sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley

+==============================================================================+
| rna-star 2.7.11b+dfsg-2 (arm64)              Sun, 15 Jun 2025 10:07:09 +0000 |
+==============================================================================+

Package: rna-star
Version: 2.7.11b+dfsg-2
Source Version: 2.7.11b+dfsg-2
Distribution: unstable
Machine Architecture: amd64
Host Architecture: arm64
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-a93d6816-8025-4ba3-b294-09d189c422cf' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/rna-star-H9S082/resolver-eYXqCG' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://localhost:3142/debian unstable InRelease [208 kB]
Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB]
Get:3 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:5 http://localhost:3142/debian unstable/main Sources T-2025-06-15-0219.19-F-2025-06-15-0219.19.pdiff [3027 B]
Get:6 http://localhost:3142/debian unstable/contrib Sources T-2025-06-15-0805.48-F-2025-06-15-0805.48.pdiff [867 B]
Get:5 http://localhost:3142/debian unstable/main Sources T-2025-06-15-0219.19-F-2025-06-15-0219.19.pdiff [3027 B]
Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-06-15-0805.48-F-2025-06-15-0219.19.pdiff [42.3 kB]
Get:6 http://localhost:3142/debian unstable/contrib Sources T-2025-06-15-0805.48-F-2025-06-15-0805.48.pdiff [867 B]
Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-06-15-0805.48-F-2025-06-15-0219.19.pdiff [42.3 kB]
Get:8 http://localhost:3142/debian unstable/main arm64 Packages [10.0 MB]
Fetched 10.5 MB in 2s (4698 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'rna-star' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/rna-star.git
Please use:
git clone https://salsa.debian.org/med-team/rna-star.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 902 kB of source archives.
Get:1 http://localhost:3142/debian unstable/main rna-star 2.7.11b+dfsg-2 (dsc) [2163 B]
Get:2 http://localhost:3142/debian unstable/main rna-star 2.7.11b+dfsg-2 (tar) [521 kB]
Get:3 http://localhost:3142/debian unstable/main rna-star 2.7.11b+dfsg-2 (diff) [379 kB]
Fetched 902 kB in 0s (2004 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/rna-star-H9S082/rna-star-2.7.11b+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/rna-star-H9S082' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, libhts-dev, xxd, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
Filtered Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, libhts-dev, xxd, zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [812 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [855 B]
Fetched 2276 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  architecture-properties:arm64 autoconf automake autopoint autotools-dev
  binutils-aarch64-linux-gnu bsdextrautils comerr-dev:arm64
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64
  debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file
  g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-14-aarch64-linux-gnu
  gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64 gcc-14-cross-base
  gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian
  krb5-multidev:arm64 libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross
  libatomic1:arm64 libatomic1-arm64-cross libbrotli-dev:arm64 libbrotli1:arm64
  libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross
  libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libcrypt-dev:arm64
  libcrypt1:arm64 libcurl3t64-gnutls:arm64 libcurl4-gnutls-dev:arm64
  libdb5.3t64:arm64 libdebhelper-perl libdeflate-dev:arm64 libdeflate0:arm64
  libelf1t64 libevent-2.1-7t64:arm64 libfakeroot libffi8:arm64
  libfile-stripnondeterminism-perl libgcc-14-dev:arm64
  libgcc-14-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross
  libgmp-dev:arm64 libgmp10:arm64 libgmpxx4ldbl:arm64 libgnutls-dane0t64:arm64
  libgnutls-openssl27t64:arm64 libgnutls28-dev:arm64 libgnutls30t64:arm64
  libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64
  libgssrpc4t64:arm64 libhogweed6t64:arm64 libhts-dev:arm64 libhts3t64:arm64
  libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libidn2-0:arm64
  libidn2-dev:arm64 libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64
  libkadm5clnt-mit12:arm64 libkadm5srv-mit12:arm64 libkdb5-10t64:arm64
  libkeyutils1:arm64 libkrb5-3:arm64 libkrb5-dev:arm64 libkrb5support0:arm64
  libldap-dev:arm64 libldap2:arm64 liblsan0:arm64 liblsan0-arm64-cross
  liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1t64
  libnettle8t64:arm64 libnghttp2-14:arm64 libnghttp2-dev:arm64
  libnghttp3-9:arm64 libnghttp3-dev:arm64 libngtcp2-16:arm64
  libngtcp2-crypto-gnutls-dev:arm64 libngtcp2-crypto-gnutls8:arm64
  libngtcp2-dev:arm64 libp11-kit-dev:arm64 libp11-kit0:arm64 libpipeline1
  libpkgconf3 libpsl-dev:arm64 libpsl5t64:arm64 librtmp-dev:arm64
  librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsimde-dev
  libssh2-1-dev:arm64 libssh2-1t64:arm64 libssl-dev:arm64 libssl3t64:arm64
  libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64
  libstdc++6-arm64-cross libtasn1-6:arm64 libtasn1-6-dev:arm64 libtool
  libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross
  libuchardet0 libunbound8:arm64 libunistring5 libunistring5:arm64 libxml2
  libzstd-dev:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db
  nettle-dev:arm64 pkgconf:arm64 pkgconf-bin po-debconf sensible-utils xxd
  zlib1g:arm64 zlib1g-dev:arm64
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:arm64
  gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison
  gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
  gnulib-l10n groff krb5-doc:arm64 glibc-doc:arm64 libc-l10n:arm64
  locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64
  libcurl4-doc:arm64 libidn-dev:arm64 gmp-doc:arm64 libgmp10-doc:arm64
  libmpfr-dev:arm64 dns-root-data:arm64 gnutls-bin:arm64 gnutls-doc:arm64
  krb5-user:arm64 liblzma-doc:arm64 libnghttp2-doc:arm64 p11-kit-doc:arm64
  libssl-doc:arm64 libstdc++-14-doc:arm64 libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx bzip2-doc:arm64 ca-certificates:arm64
  libarchive-cpio-perl krb5-locales:arm64 libldap-common:arm64
  publicsuffix:arm64 libsasl2-modules:arm64 libtasn1-doc:arm64 libltdl-dev
  libmail-sendmail-perl
The following NEW packages will be installed:
  architecture-properties:arm64 autoconf automake autopoint autotools-dev
  binutils-aarch64-linux-gnu bsdextrautils comerr-dev:arm64
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64
  debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file
  g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-14-aarch64-linux-gnu
  gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64 gcc-14-cross-base
  gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian
  krb5-multidev:arm64 libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross
  libatomic1:arm64 libatomic1-arm64-cross libbrotli-dev:arm64 libbrotli1:arm64
  libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross
  libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libcrypt-dev:arm64
  libcrypt1:arm64 libcurl3t64-gnutls:arm64 libcurl4-gnutls-dev:arm64
  libdb5.3t64:arm64 libdebhelper-perl libdeflate-dev:arm64 libdeflate0:arm64
  libelf1t64 libevent-2.1-7t64:arm64 libfakeroot libffi8:arm64
  libfile-stripnondeterminism-perl libgcc-14-dev:arm64
  libgcc-14-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross
  libgmp-dev:arm64 libgmp10:arm64 libgmpxx4ldbl:arm64 libgnutls-dane0t64:arm64
  libgnutls-openssl27t64:arm64 libgnutls28-dev:arm64 libgnutls30t64:arm64
  libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64
  libgssrpc4t64:arm64 libhogweed6t64:arm64 libhts-dev:arm64 libhts3t64:arm64
  libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libidn2-0:arm64
  libidn2-dev:arm64 libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64
  libkadm5clnt-mit12:arm64 libkadm5srv-mit12:arm64 libkdb5-10t64:arm64
  libkeyutils1:arm64 libkrb5-3:arm64 libkrb5-dev:arm64 libkrb5support0:arm64
  libldap-dev:arm64 libldap2:arm64 liblsan0:arm64 liblsan0-arm64-cross
  liblzma-dev:arm64 liblzma5:arm64 libmagic-mgc libmagic1t64
  libnettle8t64:arm64 libnghttp2-14:arm64 libnghttp2-dev:arm64
  libnghttp3-9:arm64 libnghttp3-dev:arm64 libngtcp2-16:arm64
  libngtcp2-crypto-gnutls-dev:arm64 libngtcp2-crypto-gnutls8:arm64
  libngtcp2-dev:arm64 libp11-kit-dev:arm64 libp11-kit0:arm64 libpipeline1
  libpkgconf3 libpsl-dev:arm64 libpsl5t64:arm64 librtmp-dev:arm64
  librtmp1:arm64 libsasl2-2:arm64 libsasl2-modules-db:arm64 libsimde-dev
  libssh2-1-dev:arm64 libssh2-1t64:arm64 libssl-dev:arm64 libssl3t64:arm64
  libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64
  libstdc++6-arm64-cross libtasn1-6:arm64 libtasn1-6-dev:arm64 libtool
  libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross
  libuchardet0 libunbound8:arm64 libunistring5 libunistring5:arm64 libxml2
  libzstd-dev:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db
  nettle-dev:arm64 pkgconf:arm64 pkgconf-bin po-debconf
  sbuild-build-depends-main-dummy:arm64 sensible-utils xxd zlib1g:arm64
  zlib1g-dev:arm64
0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded.
Need to get 115 MB of archives.
After this operation, 494 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [964 B]
Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB]
Get:12 http://localhost:3142/debian unstable/main arm64 architecture-properties arm64 0.2.6 [2336 B]
Get:13 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.44-3 [1687 kB]
Get:19 http://localhost:3142/debian unstable/main arm64 gcc-14-base arm64 14.2.0-19 [49.4 kB]
Get:20 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 14.2.0-19 [54.1 kB]
Get:21 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.41-8 [2489 kB]
Get:22 http://localhost:3142/debian unstable/main arm64 libcrypt1 arm64 1:4.4.38-1 [91.8 kB]
Get:23 http://localhost:3142/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.38-1 [123 kB]
Get:24 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.41-8 [1621 kB]
Get:25 http://localhost:3142/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3 [24.6 kB]
Get:26 http://localhost:3142/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-3 [56.6 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu-base amd64 14.2.0-19cross1 [49.7 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 cpp-14-aarch64-linux-gnu amd64 14.2.0-19cross1 [11.2 MB]
Get:29 http://localhost:3142/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:14.2.0-1 [4844 B]
Get:30 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libc6-arm64-cross all 2.41-8cross1 [1165 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libgcc-s1-arm64-cross all 14.2.0-19cross1 [54.1 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 libgomp1-arm64-cross all 14.2.0-19cross1 [91.7 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 libitm1-arm64-cross all 14.2.0-19cross1 [26.0 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libatomic1-arm64-cross all 14.2.0-19cross1 [10.3 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libasan8-arm64-cross all 14.2.0-19cross1 [436 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 liblsan0-arm64-cross all 14.2.0-19cross1 [201 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libtsan2-arm64-cross all 14.2.0-19cross1 [416 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libstdc++6-arm64-cross all 14.2.0-19cross1 [546 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libubsan1-arm64-cross all 14.2.0-19cross1 [186 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 libhwasan0-arm64-cross all 14.2.0-19cross1 [256 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-arm64-cross all 14.2.0-19cross1 [2452 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu amd64 14.2.0-19cross1 [21.6 MB]
Get:44 http://localhost:3142/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:14.2.0-1 [1448 B]
Get:45 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-arm64-cross all 6.12.29-1cross1 [2397 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libc6-dev-arm64-cross all 2.41-8cross1 [1616 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-arm64-cross all 14.2.0-19cross1 [2552 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 g++-14-aarch64-linux-gnu amd64 14.2.0-19cross1 [12.2 MB]
Get:49 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:14.2.0-1 [1200 B]
Get:50 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B]
Get:51 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get:57 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.2 [919 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB]
Get:67 http://localhost:3142/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB]
Get:68 http://localhost:3142/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB]
Get:69 http://localhost:3142/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B]
Get:70 http://localhost:3142/debian unstable/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [266 kB]
Get:71 http://localhost:3142/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB]
Get:72 http://localhost:3142/debian unstable/main arm64 libssl3t64 arm64 3.5.0-2 [2745 kB]
Get:73 http://localhost:3142/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB]
Get:74 http://localhost:3142/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB]
Get:75 http://localhost:3142/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB]
Get:76 http://localhost:3142/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB]
Get:77 http://localhost:3142/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB]
Get:78 http://localhost:3142/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB]
Get:79 http://localhost:3142/debian unstable/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB]
Get:80 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 14.2.0-19 [2578 kB]
Get:81 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 14.2.0-19 [10.1 kB]
Get:82 http://localhost:3142/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB]
Get:83 http://localhost:3142/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB]
Get:84 http://localhost:3142/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB]
Get:85 http://localhost:3142/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get:86 http://localhost:3142/debian unstable/main arm64 libgmp10 arm64 2:6.3.0+dfsg-3 [535 kB]
Get:87 http://localhost:3142/debian unstable/main arm64 libnettle8t64 arm64 3.10.1-1 [311 kB]
Get:88 http://localhost:3142/debian unstable/main arm64 libhogweed6t64 arm64 3.10.1-1 [332 kB]
Get:89 http://localhost:3142/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB]
Get:90 http://localhost:3142/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB]
Get:91 http://localhost:3142/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB]
Get:92 http://localhost:3142/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get:93 http://localhost:3142/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB]
Get:94 http://localhost:3142/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Get:95 http://localhost:3142/debian unstable/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-9 [629 kB]
Get:96 http://localhost:3142/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB]
Get:97 http://localhost:3142/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB]
Get:98 http://localhost:3142/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB]
Get:99 http://localhost:3142/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB]
Get:100 http://localhost:3142/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB]
Get:101 http://localhost:3142/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB]
Get:102 http://localhost:3142/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB]
Get:103 http://localhost:3142/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get:104 http://localhost:3142/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get:105 http://localhost:3142/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get:106 http://localhost:3142/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.14.1-1 [353 kB]
Get:107 http://localhost:3142/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB]
Get:108 http://localhost:3142/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB]
Get:109 http://localhost:3142/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.9-2 [452 kB]
Get:110 http://localhost:3142/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2 [452 kB]
Get:111 http://localhost:3142/debian unstable/main arm64 libidn2-dev arm64 2.3.8-2 [101 kB]
Get:112 http://localhost:3142/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB]
Get:113 http://localhost:3142/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB]
Get:114 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 14.2.0-19 [638 kB]
Get:115 http://localhost:3142/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB]
Get:116 http://localhost:3142/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB]
Get:117 http://localhost:3142/debian unstable/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB]
Get:118 http://localhost:3142/debian unstable/main arm64 libgnutls28-dev arm64 3.8.9-2 [1419 kB]
Get:119 http://localhost:3142/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB]
Get:120 http://localhost:3142/debian unstable/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB]
Get:121 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get:122 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get:123 http://localhost:3142/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get:124 http://localhost:3142/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1 [112 kB]
Get:125 http://localhost:3142/debian unstable/main arm64 libnghttp3-dev arm64 1.8.0-1 [89.4 kB]
Get:126 http://localhost:3142/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.11.0-1 [33.9 kB]
Get:127 http://localhost:3142/debian unstable/main arm64 libngtcp2-dev arm64 1.11.0-1 [174 kB]
Get:128 http://localhost:3142/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB]
Get:129 http://localhost:3142/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get:130 http://localhost:3142/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB]
Get:131 http://localhost:3142/debian unstable/main arm64 libssl-dev arm64 3.5.0-2 [3385 kB]
Get:132 http://localhost:3142/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB]
Get:133 http://localhost:3142/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [335 kB]
Get:134 http://localhost:3142/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.14.1-1 [489 kB]
Get:135 http://localhost:3142/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB]
Get:136 http://localhost:3142/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB]
Get:137 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 14.2.0-19 [124 kB]
Get:138 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 14.2.0-19 [24.2 kB]
Get:139 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 14.2.0-19 [1161 kB]
Get:140 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 14.2.0-19 [2383 kB]
Get:141 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 14.2.0-19 [1039 kB]
Get:142 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 14.2.0-19 [1442 kB]
Get:143 http://localhost:3142/debian unstable/main arm64 libgcc-14-dev arm64 14.2.0-19 [2359 kB]
Get:144 http://localhost:3142/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB]
Get:145 http://localhost:3142/debian unstable/main arm64 liblzma5 arm64 5.8.1-1 [303 kB]
Get:146 http://localhost:3142/debian unstable/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB]
Get:147 http://localhost:3142/debian unstable/main arm64 liblzma-dev arm64 5.8.1-1 [344 kB]
Get:148 http://localhost:3142/debian unstable/main arm64 libhts-dev arm64 1.21+ds-1 [1658 kB]
Get:149 http://localhost:3142/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB]
Get:150 http://localhost:3142/debian unstable/main arm64 libstdc++-14-dev arm64 14.2.0-19 [2295 kB]
Get:151 http://localhost:3142/debian unstable/main amd64 xxd amd64 2:9.1.1230-2 [98.8 kB]
Preconfiguring packages ...
Fetched 115 MB in 1s (195 MB/s)
Selecting previously unselected package sensible-utils.
(Reading database ... 12888 files and directories currently installed.)
Preparing to unpack .../000-sensible-utils_0.0.25_all.deb ...
Unpacking sensible-utils (0.0.25) ...
Selecting previously unselected package libmagic-mgc.
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Unpacking libmagic-mgc (1:5.46-5) ...
Selecting previously unselected package libmagic1t64:amd64.
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Unpacking gettext-base (0.23.1-2) ...
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Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
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Unpacking groff-base (1.23.0-9) ...
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Unpacking bsdextrautils (2.41-5) ...
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Unpacking libpipeline1:amd64 (1.5.8-1) ...
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Unpacking man-db (2.13.1-1) ...
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Unpacking architecture-properties:arm64 (0.2.6) ...
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Unpacking m4 (1.4.19-8) ...
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Unpacking autoconf (2.72-3.1) ...
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Unpacking autotools-dev (20240727.1) ...
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Unpacking automake (1:1.17-4) ...
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Unpacking autopoint (0.23.1-2) ...
Selecting previously unselected package binutils-aarch64-linux-gnu.
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Unpacking binutils-aarch64-linux-gnu (2.44-3) ...
Selecting previously unselected package gcc-14-base:arm64.
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Unpacking gcc-14-base:arm64 (14.2.0-19) ...
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Unpacking libgcc-s1:arm64 (14.2.0-19) ...
Selecting previously unselected package libc6:arm64.
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Unpacking libc6:arm64 (2.41-8) ...
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Selecting previously unselected package gcc-14-aarch64-linux-gnu-base:amd64.
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Selecting previously unselected package cpp-14-aarch64-linux-gnu.
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Unpacking libgomp1-arm64-cross (14.2.0-19cross1) ...
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Selecting previously unselected package liblsan0-arm64-cross.
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Selecting previously unselected package libubsan1-arm64-cross.
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Unpacking libkeyutils1:arm64 (1.6.3-6) ...
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Setting up libhogweed6t64:arm64 (3.10.1-1) ...
Setting up libcrypt-dev:arm64 (1:4.4.38-1) ...
Setting up libc6-dev:arm64 (2.41-8) ...
Setting up libgcc-14-dev:arm64 (14.2.0-19) ...
Setting up libdeflate-dev:arm64 (1.23-2) ...
Setting up libstdc++-14-dev:arm64 (14.2.0-19) ...
Setting up libbrotli-dev:arm64 (1.1.0-2+b7) ...
Setting up libp11-kit-dev:arm64 (0.25.5-3) ...
Setting up libbz2-dev:arm64 (1.0.8-6) ...
Setting up libnghttp2-dev:arm64 (1.64.0-1.1) ...
Setting up libssl3t64:arm64 (3.5.0-2) ...
Setting up libidn2-0:arm64 (2.3.8-2) ...
Setting up libunbound8:arm64 (1.22.0-1+b1) ...
Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ...
Setting up comerr-dev:arm64 (2.1-1.47.2-3) ...
Setting up libssl-dev:arm64 (3.5.0-2) ...
Setting up libidn2-dev:arm64 (2.3.8-2) ...
Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libkrb5-3:arm64 (1.21.3-5) ...
Setting up libssh2-1t64:arm64 (1.11.1-1) ...
Setting up libldap2:arm64 (2.6.10+dfsg-1) ...
Setting up libgnutls30t64:arm64 (3.8.9-2) ...
Setting up libgnutls-openssl27t64:arm64 (3.8.9-2) ...
Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3) ...
Setting up nettle-dev:arm64 (3.10.1-1) ...
Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ...
Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ...
Setting up libgnutls-dane0t64:arm64 (3.8.9-2) ...
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ...
Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ...
Setting up libssh2-1-dev:arm64 (1.11.1-1) ...
Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ...
Setting up libgnutls28-dev:arm64 (3.8.9-2) ...
Setting up libcurl3t64-gnutls:arm64 (8.14.1-1) ...
Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.11.0-1) ...
Setting up libgssrpc4t64:arm64 (1.21.3-5) ...
Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libhts3t64:arm64 (1.21+ds-1) ...
Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ...
Setting up libkdb5-10t64:arm64 (1.21.3-5) ...
Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ...
Setting up krb5-multidev:arm64 (1.21.3-5) ...
Setting up libkrb5-dev:arm64 (1.21.3-5) ...
Setting up libcurl4-gnutls-dev:arm64 (8.14.1-1) ...
Setting up libhts-dev:arm64 (1.21+ds-1) ...
Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ...
Processing triggers for libc-bin (2.41-8) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64)
Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-8 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-arm64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-arm64-cross_14.2.0-19cross1 linux-libc-dev_6.12.32-1
Package versions: apt_3.0.2 apt-utils_3.0.2 architecture-properties_0.2.6 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b2 binutils_2.44-3 binutils-aarch64-linux-gnu_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-3 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-aarch64-linux-gnu_14.2.0-19cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-arm64_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-aarch64-linux-gnu_14.2.0-19cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-aarch64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-aarch64-linux-gnu_14.2.0-19cross1 gcc-14-aarch64-linux-gnu-base_14.2.0-19cross1 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-aarch64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.0.2 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-arm64-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-arm64-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.41-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-8 libc-dev-bin_2.41-8 libc6_2.41-8 libc6-arm64-cross_2.41-8cross1 libc6-dev_2.41-8 libc6-dev-arm64-cross_2.41-8cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-8 libcc1-0_14.2.0-19 libcom-err2_1.47.2-3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl3t64-gnutls_8.14.1-1 libcurl4-gnutls-dev_8.14.1-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdeflate-dev_1.23-2 libdeflate0_1.23-2 libdpkg-perl_1.22.20 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libfakeroot_1.37.1.2-1 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-19 libgcc-14-dev-arm64-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-arm64-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-arm64-cross_14.2.0-19cross1 libgprofng0_2.44-3 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhogweed6t64_3.10.1-1 libhts-dev_1.21+ds-1 libhts3t64_1.21+ds-1 libhtscodecs2_1.6.1-2 libhwasan0_14.2.0-19 libhwasan0-arm64-cross_14.2.0-19cross1 libidn2-0_2.3.8-2 libidn2-dev_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libitm1-arm64-cross_14.2.0-19cross1 libjansson4_2.14-2+b3 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 liblastlog2-2_2.41-5 libldap-dev_2.6.10+dfsg-1 libldap2_2.6.10+dfsg-1 liblsan0_14.2.0-19 liblsan0-arm64-cross_14.2.0-19cross1 liblz4-1_1.10.0-4 liblzma-dev_5.8.1-1 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1.1 libnghttp2-dev_1.64.0-1.1 libnghttp3-9_1.8.0-1 libnghttp3-dev_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls-dev_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libngtcp2-dev_1.11.0-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-3 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libquadmath0_14.2.0-19 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsimde-dev_0.8.2-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.5.0-2 libssl3t64_3.5.0-2 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-arm64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-arm64-cross_14.2.0-19cross1 libsystemd0_257.6-1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libtsan2-arm64-cross_14.2.0-19cross1 libubsan1_14.2.0-19 libubsan1-arm64-cross_14.2.0-19cross1 libuchardet0_0.0.8-1+b2 libudev1_257.6-1 libunbound8_1.22.0-1+b1 libunistring5_1.3-2 libuuid1_2.41-5 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.32-1 linux-libc-dev-arm64-cross_6.12.29-1cross1 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 mount_2.41-5 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 nettle-dev_3.10.1-1 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-1 perl_5.40.1-3 perl-base_5.40.1-3 perl-modules-5.40_5.40.1-3 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-3 util-linux_2.41-5 xxd_2:9.1.1230-2 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: rna-star
Binary: rna-star
Architecture: any
Version: 2.7.11b+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Andreas Tille <tille@debian.org>, Sascha Steinbiss <satta@debian.org>,
Homepage: https://github.com/alexdobin/STAR/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/rna-star
Vcs-Git: https://salsa.debian.org/med-team/rna-star.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, libhts-dev, xxd, zlib1g-dev, libsimde-dev
Package-List:
 rna-star deb science optional arch=any
Checksums-Sha1:
 afb7185ca0a5fb12a0997f2aa90081cd4dd33c03 520964 rna-star_2.7.11b+dfsg.orig.tar.xz
 406387f790fbe4d63fa986c07011dfec6e9e9ee1 379364 rna-star_2.7.11b+dfsg-2.debian.tar.xz
Checksums-Sha256:
 b06b9c0074fd7ab018edf7549582ee4ae29ed807aa8238811d888bf9ff73eaab 520964 rna-star_2.7.11b+dfsg.orig.tar.xz
 972d0fc2daf285be69ca1ec15d876a29656a804c5f3d7f822a2c29dcfc47d167 379364 rna-star_2.7.11b+dfsg-2.debian.tar.xz
Files:
 003d1d688848cbc667285f514a8b62b5 520964 rna-star_2.7.11b+dfsg.orig.tar.xz
 728a75d38a34c53ad8c277ad7c23626b 379364 rna-star_2.7.11b+dfsg-2.debian.tar.xz

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dpkg-source: warning: cannot verify inline signature for ./rna-star_2.7.11b+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting rna-star in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking rna-star_2.7.11b+dfsg.orig.tar.xz
dpkg-source: info: unpacking rna-star_2.7.11b+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying donotuse_own_htslib.patch
dpkg-source: info: applying mips_shm_noreserve.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying mathRoutinesNotInScope.patch
dpkg-source: info: applying do-not-enforce-avx2.patch
dpkg-source: info: applying gcc-12.patch
dpkg-source: info: applying packaged_simde
dpkg-source: info: applying fix_typos.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
OLDPWD=/home/crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SBUILD_CONFIG=/tmp/tmp.wj6YijGmui/sbuild.conf
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-a93d6816-8025-4ba3-b294-09d189c422cf
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa
XDG_SESSION_CLASS=user

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package rna-star
dpkg-buildpackage: info: source version 2.7.11b+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --sourcedirectory=source
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd source; /usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/source'
'rm' -f *.o opal/opal.o STAR STARstatic STARlong Depend.list parametersDefault.xxd
make[2]: Leaving directory '/<<PKGBUILDDIR>>/source'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--sourcedirectory=source
   dh_clean -O--sourcedirectory=source
 debian/rules binary-arch
dh binary-arch --sourcedirectory=source
   dh_update_autotools_config -a -O--sourcedirectory=source
   dh_autoreconf -a -O--sourcedirectory=source
   dh_auto_configure -a -O--sourcedirectory=source
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- CCFLAGS_common_add="-flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" CCFLAGS="-flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" LDFLAGS_add="-Wl,-z,relro -Wl,-z,now" STAR STARlong
	cd source && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc "CCFLAGS_common_add=-flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" "CCFLAGS=-flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" "LDFLAGS_add=-Wl,-z,relro -Wl,-z,now" STAR STARlong
make[2]: Entering directory '/<<PKGBUILDDIR>>/source'
xxd -i parametersDefault > parametersDefault.xxd
echo BAMbinSortByCoordinate.cpp BAMbinSortUnmapped.cpp BAMfunctions.cpp BAMoutput.cpp Chain.cpp ChimericAlign.cpp ChimericAlign_chimericBAMoutput.cpp ChimericAlign_chimericJunctionOutput.cpp ChimericAlign_chimericStitching.cpp ChimericDetection.cpp ChimericDetection_chimericDetectionMult.cpp ChimericSegment.cpp ClipCR4.cpp ClipMate_clip.cpp ClipMate_clipChunk.cpp ClipMate_initialize.cpp ErrorWarning.cpp GTF.cpp GTF_superTranscript.cpp GTF_transcriptGeneSJ.cpp Genome.cpp Genome_genomeGenerate.cpp Genome_genomeLoad.cpp Genome_genomeOutLoad.cpp Genome_insertSequences.cpp Genome_transformGenome.cpp GlobalVariables.cpp InOutStreams.cpp OutSJ.cpp PackedArray.cpp Parameters.cpp ParametersChimeric_initialize.cpp ParametersClip_initialize.cpp ParametersGenome.cpp ParametersSolo.cpp Parameters_closeReadsFiles.cpp Parameters_openReadsFiles.cpp Parameters_readFilesInit.cpp Parameters_readSAMheader.cpp Parameters_samAttributes.cpp Quantifications.cpp ReadAlign.cpp ReadAlignChunk.cpp ReadAlignChunk_mapChunk.cpp ReadAlignChunk_processChunks.cpp ReadAlign_CIGAR.cpp ReadAlign_alignBAM.cpp ReadAlign_assignAlignToWindow.cpp ReadAlign_calcCIGAR.cpp ReadAlign_chimericDetection.cpp ReadAlign_chimericDetectionOld.cpp ReadAlign_chimericDetectionOldOutput.cpp ReadAlign_chimericDetectionPEmerged.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlign_mapOneRead.cpp ReadAlign_mapOneReadSpliceGraph.cpp ReadAlign_mappedFilter.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlign_multMapSelect.cpp ReadAlign_oneRead.cpp ReadAlign_outputAlignments.cpp ReadAlign_outputSpliceGraphSAM.cpp ReadAlign_outputTranscriptCIGARp.cpp ReadAlign_outputTranscriptSAM.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign_outputVariation.cpp ReadAlign_peOverlapMergeMap.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_stitchPieces.cpp ReadAlign_stitchWindowSeeds.cpp ReadAlign_storeAligns.cpp ReadAlign_transformGenome.cpp ReadAlign_waspMap.cpp STAR.cpp SequenceFuns.cpp SharedMemory.cpp Solo.cpp SoloBarcode.cpp SoloBarcode_extractBarcode.cpp SoloFeature.cpp SoloFeature_addBAMtags.cpp SoloFeature_cellFiltering.cpp SoloFeature_collapseUMI_Graph.cpp SoloFeature_collapseUMIall.cpp SoloFeature_countCBgeneUMI.cpp SoloFeature_countSmartSeq.cpp SoloFeature_countVelocyto.cpp SoloFeature_emptyDrops_CR.cpp SoloFeature_loadRawMatrix.cpp SoloFeature_outputResults.cpp SoloFeature_processRecords.cpp SoloFeature_quantTranscript.cpp SoloFeature_redistributeReadsByCB.cpp SoloFeature_statsOutput.cpp SoloFeature_sumThreads.cpp SoloRead.cpp SoloReadBarcode.cpp SoloReadBarcode_getCBandUMI.cpp SoloReadFeature.cpp SoloReadFeature_inputRecords.cpp SoloReadFeature_record.cpp SoloRead_record.cpp SpliceGraph.cpp SpliceGraph_findSuperTr.cpp SpliceGraph_swScoreSpliced.cpp SpliceGraph_swTraceBack.cpp Stats.cpp SuffixArrayFuns.cpp SuperTranscriptome.cpp ThreadControl.cpp TimeFunctions.cpp Transcript.cpp Transcript_alignScore.cpp Transcript_convertGenomeCigar.cpp Transcript_generateCigarP.cpp Transcript_transformGenome.cpp Transcript_variationAdjust.cpp Transcript_variationOutput.cpp Transcriptome.cpp Transcriptome_alignExonOverlap.cpp Transcriptome_classifyAlign.cpp Transcriptome_geneCountsAddAlign.cpp Transcriptome_geneFullAlignOverlap.cpp Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp Transcriptome_quantAlign.cpp Variation.cpp bamRemoveDuplicates.cpp bamSortByCoordinate.cpp binarySearch2.cpp blocksOverlap.cpp extendAlign.cpp funCompareUintAndSuffixes.cpp funCompareUintAndSuffixesMemcmp.cpp funPrimaryAlignMark.cpp genomeParametersWrite.cpp genomeSAindex.cpp genomeScanFastaFiles.cpp insertSeqSA.cpp mapThreadsSpawn.cpp outputSJ.cpp readLoad.cpp samHeaders.cpp serviceFuns.cpp signalFromBAM.cpp sjAlignSplit.cpp sjdbBuildIndex.cpp sjdbInsertJunctions.cpp sjdbLoadFromFiles.cpp sjdbLoadFromStream.cpp sjdbPrepare.cpp soloInputFeatureUMI.cpp stitchAlignToTranscript.cpp stitchGapIndel.cpp stitchWindowAligns.cpp streamFuns.cpp stringSubstituteAll.cpp sysRemoveDir.cpp systemFunctions.cpp twoPassRunPass1.cpp bam_cat.c
BAMbinSortByCoordinate.cpp BAMbinSortUnmapped.cpp BAMfunctions.cpp BAMoutput.cpp Chain.cpp ChimericAlign.cpp ChimericAlign_chimericBAMoutput.cpp ChimericAlign_chimericJunctionOutput.cpp ChimericAlign_chimericStitching.cpp ChimericDetection.cpp ChimericDetection_chimericDetectionMult.cpp ChimericSegment.cpp ClipCR4.cpp ClipMate_clip.cpp ClipMate_clipChunk.cpp ClipMate_initialize.cpp ErrorWarning.cpp GTF.cpp GTF_superTranscript.cpp GTF_transcriptGeneSJ.cpp Genome.cpp Genome_genomeGenerate.cpp Genome_genomeLoad.cpp Genome_genomeOutLoad.cpp Genome_insertSequences.cpp Genome_transformGenome.cpp GlobalVariables.cpp InOutStreams.cpp OutSJ.cpp PackedArray.cpp Parameters.cpp ParametersChimeric_initialize.cpp ParametersClip_initialize.cpp ParametersGenome.cpp ParametersSolo.cpp Parameters_closeReadsFiles.cpp Parameters_openReadsFiles.cpp Parameters_readFilesInit.cpp Parameters_readSAMheader.cpp Parameters_samAttributes.cpp Quantifications.cpp ReadAlign.cpp ReadAlignChunk.cpp ReadAlignChunk_mapChunk.cpp ReadAlignChunk_processChunks.cpp ReadAlign_CIGAR.cpp ReadAlign_alignBAM.cpp ReadAlign_assignAlignToWindow.cpp ReadAlign_calcCIGAR.cpp ReadAlign_chimericDetection.cpp ReadAlign_chimericDetectionOld.cpp ReadAlign_chimericDetectionOldOutput.cpp ReadAlign_chimericDetectionPEmerged.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlign_mapOneRead.cpp ReadAlign_mapOneReadSpliceGraph.cpp ReadAlign_mappedFilter.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlign_multMapSelect.cpp ReadAlign_oneRead.cpp ReadAlign_outputAlignments.cpp ReadAlign_outputSpliceGraphSAM.cpp ReadAlign_outputTranscriptCIGARp.cpp ReadAlign_outputTranscriptSAM.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign_outputVariation.cpp ReadAlign_peOverlapMergeMap.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_stitchPieces.cpp ReadAlign_stitchWindowSeeds.cpp ReadAlign_storeAligns.cpp ReadAlign_transformGenome.cpp ReadAlign_waspMap.cpp STAR.cpp SequenceFuns.cpp SharedMemory.cpp Solo.cpp SoloBarcode.cpp SoloBarcode_extractBarcode.cpp SoloFeature.cpp SoloFeature_addBAMtags.cpp SoloFeature_cellFiltering.cpp SoloFeature_collapseUMI_Graph.cpp SoloFeature_collapseUMIall.cpp SoloFeature_countCBgeneUMI.cpp SoloFeature_countSmartSeq.cpp SoloFeature_countVelocyto.cpp SoloFeature_emptyDrops_CR.cpp SoloFeature_loadRawMatrix.cpp SoloFeature_outputResults.cpp SoloFeature_processRecords.cpp SoloFeature_quantTranscript.cpp SoloFeature_redistributeReadsByCB.cpp SoloFeature_statsOutput.cpp SoloFeature_sumThreads.cpp SoloRead.cpp SoloReadBarcode.cpp SoloReadBarcode_getCBandUMI.cpp SoloReadFeature.cpp SoloReadFeature_inputRecords.cpp SoloReadFeature_record.cpp SoloRead_record.cpp SpliceGraph.cpp SpliceGraph_findSuperTr.cpp SpliceGraph_swScoreSpliced.cpp SpliceGraph_swTraceBack.cpp Stats.cpp SuffixArrayFuns.cpp SuperTranscriptome.cpp ThreadControl.cpp TimeFunctions.cpp Transcript.cpp Transcript_alignScore.cpp Transcript_convertGenomeCigar.cpp Transcript_generateCigarP.cpp Transcript_transformGenome.cpp Transcript_variationAdjust.cpp Transcript_variationOutput.cpp Transcriptome.cpp Transcriptome_alignExonOverlap.cpp Transcriptome_classifyAlign.cpp Transcriptome_geneCountsAddAlign.cpp Transcriptome_geneFullAlignOverlap.cpp Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp Transcriptome_quantAlign.cpp Variation.cpp bamRemoveDuplicates.cpp bamSortByCoordinate.cpp binarySearch2.cpp blocksOverlap.cpp extendAlign.cpp funCompareUintAndSuffixes.cpp funCompareUintAndSuffixesMemcmp.cpp funPrimaryAlignMark.cpp genomeParametersWrite.cpp genomeSAindex.cpp genomeScanFastaFiles.cpp insertSeqSA.cpp mapThreadsSpawn.cpp outputSJ.cpp readLoad.cpp samHeaders.cpp serviceFuns.cpp signalFromBAM.cpp sjAlignSplit.cpp sjdbBuildIndex.cpp sjdbInsertJunctions.cpp sjdbLoadFromFiles.cpp sjdbLoadFromStream.cpp sjdbPrepare.cpp soloInputFeatureUMI.cpp stitchAlignToTranscript.cpp stitchGapIndel.cpp stitchWindowAligns.cpp streamFuns.cpp stringSubstituteAll.cpp sysRemoveDir.cpp systemFunctions.cpp twoPassRunPass1.cpp bam_cat.c
'rm' -f ./Depend.list
aarch64-linux-gnu-g++ -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -MM BAMbinSortByCoordinate.cpp BAMbinSortUnmapped.cpp BAMfunctions.cpp BAMoutput.cpp Chain.cpp ChimericAlign.cpp ChimericAlign_chimericBAMoutput.cpp ChimericAlign_chimericJunctionOutput.cpp ChimericAlign_chimericStitching.cpp ChimericDetection.cpp ChimericDetection_chimericDetectionMult.cpp ChimericSegment.cpp ClipCR4.cpp ClipMate_clip.cpp ClipMate_clipChunk.cpp ClipMate_initialize.cpp ErrorWarning.cpp GTF.cpp GTF_superTranscript.cpp GTF_transcriptGeneSJ.cpp Genome.cpp Genome_genomeGenerate.cpp Genome_genomeLoad.cpp Genome_genomeOutLoad.cpp Genome_insertSequences.cpp Genome_transformGenome.cpp GlobalVariables.cpp InOutStreams.cpp OutSJ.cpp PackedArray.cpp Parameters.cpp ParametersChimeric_initialize.cpp ParametersClip_initialize.cpp ParametersGenome.cpp ParametersSolo.cpp Parameters_closeReadsFiles.cpp Parameters_openReadsFiles.cpp Parameters_readFilesInit.cpp Parameters_readSAMheader.cpp Parameters_samAttributes.cpp Quantifications.cpp ReadAlign.cpp ReadAlignChunk.cpp ReadAlignChunk_mapChunk.cpp ReadAlignChunk_processChunks.cpp ReadAlign_CIGAR.cpp ReadAlign_alignBAM.cpp ReadAlign_assignAlignToWindow.cpp ReadAlign_calcCIGAR.cpp ReadAlign_chimericDetection.cpp ReadAlign_chimericDetectionOld.cpp ReadAlign_chimericDetectionOldOutput.cpp ReadAlign_chimericDetectionPEmerged.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlign_mapOneRead.cpp ReadAlign_mapOneReadSpliceGraph.cpp ReadAlign_mappedFilter.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlign_multMapSelect.cpp ReadAlign_oneRead.cpp ReadAlign_outputAlignments.cpp ReadAlign_outputSpliceGraphSAM.cpp ReadAlign_outputTranscriptCIGARp.cpp ReadAlign_outputTranscriptSAM.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign_outputVariation.cpp ReadAlign_peOverlapMergeMap.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_stitchPieces.cpp ReadAlign_stitchWindowSeeds.cpp ReadAlign_storeAligns.cpp ReadAlign_transformGenome.cpp ReadAlign_waspMap.cpp STAR.cpp SequenceFuns.cpp SharedMemory.cpp Solo.cpp SoloBarcode.cpp SoloBarcode_extractBarcode.cpp SoloFeature.cpp SoloFeature_addBAMtags.cpp SoloFeature_cellFiltering.cpp SoloFeature_collapseUMI_Graph.cpp SoloFeature_collapseUMIall.cpp SoloFeature_countCBgeneUMI.cpp SoloFeature_countSmartSeq.cpp SoloFeature_countVelocyto.cpp SoloFeature_emptyDrops_CR.cpp SoloFeature_loadRawMatrix.cpp SoloFeature_outputResults.cpp SoloFeature_processRecords.cpp SoloFeature_quantTranscript.cpp SoloFeature_redistributeReadsByCB.cpp SoloFeature_statsOutput.cpp SoloFeature_sumThreads.cpp SoloRead.cpp SoloReadBarcode.cpp SoloReadBarcode_getCBandUMI.cpp SoloReadFeature.cpp SoloReadFeature_inputRecords.cpp SoloReadFeature_record.cpp SoloRead_record.cpp SpliceGraph.cpp SpliceGraph_findSuperTr.cpp SpliceGraph_swScoreSpliced.cpp SpliceGraph_swTraceBack.cpp Stats.cpp SuffixArrayFuns.cpp SuperTranscriptome.cpp ThreadControl.cpp TimeFunctions.cpp Transcript.cpp Transcript_alignScore.cpp Transcript_convertGenomeCigar.cpp Transcript_generateCigarP.cpp Transcript_transformGenome.cpp Transcript_variationAdjust.cpp Transcript_variationOutput.cpp Transcriptome.cpp Transcriptome_alignExonOverlap.cpp Transcriptome_classifyAlign.cpp Transcriptome_geneCountsAddAlign.cpp Transcriptome_geneFullAlignOverlap.cpp Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp Transcriptome_quantAlign.cpp Variation.cpp bamRemoveDuplicates.cpp bamSortByCoordinate.cpp binarySearch2.cpp blocksOverlap.cpp extendAlign.cpp funCompareUintAndSuffixes.cpp funCompareUintAndSuffixesMemcmp.cpp funPrimaryAlignMark.cpp genomeParametersWrite.cpp genomeSAindex.cpp genomeScanFastaFiles.cpp insertSeqSA.cpp mapThreadsSpawn.cpp outputSJ.cpp readLoad.cpp samHeaders.cpp serviceFuns.cpp signalFromBAM.cpp sjAlignSplit.cpp sjdbBuildIndex.cpp sjdbInsertJunctions.cpp sjdbLoadFromFiles.cpp sjdbLoadFromStream.cpp sjdbPrepare.cpp soloInputFeatureUMI.cpp stitchAlignToTranscript.cpp stitchGapIndel.cpp stitchWindowAligns.cpp streamFuns.cpp stringSubstituteAll.cpp sysRemoveDir.cpp systemFunctions.cpp twoPassRunPass1.cpp bam_cat.c parametersDefault.xxd >> Depend.list
aarch64-linux-gnu-g++: warning: parametersDefault.xxd: linker input file unused because linking not done
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' systemFunctions.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' funPrimaryAlignMark.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_collapseUMI_Graph.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_collapseUMIall.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ParametersClip_initialize.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ClipMate_clip.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ClipCR4.cpp
cd opal && \
aarch64-linux-gnu-g++ -c -I./ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3  opal.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ClipMate_clipChunk.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ClipMate_initialize.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_loadRawMatrix.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_emptyDrops_CR.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' soloInputFeatureUMI.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_countSmartSeq.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_redistributeReadsByCB.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_quantTranscript.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_sumThreads.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_countVelocyto.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_countCBgeneUMI.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcriptome_classifyAlign.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_cellFiltering.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_statsOutput.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' bamSortByCoordinate.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloBarcode.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ParametersSolo.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloRead.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloRead_record.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloReadBarcode.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloReadBarcode_getCBandUMI.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloBarcode_extractBarcode.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloReadFeature.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloReadFeature_record.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloReadFeature_inputRecords.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Solo.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_outputResults.cpp
SoloFeature_outputResults.cpp: In member function ‘void SoloFeature::outputResults(bool, std::string)’:
SoloFeature_outputResults.cpp:51:23: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   51 |                 getcwd(cwd,4096);
      |                 ~~~~~~^~~~~~~~~~
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_processRecords.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SoloFeature_addBAMtags.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_transformGenome.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Genome_transformGenome.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcript_convertGenomeCigar.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' twoPassRunPass1.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' samHeaders.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Genome_genomeLoad.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Genome_genomeOutLoad.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcript_transformGenome.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_outputSpliceGraphSAM.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_mapOneReadSpliceGraph.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SpliceGraph.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SpliceGraph_swScoreSpliced.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SpliceGraph_swTraceBack.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SpliceGraph_findSuperTr.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' sjAlignSplit.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' GTF.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' GTF_transcriptGeneSJ.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' GTF_superTranscript.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SuperTranscriptome.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_outputAlignments.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' STAR.cpp
STAR.cpp: In function ‘int main(int, char**)’:
STAR.cpp:225:19: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  225 |         bgzf_flush(P.inOut->outBAMfileUnsorted);
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
STAR.cpp:230:19: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  230 |         bgzf_flush(P.inOut->outQuantBAMfile);
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SharedMemory.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' PackedArray.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SuffixArrayFuns.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Parameters.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Parameters_samAttributes.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' InOutStreams.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' SequenceFuns.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Genome.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ParametersGenome.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Stats.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcript.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcript_alignScore.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcript_generateCigarP.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Chain.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcript_variationAdjust.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Variation.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_waspMap.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_storeAligns.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_stitchPieces.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_multMapSelect.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_mapOneRead.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' readLoad.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlignChunk.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlignChunk_processChunks.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlignChunk_mapChunk.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' OutSJ.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' outputSJ.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' blocksOverlap.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ThreadControl.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' sysRemoveDir.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_maxMappableLength2strands.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' binarySearch2.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_outputTranscriptSAM.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_outputTranscriptSJ.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_outputTranscriptCIGARp.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_createExtendWindowsWithAlign.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_assignAlignToWindow.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_oneRead.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_stitchWindowSeeds.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_peOverlapMergeMap.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_mappedFilter.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ParametersChimeric_initialize.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_chimericDetection.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_chimericDetectionOld.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_chimericDetectionOldOutput.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ChimericDetection.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ChimericDetection_chimericDetectionMult.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_chimericDetectionPEmerged.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' stitchWindowAligns.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' extendAlign.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' stitchAlignToTranscript.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ChimericAlign_chimericJunctionOutput.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ChimericAlign_chimericBAMoutput.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ChimericAlign_chimericStitching.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Genome_genomeGenerate.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' genomeParametersWrite.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' genomeScanFastaFiles.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' genomeSAindex.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Genome_insertSequences.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' insertSeqSA.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' funCompareUintAndSuffixes.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' funCompareUintAndSuffixesMemcmp.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' TimeFunctions.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ErrorWarning.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' streamFuns.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' stringSubstituteAll.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcriptome.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcriptome_quantAlign.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcriptome_geneFullAlignOverlap.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_quantTranscriptome.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Quantifications.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Transcriptome_geneCountsAddAlign.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' sjdbLoadFromFiles.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' sjdbLoadFromStream.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' sjdbPrepare.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' sjdbBuildIndex.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' sjdbInsertJunctions.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' mapThreadsSpawn.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Parameters_readFilesInit.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' Parameters_readSAMheader.cpp
Parameters_readSAMheader.cpp: In member function ‘void Parameters::readSAMheader(std::string, std::vector<std::__cxx11::basic_string<char> >)’:
Parameters_readSAMheader.cpp:32:15: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   32 |         system(com1.c_str());
      |         ~~~~~~^~~~~~~~~~~~~~
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' bam_cat.c
cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++
bam_cat.c: In function ‘int bam_cat(int, char* const*, const bam_hdr_t*, const char*)’:
bam_cat.c:80:25: warning: ignoring return value of ‘int bam_hdr_write(BGZF*, const sam_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   80 |     if (h) bam_hdr_write(fp, h);
      |            ~~~~~~~~~~~~~^~~~~~~
bam_cat.c:96:44: warning: ignoring return value of ‘int bam_hdr_write(BGZF*, const sam_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |         if (h == 0 && i == 0) bam_hdr_write(fp, old);
      |                               ~~~~~~~~~~~~~^~~~~~~~~
bam_cat.c:99:23: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   99 |             bgzf_write(fp, (void*)((char*)in->uncompressed_block + in->block_offset), in->block_length - in->block_offset);
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam_cat.c:100:23: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  100 |             bgzf_flush(fp);
      |             ~~~~~~~~~~^~~~
bam_cat.c:111:31: warning: ignoring return value of ‘ssize_t bgzf_raw_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |                 bgzf_raw_write(fp, ebuf, len);
      |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bam_cat.c:115:40: warning: ignoring return value of ‘ssize_t bgzf_raw_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  115 |                 if(j!=0) bgzf_raw_write(fp, ebuf, es);
      |                          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
bam_cat.c:118:31: warning: ignoring return value of ‘ssize_t bgzf_raw_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  118 |                 bgzf_raw_write(fp, buf, len);
      |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
bam_cat.c:131:31: warning: ignoring return value of ‘ssize_t bgzf_raw_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |                 bgzf_raw_write(fp, ebuf, es);
      |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' serviceFuns.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' BAMoutput.cpp
BAMoutput.cpp: In member function ‘void BAMoutput::unsortedOneAlign(char*, long long unsigned int, long long unsigned int)’:
BAMoutput.cpp:59:19: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   59 |         bgzf_write(bgzfBAM,bamArray,binBytes1);
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAMoutput.cpp: In member function ‘void BAMoutput::unsortedFlush()’:
BAMoutput.cpp:72:15: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |     bgzf_write(bgzfBAM,bamArray,binBytes1);
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' BAMfunctions.cpp
BAMfunctions.cpp: In function ‘void outBAMwriteHeader(BGZF*, const std::string&, const std::vector<std::__cxx11::basic_string<char> >&, const std::vector<long long unsigned int>&)’:
BAMfunctions.cpp:78:15: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |     bgzf_write(fp,"BAM\001",4);
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
BAMfunctions.cpp:80:15: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   80 |     bgzf_write(fp,(char*) &hlen,sizeof(hlen));
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAMfunctions.cpp:81:15: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     bgzf_write(fp,samh.c_str(),hlen);
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
BAMfunctions.cpp:83:15: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   83 |     bgzf_write(fp,(char*) &nchr,sizeof(nchr));
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAMfunctions.cpp:87:19: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |         bgzf_write(fp,(char*) &rlen,sizeof(rlen));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAMfunctions.cpp:88:19: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   88 |         bgzf_write(fp,chrn.at(ii).data(),rlen); //this includes \0 at the end of the string
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAMfunctions.cpp:89:19: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   89 |         bgzf_write(fp,(char*) &slen,sizeof(slen));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BAMfunctions.cpp:91:15: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |     bgzf_flush(fp);
      |     ~~~~~~~~~~^~~~
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' ReadAlign_alignBAM.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' BAMbinSortByCoordinate.cpp
BAMbinSortByCoordinate.cpp: In function ‘void BAMbinSortByCoordinate(unsigned int, long long unsigned int, long long unsigned int, long long unsigned int, std::string, Parameters&, Genome&, Solo&)’:
BAMbinSortByCoordinate.cpp:73:19: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   73 |         bgzf_write(bgzfBin, bam0, size0);
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
BAMbinSortByCoordinate.cpp:76:15: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   76 |     bgzf_flush(bgzfBin);
      |     ~~~~~~~~~~^~~~~~~~~
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' signalFromBAM.cpp
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' bamRemoveDuplicates.cpp
bamRemoveDuplicates.cpp: In function ‘void bamRemoveDuplicates(std::string, std::string, Parameters&)’:
bamRemoveDuplicates.cpp:130:18: warning: ignoring return value of ‘int bam_hdr_write(BGZF*, const sam_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  130 |     bam_hdr_write(bgzfOut, bamHeader);
      |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
bamRemoveDuplicates.cpp:157:27: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  157 |                 bgzf_write(bgzfOut,bamRaw,bamS);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
bamRemoveDuplicates.cpp:268:15: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  268 |     bgzf_write(bgzfOut,bamRaw,bamLength);
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
bamRemoveDuplicates.cpp:269:15: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  269 |     bgzf_flush(bgzfOut);
      |     ~~~~~~~~~~^~~~~~~~~
aarch64-linux-gnu-g++ -c -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' BAMbinSortUnmapped.cpp
BAMbinSortUnmapped.cpp: In function ‘void BAMbinSortUnmapped(unsigned int, long long unsigned int, std::string, Parameters&, Genome&, Solo&)’:
BAMbinSortUnmapped.cpp:62:23: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   62 |             bgzf_write(bgzfBin, bam0, size0);
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
BAMbinSortUnmapped.cpp:80:15: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   80 |     bgzf_flush(bgzfBin);
      |     ~~~~~~~~~~^~~~~~~~~
aarch64-linux-gnu-g++ -o STAR  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 systemFunctions.o funPrimaryAlignMark.o SoloFeature_collapseUMI_Graph.o SoloFeature_collapseUMIall.o ParametersClip_initialize.o ClipMate_clip.o ClipCR4.o opal/opal.o ClipMate_clipChunk.o ClipMate_initialize.o SoloFeature_loadRawMatrix.o SoloFeature_emptyDrops_CR.o soloInputFeatureUMI.o SoloFeature_countSmartSeq.o SoloFeature_redistributeReadsByCB.o SoloFeature_quantTranscript.o SoloFeature_sumThreads.o SoloFeature_countVelocyto.o SoloFeature_countCBgeneUMI.o Transcriptome_classifyAlign.o Transcriptome_geneFullAlignOverlap_ExonOverIntron.o Transcriptome_alignExonOverlap.cpp SoloFeature_cellFiltering.o SoloFeature_statsOutput.o bamSortByCoordinate.o SoloBarcode.o ParametersSolo.o SoloRead.o SoloRead_record.o SoloReadBarcode.o SoloReadBarcode_getCBandUMI.o SoloBarcode_extractBarcode.o SoloReadFeature.o SoloReadFeature_record.o SoloReadFeature_inputRecords.o Solo.o SoloFeature.o SoloFeature_outputResults.o SoloFeature_processRecords.o SoloFeature_addBAMtags.o ReadAlign_transformGenome.o Genome_transformGenome.o Transcript_convertGenomeCigar.o twoPassRunPass1.o samHeaders.o Genome_genomeLoad.o Genome_genomeOutLoad.o Transcript_transformGenome.o ReadAlign_outputSpliceGraphSAM.o ReadAlign_mapOneReadSpliceGraph.o SpliceGraph.o SpliceGraph_swScoreSpliced.o SpliceGraph_swTraceBack.o SpliceGraph_findSuperTr.o sjAlignSplit.o GTF.o GTF_transcriptGeneSJ.o GTF_superTranscript.o SuperTranscriptome.o ReadAlign_outputAlignments.o ReadAlign.o STAR.o SharedMemory.o PackedArray.o SuffixArrayFuns.o Parameters.o Parameters_samAttributes.o InOutStreams.o SequenceFuns.o Genome.o ParametersGenome.o Stats.o Transcript.o Transcript_alignScore.o Transcript_generateCigarP.o Chain.o Transcript_variationAdjust.o Variation.o ReadAlign_waspMap.o ReadAlign_storeAligns.o ReadAlign_stitchPieces.o ReadAlign_multMapSelect.o ReadAlign_mapOneRead.o readLoad.o ReadAlignChunk.o ReadAlignChunk_processChunks.o ReadAlignChunk_mapChunk.o OutSJ.o outputSJ.o blocksOverlap.o ThreadControl.o sysRemoveDir.o ReadAlign_maxMappableLength2strands.o binarySearch2.o ReadAlign_outputTranscriptSAM.o ReadAlign_outputTranscriptSJ.o ReadAlign_outputTranscriptCIGARp.o ReadAlign_calcCIGAR.cpp ReadAlign_createExtendWindowsWithAlign.o ReadAlign_assignAlignToWindow.o ReadAlign_oneRead.o ReadAlign_stitchWindowSeeds.o ReadAlign_peOverlapMergeMap.o ReadAlign_mappedFilter.o ParametersChimeric_initialize.o ReadAlign_chimericDetection.o ReadAlign_chimericDetectionOld.o ReadAlign_chimericDetectionOldOutput.o ChimericDetection.o ChimericDetection_chimericDetectionMult.o ReadAlign_chimericDetectionPEmerged.o stitchWindowAligns.o extendAlign.o stitchAlignToTranscript.o ChimericSegment.cpp ChimericAlign.cpp ChimericAlign_chimericJunctionOutput.o ChimericAlign_chimericBAMoutput.o ChimericAlign_chimericStitching.o Genome_genomeGenerate.o genomeParametersWrite.o genomeScanFastaFiles.o genomeSAindex.o Genome_insertSequences.o insertSeqSA.o funCompareUintAndSuffixes.o funCompareUintAndSuffixesMemcmp.o TimeFunctions.o ErrorWarning.o streamFuns.o stringSubstituteAll.o Transcriptome.o Transcriptome_quantAlign.o Transcriptome_geneFullAlignOverlap.o ReadAlign_quantTranscriptome.o Quantifications.o Transcriptome_geneCountsAddAlign.o sjdbLoadFromFiles.o sjdbLoadFromStream.o sjdbPrepare.o sjdbBuildIndex.o sjdbInsertJunctions.o mapThreadsSpawn.o Parameters_readFilesInit.o Parameters_openReadsFiles.cpp Parameters_closeReadsFiles.cpp Parameters_readSAMheader.o bam_cat.o serviceFuns.o GlobalVariables.cpp BAMoutput.o BAMfunctions.o ReadAlign_alignBAM.o BAMbinSortByCoordinate.o signalFromBAM.o bamRemoveDuplicates.o BAMbinSortUnmapped.o  -pthread -lhts -Bdynamic -lz -Wl,-z,relro -Wl,-z,now
lto-wrapper: warning: using serial compilation of 20 LTRANS jobs
lto-wrapper: note: see the ‘-flto’ option documentation for more information
In function ‘opalSearchDatabase’,
    inlined from ‘opalAlign’ at ClipCR4.cpp:77:23,
    inlined from ‘clipChunk’ at ClipMate_clipChunk.cpp:41:23,
    inlined from ‘mapChunk’ at ReadAlignChunk_mapChunk.cpp:10:39:
opal/opal.cpp:1450:35: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
 1450 |     bool *skip = new bool[dbLength];
      |                                   ^
/usr/aarch64-linux-gnu/include/c++/14/new: In member function ‘mapChunk’:
/usr/aarch64-linux-gnu/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here
  133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
BAMbinSortUnmapped.cpp: In function ‘BAMbinSortUnmapped’:
BAMbinSortUnmapped.cpp:30:59: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   30 |     ifstream *bamInStream = new ifstream [bamInFile.size()];
      |                                                           ^
/usr/aarch64-linux-gnu/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here
  133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
aarch64-linux-gnu-g++ -o STARlong  -O3 -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE="2024-10-25T14:34:57+00:00 <place not set in Debian package>"' -flto -flto -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -D'COMPILE_FOR_LONG_READS' -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 systemFunctions.o funPrimaryAlignMark.o SoloFeature_collapseUMI_Graph.o SoloFeature_collapseUMIall.o ParametersClip_initialize.o ClipMate_clip.o ClipCR4.o opal/opal.o ClipMate_clipChunk.o ClipMate_initialize.o SoloFeature_loadRawMatrix.o SoloFeature_emptyDrops_CR.o soloInputFeatureUMI.o SoloFeature_countSmartSeq.o SoloFeature_redistributeReadsByCB.o SoloFeature_quantTranscript.o SoloFeature_sumThreads.o SoloFeature_countVelocyto.o SoloFeature_countCBgeneUMI.o Transcriptome_classifyAlign.o Transcriptome_geneFullAlignOverlap_ExonOverIntron.o Transcriptome_alignExonOverlap.cpp SoloFeature_cellFiltering.o SoloFeature_statsOutput.o bamSortByCoordinate.o SoloBarcode.o ParametersSolo.o SoloRead.o SoloRead_record.o SoloReadBarcode.o SoloReadBarcode_getCBandUMI.o SoloBarcode_extractBarcode.o SoloReadFeature.o SoloReadFeature_record.o SoloReadFeature_inputRecords.o Solo.o SoloFeature.o SoloFeature_outputResults.o SoloFeature_processRecords.o SoloFeature_addBAMtags.o ReadAlign_transformGenome.o Genome_transformGenome.o Transcript_convertGenomeCigar.o twoPassRunPass1.o samHeaders.o Genome_genomeLoad.o Genome_genomeOutLoad.o Transcript_transformGenome.o ReadAlign_outputSpliceGraphSAM.o ReadAlign_mapOneReadSpliceGraph.o SpliceGraph.o SpliceGraph_swScoreSpliced.o SpliceGraph_swTraceBack.o SpliceGraph_findSuperTr.o sjAlignSplit.o GTF.o GTF_transcriptGeneSJ.o GTF_superTranscript.o SuperTranscriptome.o ReadAlign_outputAlignments.o ReadAlign.o STAR.o SharedMemory.o PackedArray.o SuffixArrayFuns.o Parameters.o Parameters_samAttributes.o InOutStreams.o SequenceFuns.o Genome.o ParametersGenome.o Stats.o Transcript.o Transcript_alignScore.o Transcript_generateCigarP.o Chain.o Transcript_variationAdjust.o Variation.o ReadAlign_waspMap.o ReadAlign_storeAligns.o ReadAlign_stitchPieces.o ReadAlign_multMapSelect.o ReadAlign_mapOneRead.o readLoad.o ReadAlignChunk.o ReadAlignChunk_processChunks.o ReadAlignChunk_mapChunk.o OutSJ.o outputSJ.o blocksOverlap.o ThreadControl.o sysRemoveDir.o ReadAlign_maxMappableLength2strands.o binarySearch2.o ReadAlign_outputTranscriptSAM.o ReadAlign_outputTranscriptSJ.o ReadAlign_outputTranscriptCIGARp.o ReadAlign_calcCIGAR.cpp ReadAlign_createExtendWindowsWithAlign.o ReadAlign_assignAlignToWindow.o ReadAlign_oneRead.o ReadAlign_stitchWindowSeeds.o ReadAlign_peOverlapMergeMap.o ReadAlign_mappedFilter.o ParametersChimeric_initialize.o ReadAlign_chimericDetection.o ReadAlign_chimericDetectionOld.o ReadAlign_chimericDetectionOldOutput.o ChimericDetection.o ChimericDetection_chimericDetectionMult.o ReadAlign_chimericDetectionPEmerged.o stitchWindowAligns.o extendAlign.o stitchAlignToTranscript.o ChimericSegment.cpp ChimericAlign.cpp ChimericAlign_chimericJunctionOutput.o ChimericAlign_chimericBAMoutput.o ChimericAlign_chimericStitching.o Genome_genomeGenerate.o genomeParametersWrite.o genomeScanFastaFiles.o genomeSAindex.o Genome_insertSequences.o insertSeqSA.o funCompareUintAndSuffixes.o funCompareUintAndSuffixesMemcmp.o TimeFunctions.o ErrorWarning.o streamFuns.o stringSubstituteAll.o Transcriptome.o Transcriptome_quantAlign.o Transcriptome_geneFullAlignOverlap.o ReadAlign_quantTranscriptome.o Quantifications.o Transcriptome_geneCountsAddAlign.o sjdbLoadFromFiles.o sjdbLoadFromStream.o sjdbPrepare.o sjdbBuildIndex.o sjdbInsertJunctions.o mapThreadsSpawn.o Parameters_readFilesInit.o Parameters_openReadsFiles.cpp Parameters_closeReadsFiles.cpp Parameters_readSAMheader.o bam_cat.o serviceFuns.o GlobalVariables.cpp BAMoutput.o BAMfunctions.o ReadAlign_alignBAM.o BAMbinSortByCoordinate.o signalFromBAM.o bamRemoveDuplicates.o BAMbinSortUnmapped.o  -pthread -lhts -Bdynamic -lz -Wl,-z,relro -Wl,-z,now
Transcript.h:10:7: warning: type ‘struct Transcript’ violates the C++ One Definition Rule [-Wodr]
   10 | class Transcript {
      |       ^
Transcript.h:10:7: note: a different type is defined in another translation unit
   10 | class Transcript {
      |       ^
Transcript.h:12:10: note: the first difference of corresponding definitions is field ‘exons’
   12 |     uint exons[MAX_N_EXONS][EX_SIZE]; //coordinates of all exons: r-start, g-start, length
      |          ^
Transcript.h:12:10: note: a field of same name but different type is defined in another translation unit
   12 |     uint exons[MAX_N_EXONS][EX_SIZE]; //coordinates of all exons: r-start, g-start, length
      |          ^
Transcript.h:10:7: note: array types have different bounds
   10 | class Transcript {
      |       ^
ReadAlign.h:22:7: warning: type ‘struct ReadAlign’ violates the C++ One Definition Rule [-Wodr]
   22 | class ReadAlign {
      |       ^
ReadAlign.h:22:7: note: a different type is defined in another translation unit
   22 | class ReadAlign {
      |       ^
ReadAlign.h:57:20: note: the first difference of corresponding definitions is field ‘trA’
   57 |         Transcript trA, trA1, *trInit; //transcript, best tr, next best tr, initialized tr
      |                    ^
ReadAlign.h:57:20: note: a field of same name but different type is defined in another translation unit
   57 |         Transcript trA, trA1, *trInit; //transcript, best tr, next best tr, initialized tr
      |                    ^
Transcript.h:10:7: note: type ‘struct Transcript’ itself violates the C++ One Definition Rule
   10 | class Transcript {
      |       ^
ReadAlign.h:214:14: warning: type of ‘calcCIGAR’ does not match original declaration [-Wlto-type-mismatch]
  214 |         void calcCIGAR(Transcript const &trOut, uint nMates, uint iExMate, uint leftMate);
      |              ^
ReadAlign_calcCIGAR.cpp:3:6: note: ‘calcCIGAR’ was previously declared here
    3 | void ReadAlign::calcCIGAR(Transcript const &trOut, uint nMates, uint iExMate, uint leftMate) {
      |      ^
lto-wrapper: warning: using serial compilation of 20 LTRANS jobs
lto-wrapper: note: see the ‘-flto’ option documentation for more information
In function ‘opalSearchDatabase’,
    inlined from ‘opalAlign’ at ClipCR4.cpp:77:23,
    inlined from ‘clipChunk’ at ClipMate_clipChunk.cpp:41:23,
    inlined from ‘mapChunk’ at ReadAlignChunk_mapChunk.cpp:10:39:
opal/opal.cpp:1450:35: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
 1450 |     bool *skip = new bool[dbLength];
      |                                   ^
/usr/aarch64-linux-gnu/include/c++/14/new: In member function ‘mapChunk’:
/usr/aarch64-linux-gnu/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here
  133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
BAMbinSortUnmapped.cpp: In function ‘BAMbinSortUnmapped’:
BAMbinSortUnmapped.cpp:30:59: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   30 |     ifstream *bamInStream = new ifstream [bamInFile.size()];
      |                                                           ^
/usr/aarch64-linux-gnu/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here
  133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
make[2]: Leaving directory '/<<PKGBUILDDIR>>/source'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--sourcedirectory=source
   dh_prep -a -O--sourcedirectory=source
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install source/STAR source/STARlong usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--sourcedirectory=source
   dh_installchangelogs -a -O--sourcedirectory=source
   dh_installman -a -O--sourcedirectory=source
   dh_installsystemduser -a -O--sourcedirectory=source
   dh_perl -a -O--sourcedirectory=source
   dh_link -a -O--sourcedirectory=source
   dh_strip_nondeterminism -a -O--sourcedirectory=source
   debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_fixperms -a -O--sourcedirectory=source
   dh_missing -a -O--sourcedirectory=source
   dh_dwz -a -O--sourcedirectory=source
   dh_strip -a -O--sourcedirectory=source
   dh_makeshlibs -a -O--sourcedirectory=source
   dh_shlibdeps -a -O--sourcedirectory=source
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
   dh_installdeb -a -O--sourcedirectory=source
   debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), "
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_md5sums -a -O--sourcedirectory=source
   dh_builddeb -a -O--sourcedirectory=source
dpkg-deb: building package 'rna-star' in '../rna-star_2.7.11b+dfsg-2_arm64.deb'.
dpkg-deb: building package 'rna-star-dbgsym' in '../rna-star-dbgsym_2.7.11b+dfsg-2_arm64.deb'.
 dpkg-genbuildinfo --build=any -O../rna-star_2.7.11b+dfsg-2_arm64.buildinfo
 dpkg-genchanges --build=any -O../rna-star_2.7.11b+dfsg-2_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2025-06-15T10:12:53Z

+------------------------------------------------------------------------------+
| Finished Timed Build Commands                                                |
+------------------------------------------------------------------------------+


rm -Rf /<<PKGBUILDDIR>>/
----------------------------------------------------


I: Finished running 'rm -Rf /<<PKGBUILDDIR>>/'.

Finished processing commands.
--------------------------------------------------------------------------------

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


rna-star_2.7.11b+dfsg-2_arm64.changes:
--------------------------------------

Format: 1.8
Date: Fri, 25 Oct 2024 16:34:57 +0200
Source: rna-star
Binary: rna-star rna-star-dbgsym
Built-For-Profiles: cross nocheck
Architecture: arm64
Version: 2.7.11b+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
 rna-star   - ultrafast universal RNA-seq aligner
Changes:
 rna-star (2.7.11b+dfsg-2) unstable; urgency=medium
 .
   * Team upload.
   * d/control: simplify Aritechture selection via the provisions from
     the architecture-properties package.
   * d/rules: fix typo that was affecting the reprotest when the shell
     was set to Bash.
   * d/rules: fix dh_auto_clean.
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 de180ffdfefb6f365da73f69f5d2350a4886a214d4dc637ff5c7cda9930d0d11 6987 rna-star_2.7.11b+dfsg-2_arm64.buildinfo
 b8e834d12f9283168abd9ab5ef6c5dc1f4407dd910f91ca7cacfc9a3f2facd41 729032 rna-star_2.7.11b+dfsg-2_arm64.deb
Files:
 6da77500a75adea6a414e971e00aac29 17538780 debug optional rna-star-dbgsym_2.7.11b+dfsg-2_arm64.deb
 500c3d2b473acc6dc8e653357c2917b0 6987 science optional rna-star_2.7.11b+dfsg-2_arm64.buildinfo
 bae1ff64ba2653141725dd6f3bd9d8e2 729032 science optional rna-star_2.7.11b+dfsg-2_arm64.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: rna-star
Binary: rna-star rna-star-dbgsym
Architecture: arm64
Version: 2.7.11b+dfsg-2
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Checksums-Sha256:
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 b8e834d12f9283168abd9ab5ef6c5dc1f4407dd910f91ca7cacfc9a3f2facd41 729032 rna-star_2.7.11b+dfsg-2_arm64.deb
Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Sun, 15 Jun 2025 10:12:53 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
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 automake (= 1:1.17-4),
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 libbz2-dev (= 1.0.8-6),
 libc-bin (= 2.41-8),
 libc-dev-bin (= 2.41-8),
 libc6 (= 2.41-8),
 libc6-dev (= 2.41-8),
 libcap-ng0 (= 0.8.5-4+b1),
 libcap2 (= 1:2.75-8),
 libcc1-0 (= 14.2.0-19),
 libcom-err2 (= 1.47.2-3),
 libcrypt-dev (= 1:4.4.38-1),
 libcrypt1 (= 1:4.4.38-1),
 libctf-nobfd0 (= 2.44-3),
 libctf0 (= 2.44-3),
 libcurl3t64-gnutls (= 8.14.1-1),
 libcurl4-gnutls-dev (= 8.14.1-1),
 libdb5.3t64 (= 5.3.28+dfsg2-9),
 libdebconfclient0 (= 0.278),
 libdebhelper-perl (= 13.24.2),
 libdeflate-dev (= 1.23-2),
 libdeflate0 (= 1.23-2),
 libdpkg-perl (= 1.22.20),
 libelf1t64 (= 0.192-4),
 libevent-2.1-7t64 (= 2.1.12-stable-10+b1),
 libffi8 (= 3.4.8-2),
 libfile-stripnondeterminism-perl (= 1.14.1-2),
 libgcc-14-dev (= 14.2.0-19),
 libgcc-s1 (= 14.2.0-19),
 libgdbm-compat4t64 (= 1.24-2),
 libgdbm6t64 (= 1.24-2),
 libgmp-dev (= 2:6.3.0+dfsg-3),
 libgmp10 (= 2:6.3.0+dfsg-3),
 libgmpxx4ldbl (= 2:6.3.0+dfsg-3),
 libgnutls-dane0t64 (= 3.8.9-2),
 libgnutls-openssl27t64 (= 3.8.9-2),
 libgnutls28-dev (= 3.8.9-2),
 libgnutls30t64 (= 3.8.9-2),
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 libgssapi-krb5-2 (= 1.21.3-5),
 libgssrpc4t64 (= 1.21.3-5),
 libhogweed6t64 (= 3.10.1-1),
 libhts-dev (= 1.21+ds-1),
 libhts3t64 (= 1.21+ds-1),
 libhtscodecs2 (= 1.6.1-2),
 libhwasan0 (= 14.2.0-19),
 libidn2-0 (= 2.3.8-2),
 libidn2-dev (= 2.3.8-2),
 libisl23 (= 0.27-1),
 libitm1 (= 14.2.0-19),
 libjansson4 (= 2.14-2+b3),
 libk5crypto3 (= 1.21.3-5),
 libkadm5clnt-mit12 (= 1.21.3-5),
 libkadm5srv-mit12 (= 1.21.3-5),
 libkdb5-10t64 (= 1.21.3-5),
 libkeyutils1 (= 1.6.3-6),
 libkrb5-3 (= 1.21.3-5),
 libkrb5-dev (= 1.21.3-5),
 libkrb5support0 (= 1.21.3-5),
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 libldap2 (= 2.6.10+dfsg-1),
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 libmagic1t64 (= 1:5.46-5),
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 libnettle8t64 (= 3.10.1-1),
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 libnghttp2-dev (= 1.64.0-1.1),
 libnghttp3-9 (= 1.8.0-1),
 libnghttp3-dev (= 1.8.0-1),
 libngtcp2-16 (= 1.11.0-1),
 libngtcp2-crypto-gnutls-dev (= 1.11.0-1),
 libngtcp2-crypto-gnutls8 (= 1.11.0-1),
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 libp11-kit-dev (= 0.25.5-3),
 libp11-kit0 (= 0.25.5-3),
 libpam-modules (= 1.7.0-3),
 libpam-modules-bin (= 1.7.0-3),
 libpam-runtime (= 1.7.0-3),
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 libsasl2-2 (= 2.1.28+dfsg1-9),
 libsasl2-modules-db (= 2.1.28+dfsg1-9),
 libseccomp2 (= 2.6.0-2),
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 libsqlite3-0 (= 3.46.1-6),
 libssh2-1-dev (= 1.11.1-1),
 libssh2-1t64 (= 1.11.1-1),
 libssl-dev (= 3.5.0-2),
 libssl3t64 (= 3.5.0-2),
 libstdc++-14-dev (= 14.2.0-19),
 libstdc++6 (= 14.2.0-19),
 libsystemd0 (= 257.6-1),
 libtasn1-6 (= 4.20.0-2),
 libtasn1-6-dev (= 4.20.0-2),
 libtinfo6 (= 6.5+20250216-2),
 libtool (= 2.5.4-4),
 libtsan2 (= 14.2.0-19),
 libubsan1 (= 14.2.0-19),
 libuchardet0 (= 0.0.8-1+b2),
 libudev1 (= 257.6-1),
 libunbound8 (= 1.22.0-1+b1),
 libunistring5 (= 1.3-2),
 libuuid1 (= 2.41-5),
 libxml2 (= 2.12.7+dfsg+really2.9.14-1),
 libzstd-dev (= 1.5.7+dfsg-1),
 libzstd1 (= 1.5.7+dfsg-1),
 linux-libc-dev (= 6.12.32-1),
 m4 (= 1.4.19-8),
 make (= 4.4.1-2),
 man-db (= 2.13.1-1),
 mawk (= 1.3.4.20250131-1),
 ncurses-base (= 6.5+20250216-2),
 ncurses-bin (= 6.5+20250216-2),
 nettle-dev (= 3.10.1-1),
 openssl-provider-legacy (= 3.5.0-2),
 patch (= 2.8-1),
 perl (= 5.40.1-3),
 perl-base (= 5.40.1-3),
 perl-modules-5.40 (= 5.40.1-3),
 pkgconf (= 1.8.1-4),
 pkgconf-bin (= 1.8.1-4),
 po-debconf (= 1.0.21+nmu1),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.25),
 sysvinit-utils (= 3.14-4),
 tar (= 1.35+dfsg-3.1),
 util-linux (= 2.41-5),
 xxd (= 2:9.1.1230-2),
 xz-utils (= 5.8.1-1),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1729866897"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


rna-star-dbgsym_2.7.11b+dfsg-2_arm64.deb
----------------------------------------

 new Debian package, version 2.0.
 size 17538780 bytes: control archive=648 bytes.
     431 bytes,    12 lines      control
     298 bytes,     3 lines      md5sums
 Package: rna-star-dbgsym
 Source: rna-star
 Version: 2.7.11b+dfsg-2
 Auto-Built-Package: debug-symbols
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 20528
 Depends: rna-star (= 2.7.11b+dfsg-2)
 Section: debug
 Priority: optional
 Description: debug symbols for rna-star
 Build-Ids: 7139f6d4c856e19173984078866de8395ae86706 d9d89190aace06741aa9200a4f2561921a834354

drwxr-xr-x root/root         0 2024-10-25 14:34 ./
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/lib/debug/.build-id/71/
-rw-r--r-- root/root   7148712 2024-10-25 14:34 ./usr/lib/debug/.build-id/71/39f6d4c856e19173984078866de8395ae86706.debug
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/lib/debug/.build-id/d9/
-rw-r--r-- root/root   7152384 2024-10-25 14:34 ./usr/lib/debug/.build-id/d9/d89190aace06741aa9200a4f2561921a834354.debug
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/lib/debug/.dwz/aarch64-linux-gnu/
-rw-r--r-- root/root   6704264 2024-10-25 14:34 ./usr/lib/debug/.dwz/aarch64-linux-gnu/rna-star.debug
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/share/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-10-25 14:34 ./usr/share/doc/rna-star-dbgsym -> rna-star


rna-star_2.7.11b+dfsg-2_arm64.deb
---------------------------------

 new Debian package, version 2.0.
 size 729032 bytes: control archive=1460 bytes.
    1406 bytes,    25 lines      control
     732 bytes,    11 lines      md5sums
 Package: rna-star
 Version: 2.7.11b+dfsg-2
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2699
 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhts3t64 (>= 1.17), libstdc++6 (>= 14)
 Built-Using: simde (= 0.8.2-3)
 Section: science
 Priority: optional
 Homepage: https://github.com/alexdobin/STAR/
 Description: ultrafast universal RNA-seq aligner
  Spliced Transcripts Alignment to a Reference (STAR) software based on a
  previously undescribed RNA-seq alignment algorithm that uses sequential
  maximum mappable seed search in uncompressed suffix arrays followed by
  seed clustering and stitching procedure. STAR outperforms other aligners
  by a factor of >50 in mapping speed, aligning to the human genome 550
  million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
  while at the same time improving alignment sensitivity and precision. In
  addition to unbiased de novo detection of canonical junctions, STAR can
  discover non-canonical splices and chimeric (fusion) transcripts, and is
  also capable of mapping full-length RNA sequences. Using Roche 454
  sequencing of reverse transcription polymerase chain reaction amplicons,
  the authors experimentally validated 1960 novel intergenic splice
  junctions with an 80-90% success rate, corroborating the high precision
  of the STAR mapping strategy.

drwxr-xr-x root/root         0 2024-10-25 14:34 ./
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/bin/
-rwxr-xr-x root/root   1237624 2024-10-25 14:34 ./usr/bin/STAR
-rwxr-xr-x root/root   1237624 2024-10-25 14:34 ./usr/bin/STARlong
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/share/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/share/doc-base/
-rw-r--r-- root/root      1179 2024-10-25 14:33 ./usr/share/doc-base/rna-star.rna-star
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/share/doc/rna-star/
-rw-r--r-- root/root       220 2024-10-25 14:33 ./usr/share/doc/rna-star/README.Debian
-rw-r--r-- root/root      3547 2024-01-25 21:55 ./usr/share/doc/rna-star/README.md
-rw-r--r-- root/root      7407 2024-01-25 21:55 ./usr/share/doc/rna-star/RELEASEnotes.md.gz
-rw-r--r-- root/root    239211 2024-01-25 21:55 ./usr/share/doc/rna-star/STARmanual.pdf
-rw-r--r-- root/root      2304 2024-10-25 14:34 ./usr/share/doc/rna-star/changelog.Debian.gz
-rw-r--r-- root/root     15091 2024-01-25 21:55 ./usr/share/doc/rna-star/changelog.gz
-rw-r--r-- root/root      2606 2024-10-25 14:34 ./usr/share/doc/rna-star/copyright
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/share/man/
drwxr-xr-x root/root         0 2024-10-25 14:34 ./usr/share/man/man1/
-rw-r--r-- root/root       824 2024-10-25 14:34 ./usr/share/man/man1/STAR.1.gz


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1394 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1473 B]
Fetched 3482 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64
  libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libio-string-perl libipc-run3-perl
  libipc-system-simple-perl libiterator-perl libiterator-util-perl
  libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libksba8 libldap2 liblist-compare-perl liblist-someutils-perl
  liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
  liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16
  libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0
  libpackage-stash-perl libparams-classify-perl libparams-util-perl
  libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
  libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64
  libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2
  libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl
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  netbase openssl patchutils perl-openssl-defaults plzip procps
  readline-common shared-mime-info t1utils ucf unzip
Suggested packages:
  apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor
  gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl
  libscalar-number-perl libbareword-filehandles-perl libindirect-perl
  libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl
  libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch
  libtext-template-perl readline-doc zip
Recommended packages:
  gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n
  libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common
  liblist-someutils-xs-perl libfreezethaw-perl libgpm2 libmath-base85-perl
  libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules
  libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl
  libxml-sax-expat-perl psmisc linux-sysctl-defaults
The following NEW packages will be installed:
  appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64
  libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libio-string-perl libipc-run3-perl
  libipc-system-simple-perl libiterator-perl libiterator-util-perl
  libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libksba8 libldap2 liblist-compare-perl liblist-someutils-perl
  liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
  liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16
  libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0
  libpackage-stash-perl libparams-classify-perl libparams-util-perl
  libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
  libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64
  libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2
  libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl
  libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl
  libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl
  libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl
  libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl
  libunicode-utf8-perl liburi-perl libvariable-magic-perl
  libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2
  libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop
  netbase openssl patchutils perl-openssl-defaults plzip procps
  readline-common sbuild-build-depends-lintian-dummy:arm64 shared-mime-info
  t1utils ucf unzip
0 upgraded, 174 newly installed, 0 to remove and 0 not upgraded.
Need to get 22.6 MB of archives.
After this operation, 88.1 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.0-2 [1490 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.2-1 [1516 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3 [24.7 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B]
Get:24 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.14.1-1 [383 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 2.2.0-4+b2 [119 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.22-1 [63.1 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.0.5-1 [226 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.0.5-1 [538 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.67-1 [35.5 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.7-21 [129 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.7-21 [634 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.18.0-1 [3125 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.42 [68.3 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:62 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.68-1 [217 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get:71 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get:72 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:80 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:81 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB]
Get:82 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:83 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-2 [32.6 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB]
Get:89 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:91 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1+b1 [24.2 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:99 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:100 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:101 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:102 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-4 [25.6 kB]
Get:103 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:104 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:105 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:106 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get:107 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:108 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:110 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:111 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get:112 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:113 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:114 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:115 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:116 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:117 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:118 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB]
Get:119 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB]
Get:120 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get:121 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:122 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:123 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB]
Get:124 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:125 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:126 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB]
Get:127 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB]
Get:128 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get:129 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:130 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB]
Get:131 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:132 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-3 [39.0 kB]
Get:133 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB]
Get:134 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB]
Get:135 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:136 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:137 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get:138 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:139 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:140 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B]
Get:141 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB]
Get:142 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:143 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get:144 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB]
Get:145 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:146 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB]
Get:147 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB]
Get:148 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get:149 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b3 [42.3 kB]
Get:150 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:151 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB]
Get:152 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB]
Get:153 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:154 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.48-2 [65.7 kB]
Get:155 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.30-1+b1 [27.4 kB]
Get:156 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get:157 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B]
Get:158 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB]
Get:159 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB]
Get:160 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:161 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB]
Get:162 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-3 [20.1 kB]
Get:163 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB]
Get:164 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:165 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:166 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
Get:167 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB]
Get:168 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.903.0+ds-1 [35.4 kB]
Get:169 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-3 [65.0 kB]
Get:170 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:171 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:172 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:173 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB]
Get:174 http://localhost:3142/debian unstable/main amd64 lintian all 2.122.0 [1063 kB]
Preconfiguring packages ...
Fetched 22.6 MB in 0s (106 MB/s)
Selecting previously unselected package netbase.
(Reading database ... 20927 files and directories currently installed.)
Preparing to unpack .../000-netbase_6.5_all.deb ...
Unpacking netbase (6.5) ...
Selecting previously unselected package libncursesw6:amd64.
Preparing to unpack .../001-libncursesw6_6.5+20250216-2_amd64.deb ...
Unpacking libncursesw6:amd64 (6.5+20250216-2) ...
Selecting previously unselected package libproc2-0:amd64.
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Setting up libapt-pkg-perl (0.1.42) ...
Setting up liblz1:amd64 (1.15-3) ...
Setting up libberkeleydb-perl:amd64 (0.66-1) ...
Setting up plzip (1.12-3) ...
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode
Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Setting up libnpth0t64:amd64 (1.8-3) ...
Setting up libkeyutils1:amd64 (1.6.3-6) ...
Setting up libunicode-utf8-perl (0.62-3) ...
Setting up libmouse-perl:amd64 (2.5.11-1+b1) ...
Setting up libgpg-error0:amd64 (1.51-4) ...
Setting up libdata-messagepack-perl (1.02-2) ...
Setting up libclass-inspector-perl (1.36-3) ...
Setting up libdynaloader-functions-perl (0.004-2) ...
Setting up libtext-glob-perl (0.11-3) ...
Setting up libclass-method-modifiers-perl (2.15-1) ...
Setting up liblist-compare-perl (0.55-2) ...
Setting up libclone-perl:amd64 (0.47-1+b1) ...
Setting up libyaml-0-2:amd64 (0.2.5-2) ...
Setting up libsub-identify-perl (0.14-3+b3) ...
Setting up libcpanel-json-xs-perl:amd64 (4.39-1) ...
Setting up libhtml-tagset-perl (3.24-1) ...
Setting up libdevel-size-perl (0.84-1+b1) ...
Setting up unzip (6.0-29) ...
Setting up libbrotli1:amd64 (1.1.0-2+b7) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libyaml-libyaml-perl (0.903.0+ds-1) ...
Setting up libio-interactive-perl (1.027-1) ...
Setting up libtry-tiny-perl (0.32-1) ...
Setting up libnghttp2-14:amd64 (1.64.0-1.1) ...
Setting up perl-openssl-defaults:amd64 (7+b2) ...
Setting up libmldbm-perl (2.05-4) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up libgcrypt20:amd64 (1.11.0-7) ...
Setting up liblzo2-2:amd64 (2.10-3+b1) ...
Setting up libtime-moment-perl (0.44-2+b4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libidn2-0:amd64 (2.3.8-2) ...
Setting up libcom-err2:amd64 (1.47.2-3) ...
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Setting up libsereal-encoder-perl (5.004+ds-1+b3) ...
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Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libnet-netmask-perl (2.0002-2) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up libkrb5support0:amd64 (1.21.3-5) ...
Setting up libnumber-compare-perl (0.03-3) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Setting up patchutils (0.4.2-1) ...
Setting up libjson-maybexs-perl (1.004008-1) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up libio-string-perl (1.08-4) ...
Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ...
Setting up libclass-data-inheritable-perl (0.10-1) ...
Setting up libfile-find-rule-perl (0.34-4) ...
Setting up libipc-system-simple-perl (1.30-2) ...
Setting up libnet-domain-tld-perl (1.75-4) ...
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Setting up t1utils (1.41-4) ...
Setting up diffstat (1.67-1) ...
Setting up libproc2-0:amd64 (2:4.0.4-8) ...
Setting up libvariable-magic-perl (0.64-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Setting up libncursesw6:amd64 (6.5+20250216-2) ...
Setting up libk5crypto3:amd64 (1.21.3-5) ...
Setting up libparams-util-perl (1.102-3+b1) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Setting up libtime-duration-perl (1.21-2) ...
Setting up libtext-xslate-perl:amd64 (3.5.9-2+b1) ...
Setting up libnghttp3-9:amd64 (1.8.0-1) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libcapture-tiny-perl (0.50-1) ...
Setting up libtimedate-perl (2.3300-2) ...
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Setting up libffi8:amd64 (3.4.8-2) ...
Setting up libdata-validate-domain-perl (0.15-1) ...
Setting up libproc-processtable-perl:amd64 (0.636-1+b3) ...
Setting up libpath-tiny-perl (0.148-1) ...
Setting up lzop (1.04-2) ...
Setting up libassuan9:amd64 (3.0.2-2) ...
Setting up procps (2:4.0.4-8) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libtasn1-6:amd64 (4.20.0-2) ...
Setting up libipc-run3-perl (0.049-1) ...
Setting up libregexp-wildcards-perl (1.05-3) ...
Setting up libfile-sharedir-perl (1.118-3) ...
Setting up libaliased-perl (0.34-3) ...
Setting up netbase (6.5) ...
Setting up libngtcp2-16:amd64 (1.11.0-1) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b5) ...
Setting up libkrb5-3:amd64 (1.21.3-5) ...
Setting up libstemmer0d:amd64 (2.2.0-4+b2) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libterm-readkey-perl (2.38-2+b4) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up openssl (3.5.0-2) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b4) ...
Setting up libperlio-gzip-perl (0.20-1+b4) ...
Setting up readline-common (8.2-6) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.004+ds-1+b3) ...
Setting up libmarkdown2:amd64 (2.2.7-2.1) ...
Setting up libldap2:amd64 (2.6.10+dfsg-1) ...
Setting up liburi-perl (5.30-1) ...
Setting up iso-codes (4.18.0-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b4) ...
Setting up libnet-ssleay-perl:amd64 (1.94-3) ...
Setting up libksba8:amd64 (1.6.7-2+b1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libnet-http-perl (6.23-1) ...
Setting up libtext-markdown-discount-perl (0.18-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-2) ...
Setting up ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
150 added, 0 removed; done.
Setting up libglib2.0-0t64:amd64 (2.84.2-1) ...
No schema files found: doing nothing.
Setting up libdata-validate-uri-perl (0.07-3) ...
Setting up libxs-parse-keyword-perl (0.48-2) ...
Setting up shared-mime-info (2.4-5+b2) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up ucf (3.0052) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libsyntax-keyword-try-perl (0.30-1+b1) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ...
Setting up gpgconf (2.4.7-21) ...
Setting up libio-socket-ssl-perl (2.089-1) ...
Setting up gpg (2.4.7-21) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.00-2) ...
Setting up libhtml-form-perl (6.12-1) ...
Setting up libgnutls30t64:amd64 (3.8.9-2) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libxmlb2:amd64 (0.3.22-1) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libcgi-pm-perl (4.68-1) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libmodule-runtime-perl (0.018-1) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.60-1) ...
Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up libcurl3t64-gnutls:amd64 (8.14.1-1) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libappstream5:amd64 (1.0.5-1) ...
Setting up appstream (1.0.5-1) ...
✔ Metadata cache was updated successfully.
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.28-2) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.78-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.19-1) ...
Setting up lintian (2.122.0) ...
Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ...
Processing triggers for libc-bin (2.41-8) ...
Processing triggers for man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 323
Distribution: unstable
Foreign Architectures: arm64
Host Architecture: arm64
Install-Time: 12
Job: rna-star_2.7.11b+dfsg-2
Lintian: pass
Machine Architecture: amd64
Package: rna-star
Package-Time: 344
Source-Version: 2.7.11b+dfsg-2
Space: n/a
Status: successful
Version: 2.7.11b+dfsg-2
--------------------------------------------------------------------------------
Finished at 2025-06-15T10:12:53Z
Build needed 00:05:44, no disk space