg-source: info: applying 0003-hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-1d8a2a5e-2967-4ab0-bcaf-91e3e96557a2 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package repeatmasker-recon dpkg-buildpackage: info: source version 1.08-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' cd src; make clean make[2]: Entering directory '/<>/src' rm -f imagespread eledef eleredef edgeredef famdef *.o *~ *.Addrs *.Counts *.pixie Makefile.bak core imagespread eledef eleredef edgeredef famdef TAGS make[2]: Leaving directory '/<>/src' rm -rf bin dh_clean make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' cd src; make make[2]: Entering directory '/<>/src' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now imagespread.c -o imagespread In file included from msps.h:4, from imagespread.c:2: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:9: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ In file included from imagespread.c:2: msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d In file included from msps.h:4, from imagespread.c:2: seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eledef.c -o eledef In file included from msps.h:4, from eledef.c:1: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:9: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ In file included from eledef.c:1: msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d In file included from msps.h:4, from eledef.c:1: seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c: In function ‘main’: eledef.c:95:6: warning: ignoring return value of ‘freopen’, declared with attribute warn_unused_result [-Wunused-result] 95 | freopen(ele_name, "w", all_ele);\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c:246:7: note: in expansion of macro ‘DUMBBELL’ 246 | DUMBBELL; | ^~~~~~~~ eledef.c:95:6: warning: ignoring return value of ‘freopen’, declared with attribute warn_unused_result [-Wunused-result] 95 | freopen(ele_name, "w", all_ele);\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c:253:5: note: in expansion of macro ‘DUMBBELL’ 253 | DUMBBELL; | ^~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eleredef.c -o eleredef In file included from msps.h:4, from ele.h:1, from eleredef.c:5: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:9: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ In file included from ele.h:1, from eleredef.c:5: msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d eleredef.c: In function ‘main’: eleredef.c:239:70: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 239 | printf("eleredef: Error! Could not allocate memory for img_ptr: %d bytes requested\n", ( MAX_IMG*sizeof(IMAGE_t *) ) ); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld In file included from msps.h:4, from ele.h:1, from eleredef.c:5: seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now edgeredef.c -o edgeredef In file included from msps.h:4, from ele.h:1, from edgeredef.c:1: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:9: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ In file included from ele.h:1, from edgeredef.c:1: msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d In file included from msps.h:4, from ele.h:1, from edgeredef.c:1: seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ edgeredef.c: In function ‘general_edge_redef’: edgeredef.c:200:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] 200 | system(command); | ^~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now famdef.c -o famdef In file included from msps.h:4, from ele.h:1, from famdef.c:1: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:9: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ In file included from ele.h:1, from famdef.c:1: msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d In file included from msps.h:4, from ele.h:1, from famdef.c:1: seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' mkdir -p bin cd src; make install make[2]: Entering directory '/<>/src' cp imagespread eledef eleredef edgeredef famdef ../bin/ make[2]: Leaving directory '/<>/src' dh_install cp scripts/recon.pl debian/repeatmasker-recon/usr/bin/repeatmasker-recon cp scripts/MSPCollect.pl debian/repeatmasker-recon/usr/bin/MSPCollect make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a arm-linux-gnueabi-objcopy: debian/repeatmasker-recon/usr/bin/imagespread: file format not recognized dh_strip: error: arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/repeatmasker-recon/usr/bin/imagespread debian/.debhelper/repeatmasker-recon/dbgsym-root/usr/lib/debug/.build-id/19/f9d4edfe3752e5f65b6cfc96bb12b73833a274.debug returned exit code 1 dh_strip: error: Aborting due to earlier error make: *** [debian/rules:20: binary-arch] Error 25 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-01-22T01:00:41Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 2220 Build-Time: 12 Distribution: unstable Fail-Stage: build Foreign Architectures: armel Host Architecture: armel Install-Time: 19 Job: repeatmasker-recon_1.08-4 Machine Architecture: amd64 Package: repeatmasker-recon Package-Time: 43 Source-Version: 1.08-4 Space: 2220 Status: attempted Version: 1.08-4 -------------------------------------------------------------------------------- Finished at 2020-01-22T01:00:41Z Build needed 00:00:43, 2220k disk space