sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | repeatmasker-recon 1.08-7 (armhf) Sun, 26 Nov 2023 20:08:10 +0000 | +==============================================================================+ Package: repeatmasker-recon Version: 1.08-7 Source Version: 1.08-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-896a182a-199f-459b-8eb8-b2f8c206c653' with '<>' I: NOTICE: Log filtering will replace 'build/repeatmasker-recon-C02gm0/resolver-35pchw' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-11-26-1408.09-F-2023-11-26-0203.42.pdiff [34.6 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-11-26-1408.09-F-2023-11-26-0203.42.pdiff [49.1 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-11-26-1408.09-F-2023-11-26-0203.42.pdiff [34.6 kB] Get:6 http://localhost:3142/debian sid/main armhf Packages [9191 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-11-26-1408.09-F-2023-11-26-0203.42.pdiff [49.1 kB] Fetched 9599 kB in 3s (3441 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash libperl5.36 libssl3 perl perl-base perl-modules-5.36 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.4 MB of archives. After this operation, 741 kB of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:2 http://localhost:3142/debian sid/main amd64 libperl5.36 amd64 5.36.0-10 [4221 kB] Get:3 http://localhost:3142/debian sid/main amd64 perl amd64 5.36.0-10 [239 kB] Get:4 http://localhost:3142/debian sid/main amd64 perl-base amd64 5.36.0-10 [1602 kB] Get:5 http://localhost:3142/debian sid/main amd64 perl-modules-5.36 all 5.36.0-10 [2815 kB] Get:6 http://localhost:3142/debian sid/main amd64 libssl3 amd64 3.1.4-2 [2058 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.4 MB in 0s (178 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14614 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2_amd64.deb ... Unpacking bash (5.2.21-2) over (5.2.21-1) ... Setting up bash (5.2.21-2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14614 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-10_all.deb ... Unpacking perl-modules-5.36 (5.36.0-10) over (5.36.0-9) ... Preparing to unpack .../libssl3_3.1.4-2_amd64.deb ... Unpacking libssl3:amd64 (3.1.4-2) over (3.0.12-2) ... Setting up libssl3:amd64 (3.1.4-2) ... Setting up perl-modules-5.36 (5.36.0-10) ... Setting up libperl5.36:amd64 (5.36.0-10) ... Setting up perl (5.36.0-10) ... Processing triggers for libc-bin (2.37-12) ... Processing triggers for debianutils (5.14) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'repeatmasker-recon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/repeatmasker-recon.git Please use: git clone https://salsa.debian.org/med-team/repeatmasker-recon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 116 kB of source archives. Get:1 http://localhost:3142/debian sid/main repeatmasker-recon 1.08-7 (dsc) [2128 B] Get:2 http://localhost:3142/debian sid/main repeatmasker-recon 1.08-7 (tar) [108 kB] Get:3 http://localhost:3142/debian sid/main repeatmasker-recon 1.08-7 (diff) [5772 B] Fetched 116 kB in 1s (112 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/repeatmasker-recon-C02gm0/repeatmasker-recon-1.08' with '<>' I: NOTICE: Log filtering will replace 'build/repeatmasker-recon-C02gm0' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [714 B] Get:5 copy:/<>/apt_archive ./ Packages [757 B] Fetched 2080 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu72 libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:armhf libnsl2:armhf libpipeline1 libssl3:armhf libstdc++-11-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf krb5-doc:armhf krb5-user:armhf libstdc++-11-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl krb5-locales:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu72 libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:armhf libnsl2:armhf libpipeline1 libssl3:armhf libstdc++-11-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 86.7 MB of archives. After this operation, 328 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6 [15.3 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2 [42.8 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-13+b1 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.2-6 [89.1 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-1 [1402 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-13 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.41-7 [3241 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf-base amd64 13.2.0-7cross2 [41.0 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabihf amd64 13.2.0-7cross2 [9284 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:13.2.0-1 [4124 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.37-12cross1 [868 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 13.2.0-7cross2 [36.5 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 13.2.0-7cross2 [103 kB] Get:28 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 13.2.0-7cross2 [6752 B] Get:29 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 13.2.0-7cross2 [2410 kB] Get:30 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 13.2.0-7cross2 [546 kB] Get:31 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 13.2.0-7cross2 [967 kB] Get:32 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-armhf-cross all 13.2.0-7cross2 [782 kB] Get:33 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf amd64 13.2.0-7cross2 [18.2 MB] Get:34 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:13.2.0-1 [1476 B] Get:35 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armhf-cross all 6.5.8-1cross1 [1975 kB] Get:36 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.37-12cross1 [1265 kB] Get:37 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-armhf-cross all 13.2.0-7cross2 [2214 kB] Get:38 http://localhost:3142/debian sid/main amd64 g++-13-arm-linux-gnueabihf amd64 13.2.0-7cross2 [10.2 MB] Get:39 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:13.2.0-1 [1180 B] Get:40 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:41 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:42 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:49 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:50 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:51 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:52 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:54 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.10 [3484 B] Get:56 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.8 [82.1 kB] Get:57 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:58 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:59 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:60 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:61 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:62 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:63 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1 [176 kB] Get:64 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:65 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-13+b1 [1301 kB] Get:66 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:67 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:68 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.8 [956 kB] Get:69 http://localhost:3142/debian sid/main armhf gcc-11-base armhf 11.4.0-5 [40.1 kB] Get:70 http://localhost:3142/debian sid/main armhf gcc-13-base armhf 13.2.0-7 [40.8 kB] Get:71 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 13.2.0-7 [36.6 kB] Get:72 http://localhost:3142/debian sid/main armhf libc6 armhf 2.37-12 [2131 kB] Get:73 http://localhost:3142/debian sid/main armhf libasan6 armhf 11.4.0-5 [1971 kB] Get:74 http://localhost:3142/debian sid/main armhf libatomic1 armhf 13.2.0-7 [7016 B] Get:75 http://localhost:3142/debian sid/main armhf linux-libc-dev armhf 6.5.10-1 [1977 kB] Get:76 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.36-2 [95.7 kB] Get:77 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.36-2 [125 kB] Get:78 http://localhost:3142/debian sid/main armhf libkrb5support0 armhf 1.20.1-5 [30.0 kB] Get:79 http://localhost:3142/debian sid/main armhf libcom-err2 armhf 1.47.0-2+b1 [19.3 kB] Get:80 http://localhost:3142/debian sid/main armhf libk5crypto3 armhf 1.20.1-5 [74.8 kB] Get:81 http://localhost:3142/debian sid/main armhf libkeyutils1 armhf 1.6.3-2 [7832 B] Get:82 http://localhost:3142/debian sid/main armhf libssl3 armhf 3.1.4-2 [1681 kB] Get:83 http://localhost:3142/debian sid/main armhf libkrb5-3 armhf 1.20.1-5 [287 kB] Get:84 http://localhost:3142/debian sid/main armhf libgssapi-krb5-2 armhf 1.20.1-5 [111 kB] Get:85 http://localhost:3142/debian sid/main armhf libtirpc3 armhf 1.3.4+ds-1 [70.0 kB] Get:86 http://localhost:3142/debian sid/main armhf libnsl2 armhf 1.3.0-3 [33.7 kB] Get:87 http://localhost:3142/debian sid/main armhf libtirpc-dev armhf 1.3.4+ds-1 [179 kB] Get:88 http://localhost:3142/debian sid/main armhf libnsl-dev armhf 1.3.0-3 [61.8 kB] Get:89 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.37-12 [1267 kB] Get:90 http://localhost:3142/debian sid/main armhf libgomp1 armhf 13.2.0-7 [105 kB] Get:91 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 13.2.0-7 [592 kB] Get:92 http://localhost:3142/debian sid/main armhf libubsan1 armhf 13.2.0-7 [968 kB] Get:93 http://localhost:3142/debian sid/main armhf libgcc-11-dev armhf 11.4.0-5 [708 kB] Get:94 http://localhost:3142/debian sid/main armhf libstdc++-11-dev armhf 11.4.0-5 [1995 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.7 MB in 0s (192 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14615 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-6_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-2_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.45-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-2_amd64.deb ... Unpacking file (1:5.45-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-13+b1_amd64.deb ... Unpacking gettext-base (0.21-13+b1) ... 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Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-1) ... Setting up libasan8-armhf-cross (13.2.0-7cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-armhf-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-armhf-cross (13.2.0-7cross2) ... Setting up debhelper (13.11.8) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-1) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-7cross2) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armhf (12.10) ... Setting up libgcc-s1:armhf (13.2.0-7) ... Setting up libc6:armhf (2.37-12) ... Setting up libstdc++6:armhf (13.2.0-7) ... Setting up libkeyutils1:armhf (1.6.3-2) ... Setting up libssl3:armhf (3.1.4-2) ... Setting up libcrypt1:armhf (1:4.4.36-2) ... Setting up libcom-err2:armhf (1.47.0-2+b1) ... Setting up libgomp1:armhf (13.2.0-7) ... Setting up libasan6:armhf (11.4.0-5) ... Setting up libkrb5support0:armhf (1.20.1-5) ... Setting up libatomic1:armhf (13.2.0-7) ... Setting up libk5crypto3:armhf (1.20.1-5) ... Setting up libubsan1:armhf (13.2.0-7) ... Setting up libgcc-11-dev:armhf (11.4.0-5) ... Setting up libcrypt-dev:armhf (1:4.4.36-2) ... Setting up libkrb5-3:armhf (1.20.1-5) ... Setting up libgssapi-krb5-2:armhf (1.20.1-5) ... Setting up libtirpc3:armhf (1.3.4+ds-1) ... Setting up libtirpc-dev:armhf (1.3.4+ds-1) ... Setting up libnsl2:armhf (1.3.0-3) ... Setting up libnsl-dev:armhf (1.3.0-3) ... Setting up libc6-dev:armhf (2.37-12) ... Setting up libstdc++-11-dev:armhf (11.4.0-5) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41-7 dpkg-dev_1.22.1 g++-11_11.4.0-5 g++-13_13.2.0-7 gcc-11_11.4.0-5 gcc-13_13.2.0-7 libc6-dev_2.37-12 libstdc++-11-dev_11.4.0-5 libstdc++-13-dev_13.2.0-7 libstdc++-13-dev-armhf-cross_13.2.0-7cross2 libstdc++6_13.2.0-7 libstdc++6-armhf-cross_13.2.0-7cross2 linux-libc-dev_6.5.10-1 Package versions: adduser_3.137 apt_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 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liblocale-gettext-perl_1.07-6 liblsan0_13.2.0-7 liblz4-1_1.9.4-1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libnettle8_3.9.1-2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-5 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libquadmath0_13.2.0-7 libseccomp2_2.5.4-2 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-2 libsframe1_2.41-7 libsmartcols1_2.39.2-6 libss2_1.47.0-2+b1 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-5 libstdc++-13-dev_13.2.0-7 libstdc++-13-dev-armhf-cross_13.2.0-7cross2 libstdc++6_13.2.0-7 libstdc++6-armhf-cross_13.2.0-7cross2 libsub-override-perl_0.09-4 libsystemd0_255~rc3-2 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20231121-1 libtirpc-common_1.3.4+ds-1 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sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.2-6 util-linux-extra_2.39.2-6 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: repeatmasker-recon Binary: repeatmasker-recon Architecture: any Version: 1.08-7 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Nilesh Patra Homepage: https://www.repeatmasker.org/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/repeatmasker-recon Vcs-Git: https://salsa.debian.org/med-team/repeatmasker-recon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: repeatmasker-recon deb science optional arch=any Checksums-Sha1: a91b9f54dc277248c6848c2584531f7538bec3b4 108477 repeatmasker-recon_1.08.orig.tar.gz 9067a8ba2d5ae4c3611aa13ec382e6ca3e1e1ca4 5772 repeatmasker-recon_1.08-7.debian.tar.xz Checksums-Sha256: 699765fa49d18dbfac9f7a82ecd054464b468cb7521abe9c2bd8caccf08ee7d8 108477 repeatmasker-recon_1.08.orig.tar.gz 8f66c4b87e8dabba5daf8696d77a7302982c50697ceb344eeb2ba7cf7806eaa5 5772 repeatmasker-recon_1.08-7.debian.tar.xz Files: 48c5c650a312bc1cc3fdddcfd943deb0 108477 repeatmasker-recon_1.08.orig.tar.gz 0adb4b3fc0d6b1c73c766d75d582daef 5772 repeatmasker-recon_1.08-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFhNW4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGweA/+Iye7o06OssVgQkE6HeGgc1RvoHRUDE4l ZN/BoE6HYZuiJFHdfTi2a9ca/BgiC4DfhQ2JksiD1yb6H6wtbwXk6MqtUzFPUVxv WQyKxMIW/R35cM5LtI98abKRi+u5RTF0IXP4GHUm82emX84cyNN3RH3ZMesi1JR7 Gophw8pEJqcRwNSgBD5+27VZbFOZ/S8QlYUhSILSPyRH4QVFxEITq+/Um9l0gq4B 4Tiibw6ETHg/i/aWqF63ZVmgxuKCrV23FIp2WNfZcIFVcJjK3LEFLGLbFy20rbHv 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dpkg-source: info: applying 0001-udpate-paths.patch dpkg-source: info: applying 0002-fix_binary_name.patch dpkg-source: info: applying 0003-hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.WEgXIoFC9T/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-896a182a-199f-459b-8eb8-b2f8c206c653 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package repeatmasker-recon dpkg-buildpackage: info: source version 1.08-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j1 clean make[1]: Entering directory '/<>/src' rm -f imagespread eledef eleredef edgeredef famdef *.o *~ *.Addrs *.Counts *.pixie Makefile.bak core imagespread eledef eleredef edgeredef famdef TAGS make[1]: Leaving directory '/<>/src' dh_autoreconf_clean -O--sourcedirectory=src debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -rf bin dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[1]: Entering directory '/<>/src' arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro imagespread.c -o imagespread In file included from msps.h:4, from imagespread.c:2: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:16: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ seqlist.h:4:1: note: include ‘’ or provide a declaration of ‘isspace’ 3 | #include "string.h" +++ |+#include 4 | msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro eledef.c -o eledef In file included from msps.h:4, from eledef.c:1: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:16: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ seqlist.h:4:1: note: include ‘’ or provide a declaration of ‘isspace’ 3 | #include "string.h" +++ |+#include 4 | msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c: In function ‘main’: eledef.c:95:13: warning: ignoring return value of ‘freopen’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 95 | freopen(ele_name, "w", all_ele);\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c:246:7: note: in expansion of macro ‘DUMBBELL’ 246 | DUMBBELL; | ^~~~~~~~ eledef.c:95:13: warning: ignoring return value of ‘freopen’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 95 | freopen(ele_name, "w", all_ele);\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eledef.c:253:5: note: in expansion of macro ‘DUMBBELL’ 253 | DUMBBELL; | ^~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro eleredef.c -o eleredef In file included from msps.h:4, from ele.h:1, from eleredef.c:5: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:16: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ seqlist.h:4:1: note: include ‘’ or provide a declaration of ‘isspace’ 3 | #include "string.h" +++ |+#include 4 | msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro edgeredef.c -o edgeredef In file included from msps.h:4, from ele.h:1, from edgeredef.c:1: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:16: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ seqlist.h:4:1: note: include ‘’ or provide a declaration of ‘isspace’ 3 | #include "string.h" +++ |+#include 4 | msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ edgeredef.c: In function ‘general_edge_redef’: edgeredef.c:200:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | system(command); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro famdef.c -o famdef In file included from msps.h:4, from ele.h:1, from famdef.c:1: seqlist.h: In function ‘GetSeqNames’: seqlist.h:39:16: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 39 | while (isspace(*name_start)) name_start++; | ^~~~~~~ seqlist.h:4:1: note: include ‘’ or provide a declaration of ‘isspace’ 3 | #include "string.h" +++ |+#include 4 | msps.h: In function ‘scan_msp’: msps.h:116:25: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 3 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:32: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 5 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:36: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 6 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:43: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 8 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d msps.h:116:47: warning: format ‘%ld’ expects argument of type ‘long int *’, but argument 9 has type ‘int32_t *’ {aka ‘int *’} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d seqlist.h: In function ‘GetSeqNames’: seqlist.h:19:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/src' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src debian/rules execute_before_dh_auto_install make[1]: Entering directory '/<>' mkdir -p bin make[1]: Leaving directory '/<>' dh_auto_install --destdir=debian/repeatmasker-recon/ -a -O--sourcedirectory=src cd src && make -j1 install DESTDIR=/<>/debian/repeatmasker-recon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/src' cp imagespread eledef eleredef edgeredef famdef ../bin/ make[1]: Leaving directory '/<>/src' dh_install -a -O--sourcedirectory=src debian/rules execute_after_dh_install make[1]: Entering directory '/<>' cp scripts/recon.pl debian/repeatmasker-recon/usr/bin/repeatmasker-recon cp scripts/MSPCollect.pl debian/repeatmasker-recon/usr/bin/MSPCollect make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'repeatmasker-recon' in '../repeatmasker-recon_1.08-7_armhf.deb'. dpkg-deb: building package 'repeatmasker-recon-dbgsym' in '../repeatmasker-recon-dbgsym_1.08-7_armhf.deb'. dpkg-genbuildinfo --build=any -O../repeatmasker-recon_1.08-7_armhf.buildinfo dpkg-genchanges --build=any -O../repeatmasker-recon_1.08-7_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-11-26T20:08:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ repeatmasker-recon_1.08-7_armhf.changes: ---------------------------------------- Format: 1.8 Date: Sat, 09 Oct 2021 08:21:33 +0200 Source: repeatmasker-recon Binary: repeatmasker-recon repeatmasker-recon-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.08-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: repeatmasker-recon - finds repeat families from biological sequences Changes: repeatmasker-recon (1.08-7) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.0 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Remove trailing whitespace in debian/rules (routine-update) Checksums-Sha1: 9d89ff3b396aaff561ad076062c30a6cf7600fd4 107904 repeatmasker-recon-dbgsym_1.08-7_armhf.deb 6d131637fea7e37b7ec9e125a1421819bd0faa6b 5346 repeatmasker-recon_1.08-7_armhf.buildinfo 29d299a2393d7e7bb473645ace9ac986e2f02fc7 79792 repeatmasker-recon_1.08-7_armhf.deb Checksums-Sha256: 34b3735b9db8db6e3214dfcee7cf68f42fe8488102366b46a6b6e26be8e4b561 107904 repeatmasker-recon-dbgsym_1.08-7_armhf.deb a00e41eaabf18b6deec9f145a984ab8090045f40ae9bc1915135326b08f9cfb5 5346 repeatmasker-recon_1.08-7_armhf.buildinfo 5243a4909a0ec1bcc462cac2b9584c584f3ca8fe202f5cbdb2a3533cd970a4bc 79792 repeatmasker-recon_1.08-7_armhf.deb Files: 87e56ae0722627848e384a1da2227b86 107904 debug optional repeatmasker-recon-dbgsym_1.08-7_armhf.deb 3640ab763034b62a094b7cad15088b0f 5346 science optional repeatmasker-recon_1.08-7_armhf.buildinfo 468f0ef579564118acca592d5d068bc6 79792 science optional repeatmasker-recon_1.08-7_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: repeatmasker-recon Binary: repeatmasker-recon repeatmasker-recon-dbgsym Architecture: armhf Version: 1.08-7 Checksums-Md5: 87e56ae0722627848e384a1da2227b86 107904 repeatmasker-recon-dbgsym_1.08-7_armhf.deb 468f0ef579564118acca592d5d068bc6 79792 repeatmasker-recon_1.08-7_armhf.deb Checksums-Sha1: 9d89ff3b396aaff561ad076062c30a6cf7600fd4 107904 repeatmasker-recon-dbgsym_1.08-7_armhf.deb 29d299a2393d7e7bb473645ace9ac986e2f02fc7 79792 repeatmasker-recon_1.08-7_armhf.deb Checksums-Sha256: 34b3735b9db8db6e3214dfcee7cf68f42fe8488102366b46a6b6e26be8e4b561 107904 repeatmasker-recon-dbgsym_1.08-7_armhf.deb 5243a4909a0ec1bcc462cac2b9584c584f3ca8fe202f5cbdb2a3533cd970a4bc 79792 repeatmasker-recon_1.08-7_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 26 Nov 2023 20:08:46 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.2), bash (= 5.2.21-2), binutils (= 2.41-7), binutils-common (= 2.41-7), binutils-x86-64-linux-gnu (= 2.41-7), bsdextrautils (= 2.39.2-6), bsdutils (= 1:2.39.2-6), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), coreutils (= 9.4-2+b1), cpp (= 4:13.2.0-1), cpp-11 (= 11.4.0-5), cpp-13 (= 13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.8), debianutils (= 5.14), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1), dpkg-dev (= 1.22.1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1), g++-13 (= 13.2.0-7), gcc (= 4:13.2.0-1), gcc-11 (= 11.4.0-5), gcc-11-base (= 11.4.0-5), gcc-13 (= 13.2.0-7), gcc-13-base (= 13.2.0-7), gettext (= 0.21-13+b1), gettext-base (= 0.21-13+b1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-5), libasan8 (= 13.2.0-7), libatomic1 (= 13.2.0-7), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), 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+------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ repeatmasker-recon-dbgsym_1.08-7_armhf.deb ------------------------------------------ new Debian package, version 2.0. size 107904 bytes: control archive=808 bytes. 576 bytes, 12 lines control 628 bytes, 6 lines md5sums Package: repeatmasker-recon-dbgsym Source: repeatmasker-recon Version: 1.08-7 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 157 Depends: repeatmasker-recon (= 1.08-7) Section: debug Priority: optional Description: debug symbols for repeatmasker-recon Build-Ids: 14c42f2455889addbde7dda45012f2fa5a3056f6 24161e540605fec0ec7b3432829e7125a9c4ea14 633f9b551d007ced465c61c40b5a73816dc98e86 7fc4e9792cb008f10e0f514621d12b496e3f2c11 9a260af307b8dbce5b718eea2239b16a5fa30d29 drwxr-xr-x root/root 0 2021-10-09 06:21 ./ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/debug/.build-id/14/ -rw-r--r-- root/root 31096 2021-10-09 06:21 ./usr/lib/debug/.build-id/14/c42f2455889addbde7dda45012f2fa5a3056f6.debug drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/debug/.build-id/24/ -rw-r--r-- root/root 47584 2021-10-09 06:21 ./usr/lib/debug/.build-id/24/161e540605fec0ec7b3432829e7125a9c4ea14.debug drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/debug/.build-id/63/ -rw-r--r-- root/root 18344 2021-10-09 06:21 ./usr/lib/debug/.build-id/63/3f9b551d007ced465c61c40b5a73816dc98e86.debug drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/debug/.build-id/7f/ -rw-r--r-- root/root 11812 2021-10-09 06:21 ./usr/lib/debug/.build-id/7f/c4e9792cb008f10e0f514621d12b496e3f2c11.debug drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/debug/.build-id/9a/ -rw-r--r-- root/root 28508 2021-10-09 06:21 ./usr/lib/debug/.build-id/9a/260af307b8dbce5b718eea2239b16a5fa30d29.debug drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 4212 2021-10-09 06:21 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/repeatmasker-recon.debug drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/share/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-09 06:21 ./usr/share/doc/repeatmasker-recon-dbgsym -> repeatmasker-recon repeatmasker-recon_1.08-7_armhf.deb ----------------------------------- new Debian package, version 2.0. size 79792 bytes: control archive=1508 bytes. 1126 bytes, 23 lines control 1580 bytes, 22 lines md5sums Package: repeatmasker-recon Version: 1.08-7 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 407 Depends: libc6 (>= 2.34), perl:any Section: science Priority: optional Homepage: https://www.repeatmasker.org/ Description: finds repeat families from biological sequences The RECON package implements a de novo algorithm for the identification of repeat families from biological sequences. . The program implements an approach for the de novo identification and classification of repeat sequence families that is based on extensions to the usual approach of single linkage clustering of local pairwise alignments between genomic sequences. The extensions use multiple alignment information to define the boundaries of individual copies of the repeats and to distinguish homologous but distinct repeat element families. When tested on the human genome, this approach was able to properly identify and group known transposable elements. The program, should be useful for first-pass automatic classification of repeats in newly sequenced genomes. drwxr-xr-x root/root 0 2021-10-09 06:21 ./ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/bin/ -rwxr-xr-x root/root 1370 2021-10-09 06:21 ./usr/bin/MSPCollect -rwxr-xr-x root/root 18116 2021-10-09 06:21 ./usr/bin/edgeredef -rwxr-xr-x root/root 14016 2021-10-09 06:21 ./usr/bin/eledef -rwxr-xr-x root/root 26312 2021-10-09 06:21 ./usr/bin/eleredef -rwxr-xr-x root/root 18112 2021-10-09 06:21 ./usr/bin/famdef -rwxr-xr-x root/root 9892 2021-10-09 06:21 ./usr/bin/imagespread -rwxr-xr-x root/root 1841 2021-10-09 06:21 ./usr/bin/repeatmasker-recon drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/share/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/share/doc/repeatmasker-recon/ -rw-r--r-- root/root 2135 2021-10-09 06:21 ./usr/share/doc/repeatmasker-recon/00README.gz -rw-r--r-- root/root 781 2021-10-09 06:21 ./usr/share/doc/repeatmasker-recon/changelog.Debian.gz -rw-r--r-- root/root 1911 2021-10-09 06:21 ./usr/share/doc/repeatmasker-recon/copyright drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/share/doc/repeatmasker-recon/examples/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/share/doc/repeatmasker-recon/examples/Demos/ -rw-r--r-- root/root 1663 2021-10-09 06:21 ./usr/share/doc/repeatmasker-recon/examples/Demos/README drwxr-xr-x root/root 0 2014-02-05 22:05 ./usr/share/doc/repeatmasker-recon/examples/Demos/input/ -rw-r--r-- root/root 290374 2014-02-05 22:05 ./usr/share/doc/repeatmasker-recon/examples/Demos/input/elegans.msps -rw-r--r-- root/root 36 2014-02-05 22:05 ./usr/share/doc/repeatmasker-recon/examples/Demos/input/seqnames drwxr-xr-x root/root 0 2014-02-05 22:05 ./usr/share/doc/repeatmasker-recon/examples/Demos/output/ drwxr-xr-x root/root 0 2014-02-05 22:05 ./usr/share/doc/repeatmasker-recon/examples/Demos/standard/ -rw-r--r-- root/root 806 2014-02-05 22:05 ./usr/share/doc/repeatmasker-recon/examples/Demos/standard/Tc3.list -rw-r--r-- root/root 1514 2014-02-05 22:05 ./usr/share/doc/repeatmasker-recon/examples/Demos/standard/Tc3.msps drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-09 06:21 ./usr/share/man/man1/ -rw-r--r-- root/root 487 2021-10-09 06:21 ./usr/share/man/man1/MSPCollect.1.gz -rw-r--r-- root/root 385 2021-10-09 06:21 ./usr/share/man/man1/edgeredef.1.gz -rw-r--r-- root/root 373 2021-10-09 06:21 ./usr/share/man/man1/eledef.1.gz -rw-r--r-- root/root 408 2021-10-09 06:21 ./usr/share/man/man1/eleredef.1.gz -rw-r--r-- root/root 339 2021-10-09 06:21 ./usr/share/man/man1/famdef.1.gz -rw-r--r-- root/root 374 2021-10-09 06:21 ./usr/share/man/man1/imagespread.1.gz -rw-r--r-- root/root 711 2021-10-09 06:21 ./usr/share/man/man1/repeatmasker-recon.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1296 B] Get:5 copy:/<>/apt_archive ./ Packages [1375 B] Fetched 3286 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: The following packages have unmet dependencies: libreadline8 : Depends: readline-common but it is not installable Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:armhf : Depends: lintian:amd64 E: External solver failed with: The following packages have unmet dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 2168 Build-Time: 10 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 12 Job: repeatmasker-recon_1.08-7 Lintian: error Machine Architecture: amd64 Package: repeatmasker-recon Package-Time: 36 Source-Version: 1.08-7 Space: 2168 Status: successful Version: 1.08-7 -------------------------------------------------------------------------------- Finished at 2023-11-26T20:08:46Z Build needed 00:00:36, 2168k disk space