sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | repeatmasker-recon 1.08-4 (mipsel) Thu, 13 Jun 2019 03:53:22 +0000 | +==============================================================================+ Package: repeatmasker-recon Version: 1.08-4 Source Version: 1.08-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-143e4a1f-b4d8-4218-a265-f54673793210' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [210 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-12-0814.19.pdiff [1084 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-12-1419.15.pdiff [1681 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-12-2019.45.pdiff [4973 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-13-0212.23.pdiff [1655 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-13-0212.23.pdiff [1655 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-12-0814.19.pdiff [306 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-12-1419.15.pdiff [1540 B] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-12-2019.45.pdiff [4061 B] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-13-0212.23.pdiff [20.4 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-13-0212.23.pdiff [20.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8027 kB] Fetched 8329 kB in 3s (2923 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgnutls30 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1123 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libgnutls30 amd64 3.6.7-4 [1123 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1123 kB in 0s (36.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11954 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4) over (3.6.7-3) ... Setting up libgnutls30:amd64 (3.6.7-4) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'repeatmasker-recon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/repeatmasker-recon.git Please use: git clone https://salsa.debian.org/med-team/repeatmasker-recon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 116 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main repeatmasker-recon 1.08-4 (dsc) [2075 B] Get:2 http://debian.oregonstate.edu/debian unstable/main repeatmasker-recon 1.08-4 (tar) [108 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main repeatmasker-recon 1.08-4 (diff) [4972 B] Fetched 116 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/repeatmasker-recon-aCeAtL/repeatmasker-recon-1.08' with '<>' I: NOTICE: Log filtering will replace 'build/repeatmasker-recon-aCeAtL' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Pq3FZP/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Pq3FZP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Pq3FZP/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Pq3FZP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Pq3FZP/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-Pq3FZP/apt_archive ./ Packages [451 B] Fetched 1771 B in 0s (88.2 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mipsel-linux-gnu gcc-8-doc libstdc++6-8-dbg-mipsel-cross gcc-8-multilib-mipsel-linux-gnu libgcc1-dbg-mipsel-cross libgomp1-dbg-mipsel-cross libitm1-dbg-mipsel-cross libatomic1-dbg-mipsel-cross libasan5-dbg-mipsel-cross liblsan0-dbg-mipsel-cross libtsan0-dbg-mipsel-cross libubsan1-dbg-mipsel-cross libmpx2-dbg-mipsel-cross libquadmath0-dbg-mipsel-cross manpages-dev autoconf automake libtool flex bison gdb-mipsel-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sbuild-build-depends-core-dummy:mipsel sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 146 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Pq3FZP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.31.1-16 [2487 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu-base amd64 8.3.0-7cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6278 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.28-10cross2 [1229 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mipsel-cross all 1:8.3.0-7cross1 [46.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 8.3.0-7cross1 [69.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 8.3.0-7cross1 [6692 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mipsel-cross all 8.3.0-7cross1 [211 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6691 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:8.3.0-1 [1452 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 8.3.0-7cross1 [311 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 4.19.28-2cross2 [1240 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.28-10cross2 [2320 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mipsel-cross all 8.3.0-7cross1 [1535 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6853 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:8.3.0-1 [1172 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.6 [6564 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 1s (63.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11954 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-mipsel-linux-gnu. Preparing to unpack .../06-binutils-mipsel-linux-gnu_2.31.1-16_amd64.deb ... Unpacking binutils-mipsel-linux-gnu (2.31.1-16) ... Selecting previously unselected package gcc-8-mipsel-linux-gnu-base:amd64. Preparing to unpack .../07-gcc-8-mipsel-linux-gnu-base_8.3.0-7cross1_amd64.deb ... Unpacking gcc-8-mipsel-linux-gnu-base:amd64 (8.3.0-7cross1) ... Selecting previously unselected package cpp-8-mipsel-linux-gnu. Preparing to unpack .../08-cpp-8-mipsel-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking cpp-8-mipsel-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package cpp-mipsel-linux-gnu. Preparing to unpack .../09-cpp-mipsel-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking cpp-mipsel-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... 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Selecting previously unselected package libgcc-8-dev-mipsel-cross. Preparing to unpack .../16-libgcc-8-dev-mipsel-cross_8.3.0-7cross1_all.deb ... Unpacking libgcc-8-dev-mipsel-cross (8.3.0-7cross1) ... Selecting previously unselected package gcc-8-mipsel-linux-gnu. Preparing to unpack .../17-gcc-8-mipsel-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking gcc-8-mipsel-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package gcc-mipsel-linux-gnu. Preparing to unpack .../18-gcc-mipsel-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking gcc-mipsel-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package libstdc++6-mipsel-cross. Preparing to unpack .../19-libstdc++6-mipsel-cross_8.3.0-7cross1_all.deb ... Unpacking libstdc++6-mipsel-cross (8.3.0-7cross1) ... Selecting previously unselected package linux-libc-dev-mipsel-cross. Preparing to unpack .../20-linux-libc-dev-mipsel-cross_4.19.28-2cross2_all.deb ... Unpacking linux-libc-dev-mipsel-cross (4.19.28-2cross2) ... Selecting previously unselected package libc6-dev-mipsel-cross. Preparing to unpack .../21-libc6-dev-mipsel-cross_2.28-10cross2_all.deb ... Unpacking libc6-dev-mipsel-cross (2.28-10cross2) ... Selecting previously unselected package libstdc++-8-dev-mipsel-cross. Preparing to unpack .../22-libstdc++-8-dev-mipsel-cross_8.3.0-7cross1_all.deb ... Unpacking libstdc++-8-dev-mipsel-cross (8.3.0-7cross1) ... Selecting previously unselected package g++-8-mipsel-linux-gnu. Preparing to unpack .../23-g++-8-mipsel-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking g++-8-mipsel-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package g++-mipsel-linux-gnu. Preparing to unpack .../24-g++-mipsel-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking g++-mipsel-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../25-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... 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Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../32-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../33-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../34-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../35-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../36-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../37-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../38-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../39-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-mipsel. Preparing to unpack .../40-crossbuild-essential-mipsel_12.6_all.deb ... Unpacking crossbuild-essential-mipsel (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:mipsel. Preparing to unpack .../41-sbuild-build-depends-core-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-7cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libc6-mipsel-cross (2.28-10cross2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libatomic1-mipsel-cross (8.3.0-7cross1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up libgcc1-mipsel-cross (1:8.3.0-7cross1) ... Setting up binutils-mipsel-linux-gnu (2.31.1-16) ... Setting up libgomp1-mipsel-cross (8.3.0-7cross1) ... Setting up gcc-8-mipsel-linux-gnu-base:amd64 (8.3.0-7cross1) ... Setting up linux-libc-dev-mipsel-cross (4.19.28-2cross2) ... Setting up sensible-utils (0.0.12) ... Setting up cpp-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc-8-dev-mipsel-cross (8.3.0-7cross1) ... Setting up libc6-dev-mipsel-cross (2.28-10cross2) ... Setting up libstdc++6-mipsel-cross (8.3.0-7cross1) ... Setting up cpp-mipsel-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++-8-dev-mipsel-cross (8.3.0-7cross1) ... Setting up gcc-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up g++-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.6) ... Setting up sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-Pq3FZP/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Pq3FZP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Pq3FZP/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Pq3FZP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Pq3FZP/apt_archive ./ Sources [482 B] Get:5 copy:/<>/resolver-Pq3FZP/apt_archive ./ Packages [571 B] Fetched 2016 B in 0s (107 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mipsel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Pq3FZP/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mipsel. (Reading database ... 15128 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), help2man Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), help2man dpkg-deb: building package 'sbuild-build-depends-repeatmasker-recon-dummy' in '/<>/resolver-Pq3FZP/apt_archive/sbuild-build-depends-repeatmasker-recon-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-repeatmasker-recon-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-Pq3FZP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Pq3FZP/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Pq3FZP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Pq3FZP/apt_archive ./ Sources [646 B] Get:5 copy:/<>/resolver-Pq3FZP/apt_archive ./ Packages [731 B] Fetched 2340 B in 0s (111 kB/s) Reading package lists... Reading package lists... Install repeatmasker-recon build dependencies (apt-based resolver) ------------------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 linux-libc-dev:mipsel m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel manpages-dev:mipsel libstdc++-8-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 linux-libc-dev:mipsel m4 man-db po-debconf sbuild-build-depends-repeatmasker-recon-dummy:mipsel 0 upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 18.1 MB of archives. After this operation, 80.2 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Pq3FZP/apt_archive ./ sbuild-build-depends-repeatmasker-recon-dummy 0.invalid.0 [888 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-2 [1259 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-8-base mipsel 8.3.0-7 [191 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.10 [180 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc1 mipsel 1:8.3.0-7 [45.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.28-10 [2429 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 8.3.0-7 [6692 B] Get:34 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 4.19.37-3 [1178 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.28-10 [2322 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 8.3.0-7 [70.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-8-dev mipsel 8.3.0-7 [210 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 8.3.0-7 [349 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-8-dev mipsel 8.3.0-7 [1552 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.1 MB in 0s (50.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15128 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../21-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../22-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package gcc-8-base:mipsel. Preparing to unpack .../27-gcc-8-base_8.3.0-7_mipsel.deb ... Unpacking gcc-8-base:mipsel (8.3.0-7) ... Selecting previously unselected package help2man. Preparing to unpack .../28-help2man_1.47.10_amd64.deb ... Unpacking help2man (1.47.10) ... Selecting previously unselected package libgcc1:mipsel. Preparing to unpack .../29-libgcc1_1%3a8.3.0-7_mipsel.deb ... Unpacking libgcc1:mipsel (1:8.3.0-7) ... Selecting previously unselected package libc6:mipsel. Preparing to unpack .../30-libc6_2.28-10_mipsel.deb ... Unpacking libc6:mipsel (2.28-10) ... Selecting previously unselected package libatomic1:mipsel. Preparing to unpack .../31-libatomic1_8.3.0-7_mipsel.deb ... Unpacking libatomic1:mipsel (8.3.0-7) ... Selecting previously unselected package linux-libc-dev:mipsel. Preparing to unpack .../32-linux-libc-dev_4.19.37-3_mipsel.deb ... Unpacking linux-libc-dev:mipsel (4.19.37-3) ... Selecting previously unselected package libc6-dev:mipsel. Preparing to unpack .../33-libc6-dev_2.28-10_mipsel.deb ... Unpacking libc6-dev:mipsel (2.28-10) ... Selecting previously unselected package libgomp1:mipsel. Preparing to unpack .../34-libgomp1_8.3.0-7_mipsel.deb ... Unpacking libgomp1:mipsel (8.3.0-7) ... Selecting previously unselected package libgcc-8-dev:mipsel. Preparing to unpack .../35-libgcc-8-dev_8.3.0-7_mipsel.deb ... Unpacking libgcc-8-dev:mipsel (8.3.0-7) ... Selecting previously unselected package libstdc++6:mipsel. Preparing to unpack .../36-libstdc++6_8.3.0-7_mipsel.deb ... Unpacking libstdc++6:mipsel (8.3.0-7) ... Selecting previously unselected package libstdc++-8-dev:mipsel. Preparing to unpack .../37-libstdc++-8-dev_8.3.0-7_mipsel.deb ... Unpacking libstdc++-8-dev:mipsel (8.3.0-7) ... Selecting previously unselected package sbuild-build-depends-repeatmasker-recon-dummy:mipsel. Preparing to unpack .../38-sbuild-build-depends-repeatmasker-recon-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-repeatmasker-recon-dummy:mipsel (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2) ... No schema files found: doing nothing. Setting up linux-libc-dev:mipsel (4.19.37-3) ... Setting up gettext-base (0.19.8.1-9) ... Setting up help2man (1.47.10) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mipsel (8.3.0-7) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:mipsel (2.28-10) ... Setting up libc6-dev:mipsel (2.28-10) ... Setting up libgcc1:mipsel (1:8.3.0-7) ... Setting up libgomp1:mipsel (8.3.0-7) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:mipsel (8.3.0-7) ... Setting up libgcc-8-dev:mipsel (8.3.0-7) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libstdc++6:mipsel (8.3.0-7) ... Setting up libstdc++-8-dev:mipsel (8.3.0-7) ... Setting up debhelper (12.1.1) ... Setting up sbuild-build-depends-repeatmasker-recon-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.7 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mipsel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mipsel-cross_8.3.0-7cross1 linux-libc-dev_4.19.37-3 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-common_2.31.1-16 binutils-mipsel-linux-gnu_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-mipsel-linux-gnu_8.3.0-7cross1 cpp-mipsel-linux-gnu_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-mipsel_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12-3 e2fsprogs_1.45.2-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-mipsel-linux-gnu_8.3.0-7cross1 g++-mipsel-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-8-mipsel-linux-gnu_8.3.0-7cross1 gcc-8-mipsel-linux-gnu-base_8.3.0-7cross1 gcc-mipsel-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-2 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 help2man_1.47.10 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_8.3.0-7 libatomic1_8.3.0-7 libatomic1-mipsel-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-mipsel-cross_2.28-10cross2 libc6-mipsel-cross_2.28-10cross2 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-7 libcom-err2_1.45.2-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.2-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-7 libgcc-8-dev-mipsel-cross_8.3.0-7cross1 libgcc1_1:8.3.0-7 libgcc1-mipsel-cross_1:8.3.0-7cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4 libgomp1_8.3.0-7 libgomp1-mipsel-cross_8.3.0-7cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-7 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-7 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-7 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_8.3.0-7 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.2-1 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mipsel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mipsel-cross_8.3.0-7cross1 libsystemd0_241-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libubsan1_8.3.0-7 libuchardet0_0.0.6-3 libudev1_241-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-3 linux-libc-dev-mipsel-cross_4.19.28-2cross2 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-repeatmasker-recon-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jul 10 13:14:32 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./repeatmasker-recon_1.08-4.dsc dpkg-source: info: extracting repeatmasker-recon in /<> dpkg-source: info: unpacking repeatmasker-recon_1.08.orig.tar.gz dpkg-source: info: unpacking repeatmasker-recon_1.08-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-udpate-paths.patch dpkg-source: info: applying 0002-fix_binary_name.patch dpkg-source: info: applying 0003-hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-143e4a1f-b4d8-4218-a265-f54673793210 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package repeatmasker-recon dpkg-buildpackage: info: source version 1.08-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' cd src; make clean make[2]: Entering directory '/<>/src' rm -f imagespread eledef eleredef edgeredef famdef *.o *~ *.Addrs *.Counts *.pixie Makefile.bak core imagespread eledef eleredef edgeredef famdef TAGS make[2]: Leaving directory '/<>/src' rm -rf bin dh_clean make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' cd src; make make[2]: Entering directory '/<>/src' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now imagespread.c -o imagespread In file included from msps.h:4, from imagespread.c:2: seqlist.h: In function 'GetSeqNames': seqlist.h:39:9: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (isspace(*name_start)) name_start++; ^~~~~~~ In file included from imagespread.c:2: msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~ %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d In file included from msps.h:4, from imagespread.c:2: seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 255, seq_list); ^~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eledef.c -o eledef In file included from msps.h:4, from eledef.c:1: seqlist.h: In function 'GetSeqNames': seqlist.h:39:9: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (isspace(*name_start)) name_start++; ^~~~~~~ In file included from eledef.c:1: msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~ %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d In file included from msps.h:4, from eledef.c:1: seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 255, seq_list); ^~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c: In function 'main': eledef.c:95:6: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen(ele_name, "w", all_ele);\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c:246:7: note: in expansion of macro 'DUMBBELL' DUMBBELL; ^~~~~~~~ eledef.c:95:6: warning: ignoring return value of 'freopen', declared with attribute warn_unused_result [-Wunused-result] freopen(ele_name, "w", all_ele);\ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c:253:5: note: in expansion of macro 'DUMBBELL' DUMBBELL; ^~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eleredef.c -o eleredef In file included from msps.h:4, from ele.h:1, from eleredef.c:5: seqlist.h: In function 'GetSeqNames': seqlist.h:39:9: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (isspace(*name_start)) name_start++; ^~~~~~~ In file included from ele.h:1, from eleredef.c:5: msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~ %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d eleredef.c: In function 'main': eleredef.c:239:70: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("eleredef: Error! Could not allocate memory for img_ptr: %d bytes requested\n", ( MAX_IMG*sizeof(IMAGE_t *) ) ); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %ld In file included from msps.h:4, from ele.h:1, from eleredef.c:5: seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 255, seq_list); ^~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now edgeredef.c -o edgeredef In file included from msps.h:4, from ele.h:1, from edgeredef.c:1: seqlist.h: In function 'GetSeqNames': seqlist.h:39:9: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (isspace(*name_start)) name_start++; ^~~~~~~ In file included from ele.h:1, from edgeredef.c:1: msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~ %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d In file included from msps.h:4, from ele.h:1, from edgeredef.c:1: seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 255, seq_list); ^~~~~~~~~~~~~~~~~~~~~~~~~~ edgeredef.c: In function 'general_edge_redef': edgeredef.c:200:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system(command); ^~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now famdef.c -o famdef In file included from msps.h:4, from ele.h:1, from famdef.c:1: seqlist.h: In function 'GetSeqNames': seqlist.h:39:9: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (isspace(*name_start)) name_start++; ^~~~~~~ In file included from ele.h:1, from famdef.c:1: msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~ %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { ~~^ ~~~~~~~~~~~~~~~~~~~ %d In file included from msps.h:4, from ele.h:1, from famdef.c:1: seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 255, seq_list); ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' mkdir -p bin cd src; make install make[2]: Entering directory '/<>/src' cp imagespread eledef eleredef edgeredef famdef ../bin/ make[2]: Leaving directory '/<>/src' dh_install cp scripts/recon.pl debian/repeatmasker-recon/usr/bin/repeatmasker-recon cp scripts/MSPCollect.pl debian/repeatmasker-recon/usr/bin/MSPCollect make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a mipsel-linux-gnu-objcopy: Unable to recognise the format of the input file `debian/repeatmasker-recon/usr/bin/imagespread' dh_strip: mipsel-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/repeatmasker-recon/usr/bin/imagespread debian/.debhelper/repeatmasker-recon/dbgsym-root/usr/lib/debug/.build-id/71/180981d6047645b8341263f2503262a6fb7ed9.debug returned exit code 1 dh_strip: Aborting due to earlier error make: *** [debian/rules:20: binary-arch] Error 25 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-06-13T03:54:09Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 2232 Build-Time: 11 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 24 Job: repeatmasker-recon_1.08-4 Machine Architecture: amd64 Package: repeatmasker-recon Package-Time: 47 Source-Version: 1.08-4 Space: 2232 Status: attempted Version: 1.08-4 -------------------------------------------------------------------------------- Finished at 2019-06-13T03:54:09Z Build needed 00:00:47, 2232k disk space