sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | rsem 1.3.3+dfsg-1 (mipsel) Tue, 19 May 2020 07:52:21 +0000 | +==============================================================================+ Package: rsem Version: 1.3.3+dfsg-1 Source Version: 1.3.3+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-37f723f3-5c1e-4e57-a77e-c08c1fc16d98' with '<>' I: NOTICE: Log filtering will replace 'build/rsem-Izdmwu/resolver-isZqT6' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [7920 kB] Fetched 7920 kB in 2s (4381 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'rsem' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/rsem.git Please use: git clone https://salsa.debian.org/med-team/rsem.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.9 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main rsem 1.3.3+dfsg-1 (dsc) [2112 B] Get:2 http://debian.oregonstate.edu/debian unstable/main rsem 1.3.3+dfsg-1 (tar) [275 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main rsem 1.3.3+dfsg-1 (diff) [35.7 MB] Fetched 35.9 MB in 0s (128 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/rsem-Izdmwu/rsem-1.3.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/rsem-Izdmwu' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), zlib1g-dev, libncurses5-dev, libboost-dev, python3:any, help2man, libhts-dev, bowtie | bowtie2, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 12), zlib1g-dev, libncurses5-dev, libboost-dev, python3:any, help2man, libhts-dev, bowtie, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [470 B] Get:5 copy:/<>/apt_archive ./ Packages [537 B] Fetched 1964 B in 0s (75.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bowtie bsdmainutils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libboost-dev:mipsel libboost1.67-dev:mipsel libbrotli1:mipsel libbsd0 libbz2-1.0:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl3-gnutls:mipsel libdb5.3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:mipsel libelf1 libexpat1 libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgcrypt20:mipsel libglib2.0-0 libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgpg-error0:mipsel libgssapi-krb5-2:mipsel libhogweed5:mipsel libhts-dev:mipsel libhts3:mipsel libicu63 libidn2-0:mipsel libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.4-2:mipsel libldap-common liblocale-gettext-perl liblzma-dev:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libmpdec2 libncurses-dev:mipsel libncurses5-dev:mipsel libncurses6:mipsel libncursesw6:mipsel libnettle7:mipsel libnghttp2-14:mipsel libp11-kit0:mipsel libpipeline1 libpsl5:mipsel libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline8 librtmp1:mipsel libsasl2-2:mipsel libsasl2-modules-db:mipsel libsigsegv2 libsqlite3-0 libssh2-1:mipsel libssl1.1 libssl1.1:mipsel libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtbb2 libtinfo6:mipsel libtool libuchardet0 libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db mime-support po-debconf python3 python3-minimal python3.8 python3.8-minimal readline-common sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc bowtie-examples wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mipsel-linux-gnu gcc-9-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:mipsel libboost1.67-doc:mipsel libboost-atomic1.67-dev:mipsel libboost-chrono1.67-dev:mipsel libboost-container1.67-dev:mipsel libboost-context1.67-dev:mipsel libboost-contract1.67-dev:mipsel libboost-coroutine1.67-dev:mipsel libboost-date-time1.67-dev:mipsel libboost-exception1.67-dev:mipsel libboost-fiber1.67-dev:mipsel libboost-filesystem1.67-dev:mipsel libboost-graph1.67-dev:mipsel libboost-graph-parallel1.67-dev:mipsel libboost-iostreams1.67-dev:mipsel libboost-locale1.67-dev:mipsel libboost-log1.67-dev:mipsel libboost-math1.67-dev:mipsel libboost-mpi1.67-dev:mipsel libboost-mpi-python1.67-dev:mipsel libboost-numpy1.67-dev:mipsel libboost-program-options1.67-dev:mipsel libboost-python1.67-dev:mipsel libboost-random1.67-dev:mipsel libboost-regex1.67-dev:mipsel libboost-serialization1.67-dev:mipsel libboost-signals1.67-dev:mipsel libboost-stacktrace1.67-dev:mipsel libboost-system1.67-dev:mipsel libboost-test1.67-dev:mipsel libboost-thread1.67-dev:mipsel libboost-timer1.67-dev:mipsel libboost-type-erasure1.67-dev:mipsel libboost-wave1.67-dev:mipsel libboost1.67-tools-dev:mipsel libmpfrc++-dev:mipsel libntl-dev:mipsel glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel rng-tools:mipsel gnutls-bin:mipsel krb5-doc:mipsel krb5-user:mipsel liblzma-doc:mipsel ncurses-doc:mipsel libstdc++-9-doc libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx ca-certificates:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:mipsel krb5-locales:mipsel libgpm2:mipsel publicsuffix:mipsel libsasl2-modules:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bowtie bsdmainutils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libboost-dev:mipsel libboost1.67-dev:mipsel libbrotli1:mipsel libbsd0 libbz2-1.0:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl3-gnutls:mipsel libdb5.3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:mipsel libelf1 libexpat1 libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgcrypt20:mipsel libglib2.0-0 libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgpg-error0:mipsel libgssapi-krb5-2:mipsel libhogweed5:mipsel libhts-dev:mipsel libhts3:mipsel libicu63 libidn2-0:mipsel libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.4-2:mipsel libldap-common liblocale-gettext-perl liblzma-dev:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libmpdec2 libncurses-dev:mipsel libncurses5-dev:mipsel libncurses6:mipsel libncursesw6:mipsel libnettle7:mipsel libnghttp2-14:mipsel libp11-kit0:mipsel libpipeline1 libpsl5:mipsel libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline8 librtmp1:mipsel libsasl2-2:mipsel libsasl2-modules-db:mipsel libsigsegv2 libsqlite3-0 libssh2-1:mipsel libssl1.1 libssl1.1:mipsel libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtbb2 libtinfo6:mipsel libtool libuchardet0 libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db mime-support po-debconf python3 python3-minimal python3.8 python3.8-minimal readline-common sbuild-build-depends-main-dummy:mipsel sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After this operation, 498 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [964 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-minimal amd64 3.8.3-1 [760 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8-minimal amd64 3.8.3-1 [1943 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.8.2-3 [37.6 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 mime-support all 3.64 [37.8 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec2 amd64 2.4.2-3 [84.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-5 [661 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-stdlib amd64 3.8.3-1 [1668 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8 amd64 3.8.3-1 [416 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.8.2-3 [20.8 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.8.2-3 [63.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10.1.0-1 [196 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.3.0-12 [197 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0039 [68.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.34-5cross6 [2309 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libtbb2 amd64 2020.2-2 [160 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 bowtie amd64 1.2.3+dfsg-4 [1842 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-8 [2631 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-12 [1701 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-12 [10.7 MB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu-base amd64 9.3.0-8cross1 [196 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6465 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:9.2.1-4.1 [16.7 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.3.0-8cross1 [192 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10-20200324-1cross1 [192 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.30-2cross1 [1199 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10-20200324-1cross1 [46.6 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10-20200324-1cross1 [90.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10-20200324-1cross1 [6652 B] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mipsel-cross all 9.3.0-8cross1 [223 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6819 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1460 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10-20200324-1cross1 [395 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.4.19-1cross1 [1166 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.30-2cross1 [2274 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mipsel-cross all 9.3.0-8cross1 [1708 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [7051 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1176 B] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.8 [6684 B] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.1 [187 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.0-1 [14.8 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.2-1 [1343 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.1 [1012 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.15 [181 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10.1.0-1 [46.1 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.16-1 [113 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.30-8 [2422 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10.1.0-1 [6712 B] Get:101 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10.1.0-1 [92.3 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.3.0-12 [222 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10.1.0-1 [435 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.6.7-1 [1092 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.16-1 [134 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.30-8 [2271 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.3.0-12 [1717 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mipsel libboost1.67-dev mipsel 1.67.0-18 [8389 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-dev mipsel 1.67.0.2+b1 [4488 B] Get:110 http://debian.oregonstate.edu/debian unstable/main mipsel libbrotli1 mipsel 1.0.7-6.1 [268 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-1.0 mipsel 1.0.8-2 [45.9 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main mipsel libcom-err2 mipsel 1.45.6-1 [71.4 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mipsel libgmp10 mipsel 2:6.2.0+dfsg-4 [225 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main mipsel libnettle7 mipsel 3.5.1+really3.5.1-2 [247 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mipsel libhogweed5 mipsel 3.5.1+really3.5.1-2 [130 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main mipsel libunistring2 mipsel 0.9.10-2 [360 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mipsel libidn2-0 mipsel 2.3.0-1 [84.5 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main mipsel libffi7 mipsel 3.3-4 [20.1 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main mipsel libp11-kit0 mipsel 0.23.20-1 [276 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mipsel libtasn1-6 mipsel 4.16.0-2 [53.4 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mipsel libgnutls30 mipsel 3.6.13-2 [1083 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5support0 mipsel 1.17-7 [63.7 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main mipsel libk5crypto3 mipsel 1.17-7 [119 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main mipsel libkeyutils1 mipsel 1.6.1-2 [14.9 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main mipsel libssl1.1 mipsel 1.1.1g-1 [1186 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5-3 mipsel 1.17-7 [339 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main mipsel libgssapi-krb5-2 mipsel 1.17-7 [141 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main mipsel libdb5.3 mipsel 5.3.28+dfsg1-0.6 [598 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main mipsel libsasl2-modules-db mipsel 2.1.27+dfsg-2 [68.2 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main mipsel libsasl2-2 mipsel 2.1.27+dfsg-2 [101 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.50+dfsg-1 [92.9 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main mipsel libldap-2.4-2 mipsel 2.4.50+dfsg-1 [207 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main mipsel libnghttp2-14 mipsel 1.40.0-1 [82.3 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main mipsel libpsl5 mipsel 0.21.0-1 [54.8 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-2 [88.2 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main mipsel librtmp1 mipsel 2.4+20151223.gitfa8646d.1-2+b1 [55.7 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main mipsel libgpg-error0 mipsel 1.37-1 [69.5 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main mipsel libgcrypt20 mipsel 1.8.5-5 [538 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main mipsel libssh2-1 mipsel 1.8.0-2.1 [134 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main mipsel libcurl3-gnutls mipsel 7.68.0-1 [302 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main mipsel libdeflate0 mipsel 1.6-1 [49.3 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main mipsel liblzma5 mipsel 5.2.4-1+b1 [153 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main mipsel libhts3 mipsel 1.10.2-3 [359 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main mipsel liblzma-dev mipsel 5.2.4-1+b1 [215 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-2 [190 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main mipsel libhts-dev mipsel 1.10.2-3 [4798 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main mipsel libtinfo6 mipsel 6.2-1 [326 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main mipsel libncurses6 mipsel 6.2-1 [87.2 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main mipsel libncursesw6 mipsel 6.2-1 [116 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main mipsel libncurses-dev mipsel 6.2-1 [343 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main mipsel libncurses5-dev mipsel 6.2-1 [932 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 107 MB in 1s (78.4 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12640 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../06-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../07-libssl1.1_1.1.1g-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1g-1) ... Selecting previously unselected package libpython3.8-minimal:amd64. Preparing to unpack .../08-libpython3.8-minimal_3.8.3-1_amd64.deb ... Unpacking libpython3.8-minimal:amd64 (3.8.3-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../09-libexpat1_2.2.9-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../10-python3.8-minimal_3.8.3-1_amd64.deb ... Unpacking python3.8-minimal (3.8.3-1) ... Setting up libssl1.1:amd64 (1.1.1g-1) ... Setting up libpython3.8-minimal:amd64 (3.8.3-1) ... Setting up libexpat1:amd64 (2.2.9-1) ... Setting up python3.8-minimal (3.8.3-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13609 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.2-3_amd64.deb ... Unpacking python3-minimal (3.8.2-3) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.64_all.deb ... Unpacking mime-support (3.64) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../2-libmpdec2_2.4.2-3_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../4-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../5-libsqlite3-0_3.31.1-5_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.31.1-5) ... Selecting previously unselected package libpython3.8-stdlib:amd64. Preparing to unpack .../6-libpython3.8-stdlib_3.8.3-1_amd64.deb ... Unpacking libpython3.8-stdlib:amd64 (3.8.3-1) ... Selecting previously unselected package python3.8. Preparing to unpack .../7-python3.8_3.8.3-1_amd64.deb ... Unpacking python3.8 (3.8.3-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.8.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.8.2-3) ... Setting up python3-minimal (3.8.2-3) ... Selecting previously unselected package python3. (Reading database ... 14043 files and directories currently installed.) Preparing to unpack .../000-python3_3.8.2-3_amd64.deb ... Unpacking python3 (3.8.2-3) ... Selecting previously unselected package gcc-10-base:mipsel. Preparing to unpack .../001-gcc-10-base_10.1.0-1_mipsel.deb ... Unpacking gcc-10-base:mipsel (10.1.0-1) ... Selecting previously unselected package gcc-9-base:mipsel. Preparing to unpack .../002-gcc-9-base_9.3.0-12_mipsel.deb ... Unpacking gcc-9-base:mipsel (9.3.0-12) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.38-5_amd64.deb ... Unpacking libmagic-mgc (1:5.38-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.38-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-5) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.38-5_amd64.deb ... Unpacking file (1:5.38-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../008-ucf_3.0039_all.deb ... Moving old data out of the way Unpacking ucf (3.0039) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../009-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.2-1_all.deb ... Unpacking automake (1:1.16.2-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-mipsel-linux-gnu. Preparing to unpack .../015-binutils-mipsel-linux-gnu_2.34-5cross6_amd64.deb ... Unpacking binutils-mipsel-linux-gnu (2.34-5cross6) ... Selecting previously unselected package libtbb2:amd64. Preparing to unpack .../016-libtbb2_2020.2-2_amd64.deb ... Unpacking libtbb2:amd64 (2020.2-2) ... Selecting previously unselected package bowtie. Preparing to unpack .../017-bowtie_1.2.3+dfsg-4_amd64.deb ... Unpacking bowtie (1.2.3+dfsg-4) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../018-libcrypt-dev_1%3a4.4.16-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.16-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../019-libc6-dev_2.30-8_amd64.deb ... Unpacking libc6-dev:amd64 (2.30-8) ... Selecting previously unselected package libstdc++-9-dev:amd64. Preparing to unpack .../020-libstdc++-9-dev_9.3.0-12_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.3.0-12) ... Selecting previously unselected package g++-9. Preparing to unpack .../021-g++-9_9.3.0-12_amd64.deb ... Unpacking g++-9 (9.3.0-12) ... Selecting previously unselected package g++. Preparing to unpack .../022-g++_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++ (4:9.2.1-3.1) ... Selecting previously unselected package build-essential. Preparing to unpack .../023-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-9-mipsel-linux-gnu-base:amd64. Preparing to unpack .../024-gcc-9-mipsel-linux-gnu-base_9.3.0-8cross1_amd64.deb ... Unpacking gcc-9-mipsel-linux-gnu-base:amd64 (9.3.0-8cross1) ... Selecting previously unselected package cpp-9-mipsel-linux-gnu. Preparing to unpack .../025-cpp-9-mipsel-linux-gnu_9.3.0-8cross1_amd64.deb ... Unpacking cpp-9-mipsel-linux-gnu (9.3.0-8cross1) ... Selecting previously unselected package cpp-mipsel-linux-gnu. Preparing to unpack .../026-cpp-mipsel-linux-gnu_4%3a9.2.1-4.1_amd64.deb ... Unpacking cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Selecting previously unselected package cross-config. Preparing to unpack .../027-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base-mipsen. Preparing to unpack .../028-gcc-9-cross-base-mipsen_9.3.0-8cross1_all.deb ... Unpacking gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Selecting previously unselected package gcc-10-cross-base-mipsen. Preparing to unpack .../029-gcc-10-cross-base-mipsen_10-20200324-1cross1_all.deb ... Unpacking gcc-10-cross-base-mipsen (10-20200324-1cross1) ... Selecting previously unselected package libc6-mipsel-cross. Preparing to unpack .../030-libc6-mipsel-cross_2.30-2cross1_all.deb ... Unpacking libc6-mipsel-cross (2.30-2cross1) ... Selecting previously unselected package libgcc-s1-mipsel-cross. Preparing to unpack .../031-libgcc-s1-mipsel-cross_10-20200324-1cross1_all.deb ... Unpacking libgcc-s1-mipsel-cross (10-20200324-1cross1) ... Selecting previously unselected package libgomp1-mipsel-cross. Preparing to unpack .../032-libgomp1-mipsel-cross_10-20200324-1cross1_all.deb ... Unpacking libgomp1-mipsel-cross (10-20200324-1cross1) ... Selecting previously unselected package libatomic1-mipsel-cross. Preparing to unpack .../033-libatomic1-mipsel-cross_10-20200324-1cross1_all.deb ... Unpacking libatomic1-mipsel-cross (10-20200324-1cross1) ... Selecting previously unselected package libgcc-9-dev-mipsel-cross. Preparing to unpack .../034-libgcc-9-dev-mipsel-cross_9.3.0-8cross1_all.deb ... Unpacking libgcc-9-dev-mipsel-cross (9.3.0-8cross1) ... Selecting previously unselected package gcc-9-mipsel-linux-gnu. Preparing to unpack .../035-gcc-9-mipsel-linux-gnu_9.3.0-8cross1_amd64.deb ... Unpacking gcc-9-mipsel-linux-gnu (9.3.0-8cross1) ... Selecting previously unselected package gcc-mipsel-linux-gnu. Preparing to unpack .../036-gcc-mipsel-linux-gnu_4%3a9.2.1-4.1_amd64.deb ... Unpacking gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Selecting previously unselected package libstdc++6-mipsel-cross. Preparing to unpack .../037-libstdc++6-mipsel-cross_10-20200324-1cross1_all.deb ... Unpacking libstdc++6-mipsel-cross (10-20200324-1cross1) ... Selecting previously unselected package linux-libc-dev-mipsel-cross. Preparing to unpack .../038-linux-libc-dev-mipsel-cross_5.4.19-1cross1_all.deb ... Unpacking linux-libc-dev-mipsel-cross (5.4.19-1cross1) ... Selecting previously unselected package libc6-dev-mipsel-cross. Preparing to unpack .../039-libc6-dev-mipsel-cross_2.30-2cross1_all.deb ... Unpacking libc6-dev-mipsel-cross (2.30-2cross1) ... Selecting previously unselected package libstdc++-9-dev-mipsel-cross. Preparing to unpack .../040-libstdc++-9-dev-mipsel-cross_9.3.0-8cross1_all.deb ... Unpacking libstdc++-9-dev-mipsel-cross (9.3.0-8cross1) ... Selecting previously unselected package g++-9-mipsel-linux-gnu. Preparing to unpack .../041-g++-9-mipsel-linux-gnu_9.3.0-8cross1_amd64.deb ... Unpacking g++-9-mipsel-linux-gnu (9.3.0-8cross1) ... Selecting previously unselected package g++-mipsel-linux-gnu. Preparing to unpack .../042-g++-mipsel-linux-gnu_4%3a9.2.1-4.1_amd64.deb ... Unpacking g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../043-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../044-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../045-libicu63_63.2-3_amd64.deb ... Unpacking libicu63:amd64 (63.2-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../046-libxml2_2.9.10+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-5) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../047-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../048-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../049-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../050-libxml-libxml-perl_2.0134+dfsg-2_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../051-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../052-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../053-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../054-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../055-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../056-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../057-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-mipsel. Preparing to unpack .../058-crossbuild-essential-mipsel_12.8_all.deb ... Unpacking crossbuild-essential-mipsel (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../059-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../060-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../061-libdebhelper-perl_13.1_all.deb ... Unpacking libdebhelper-perl (13.1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../062-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../063-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../064-libfile-stripnondeterminism-perl_1.8.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.8.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../065-dh-strip-nondeterminism_1.8.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.8.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../066-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../067-dwz_0.13-5_amd64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../068-libglib2.0-0_2.64.2-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.64.2-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../069-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../070-gettext_0.19.8.1-10_amd64.deb ... Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../071-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../072-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../073-debhelper_13.1_all.deb ... Unpacking debhelper (13.1) ... Selecting previously unselected package help2man. Preparing to unpack .../074-help2man_1.47.15_amd64.deb ... Unpacking help2man (1.47.15) ... Selecting previously unselected package libgcc-s1:mipsel. Preparing to unpack .../075-libgcc-s1_10.1.0-1_mipsel.deb ... Unpacking libgcc-s1:mipsel (10.1.0-1) ... Selecting previously unselected package libcrypt1:mipsel. Preparing to unpack .../076-libcrypt1_1%3a4.4.16-1_mipsel.deb ... Unpacking libcrypt1:mipsel (1:4.4.16-1) ... Selecting previously unselected package libc6:mipsel. Preparing to unpack .../077-libc6_2.30-8_mipsel.deb ... Unpacking libc6:mipsel (2.30-8) ... Selecting previously unselected package libatomic1:mipsel. Preparing to unpack .../078-libatomic1_10.1.0-1_mipsel.deb ... Unpacking libatomic1:mipsel (10.1.0-1) ... Selecting previously unselected package libgomp1:mipsel. Preparing to unpack .../079-libgomp1_10.1.0-1_mipsel.deb ... Unpacking libgomp1:mipsel (10.1.0-1) ... Selecting previously unselected package libgcc-9-dev:mipsel. Preparing to unpack .../080-libgcc-9-dev_9.3.0-12_mipsel.deb ... Unpacking libgcc-9-dev:mipsel (9.3.0-12) ... Selecting previously unselected package libstdc++6:mipsel. Preparing to unpack .../081-libstdc++6_10.1.0-1_mipsel.deb ... Unpacking libstdc++6:mipsel (10.1.0-1) ... Selecting previously unselected package linux-libc-dev:mipsel. Preparing to unpack .../082-linux-libc-dev_5.6.7-1_mipsel.deb ... Unpacking linux-libc-dev:mipsel (5.6.7-1) ... Selecting previously unselected package libcrypt-dev:mipsel. Preparing to unpack .../083-libcrypt-dev_1%3a4.4.16-1_mipsel.deb ... Unpacking libcrypt-dev:mipsel (1:4.4.16-1) ... Selecting previously unselected package libc6-dev:mipsel. Preparing to unpack .../084-libc6-dev_2.30-8_mipsel.deb ... Unpacking libc6-dev:mipsel (2.30-8) ... Selecting previously unselected package libstdc++-9-dev:mipsel. Preparing to unpack .../085-libstdc++-9-dev_9.3.0-12_mipsel.deb ... Unpacking libstdc++-9-dev:mipsel (9.3.0-12) ... Selecting previously unselected package libboost1.67-dev:mipsel. Preparing to unpack .../086-libboost1.67-dev_1.67.0-18_mipsel.deb ... Unpacking libboost1.67-dev:mipsel (1.67.0-18) ... Selecting previously unselected package libboost-dev:mipsel. Preparing to unpack .../087-libboost-dev_1.67.0.2+b1_mipsel.deb ... Unpacking libboost-dev:mipsel (1.67.0.2+b1) ... Selecting previously unselected package libbrotli1:mipsel. Preparing to unpack .../088-libbrotli1_1.0.7-6.1_mipsel.deb ... Unpacking libbrotli1:mipsel (1.0.7-6.1) ... Selecting previously unselected package libbz2-1.0:mipsel. Preparing to unpack .../089-libbz2-1.0_1.0.8-2_mipsel.deb ... Unpacking libbz2-1.0:mipsel (1.0.8-2) ... Selecting previously unselected package libcom-err2:mipsel. Preparing to unpack .../090-libcom-err2_1.45.6-1_mipsel.deb ... Unpacking libcom-err2:mipsel (1.45.6-1) ... Selecting previously unselected package libgmp10:mipsel. Preparing to unpack .../091-libgmp10_2%3a6.2.0+dfsg-4_mipsel.deb ... Unpacking libgmp10:mipsel (2:6.2.0+dfsg-4) ... Selecting previously unselected package libnettle7:mipsel. Preparing to unpack .../092-libnettle7_3.5.1+really3.5.1-2_mipsel.deb ... Unpacking libnettle7:mipsel (3.5.1+really3.5.1-2) ... Selecting previously unselected package libhogweed5:mipsel. Preparing to unpack .../093-libhogweed5_3.5.1+really3.5.1-2_mipsel.deb ... Unpacking libhogweed5:mipsel (3.5.1+really3.5.1-2) ... Selecting previously unselected package libunistring2:mipsel. Preparing to unpack .../094-libunistring2_0.9.10-2_mipsel.deb ... Unpacking libunistring2:mipsel (0.9.10-2) ... Selecting previously unselected package libidn2-0:mipsel. Preparing to unpack .../095-libidn2-0_2.3.0-1_mipsel.deb ... Unpacking libidn2-0:mipsel (2.3.0-1) ... Selecting previously unselected package libffi7:mipsel. Preparing to unpack .../096-libffi7_3.3-4_mipsel.deb ... Unpacking libffi7:mipsel (3.3-4) ... Selecting previously unselected package libp11-kit0:mipsel. Preparing to unpack .../097-libp11-kit0_0.23.20-1_mipsel.deb ... Unpacking libp11-kit0:mipsel (0.23.20-1) ... Selecting previously unselected package libtasn1-6:mipsel. Preparing to unpack .../098-libtasn1-6_4.16.0-2_mipsel.deb ... Unpacking libtasn1-6:mipsel (4.16.0-2) ... Selecting previously unselected package libgnutls30:mipsel. Preparing to unpack .../099-libgnutls30_3.6.13-2_mipsel.deb ... Unpacking libgnutls30:mipsel (3.6.13-2) ... Selecting previously unselected package libkrb5support0:mipsel. Preparing to unpack .../100-libkrb5support0_1.17-7_mipsel.deb ... Unpacking libkrb5support0:mipsel (1.17-7) ... Selecting previously unselected package libk5crypto3:mipsel. Preparing to unpack .../101-libk5crypto3_1.17-7_mipsel.deb ... Unpacking libk5crypto3:mipsel (1.17-7) ... Selecting previously unselected package libkeyutils1:mipsel. Preparing to unpack .../102-libkeyutils1_1.6.1-2_mipsel.deb ... Unpacking libkeyutils1:mipsel (1.6.1-2) ... Selecting previously unselected package libssl1.1:mipsel. Preparing to unpack .../103-libssl1.1_1.1.1g-1_mipsel.deb ... Unpacking libssl1.1:mipsel (1.1.1g-1) ... Selecting previously unselected package libkrb5-3:mipsel. Preparing to unpack .../104-libkrb5-3_1.17-7_mipsel.deb ... Unpacking libkrb5-3:mipsel (1.17-7) ... Selecting previously unselected package libgssapi-krb5-2:mipsel. Preparing to unpack .../105-libgssapi-krb5-2_1.17-7_mipsel.deb ... Unpacking libgssapi-krb5-2:mipsel (1.17-7) ... Selecting previously unselected package libdb5.3:mipsel. Preparing to unpack .../106-libdb5.3_5.3.28+dfsg1-0.6_mipsel.deb ... Unpacking libdb5.3:mipsel (5.3.28+dfsg1-0.6) ... Selecting previously unselected package libsasl2-modules-db:mipsel. Preparing to unpack .../107-libsasl2-modules-db_2.1.27+dfsg-2_mipsel.deb ... Unpacking libsasl2-modules-db:mipsel (2.1.27+dfsg-2) ... Selecting previously unselected package libsasl2-2:mipsel. Preparing to unpack .../108-libsasl2-2_2.1.27+dfsg-2_mipsel.deb ... Unpacking libsasl2-2:mipsel (2.1.27+dfsg-2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../109-libldap-common_2.4.50+dfsg-1_all.deb ... Unpacking libldap-common (2.4.50+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:mipsel. Preparing to unpack .../110-libldap-2.4-2_2.4.50+dfsg-1_mipsel.deb ... Unpacking libldap-2.4-2:mipsel (2.4.50+dfsg-1) ... Selecting previously unselected package libnghttp2-14:mipsel. Preparing to unpack .../111-libnghttp2-14_1.40.0-1_mipsel.deb ... Unpacking libnghttp2-14:mipsel (1.40.0-1) ... Selecting previously unselected package libpsl5:mipsel. Preparing to unpack .../112-libpsl5_0.21.0-1_mipsel.deb ... Unpacking libpsl5:mipsel (0.21.0-1) ... Selecting previously unselected package zlib1g:mipsel. Preparing to unpack .../113-zlib1g_1%3a1.2.11.dfsg-2_mipsel.deb ... Unpacking zlib1g:mipsel (1:1.2.11.dfsg-2) ... Selecting previously unselected package librtmp1:mipsel. Preparing to unpack .../114-librtmp1_2.4+20151223.gitfa8646d.1-2+b1_mipsel.deb ... Unpacking librtmp1:mipsel (2.4+20151223.gitfa8646d.1-2+b1) ... Selecting previously unselected package libgpg-error0:mipsel. Preparing to unpack .../115-libgpg-error0_1.37-1_mipsel.deb ... Unpacking libgpg-error0:mipsel (1.37-1) ... Selecting previously unselected package libgcrypt20:mipsel. Preparing to unpack .../116-libgcrypt20_1.8.5-5_mipsel.deb ... Unpacking libgcrypt20:mipsel (1.8.5-5) ... Selecting previously unselected package libssh2-1:mipsel. Preparing to unpack .../117-libssh2-1_1.8.0-2.1_mipsel.deb ... Unpacking libssh2-1:mipsel (1.8.0-2.1) ... Selecting previously unselected package libcurl3-gnutls:mipsel. Preparing to unpack .../118-libcurl3-gnutls_7.68.0-1_mipsel.deb ... Unpacking libcurl3-gnutls:mipsel (7.68.0-1) ... Selecting previously unselected package libdeflate0:mipsel. Preparing to unpack .../119-libdeflate0_1.6-1_mipsel.deb ... Unpacking libdeflate0:mipsel (1.6-1) ... Selecting previously unselected package liblzma5:mipsel. Preparing to unpack .../120-liblzma5_5.2.4-1+b1_mipsel.deb ... Unpacking liblzma5:mipsel (5.2.4-1+b1) ... Selecting previously unselected package libhts3:mipsel. Preparing to unpack .../121-libhts3_1.10.2-3_mipsel.deb ... Unpacking libhts3:mipsel (1.10.2-3) ... Selecting previously unselected package liblzma-dev:mipsel. Preparing to unpack .../122-liblzma-dev_5.2.4-1+b1_mipsel.deb ... Unpacking liblzma-dev:mipsel (5.2.4-1+b1) ... Selecting previously unselected package zlib1g-dev:mipsel. Preparing to unpack .../123-zlib1g-dev_1%3a1.2.11.dfsg-2_mipsel.deb ... Unpacking zlib1g-dev:mipsel (1:1.2.11.dfsg-2) ... Selecting previously unselected package libhts-dev:mipsel. Preparing to unpack .../124-libhts-dev_1.10.2-3_mipsel.deb ... Unpacking libhts-dev:mipsel (1.10.2-3) ... Selecting previously unselected package libtinfo6:mipsel. Preparing to unpack .../125-libtinfo6_6.2-1_mipsel.deb ... Unpacking libtinfo6:mipsel (6.2-1) ... Selecting previously unselected package libncurses6:mipsel. Preparing to unpack .../126-libncurses6_6.2-1_mipsel.deb ... Unpacking libncurses6:mipsel (6.2-1) ... Selecting previously unselected package libncursesw6:mipsel. Preparing to unpack .../127-libncursesw6_6.2-1_mipsel.deb ... Unpacking libncursesw6:mipsel (6.2-1) ... Selecting previously unselected package libncurses-dev:mipsel. Preparing to unpack .../128-libncurses-dev_6.2-1_mipsel.deb ... Unpacking libncurses-dev:mipsel (6.2-1) ... Selecting previously unselected package libncurses5-dev:mipsel. Preparing to unpack .../129-libncurses5-dev_6.2-1_mipsel.deb ... Unpacking libncurses5-dev:mipsel (6.2-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:mipsel. Preparing to unpack .../130-sbuild-build-depends-main-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up mime-support (3.64) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.64.2-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.1) ... Setting up libsqlite3-0:amd64 (3.31.1-5) ... Setting up libtbb2:amd64 (2020.2-2) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:mipsel (5.6.7-1) ... Setting up libc6-mipsel-cross (2.30-2cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Setting up gcc-9-mipsel-linux-gnu-base:amd64 (9.3.0-8cross1) ... Setting up libldap-common (2.4.50+dfsg-1) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:mipsel (10.1.0-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-10-cross-base-mipsen (10-20200324-1cross1) ... Setting up binutils-mipsel-linux-gnu (2.34-5cross6) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libgomp1-mipsel-cross (10-20200324-1cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up cpp-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up linux-libc-dev-mipsel-cross (5.4.19-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-8) ... Setting up libmpdec2:amd64 (2.4.2-3) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-4) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:mipsel (9.3.0-12) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-12) ... Setting up libc6-dev-mipsel-cross (2.30-2cross1) ... Setting up libtool (2.4.6-14) ... Setting up libgcc-s1-mipsel-cross (10-20200324-1cross1) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-mipsel-cross (10-20200324-1cross1) ... Setting up help2man (1.47.15) ... Setting up libgcc-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0039) ... Setting up g++-9 (9.3.0-12) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up build-essential (12.8) ... Setting up libpython3.8-stdlib:amd64 (3.8.3-1) ... Setting up python3.8 (3.8.3-1) ... Setting up libpython3-stdlib:amd64 (3.8.2-3) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gcc-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up gettext (0.19.8.1-10) ... Setting up libstdc++6-mipsel-cross (10-20200324-1cross1) ... Setting up python3 (3.8.2-3) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up bowtie (1.2.3+dfsg-4) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.8) ... Setting up libcrypt1:mipsel (1:4.4.16-1) ... Setting up libgcc-s1:mipsel (10.1.0-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:mipsel (2.30-8) ... Setting up libnettle7:mipsel (3.5.1+really3.5.1-2) ... Setting up libcrypt-dev:mipsel (1:4.4.16-1) ... Setting up libtasn1-6:mipsel (4.16.0-2) ... Setting up libc6-dev:mipsel (2.30-8) ... Setting up libbz2-1.0:mipsel (1.0.8-2) ... Setting up libdb5.3:mipsel (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:mipsel (10.1.0-1) ... Setting up libtinfo6:mipsel (6.2-1) ... Setting up libkeyutils1:mipsel (1.6.1-2) ... Setting up liblzma5:mipsel (5.2.4-1+b1) ... Setting up libgpg-error0:mipsel (1.37-1) ... Setting up libssl1.1:mipsel (1.1.1g-1) ... Setting up libbrotli1:mipsel (1.0.7-6.1) ... Setting up libffi7:mipsel (3.3-4) ... Setting up libnghttp2-14:mipsel (1.40.0-1) ... Setting up libunistring2:mipsel (0.9.10-2) ... Setting up libdeflate0:mipsel (1.6-1) ... Setting up libgcrypt20:mipsel (1.8.5-5) ... Setting up debhelper (13.1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-2) ... Setting up libidn2-0:mipsel (2.3.0-1) ... Setting up libcom-err2:mipsel (1.45.6-1) ... Setting up libgomp1:mipsel (10.1.0-1) ... Setting up libkrb5support0:mipsel (1.17-7) ... Setting up libsasl2-modules-db:mipsel (2.1.27+dfsg-2) ... Setting up libgmp10:mipsel (2:6.2.0+dfsg-4) ... Setting up libncurses6:mipsel (6.2-1) ... Setting up libp11-kit0:mipsel (0.23.20-1) ... Setting up libatomic1:mipsel (10.1.0-1) ... Setting up libncursesw6:mipsel (6.2-1) ... Setting up libk5crypto3:mipsel (1.17-7) ... Setting up libsasl2-2:mipsel (2.1.27+dfsg-2) ... Setting up liblzma-dev:mipsel (5.2.4-1+b1) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-2) ... Setting up libssh2-1:mipsel (1.8.0-2.1) ... Setting up libkrb5-3:mipsel (1.17-7) ... Setting up libncurses-dev:mipsel (6.2-1) ... Setting up libpsl5:mipsel (0.21.0-1) ... Setting up libhogweed5:mipsel (3.5.1+really3.5.1-2) ... Setting up libgcc-9-dev:mipsel (9.3.0-12) ... Setting up libgnutls30:mipsel (3.6.13-2) ... Setting up librtmp1:mipsel (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libgssapi-krb5-2:mipsel (1.17-7) ... Setting up libncurses5-dev:mipsel (6.2-1) ... Setting up libstdc++-9-dev:mipsel (9.3.0-12) ... Setting up libldap-2.4-2:mipsel (2.4.50+dfsg-1) ... Setting up libcurl3-gnutls:mipsel (7.68.0-1) ... Setting up libboost1.67-dev:mipsel (1.67.0-18) ... Setting up libhts3:mipsel (1.10.2-3) ... Setting up libhts-dev:mipsel (1.10.2-3) ... Setting up libboost-dev:mipsel (1.67.0.2+b1) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.30-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-8 dpkg-dev_1.19.7 g++-9_9.3.0-12 gcc-9_9.3.0-12 libc6-dev_2.30-8 libstdc++-9-dev_9.3.0-12 libstdc++-9-dev-mipsel-cross_9.3.0-8cross1 libstdc++6_10.1.0-1 libstdc++6-mipsel-cross_10-20200324-1cross1 linux-libc-dev_5.6.7-1 Package versions: adduser_3.118 apt_2.1.3 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8 binutils-common_2.34-8 binutils-mipsel-linux-gnu_2.34-5cross6 binutils-x86-64-linux-gnu_2.34-8 bowtie_1.2.3+dfsg-4 bsdmainutils_11.1.2+b1 bsdutils_1:2.35.1-5 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-3 cpp-9_9.3.0-12 cpp-9-mipsel-linux-gnu_9.3.0-8cross1 cpp-mipsel-linux-gnu_4:9.2.1-4.1 cross-config_2.6.15-3 crossbuild-essential-mipsel_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-5 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-12 g++-9-mipsel-linux-gnu_9.3.0-8cross1 g++-mipsel-linux-gnu_4:9.2.1-4.1 gcc_4:9.2.1-3.1 gcc-10-base_10.1.0-1 gcc-10-cross-base-mipsen_10-20200324-1cross1 gcc-8-base_8.4.0-3 gcc-9_9.3.0-12 gcc-9-base_9.3.0-12 gcc-9-cross-base-mipsen_9.3.0-8cross1 gcc-9-mipsel-linux-gnu_9.3.0-8cross1 gcc-9-mipsel-linux-gnu-base_9.3.0-8cross1 gcc-mipsel-linux-gnu_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.15 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.3 libarchive-zip-perl_1.68-1 libasan5_9.3.0-12 libatomic1_10.1.0-1 libatomic1-mipsel-cross_10-20200324-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34-8 libblkid1_2.35.1-5 libboost-dev_1.67.0.2+b1 libboost1.67-dev_1.67.0-18 libbrotli1_1.0.7-6.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-8 libc-dev-bin_2.30-8 libc6_2.30-8 libc6-dev_2.30-8 libc6-dev-mipsel-cross_2.30-2cross1 libc6-mipsel-cross_2.30-2cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10.1.0-1 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8 libctf0_2.34-8 libcurl3-gnutls_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.6-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.1-5 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.8.0-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-12 libgcc-9-dev-mipsel-cross_9.3.0-8cross1 libgcc-s1_10.1.0-1 libgcc-s1-mipsel-cross_10-20200324-1cross1 libgcc1_1:10.1.0-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10.1.0-1 libgomp1-mipsel-cross_10-20200324-1cross1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-3 libhts3_1.10.2-3 libicu63_63.2-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.1.0-1 libk5crypto3_1.17-7 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7 libkrb5support0_1.17-7 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblocale-gettext-perl_1.07-4 liblsan0_10.1.0-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.1-5 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libmpx2_8.4.0-3 libncurses-dev_6.2-1 libncurses5-dev_6.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.2-1 libpipeline1_1.5.2-2 libpsl5_0.21.0-1 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.3-1 libpython3.8-stdlib_3.8.3-1 libquadmath0_10.1.0-1 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+b1 libselinux1_3.0-1+b3 libsemanage-common_3.0-1 libsemanage1_3.0-1+b3 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.1-5 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-12 libstdc++-9-dev-mipsel-cross_9.3.0-8cross1 libstdc++6_10.1.0-1 libstdc++6-mipsel-cross_10-20200324-1cross1 libsub-override-perl_0.09-2 libsystemd0_245.5-3 libtasn1-6_4.16.0-2 libtbb2_2020.2-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-1 libubsan1_10.1.0-1 libuchardet0_0.0.6-3 libudev1_245.5-3 libunistring2_0.9.10-2 libuuid1_2.35.1-5 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.6.7-1 linux-libc-dev-mipsel-cross_5.4.19-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-2+b1 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.35.1-5 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.2-1 perl-base_5.30.2-1 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.2-1 po-debconf_1.0.21 python3_3.8.2-3 python3-minimal_3.8.2-3 python3.8_3.8.3-1 python3.8-minimal_3.8.3-1 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0039 util-linux_2.35.1-5 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: rsem Binary: rsem Architecture: any Version: 1.3.3+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: http://deweylab.github.io/RSEM/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/rsem Vcs-Git: https://salsa.debian.org/med-team/rsem.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), zlib1g-dev, libncurses5-dev, libboost-dev, perl , python3:any, help2man, libhts-dev, hisat2 , bowtie | bowtie2 Package-List: rsem deb science optional arch=any Checksums-Sha1: 5565e925e1efe216153215392b623d655ab513bf 275380 rsem_1.3.3+dfsg.orig.tar.xz 0c32288d6603a72cdb1e6301d44d14869d857c1f 35659880 rsem_1.3.3+dfsg-1.debian.tar.xz Checksums-Sha256: 43037765382f8942a03595eb12ee2ed68081f9f828cb2832388354a12ee00990 275380 rsem_1.3.3+dfsg.orig.tar.xz a4c9fefd0bd541134a2f3a9c66fe099433fbca1588fae11fe14c961ce1a5707d 35659880 rsem_1.3.3+dfsg-1.debian.tar.xz Files: 59bba49e9d7bba287320c5125d84e8bd 275380 rsem_1.3.3+dfsg.orig.tar.xz 6ba31edf0b64982192ef58980257a171 35659880 rsem_1.3.3+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl5KuVAACgkQPCZ2P2xn 5uKNtBAAqHZ17CVSo+dpCUUgcIzjkZdaIHhQcn8fiQT/9Fsph/7DkUC53KoIJBSZ iaXYqlXmKH4PfqUFB9/SiXezTgDsT2oEKqsMCVx80w6f/8QxwfDUsBbvhALz/huI bGJBDEBzCS4l4yHCpdv3QLCWF1fAcE0XsqlU3GDJeH55pMGNcWUmGFcCUwUH5IWj /AuEZHPFfbs5Aa7MqM1Mrsf3n4pQGr80rm7SVfqtTZpsi17gyxtLbJtTW4pHa46c WbuGUhzIFyGaeO8RzoNOApDEulVBJCgyijUIqXgBAL6q4cHgkLypKI3ksP4pVy9c G7DRsLx8JN4toeQ42L8F5V3MYL6uVq3LWx85dvt4bTUbanMhqNAUzMtX7t2ttBAy ru0yQV1Lsv3hODozM9Yy2abfGB65FH/9LsR7dAW8E3ToSSarDKtyyaOi/UUid7Y9 iILIuAxmtjnmoEN0VcIAIiNG4U+uEfNOicYuHvS9GhDdIZUl1s/gJvM9feicr6JK kZMNNtas8SPiwnyiL/nYrlfxe3OBbhRCPbmuIaYiKiRlUJfmYBxLuwSMLwdHiqZk j71bRrgr8T7TBqHF+nMcjNZr4Tn6A9JOrpkyk7yc0eynEpH9ZzB5i4Yv1hpFCdOW 8d1Ip9mqiQGygYAqppMVDNj1/JtQd+pd3eTpjnrTfQOCnDGmB24= =8l/J -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Feb 17 16:03:28 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rsem_1.3.3+dfsg-1.dsc dpkg-source: info: extracting rsem in /<> dpkg-source: info: unpacking rsem_1.3.3+dfsg.orig.tar.xz dpkg-source: info: unpacking rsem_1.3.3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening dpkg-source: info: applying use_debian_packaged_samtools.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-37f723f3-5c1e-4e57-a77e-c08c1fc16d98 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package rsem dpkg-buildpackage: info: source version 1.3.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f *.o *~ rsem-extract-reference-transcripts rsem-synthesis-reference-transcripts rsem-preref rsem-build-read-index rsem-simulate-reads rsem-parse-alignments rsem-run-em rsem-tbam2gbam rsem-bam2wig rsem-bam2readdepth rsem-get-unique rsem-sam-validator rsem-scan-for-paired-end-reads rsem-run-gibbs rsem-calculate-credibility-intervals cd EBSeq && make clean make[2]: Entering directory '/<>/EBSeq' rm -rf EBSeq rsem-for-ebseq-calculate-clustering-info blockmodeling gplots gtools gdata caTools bitops KernSmooth BiocInstaller *~ make[2]: Leaving directory '/<>/EBSeq' cd pRSEM && make clean make[2]: Entering directory '/<>/pRSEM' rm -fr bigWigSummary RLib filterSam2Bed *.pyc make[2]: Leaving directory '/<>/pRSEM' make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- BOOST=/usr/include prefix=debian/tmp make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mipsel-linux-gnu-pkg-config CXX=mipsel-linux-gnu-g\+\+ CC=mipsel-linux-gnu-gcc BOOST=/usr/include prefix=debian/tmp make[2]: Entering directory '/<>' mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o extractRef.o extractRef.cpp mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -o rsem-extract-reference-transcripts extractRef.o mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o synthesisRef.o synthesisRef.cpp mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -o rsem-synthesis-reference-transcripts synthesisRef.o mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o preRef.o preRef.cpp mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -o rsem-preref preRef.o mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o buildReadIndex.o buildReadIndex.cpp mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -o rsem-build-read-index buildReadIndex.o mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -ffast-math -c -o simulation.o simulation.cpp In file included from simulation.cpp:13: utils.h: In member function ‘void PairedEndQModel::estimateFromReads(const char*)’: utils.h:147:31: warning: ‘%s’ directive writing up to 10004 bytes into a region of size 10001 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ ~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from simulation.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 10009) into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from simulation.cpp:13: utils.h: In member function ‘void PairedEndModel::estimateFromReads(const char*)’: utils.h:147:31: warning: ‘%s’ directive writing up to 10004 bytes into a region of size 10001 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ ~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from simulation.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 10009) into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -o rsem-simulate-reads simulation.o mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -c -o parseIt.o parseIt.cpp In file included from SamParser.h:13, from parseIt.cpp:27: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-parse-alignments parseIt.o -lhts -lz mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -ffast-math -c -o EM.o EM.cpp In file included from BamWriter.h:14, from EM.cpp:45: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ In file included from EM.cpp:45: BamWriter.h: In constructor ‘BamWriter::BamWriter(const char*, const char*, const char*, Transcripts&, int)’: BamWriter.h:70:16: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] 70 | sam_hdr_write(out, out_header); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BamWriter.h: In member function ‘void BamWriter::work(HitWrapper)’: BamWriter.h:101:13: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 101 | sam_write1(out, out_header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BamWriter.h: In member function ‘void BamWriter::work(HitWrapper)’: BamWriter.h:136:13: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 136 | sam_write1(out, out_header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BamWriter.h:137:13: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 137 | sam_write1(out, out_header, b2); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘int main(int, char**)’: EM.cpp:635:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 635 | system(command); | ~~~~~~^~~~~~~~~ EM.cpp: In function ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’: EM.cpp:127:19: warning: ‘.dat’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 127 | sprintf(datF, "%s.dat", imdName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’: EM.cpp:127:19: warning: ‘.dat’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 127 | sprintf(datF, "%s.dat", imdName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’: EM.cpp:127:19: warning: ‘.dat’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 127 | sprintf(datF, "%s.dat", imdName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’: EM.cpp:127:19: warning: ‘.dat’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 127 | sprintf(datF, "%s.dat", imdName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’: EM.cpp:435:31: warning: ‘.ofg’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 435 | sprintf(out_for_gibbs_F, "%s.ofg", imdName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:484:21: warning: ‘.theta’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 484 | sprintf(thetaF, "%s.theta", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:282:22: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 282 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:505:23: warning: ‘.transcript.bam’ directive writing 15 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 505 | sprintf(outBamF, "%s.transcript.bam", outName); | ^~~~~~~~~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 16 and 10020 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’: EM.cpp:435:31: warning: ‘.ofg’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 435 | sprintf(out_for_gibbs_F, "%s.ofg", imdName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:484:21: warning: ‘.theta’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 484 | sprintf(thetaF, "%s.theta", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:282:22: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 282 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:505:23: warning: ‘.transcript.bam’ directive writing 15 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 505 | sprintf(outBamF, "%s.transcript.bam", outName); | ^~~~~~~~~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 16 and 10020 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’: EM.cpp:435:31: warning: ‘.ofg’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 435 | sprintf(out_for_gibbs_F, "%s.ofg", imdName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:484:21: warning: ‘.theta’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 484 | sprintf(thetaF, "%s.theta", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:282:22: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 282 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:505:23: warning: ‘.transcript.bam’ directive writing 15 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 505 | sprintf(outBamF, "%s.transcript.bam", outName); | ^~~~~~~~~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 16 and 10020 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’: EM.cpp:435:31: warning: ‘.ofg’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 435 | sprintf(out_for_gibbs_F, "%s.ofg", imdName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:484:21: warning: ‘.theta’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 484 | sprintf(thetaF, "%s.theta", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:282:22: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 282 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:505:23: warning: ‘.transcript.bam’ directive writing 15 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 505 | sprintf(outBamF, "%s.transcript.bam", outName); | ^~~~~~~~~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 16 and 10020 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘int main(int, char**)’: EM.cpp:600:19: warning: ‘.seq’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 600 | sprintf(refF, "%s.seq", refName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:604:18: warning: ‘.ti’ directive writing 3 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 604 | sprintf(tiF, "%s.ti", refName); | ^~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 4 and 10008 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:607:19: warning: ‘.cnt’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 607 | sprintf(cntF, "%s.cnt", statName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:647:24: warning: ‘.mparams’ directive writing 8 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 647 | sprintf(mparamsF, "%s.mparams", imdName); | ^~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 9 and 10013 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:619:22: warning: ‘.theta’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 619 | sprintf(thetaF, "%s.theta", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:622:22: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 622 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:631:24: warning: ‘.transcript.bam’ directive writing 15 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 631 | sprintf(outBamF, "%s.transcript.bam", outName); | ^~~~~~~~~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 16 and 10020 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp:633:25: warning: ‘%s’ directive writing up to 10004 bytes into a region of size 1002 [-Wformat-overflow=] 633 | sprintf(command, "cp %s %s", inpSamF, outBamF); | ^~ ~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from EM.cpp:3: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 20013 bytes into a destination of size 1005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o SamHeader.o SamHeader.cpp mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-run-em EM.o SamHeader.o -lhts -lz mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o tbam2gbam.o tbam2gbam.cpp In file included from BamConverter.h:12, from tbam2gbam.cpp:8: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ In file included from tbam2gbam.cpp:8: BamConverter.h: In constructor ‘BamConverter::BamConverter(const char*, const char*, const char*, Transcripts&, int, const string&)’: BamConverter.h:70:15: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] 70 | sam_hdr_write(out, out_header); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BamConverter.h: In member function ‘void BamConverter::process()’: BamConverter.h:137:15: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 137 | sam_write1(out, out_header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BamConverter.h:138:29: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 138 | if (isPaired) sam_write1(out, out_header, b2); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BamConverter.h: In member function ‘void BamConverter::writeCollapsedLines()’: BamConverter.h:208:14: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 208 | sam_write1(out, out_header, tmp_b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BamConverter.h:212:15: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 212 | sam_write1(out, out_header, tmp_b2); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-tbam2gbam tbam2gbam.o SamHeader.o -lhts -lz mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o bam2wig.o bam2wig.cpp mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o wiggle.o wiggle.cpp In file included from wiggle.cpp:8: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-bam2wig bam2wig.o wiggle.o -lhts -lz mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o bam2readdepth.o bam2readdepth.cpp mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-bam2readdepth bam2readdepth.o wiggle.o -lhts -lz mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o getUnique.o getUnique.cpp In file included from getUnique.cpp:10: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ getUnique.cpp: In function ‘void output()’: getUnique.cpp:29:52: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 29 | for (size_t i = 0; i < arr.size(); ++i) sam_write1(out, header, arr[i]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ getUnique.cpp: In function ‘int main(int, char**)’: getUnique.cpp:45:15: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] 45 | sam_hdr_write(out, header); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-get-unique getUnique.o -lhts -lz mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o samValidator.o samValidator.cpp In file included from samValidator.cpp:11: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ samValidator.cpp: In function ‘bool check_read(bam1_t*, bam_hdr_t*)’: samValidator.cpp:28:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 28 | for (int i = 0; i < b->core.n_cigar; ++i) { | ~~^~~~~~~~~~~~~~~~~ samValidator.cpp:53:24: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=] 53 | printf(" aligns to [%d, %d) of transcript %s, which exceeds the transcript's boundary [0, %d)!\n", | ~^ | | | int | %lld 54 | b->core.pos, bam_endpos(b), header->target_name[b->core.tid], header->target_len[b->core.tid]); | ~~~~~~~~~~~ | | | hts_pos_t {aka long long int} samValidator.cpp:53:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=] 53 | printf(" aligns to [%d, %d) of transcript %s, which exceeds the transcript's boundary [0, %d)!\n", | ~^ | | | int | %lld 54 | b->core.pos, bam_endpos(b), header->target_name[b->core.tid], header->target_len[b->core.tid]); | ~~~~~~~~~~~~~ | | | hts_pos_t {aka long long int} samValidator.cpp: In function ‘int main(int, char**)’: samValidator.cpp:145:47: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=] 145 | printf("\nPaired-end read %s aligns to [%d, %d) of transcript %s, which exceeds the transcript's boundary [0, %d)!\n", | ~^ | | | int | %lld 146 | bam_get_qname(b), tb->core.pos, tb->core.pos + abs(tb->core.isize), header->target_name[tb->core.tid], header->target_len[tb->core.tid]); | ~~~~~~~~~~~~ | | | hts_pos_t {aka long long int} samValidator.cpp:145:51: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=] 145 | printf("\nPaired-end read %s aligns to [%d, %d) of transcript %s, which exceeds the transcript's boundary [0, %d)!\n", | ~^ | | | int | %lld 146 | bam_get_qname(b), tb->core.pos, tb->core.pos + abs(tb->core.isize), header->target_name[tb->core.tid], header->target_len[tb->core.tid]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | hts_pos_t {aka long long int} samValidator.cpp:176:49: warning: ‘readlen2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 176 | isValid = (creadlen == readlen && (!ispaired || creadlen2 == readlen2)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ samValidator.cpp:176:49: warning: ‘creadlen2’ may be used uninitialized in this function [-Wmaybe-uninitialized] mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-sam-validator samValidator.o -lhts -lz mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o scanForPairedEndReads.o scanForPairedEndReads.cpp In file included from scanForPairedEndReads.cpp:11: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ scanForPairedEndReads.cpp: In function ‘int main(int, char**)’: scanForPairedEndReads.cpp:66:15: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] 66 | sam_hdr_write(out, header); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ scanForPairedEndReads.cpp:94:65: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 94 | for (size_t i = 0; i < arr_both.size(); i++) { sam_write1(out, header, arr_both[i]); bam_destroy1(arr_both[i]); } | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:100:13: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 100 | sam_write1(out, header, arr_partial_1.back()); bam_destroy1(arr_partial_1.back()); arr_partial_1.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:101:13: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 101 | sam_write1(out, header, arr_partial_2.back()); bam_destroy1(arr_partial_2.back()); arr_partial_2.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:104:13: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 104 | sam_write1(out, header, arr_partial_1.back()); bam_destroy1(arr_partial_1.back()); arr_partial_1.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:105:13: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 105 | sam_write1(out, header, arr_partial_unknown.back()); bam_destroy1(arr_partial_unknown.back()); arr_partial_unknown.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:108:13: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 108 | sam_write1(out, header, arr_partial_2.back()); bam_destroy1(arr_partial_2.back()); arr_partial_2.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:109:13: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 109 | sam_write1(out, header, arr_partial_unknown.back()); bam_destroy1(arr_partial_unknown.back()); arr_partial_unknown.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:114:18: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 114 | sam_write1(out, header, arr_partial_unknown.back()); bam_destroy1(arr_partial_unknown.back()); arr_partial_unknown.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:118:16: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 118 | sam_write1(out, header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:120:18: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result] 120 | sam_write1(out, header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-scan-for-paired-end-reads scanForPairedEndReads.o -lhts -lz mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -ffast-math -c -o Gibbs.o Gibbs.cpp Gibbs.cpp: In function ‘void init()’: Gibbs.cpp:214:19: warning: ‘.countvectors’ directive writing 13 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 214 | sprintf(cvsF, "%s.countvectors", imdName); | ^~~~~~~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from Gibbs.cpp:1: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 14 and 10018 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Gibbs.cpp:225:20: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 225 | sprintf(outF, "%s%d", cvsF, i); | ^~ Gibbs.cpp:225:17: note: directive argument in the range [0, 2147483647] 225 | sprintf(outF, "%s%d", cvsF, i); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from Gibbs.cpp:1: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Gibbs.cpp: In function ‘int main(int, char**)’: Gibbs.cpp:495:21: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 495 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from Gibbs.cpp:1: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from Gibbs.cpp:10: utils.h: In member function ‘void PairedEndQModel::estimateFromReads(const char*)’: utils.h:147:31: warning: ‘%s’ directive writing up to 10004 bytes into a region of size 10001 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ ~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from Gibbs.cpp:1: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 10009) into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from Gibbs.cpp:10: utils.h: In member function ‘void PairedEndModel::estimateFromReads(const char*)’: utils.h:147:31: warning: ‘%s’ directive writing up to 10004 bytes into a region of size 10001 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ ~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from Gibbs.cpp:1: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 10009) into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-run-gibbs Gibbs.o -lhts mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wall -I. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -ffast-math -c -o calcCI.o calcCI.cpp In file included from calcCI.cpp:11: utils.h: In member function ‘void PairedEndModel::estimateFromReads(const char*)’: utils.h:147:31: warning: ‘%s’ directive writing up to 10004 bytes into a region of size 10001 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ ~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 10009) into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from calcCI.cpp:11: utils.h: In member function ‘void PairedEndQModel::estimateFromReads(const char*)’: utils.h:147:31: warning: ‘%s’ directive writing up to 10004 bytes into a region of size 10001 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ ~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 10009) into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ calcCI.cpp: In function ‘void sample_theta_vectors_from_count_vectors() [with ModelType = SingleModel]’: calcCI.cpp:183:20: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~ calcCI.cpp:183:17: note: directive argument in the range [0, 2147483646] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ calcCI.cpp: In function ‘void sample_theta_vectors_from_count_vectors() [with ModelType = SingleQModel]’: calcCI.cpp:183:20: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~ calcCI.cpp:183:17: note: directive argument in the range [0, 2147483646] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ calcCI.cpp: In function ‘void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndModel]’: calcCI.cpp:183:20: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~ calcCI.cpp:183:17: note: directive argument in the range [0, 2147483646] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ calcCI.cpp: In function ‘void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndQModel]’: calcCI.cpp:183:20: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~ calcCI.cpp:183:17: note: directive argument in the range [0, 2147483646] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ calcCI.cpp: In function ‘int main(int, char**)’: calcCI.cpp:542:19: warning: ‘.seq’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 542 | sprintf(refF, "%s.seq", refName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ calcCI.cpp:546:21: warning: ‘.grp’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 546 | sprintf(groupF, "%s.grp", refName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ calcCI.cpp:558:19: warning: ‘.tmp’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 558 | sprintf(tmpF, "%s.tmp", imdName); | ^~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ calcCI.cpp:559:19: warning: ‘.countvectors’ directive writing 13 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 559 | sprintf(cvsF, "%s.countvectors", imdName); | ^~~~~~~~~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 14 and 10018 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ calcCI.cpp:561:21: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 561 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In file included from /usr/mipsel-linux-gnu/include/stdio.h:867, from /usr/mipsel-linux-gnu/include/c++/9/cstdio:42, from calcCI.cpp:2: /usr/mipsel-linux-gnu/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mipsel-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-calculate-credibility-intervals calcCI.o -lhts make[2]: Leaving directory '/<>' for prog in convert-sam-for-rsem rsem-calculate-expression \ rsem-control-fdr rsem-generate-ngvector \ rsem-plot-transcript-wiggles rsem-prepare-reference \ rsem-run-ebseq; do pod2man ${prog} debian/${prog}.1; done help2man ./rsem-gff3-to-gtf --no-info --version-string="1.3.3+dfsg" \ --name 'Convert GFF3 files to GTF files.' > \ debian/rsem-gff3-to-gtf.1 help2man ./rsem-bam2wig --no-info --version-string="1.3.3+dfsg" \ --name 'Convert BAM files to wiggle files.' > \ debian/rsem-bam2wig.1 help2man: can't get `--help' info from ./rsem-bam2wig Try `--no-discard-stderr' if option outputs to stderr make[1]: *** [debian/rules:16: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:10: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-05-19T07:54:48Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 98900 Build-Time: 110 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 25 Job: rsem_1.3.3+dfsg-1 Machine Architecture: amd64 Package: rsem Package-Time: 147 Source-Version: 1.3.3+dfsg-1 Space: 98900 Status: attempted Version: 1.3.3+dfsg-1 -------------------------------------------------------------------------------- Finished at 2020-05-19T07:54:48Z Build needed 00:02:27, 98900k disk space