sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | rsem 1.3.3+dfsg-3 (armel) Tue, 07 Oct 2025 23:04:14 +0000 | +==============================================================================+ Package: rsem Version: 1.3.3+dfsg-3 Source Version: 1.3.3+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-526a08a0-8e77-4a97-8b68-33507743cddc' with '<>' I: NOTICE: Log filtering will replace 'build/rsem-dwRFOW/resolver-wlo1aP' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian unstable InRelease Get:2 http://localhost:3142/debian unstable/main armel Packages [9598 kB] Fetched 9598 kB in 1s (10.4 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2546 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main armel linux-libc-dev all 6.16.11-1 [2546 kB] Fetched 2546 kB in 0s (134 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12899 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_6.16.11-1_all.deb ... Unpacking linux-libc-dev (6.16.11-1) over (6.16.10-1) ... Setting up linux-libc-dev (6.16.11-1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'rsem' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/rsem.git Please use: git clone https://salsa.debian.org/med-team/rsem.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.9 MB of source archives. Get:1 http://localhost:3142/debian unstable/main rsem 1.3.3+dfsg-3 (dsc) [2249 B] Get:2 http://localhost:3142/debian unstable/main rsem 1.3.3+dfsg-3 (tar) [275 kB] Get:3 http://localhost:3142/debian unstable/main rsem 1.3.3+dfsg-3 (diff) [35.7 MB] Fetched 35.9 MB in 3s (13.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/rsem-dwRFOW/rsem-1.3.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/rsem-dwRFOW' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libncurses-dev, libboost-dev, python3:any, help2man, libhts-dev, bowtie | bowtie2, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libncurses-dev, libboost-dev, python3:any, help2man, libhts-dev, bowtie, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [845 B] Get:5 copy:/<>/apt_archive ./ Packages [842 B] Fetched 2296 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bowtie bsdextrautils comerr-dev:armel cpp-15-arm-linux-gnueabi cpp-arm-linux-gnueabi crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-14-base:armel gcc-15-arm-linux-gnueabi gcc-15-arm-linux-gnueabi-base gcc-15-base:armel gcc-15-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base help2man intltool-debian krb5-multidev:armel libarchive-zip-perl libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libboost-dev:armel libboost1.83-dev:armel libbrotli-dev:armel libbrotli1:armel libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libcrypt-dev:armel libcrypt1:armel libcurl3t64-gnutls:armel libcurl4-gnutls-dev:armel libdb5.3t64:armel libdebhelper-perl libdeflate-dev:armel libdeflate0:armel libelf1t64 libevent-2.1-7t64:armel libexpat1 libfakeroot libffi8 libffi8:armel libfile-stripnondeterminism-perl libgcc-14-dev:armel libgcc-15-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp-dev:armel libgmp10:armel libgmpxx4ldbl:armel libgnutls-dane0t64:armel libgnutls-openssl27t64:armel libgnutls28-dev:armel libgnutls30t64:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libgssrpc4t64:armel libhogweed6t64:armel libhts-dev:armel libhts3t64:armel libhtscodecs2:armel libidn2-0:armel libidn2-dev:armel libk5crypto3:armel libkadm5clnt-mit12:armel libkadm5srv-mit12:armel libkdb5-10t64:armel libkeyutils1:armel libkrb5-3:armel libkrb5-dev:armel libkrb5support0:armel libldap-dev:armel libldap2:armel liblocale-gettext-perl liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1t64 libncurses-dev:armel libncurses6:armel libncursesw6 libncursesw6:armel libnettle8t64:armel libnghttp2-14:armel libnghttp2-dev:armel libnghttp3-9:armel libnghttp3-dev:armel libngtcp2-16:armel libngtcp2-crypto-gnutls-dev:armel libngtcp2-crypto-gnutls8:armel libngtcp2-dev:armel libp11-kit-dev:armel libp11-kit0:armel libpipeline1 libpkgconf3 libpsl-dev:armel libpsl5t64:armel libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp-dev:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsqlite3-0 libssh2-1-dev:armel libssh2-1t64:armel libssl-dev:armel libssl3t64:armel libstdc++-14-dev:armel libstdc++-15-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libtasn1-6:armel libtasn1-6-dev:armel libtinfo6:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunbound8:armel libunistring5 libunistring5:armel libxml2-16 libzstd-dev:armel libzstd1:armel linux-libc-dev-armel-cross m4 man-db media-types netbase nettle-dev:armel pkgconf:armel pkgconf-bin po-debconf python3 python3-minimal python3.13 python3.13-minimal readline-common sensible-utils zlib1g:armel zlib1g-dev:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc bowtie-examples doc-base:armel gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc:armel libboost-doc:armel libboost1.83-doc:armel libboost-atomic1.83-dev:armel libboost-chrono1.83-dev:armel libboost-container1.83-dev:armel libboost-context1.83-dev:armel libboost-contract1.83-dev:armel libboost-coroutine1.83-dev:armel libboost-date-time1.83-dev:armel libboost-exception1.83-dev:armel libboost-fiber1.83-dev:armel libboost-filesystem1.83-dev:armel libboost-graph-parallel1.83-dev:armel libboost-graph1.83-dev:armel libboost-iostreams1.83-dev:armel libboost-json1.83-dev:armel libboost-locale1.83-dev:armel libboost-log1.83-dev:armel libboost-math1.83-dev:armel libboost-mpi-python1.83-dev:armel libboost-mpi1.83-dev:armel libboost-nowide1.83-dev:armel libboost-numpy1.83-dev:armel libboost-program-options1.83-dev:armel libboost-python1.83-dev:armel libboost-random1.83-dev:armel libboost-regex1.83-dev:armel libboost-serialization1.83-dev:armel libboost-stacktrace1.83-dev:armel libboost-system1.83-dev:armel libboost-test1.83-dev:armel libboost-thread1.83-dev:armel libboost-timer1.83-dev:armel libboost-type-erasure1.83-dev:armel libboost-url1.83-dev:armel libboost-wave1.83-dev:armel libboost1.83-tools-dev:armel libmpfrc++-dev:armel libntl-dev:armel glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel libcurl4-doc:armel libidn-dev:armel gmp-doc:armel libgmp10-doc:armel libmpfr-dev:armel dns-root-data:armel gnutls-bin:armel gnutls-doc:armel krb5-user:armel liblzma-doc:armel ncurses-doc:armel libnghttp2-doc:armel p11-kit-doc:armel libssl-doc:armel libstdc++-14-doc:armel libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx bzip2-doc:armel ca-certificates:armel libarchive-cpio-perl krb5-locales:armel libldap-common:armel libgpm2:armel libgpm2 publicsuffix:armel libsasl2-modules:armel libtasn1-doc:armel libltdl-dev libmail-sendmail-perl ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bowtie bsdextrautils comerr-dev:armel cpp-15-arm-linux-gnueabi cpp-arm-linux-gnueabi crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-14-base:armel gcc-15-arm-linux-gnueabi gcc-15-arm-linux-gnueabi-base gcc-15-base:armel gcc-15-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base groff-base help2man intltool-debian krb5-multidev:armel libarchive-zip-perl libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libboost-dev:armel libboost1.83-dev:armel libbrotli-dev:armel libbrotli1:armel libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libcrypt-dev:armel libcrypt1:armel libcurl3t64-gnutls:armel libcurl4-gnutls-dev:armel libdb5.3t64:armel libdebhelper-perl libdeflate-dev:armel libdeflate0:armel libelf1t64 libevent-2.1-7t64:armel libexpat1 libfakeroot libffi8 libffi8:armel libfile-stripnondeterminism-perl libgcc-14-dev:armel libgcc-15-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp-dev:armel libgmp10:armel libgmpxx4ldbl:armel libgnutls-dane0t64:armel libgnutls-openssl27t64:armel libgnutls28-dev:armel libgnutls30t64:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libgssrpc4t64:armel libhogweed6t64:armel libhts-dev:armel libhts3t64:armel libhtscodecs2:armel libidn2-0:armel libidn2-dev:armel libk5crypto3:armel libkadm5clnt-mit12:armel libkadm5srv-mit12:armel libkdb5-10t64:armel libkeyutils1:armel libkrb5-3:armel libkrb5-dev:armel libkrb5support0:armel libldap-dev:armel libldap2:armel liblocale-gettext-perl liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1t64 libncurses-dev:armel libncurses6:armel libncursesw6 libncursesw6:armel libnettle8t64:armel libnghttp2-14:armel libnghttp2-dev:armel libnghttp3-9:armel libnghttp3-dev:armel libngtcp2-16:armel libngtcp2-crypto-gnutls-dev:armel libngtcp2-crypto-gnutls8:armel libngtcp2-dev:armel libp11-kit-dev:armel libp11-kit0:armel libpipeline1 libpkgconf3 libpsl-dev:armel libpsl5t64:armel libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp-dev:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsqlite3-0 libssh2-1-dev:armel libssh2-1t64:armel libssl-dev:armel libssl3t64:armel libstdc++-14-dev:armel libstdc++-15-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libtasn1-6:armel libtasn1-6-dev:armel libtinfo6:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunbound8:armel libunistring5 libunistring5:armel libxml2-16 libzstd-dev:armel libzstd1:armel linux-libc-dev-armel-cross m4 man-db media-types netbase nettle-dev:armel pkgconf:armel pkgconf-bin po-debconf python3 python3-minimal python3.13 python3.13-minimal readline-common sbuild-build-depends-main-dummy:armel sensible-utils zlib1g:armel zlib1g-dev:armel 0 upgraded, 165 newly installed, 0 to remove and 0 not upgraded. Need to get 335 MB of archives. After this operation, 1499 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:3 http://localhost:3142/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get:5 http://localhost:3142/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get:6 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get:7 http://localhost:3142/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get:8 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:11 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get:15 http://localhost:3142/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get:17 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get:18 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:21 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:22 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get:24 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:25 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.2-3 [98.3 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:27 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:28 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get:29 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:30 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:31 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:32 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:33 http://localhost:3142/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.45-7 [1627 kB] Get:34 http://localhost:3142/debian unstable/main amd64 bowtie amd64 1.3.1-3 [1627 kB] Get:35 http://localhost:3142/debian unstable/main armel gcc-15-base armel 15.2.0-4 [52.8 kB] Get:36 http://localhost:3142/debian unstable/main armel libgcc-s1 armel 15.2.0-4 [38.9 kB] Get:37 http://localhost:3142/debian unstable/main armel libc6 armel 2.41-12 [2262 kB] Get:38 http://localhost:3142/debian unstable/main armel libcrypt1 armel 1:4.4.38-1 [97.4 kB] Get:39 http://localhost:3142/debian unstable/main armel libcrypt-dev armel 1:4.4.38-1 [127 kB] Get:40 http://localhost:3142/debian unstable/main armel libc6-dev armel 2.41-12 [1362 kB] Get:41 http://localhost:3142/debian unstable/main armel libcom-err2 armel 1.47.2-3+b3 [24.4 kB] Get:42 http://localhost:3142/debian unstable/main armel comerr-dev armel 2.1-1.47.2-3+b3 [56.4 kB] Get:43 http://localhost:3142/debian unstable/main amd64 gcc-15-arm-linux-gnueabi-base amd64 15.2.0-4cross1 [53.0 kB] Get:44 http://localhost:3142/debian unstable/main amd64 cpp-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [80.4 MB] Get:45 http://localhost:3142/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:15.2.0-4 [4448 B] Get:46 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base-ports all 15.2.0-4cross1 [48.4 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libc6-armel-cross all 2.41-11cross1 [942 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armel-cross all 15.2.0-4cross1 [38.9 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libgomp1-armel-cross all 15.2.0-4cross1 [113 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libatomic1-armel-cross all 15.2.0-4cross1 [9472 B] Get:51 http://localhost:3142/debian unstable/main amd64 libasan8-armel-cross all 15.2.0-4cross1 [2590 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libstdc++6-armel-cross all 15.2.0-4cross1 [561 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libubsan1-armel-cross all 15.2.0-4cross1 [1072 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-armel-cross all 15.2.0-4cross1 [755 kB] Get:55 http://localhost:3142/debian unstable/main amd64 gcc-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [88.1 MB] Get:56 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:15.2.0-4 [1456 B] Get:57 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armel-cross all 6.12.38-1cross1 [2430 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libc6-dev-armel-cross all 2.41-11cross1 [1358 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-armel-cross all 15.2.0-4cross1 [2409 kB] Get:60 http://localhost:3142/debian unstable/main amd64 g++-15-arm-linux-gnueabi amd64 15.2.0-4cross1 [85.9 MB] Get:61 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:15.2.0-4 [1204 B] Get:62 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armel all 12.12 [3552 B] Get:63 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get:65 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:68 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:69 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get:70 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get:73 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:74 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:75 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:76 http://localhost:3142/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:78 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:79 http://localhost:3142/debian unstable/main armel gcc-14-base armel 14.3.0-8 [52.1 kB] Get:80 http://localhost:3142/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:81 http://localhost:3142/debian unstable/main armel libkrb5support0 armel 1.21.3-5 [30.4 kB] Get:82 http://localhost:3142/debian unstable/main armel libk5crypto3 armel 1.21.3-5 [75.3 kB] Get:83 http://localhost:3142/debian unstable/main armel libkeyutils1 armel 1.6.3-6 [8568 B] Get:84 http://localhost:3142/debian unstable/main armel libatomic1 armel 15.2.0-4 [9708 B] Get:85 http://localhost:3142/debian unstable/main armel libzstd1 armel 1.5.7+dfsg-2 [274 kB] Get:86 http://localhost:3142/debian unstable/main armel zlib1g armel 1:1.3.dfsg+really1.3.1-1+b1 [75.3 kB] Get:87 http://localhost:3142/debian unstable/main armel libssl3t64 armel 3.5.4-1 [1952 kB] Get:88 http://localhost:3142/debian unstable/main armel libkrb5-3 armel 1.21.3-5 [282 kB] Get:89 http://localhost:3142/debian unstable/main armel libgssapi-krb5-2 armel 1.21.3-5 [114 kB] Get:90 http://localhost:3142/debian unstable/main armel libgssrpc4t64 armel 1.21.3-5 [52.5 kB] Get:91 http://localhost:3142/debian unstable/main armel libkadm5clnt-mit12 armel 1.21.3-5 [37.6 kB] Get:92 http://localhost:3142/debian unstable/main armel libkdb5-10t64 armel 1.21.3-5 [37.6 kB] Get:93 http://localhost:3142/debian unstable/main armel libkadm5srv-mit12 armel 1.21.3-5 [47.4 kB] Get:94 http://localhost:3142/debian unstable/main armel krb5-multidev armel 1.21.3-5 [126 kB] Get:95 http://localhost:3142/debian unstable/main armel libasan8 armel 15.2.0-4 [2601 kB] Get:96 http://localhost:3142/debian unstable/main armel libgomp1 armel 15.2.0-4 [116 kB] Get:97 http://localhost:3142/debian unstable/main armel libstdc++6 armel 15.2.0-4 [608 kB] Get:98 http://localhost:3142/debian unstable/main armel libubsan1 armel 15.2.0-4 [1072 kB] Get:99 http://localhost:3142/debian unstable/main armel libgcc-14-dev armel 14.3.0-8 [760 kB] Get:100 http://localhost:3142/debian unstable/main armel libstdc++-14-dev armel 14.3.0-8 [2608 kB] Get:101 http://localhost:3142/debian unstable/main armel libboost1.83-dev armel 1.83.0-5 [10.6 MB] Get:102 http://localhost:3142/debian unstable/main armel libboost-dev armel 1.83.0.2+b2 [3832 B] Get:103 http://localhost:3142/debian unstable/main armel libbrotli1 armel 1.1.0-2+b7 [302 kB] Get:104 http://localhost:3142/debian unstable/main armel libbrotli-dev armel 1.1.0-2+b7 [301 kB] Get:105 http://localhost:3142/debian unstable/main armel libbz2-1.0 armel 1.0.8-6 [36.3 kB] Get:106 http://localhost:3142/debian unstable/main armel libbz2-dev armel 1.0.8-6 [28.4 kB] Get:107 http://localhost:3142/debian unstable/main armel libgmp10 armel 2:6.3.0+dfsg-5 [508 kB] Get:108 http://localhost:3142/debian unstable/main armel libnettle8t64 armel 3.10.2-1 [311 kB] Get:109 http://localhost:3142/debian unstable/main armel libhogweed6t64 armel 3.10.2-1 [322 kB] Get:110 http://localhost:3142/debian unstable/main armel libunistring5 armel 1.3-2 [429 kB] Get:111 http://localhost:3142/debian unstable/main armel libidn2-0 armel 2.3.8-4 [105 kB] Get:112 http://localhost:3142/debian unstable/main armel libffi8 armel 3.5.2-2 [20.4 kB] Get:113 http://localhost:3142/debian unstable/main armel libp11-kit0 armel 0.25.9-2 [420 kB] Get:114 http://localhost:3142/debian unstable/main armel libtasn1-6 armel 4.20.0-2 [43.8 kB] Get:115 http://localhost:3142/debian unstable/main armel libgnutls30t64 armel 3.8.10-2 [1386 kB] Get:116 http://localhost:3142/debian unstable/main armel libdb5.3t64 armel 5.3.28+dfsg2-10 [589 kB] Get:117 http://localhost:3142/debian unstable/main armel libsasl2-modules-db armel 2.1.28+dfsg1-10 [18.4 kB] Get:118 http://localhost:3142/debian unstable/main armel libsasl2-2 armel 2.1.28+dfsg1-10 [50.5 kB] Get:119 http://localhost:3142/debian unstable/main armel libldap2 armel 2.6.10+dfsg-1 [167 kB] Get:120 http://localhost:3142/debian unstable/main armel libnghttp2-14 armel 1.64.0-1.1+b1 [63.3 kB] Get:121 http://localhost:3142/debian unstable/main armel libnghttp3-9 armel 1.12.0-1 [60.2 kB] Get:122 http://localhost:3142/debian unstable/main armel libngtcp2-16 armel 1.16.0-1 [129 kB] Get:123 http://localhost:3142/debian unstable/main armel libngtcp2-crypto-gnutls8 armel 1.16.0-1 [22.0 kB] Get:124 http://localhost:3142/debian unstable/main armel libpsl5t64 armel 0.21.2-1.1+b1 [55.9 kB] Get:125 http://localhost:3142/debian unstable/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-3 [53.4 kB] Get:126 http://localhost:3142/debian unstable/main armel libssh2-1t64 armel 1.11.1-1 [226 kB] Get:127 http://localhost:3142/debian unstable/main armel libcurl3t64-gnutls armel 8.16.0-2 [339 kB] Get:128 http://localhost:3142/debian unstable/main armel libevent-2.1-7t64 armel 2.1.12-stable-10+b1 [165 kB] Get:129 http://localhost:3142/debian unstable/main armel libunbound8 armel 1.24.0-2 [546 kB] Get:130 http://localhost:3142/debian unstable/main armel libgnutls-dane0t64 armel 3.8.10-2 [450 kB] Get:131 http://localhost:3142/debian unstable/main armel libgnutls-openssl27t64 armel 3.8.10-2 [449 kB] Get:132 http://localhost:3142/debian unstable/main armel libidn2-dev armel 2.3.8-4 [98.6 kB] Get:133 http://localhost:3142/debian unstable/main armel libp11-kit-dev armel 0.25.9-2 [220 kB] Get:134 http://localhost:3142/debian unstable/main armel libtasn1-6-dev armel 4.20.0-2 [93.4 kB] Get:135 http://localhost:3142/debian unstable/main armel libgmpxx4ldbl armel 2:6.3.0+dfsg-5 [328 kB] Get:136 http://localhost:3142/debian unstable/main armel libgmp-dev armel 2:6.3.0+dfsg-5 [590 kB] Get:137 http://localhost:3142/debian unstable/main armel nettle-dev armel 3.10.2-1 [1316 kB] Get:138 http://localhost:3142/debian unstable/main armel libgnutls28-dev armel 3.8.10-2 [1354 kB] Get:139 http://localhost:3142/debian unstable/main armel libkrb5-dev armel 1.21.3-5 [16.1 kB] Get:140 http://localhost:3142/debian unstable/main armel libldap-dev armel 2.6.10+dfsg-1 [286 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:142 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:143 http://localhost:3142/debian unstable/main armel pkgconf armel 1.8.1-4 [26.1 kB] Get:144 http://localhost:3142/debian unstable/main armel libnghttp2-dev armel 1.64.0-1.1+b1 [103 kB] Get:145 http://localhost:3142/debian unstable/main armel libnghttp3-dev armel 1.12.0-1 [87.4 kB] Get:146 http://localhost:3142/debian unstable/main armel libngtcp2-crypto-gnutls-dev armel 1.16.0-1 [22.9 kB] Get:147 http://localhost:3142/debian unstable/main armel libngtcp2-dev armel 1.16.0-1 [187 kB] Get:148 http://localhost:3142/debian unstable/main armel libpsl-dev armel 0.21.2-1.1+b1 [77.0 kB] Get:149 http://localhost:3142/debian unstable/main armel zlib1g-dev armel 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get:150 http://localhost:3142/debian unstable/main armel librtmp-dev armel 2.4+20151223.gitfa8646d.1-3 [63.4 kB] Get:151 http://localhost:3142/debian unstable/main armel libssl-dev armel 3.5.4-1 [2556 kB] Get:152 http://localhost:3142/debian unstable/main armel libssh2-1-dev armel 1.11.1-1 [377 kB] Get:153 http://localhost:3142/debian unstable/main armel libzstd-dev armel 1.5.7+dfsg-2 [341 kB] Get:154 http://localhost:3142/debian unstable/main armel libcurl4-gnutls-dev armel 8.16.0-2 [470 kB] Get:155 http://localhost:3142/debian unstable/main armel libdeflate0 armel 1.23-2 [33.8 kB] Get:156 http://localhost:3142/debian unstable/main armel libdeflate-dev armel 1.23-2 [42.0 kB] Get:157 http://localhost:3142/debian unstable/main armel libhtscodecs2 armel 1.6.1-2 [64.0 kB] Get:158 http://localhost:3142/debian unstable/main armel liblzma5 armel 5.8.1-2 [297 kB] Get:159 http://localhost:3142/debian unstable/main armel libhts3t64 armel 1.22.1+ds2-1 [411 kB] Get:160 http://localhost:3142/debian unstable/main armel liblzma-dev armel 5.8.1-2 [338 kB] Get:161 http://localhost:3142/debian unstable/main armel libhts-dev armel 1.22.1+ds2-1 [1677 kB] Get:162 http://localhost:3142/debian unstable/main armel libtinfo6 armel 6.5+20250216-2 [332 kB] Get:163 http://localhost:3142/debian unstable/main armel libncurses6 armel 6.5+20250216-2 [83.4 kB] Get:164 http://localhost:3142/debian unstable/main armel libncursesw6 armel 6.5+20250216-2 [109 kB] Get:165 http://localhost:3142/debian unstable/main armel libncurses-dev armel 6.5+20250216-2 [310 kB] Preconfiguring packages ... Fetched 335 MB in 2s (211 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 12899 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13248 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-8_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-8) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../08-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../09-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... 13763 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../003-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.41.2-3_amd64.deb ... Unpacking bsdextrautils (2.41.2-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../009-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package binutils-arm-linux-gnueabi. Preparing to unpack .../016-binutils-arm-linux-gnueabi_2.45-7_amd64.deb ... Unpacking binutils-arm-linux-gnueabi (2.45-7) ... Selecting previously unselected package bowtie. Preparing to unpack .../017-bowtie_1.3.1-3_amd64.deb ... Unpacking bowtie (1.3.1-3) ... Selecting previously unselected package gcc-15-base:armel. Preparing to unpack .../018-gcc-15-base_15.2.0-4_armel.deb ... Unpacking gcc-15-base:armel (15.2.0-4) ... Selecting previously unselected package libgcc-s1:armel. Preparing to unpack .../019-libgcc-s1_15.2.0-4_armel.deb ... Unpacking libgcc-s1:armel (15.2.0-4) ... Selecting previously unselected package libc6:armel. Preparing to unpack .../020-libc6_2.41-12_armel.deb ... Unpacking libc6:armel (2.41-12) ... Selecting previously unselected package libcrypt1:armel. Preparing to unpack .../021-libcrypt1_1%3a4.4.38-1_armel.deb ... Unpacking libcrypt1:armel (1:4.4.38-1) ... Selecting previously unselected package libcrypt-dev:armel. Preparing to unpack .../022-libcrypt-dev_1%3a4.4.38-1_armel.deb ... Unpacking libcrypt-dev:armel (1:4.4.38-1) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../023-libc6-dev_2.41-12_armel.deb ... Unpacking libc6-dev:armel (2.41-12) ... Selecting previously unselected package libcom-err2:armel. Preparing to unpack .../024-libcom-err2_1.47.2-3+b3_armel.deb ... Unpacking libcom-err2:armel (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:armel. Preparing to unpack .../025-comerr-dev_2.1-1.47.2-3+b3_armel.deb ... Unpacking comerr-dev:armel (2.1-1.47.2-3+b3) ... Selecting previously unselected package gcc-15-arm-linux-gnueabi-base:amd64. Preparing to unpack .../026-gcc-15-arm-linux-gnueabi-base_15.2.0-4cross1_amd64.deb ... Unpacking gcc-15-arm-linux-gnueabi-base:amd64 (15.2.0-4cross1) ... Selecting previously unselected package cpp-15-arm-linux-gnueabi. Preparing to unpack .../027-cpp-15-arm-linux-gnueabi_15.2.0-4cross1_amd64.deb ... Unpacking cpp-15-arm-linux-gnueabi (15.2.0-4cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabi. Preparing to unpack .../028-cpp-arm-linux-gnueabi_4%3a15.2.0-4_amd64.deb ... Unpacking cpp-arm-linux-gnueabi (4:15.2.0-4) ... Selecting previously unselected package gcc-15-cross-base-ports. Preparing to unpack .../029-gcc-15-cross-base-ports_15.2.0-4cross1_all.deb ... Unpacking gcc-15-cross-base-ports (15.2.0-4cross1) ... Selecting previously unselected package libc6-armel-cross. Preparing to unpack .../030-libc6-armel-cross_2.41-11cross1_all.deb ... Unpacking libc6-armel-cross (2.41-11cross1) ... Selecting previously unselected package libgcc-s1-armel-cross. Preparing to unpack .../031-libgcc-s1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libgcc-s1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libgomp1-armel-cross. Preparing to unpack .../032-libgomp1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libgomp1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libatomic1-armel-cross. Preparing to unpack .../033-libatomic1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libatomic1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libasan8-armel-cross. Preparing to unpack .../034-libasan8-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libasan8-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libstdc++6-armel-cross. Preparing to unpack .../035-libstdc++6-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libstdc++6-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libubsan1-armel-cross. Preparing to unpack .../036-libubsan1-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libubsan1-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package libgcc-15-dev-armel-cross. Preparing to unpack .../037-libgcc-15-dev-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libgcc-15-dev-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package gcc-15-arm-linux-gnueabi. Preparing to unpack .../038-gcc-15-arm-linux-gnueabi_15.2.0-4cross1_amd64.deb ... Unpacking gcc-15-arm-linux-gnueabi (15.2.0-4cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabi. Preparing to unpack .../039-gcc-arm-linux-gnueabi_4%3a15.2.0-4_amd64.deb ... Unpacking gcc-arm-linux-gnueabi (4:15.2.0-4) ... Selecting previously unselected package linux-libc-dev-armel-cross. Preparing to unpack .../040-linux-libc-dev-armel-cross_6.12.38-1cross1_all.deb ... Unpacking linux-libc-dev-armel-cross (6.12.38-1cross1) ... Selecting previously unselected package libc6-dev-armel-cross. Preparing to unpack .../041-libc6-dev-armel-cross_2.41-11cross1_all.deb ... Unpacking libc6-dev-armel-cross (2.41-11cross1) ... Selecting previously unselected package libstdc++-15-dev-armel-cross. Preparing to unpack .../042-libstdc++-15-dev-armel-cross_15.2.0-4cross1_all.deb ... Unpacking libstdc++-15-dev-armel-cross (15.2.0-4cross1) ... Selecting previously unselected package g++-15-arm-linux-gnueabi. Preparing to unpack .../043-g++-15-arm-linux-gnueabi_15.2.0-4cross1_amd64.deb ... Unpacking g++-15-arm-linux-gnueabi (15.2.0-4cross1) ... Selecting previously unselected package g++-arm-linux-gnueabi. Preparing to unpack .../044-g++-arm-linux-gnueabi_4%3a15.2.0-4_amd64.deb ... Unpacking g++-arm-linux-gnueabi (4:15.2.0-4) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../045-crossbuild-essential-armel_12.12_all.deb ... Unpacking crossbuild-essential-armel (12.12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../046-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../047-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../048-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../049-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../050-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../051-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../052-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../053-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../054-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../055-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../056-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../057-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../058-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../059-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../060-libfakeroot_1.37.1.2-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.37.1.2-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../061-fakeroot_1.37.1.2-1_amd64.deb ... Unpacking fakeroot (1.37.1.2-1) ... Selecting previously unselected package gcc-14-base:armel. Preparing to unpack .../062-gcc-14-base_14.3.0-8_armel.deb ... Unpacking gcc-14-base:armel (14.3.0-8) ... Selecting previously unselected package help2man. Preparing to unpack .../063-help2man_1.49.3_amd64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libkrb5support0:armel. Preparing to unpack .../064-libkrb5support0_1.21.3-5_armel.deb ... Unpacking libkrb5support0:armel (1.21.3-5) ... Selecting previously unselected package libk5crypto3:armel. Preparing to unpack .../065-libk5crypto3_1.21.3-5_armel.deb ... Unpacking libk5crypto3:armel (1.21.3-5) ... Selecting previously unselected package libkeyutils1:armel. Preparing to unpack .../066-libkeyutils1_1.6.3-6_armel.deb ... Unpacking libkeyutils1:armel (1.6.3-6) ... Selecting previously unselected package libatomic1:armel. Preparing to unpack .../067-libatomic1_15.2.0-4_armel.deb ... Unpacking libatomic1:armel (15.2.0-4) ... Selecting previously unselected package libzstd1:armel. Preparing to unpack .../068-libzstd1_1.5.7+dfsg-2_armel.deb ... Unpacking libzstd1:armel (1.5.7+dfsg-2) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../069-zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_armel.deb ... Unpacking zlib1g:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libssl3t64:armel. Preparing to unpack .../070-libssl3t64_3.5.4-1_armel.deb ... Unpacking libssl3t64:armel (3.5.4-1) ... Selecting previously unselected package libkrb5-3:armel. Preparing to unpack .../071-libkrb5-3_1.21.3-5_armel.deb ... Unpacking libkrb5-3:armel (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:armel. Preparing to unpack .../072-libgssapi-krb5-2_1.21.3-5_armel.deb ... Unpacking libgssapi-krb5-2:armel (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:armel. Preparing to unpack .../073-libgssrpc4t64_1.21.3-5_armel.deb ... Unpacking libgssrpc4t64:armel (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:armel. Preparing to unpack .../074-libkadm5clnt-mit12_1.21.3-5_armel.deb ... Unpacking libkadm5clnt-mit12:armel (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:armel. Preparing to unpack .../075-libkdb5-10t64_1.21.3-5_armel.deb ... Unpacking libkdb5-10t64:armel (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:armel. Preparing to unpack .../076-libkadm5srv-mit12_1.21.3-5_armel.deb ... Unpacking libkadm5srv-mit12:armel (1.21.3-5) ... Selecting previously unselected package krb5-multidev:armel. Preparing to unpack .../077-krb5-multidev_1.21.3-5_armel.deb ... Unpacking krb5-multidev:armel (1.21.3-5) ... Selecting previously unselected package libasan8:armel. Preparing to unpack .../078-libasan8_15.2.0-4_armel.deb ... Unpacking libasan8:armel (15.2.0-4) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../079-libgomp1_15.2.0-4_armel.deb ... Unpacking libgomp1:armel (15.2.0-4) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../080-libstdc++6_15.2.0-4_armel.deb ... Unpacking libstdc++6:armel (15.2.0-4) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../081-libubsan1_15.2.0-4_armel.deb ... Unpacking libubsan1:armel (15.2.0-4) ... Selecting previously unselected package libgcc-14-dev:armel. Preparing to unpack .../082-libgcc-14-dev_14.3.0-8_armel.deb ... Unpacking libgcc-14-dev:armel (14.3.0-8) ... Selecting previously unselected package libstdc++-14-dev:armel. Preparing to unpack .../083-libstdc++-14-dev_14.3.0-8_armel.deb ... Unpacking libstdc++-14-dev:armel (14.3.0-8) ... Selecting previously unselected package libboost1.83-dev:armel. Preparing to unpack .../084-libboost1.83-dev_1.83.0-5_armel.deb ... Unpacking libboost1.83-dev:armel (1.83.0-5) ... Selecting previously unselected package libboost-dev:armel. Preparing to unpack .../085-libboost-dev_1.83.0.2+b2_armel.deb ... Unpacking libboost-dev:armel (1.83.0.2+b2) ... Selecting previously unselected package libbrotli1:armel. Preparing to unpack .../086-libbrotli1_1.1.0-2+b7_armel.deb ... Unpacking libbrotli1:armel (1.1.0-2+b7) ... Selecting previously unselected package libbrotli-dev:armel. Preparing to unpack .../087-libbrotli-dev_1.1.0-2+b7_armel.deb ... Unpacking libbrotli-dev:armel (1.1.0-2+b7) ... Selecting previously unselected package libbz2-1.0:armel. Preparing to unpack .../088-libbz2-1.0_1.0.8-6_armel.deb ... Unpacking libbz2-1.0:armel (1.0.8-6) ... Selecting previously unselected package libbz2-dev:armel. Preparing to unpack .../089-libbz2-dev_1.0.8-6_armel.deb ... Unpacking libbz2-dev:armel (1.0.8-6) ... Selecting previously unselected package libgmp10:armel. Preparing to unpack .../090-libgmp10_2%3a6.3.0+dfsg-5_armel.deb ... Unpacking libgmp10:armel (2:6.3.0+dfsg-5) ... Selecting previously unselected package libnettle8t64:armel. Preparing to unpack .../091-libnettle8t64_3.10.2-1_armel.deb ... Unpacking libnettle8t64:armel (3.10.2-1) ... Selecting previously unselected package libhogweed6t64:armel. Preparing to unpack .../092-libhogweed6t64_3.10.2-1_armel.deb ... Unpacking libhogweed6t64:armel (3.10.2-1) ... Selecting previously unselected package libunistring5:armel. Preparing to unpack .../093-libunistring5_1.3-2_armel.deb ... Unpacking libunistring5:armel (1.3-2) ... Selecting previously unselected package libidn2-0:armel. Preparing to unpack .../094-libidn2-0_2.3.8-4_armel.deb ... Unpacking libidn2-0:armel (2.3.8-4) ... Selecting previously unselected package libffi8:armel. Preparing to unpack .../095-libffi8_3.5.2-2_armel.deb ... Unpacking libffi8:armel (3.5.2-2) ... Selecting previously unselected package libp11-kit0:armel. Preparing to unpack .../096-libp11-kit0_0.25.9-2_armel.deb ... Unpacking libp11-kit0:armel (0.25.9-2) ... Selecting previously unselected package libtasn1-6:armel. Preparing to unpack .../097-libtasn1-6_4.20.0-2_armel.deb ... Unpacking libtasn1-6:armel (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:armel. Preparing to unpack .../098-libgnutls30t64_3.8.10-2_armel.deb ... Unpacking libgnutls30t64:armel (3.8.10-2) ... Selecting previously unselected package libdb5.3t64:armel. Preparing to unpack .../099-libdb5.3t64_5.3.28+dfsg2-10_armel.deb ... Unpacking libdb5.3t64:armel (5.3.28+dfsg2-10) ... Selecting previously unselected package libsasl2-modules-db:armel. Preparing to unpack .../100-libsasl2-modules-db_2.1.28+dfsg1-10_armel.deb ... Unpacking libsasl2-modules-db:armel (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:armel. Preparing to unpack .../101-libsasl2-2_2.1.28+dfsg1-10_armel.deb ... Unpacking libsasl2-2:armel (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:armel. Preparing to unpack .../102-libldap2_2.6.10+dfsg-1_armel.deb ... Unpacking libldap2:armel (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:armel. Preparing to unpack .../103-libnghttp2-14_1.64.0-1.1+b1_armel.deb ... Unpacking libnghttp2-14:armel (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-9:armel. Preparing to unpack .../104-libnghttp3-9_1.12.0-1_armel.deb ... Unpacking libnghttp3-9:armel (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:armel. Preparing to unpack .../105-libngtcp2-16_1.16.0-1_armel.deb ... Unpacking libngtcp2-16:armel (1.16.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:armel. Preparing to unpack .../106-libngtcp2-crypto-gnutls8_1.16.0-1_armel.deb ... Unpacking libngtcp2-crypto-gnutls8:armel (1.16.0-1) ... Selecting previously unselected package libpsl5t64:armel. Preparing to unpack .../107-libpsl5t64_0.21.2-1.1+b1_armel.deb ... Unpacking libpsl5t64:armel (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:armel. Preparing to unpack .../108-librtmp1_2.4+20151223.gitfa8646d.1-3_armel.deb ... Unpacking librtmp1:armel (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:armel. Preparing to unpack .../109-libssh2-1t64_1.11.1-1_armel.deb ... Unpacking libssh2-1t64:armel (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:armel. Preparing to unpack .../110-libcurl3t64-gnutls_8.16.0-2_armel.deb ... Unpacking libcurl3t64-gnutls:armel (8.16.0-2) ... Selecting previously unselected package libevent-2.1-7t64:armel. Preparing to unpack .../111-libevent-2.1-7t64_2.1.12-stable-10+b1_armel.deb ... Unpacking libevent-2.1-7t64:armel (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:armel. Preparing to unpack .../112-libunbound8_1.24.0-2_armel.deb ... Unpacking libunbound8:armel (1.24.0-2) ... Selecting previously unselected package libgnutls-dane0t64:armel. Preparing to unpack .../113-libgnutls-dane0t64_3.8.10-2_armel.deb ... Unpacking libgnutls-dane0t64:armel (3.8.10-2) ... Selecting previously unselected package libgnutls-openssl27t64:armel. Preparing to unpack .../114-libgnutls-openssl27t64_3.8.10-2_armel.deb ... Unpacking libgnutls-openssl27t64:armel (3.8.10-2) ... Selecting previously unselected package libidn2-dev:armel. Preparing to unpack .../115-libidn2-dev_2.3.8-4_armel.deb ... Unpacking libidn2-dev:armel (2.3.8-4) ... Selecting previously unselected package libp11-kit-dev:armel. Preparing to unpack .../116-libp11-kit-dev_0.25.9-2_armel.deb ... Unpacking libp11-kit-dev:armel (0.25.9-2) ... Selecting previously unselected package libtasn1-6-dev:armel. Preparing to unpack .../117-libtasn1-6-dev_4.20.0-2_armel.deb ... Unpacking libtasn1-6-dev:armel (4.20.0-2) ... Selecting previously unselected package libgmpxx4ldbl:armel. Preparing to unpack .../118-libgmpxx4ldbl_2%3a6.3.0+dfsg-5_armel.deb ... Unpacking libgmpxx4ldbl:armel (2:6.3.0+dfsg-5) ... Selecting previously unselected package libgmp-dev:armel. Preparing to unpack .../119-libgmp-dev_2%3a6.3.0+dfsg-5_armel.deb ... Unpacking libgmp-dev:armel (2:6.3.0+dfsg-5) ... Selecting previously unselected package nettle-dev:armel. Preparing to unpack .../120-nettle-dev_3.10.2-1_armel.deb ... Unpacking nettle-dev:armel (3.10.2-1) ... Selecting previously unselected package libgnutls28-dev:armel. Preparing to unpack .../121-libgnutls28-dev_3.8.10-2_armel.deb ... Unpacking libgnutls28-dev:armel (3.8.10-2) ... Selecting previously unselected package libkrb5-dev:armel. Preparing to unpack .../122-libkrb5-dev_1.21.3-5_armel.deb ... Unpacking libkrb5-dev:armel (1.21.3-5) ... Selecting previously unselected package libldap-dev:armel. Preparing to unpack .../123-libldap-dev_2.6.10+dfsg-1_armel.deb ... Unpacking libldap-dev:armel (2.6.10+dfsg-1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../124-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../125-pkgconf-bin_1.8.1-4_amd64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:armel. Preparing to unpack .../126-pkgconf_1.8.1-4_armel.deb ... Unpacking pkgconf:armel (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:armel. Preparing to unpack .../127-libnghttp2-dev_1.64.0-1.1+b1_armel.deb ... Unpacking libnghttp2-dev:armel (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-dev:armel. Preparing to unpack .../128-libnghttp3-dev_1.12.0-1_armel.deb ... Unpacking libnghttp3-dev:armel (1.12.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:armel. Preparing to unpack .../129-libngtcp2-crypto-gnutls-dev_1.16.0-1_armel.deb ... Unpacking libngtcp2-crypto-gnutls-dev:armel (1.16.0-1) ... Selecting previously unselected package libngtcp2-dev:armel. Preparing to unpack .../130-libngtcp2-dev_1.16.0-1_armel.deb ... Unpacking libngtcp2-dev:armel (1.16.0-1) ... Selecting previously unselected package libpsl-dev:armel. Preparing to unpack .../131-libpsl-dev_0.21.2-1.1+b1_armel.deb ... Unpacking libpsl-dev:armel (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:armel. Preparing to unpack .../132-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armel.deb ... Unpacking zlib1g-dev:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:armel. Preparing to unpack .../133-librtmp-dev_2.4+20151223.gitfa8646d.1-3_armel.deb ... Unpacking librtmp-dev:armel (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssl-dev:armel. Preparing to unpack .../134-libssl-dev_3.5.4-1_armel.deb ... Unpacking libssl-dev:armel (3.5.4-1) ... Selecting previously unselected package libssh2-1-dev:armel. Preparing to unpack .../135-libssh2-1-dev_1.11.1-1_armel.deb ... Unpacking libssh2-1-dev:armel (1.11.1-1) ... Selecting previously unselected package libzstd-dev:armel. Preparing to unpack .../136-libzstd-dev_1.5.7+dfsg-2_armel.deb ... Unpacking libzstd-dev:armel (1.5.7+dfsg-2) ... Selecting previously unselected package libcurl4-gnutls-dev:armel. Preparing to unpack .../137-libcurl4-gnutls-dev_8.16.0-2_armel.deb ... Unpacking libcurl4-gnutls-dev:armel (8.16.0-2) ... Selecting previously unselected package libdeflate0:armel. Preparing to unpack .../138-libdeflate0_1.23-2_armel.deb ... Unpacking libdeflate0:armel (1.23-2) ... Selecting previously unselected package libdeflate-dev:armel. Preparing to unpack .../139-libdeflate-dev_1.23-2_armel.deb ... Unpacking libdeflate-dev:armel (1.23-2) ... Selecting previously unselected package libhtscodecs2:armel. Preparing to unpack .../140-libhtscodecs2_1.6.1-2_armel.deb ... Unpacking libhtscodecs2:armel (1.6.1-2) ... Selecting previously unselected package liblzma5:armel. Preparing to unpack .../141-liblzma5_5.8.1-2_armel.deb ... Unpacking liblzma5:armel (5.8.1-2) ... Selecting previously unselected package libhts3t64:armel. Preparing to unpack .../142-libhts3t64_1.22.1+ds2-1_armel.deb ... Unpacking libhts3t64:armel (1.22.1+ds2-1) ... Selecting previously unselected package liblzma-dev:armel. Preparing to unpack .../143-liblzma-dev_5.8.1-2_armel.deb ... Unpacking liblzma-dev:armel (5.8.1-2) ... Selecting previously unselected package libhts-dev:armel. Preparing to unpack .../144-libhts-dev_1.22.1+ds2-1_armel.deb ... Unpacking libhts-dev:armel (1.22.1+ds2-1) ... Selecting previously unselected package libtinfo6:armel. Preparing to unpack .../145-libtinfo6_6.5+20250216-2_armel.deb ... Unpacking libtinfo6:armel (6.5+20250216-2) ... Selecting previously unselected package libncurses6:armel. Preparing to unpack .../146-libncurses6_6.5+20250216-2_armel.deb ... Unpacking libncurses6:armel (6.5+20250216-2) ... Selecting previously unselected package libncursesw6:armel. Preparing to unpack .../147-libncursesw6_6.5+20250216-2_armel.deb ... Unpacking libncursesw6:armel (6.5+20250216-2) ... Selecting previously unselected package libncurses-dev:armel. Preparing to unpack .../148-libncurses-dev_6.5+20250216-2_armel.deb ... Unpacking libncurses-dev:armel (6.5+20250216-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../149-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up binutils-arm-linux-gnueabi (2.45-7) ... Setting up bsdextrautils (2.41.2-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:armel (14.3.0-8) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... Setting up gcc-15-cross-base-ports (15.2.0-4cross1) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libfakeroot:amd64 (1.37.1.2-1) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up linux-libc-dev-armel-cross (6.12.38-1cross1) ... Setting up fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20240727.1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up gcc-15-arm-linux-gnueabi-base:amd64 (15.2.0-4cross1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up autoconf (2.72-3.1) ... Setting up libc6-armel-cross (2.41-11cross1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up libc6-dev-armel-cross (2.41-11cross1) ... Setting up gcc-15-base:armel (15.2.0-4) ... Setting up cpp-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up readline-common (8.3-3) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgomp1-armel-cross (15.2.0-4cross1) ... Setting up libtool (2.5.4-5) ... Setting up libgcc-s1-armel-cross (15.2.0-4cross1) ... Setting up libstdc++6-armel-cross (15.2.0-4cross1) ... Setting up libatomic1-armel-cross (15.2.0-4cross1) ... Setting up pkgconf:armel (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21) ... Setting up cpp-arm-linux-gnueabi (4:15.2.0-4) ... Setting up libubsan1-armel-cross (15.2.0-4cross1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libasan8-armel-cross (15.2.0-4cross1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-15-dev-armel-cross (15.2.0-4cross1) ... Setting up gcc-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up bowtie (1.3.1-3) ... Setting up debhelper (13.28) ... Setting up libstdc++-15-dev-armel-cross (15.2.0-4cross1) ... Setting up gcc-arm-linux-gnueabi (4:15.2.0-4) ... Setting up g++-15-arm-linux-gnueabi (15.2.0-4cross1) ... Setting up g++-arm-linux-gnueabi (4:15.2.0-4) ... Setting up crossbuild-essential-armel (12.12) ... Setting up libgcc-s1:armel (15.2.0-4) ... Setting up libc6:armel (2.41-12) ... Setting up libnghttp3-9:armel (1.12.0-1) ... Setting up libnghttp3-dev:armel (1.12.0-1) ... Setting up libdb5.3t64:armel (5.3.28+dfsg2-10) ... Setting up libffi8:armel (3.5.2-2) ... Setting up libasan8:armel (15.2.0-4) ... Setting up libtasn1-6:armel (4.20.0-2) ... Setting up libngtcp2-16:armel (1.16.0-1) ... Setting up libbz2-1.0:armel (1.0.8-6) ... Setting up libtasn1-6-dev:armel (4.20.0-2) ... Setting up libstdc++6:armel (15.2.0-4) ... Setting up libtinfo6:armel (6.5+20250216-2) ... Setting up libhtscodecs2:armel (1.6.1-2) ... Setting up libzstd1:armel (1.5.7+dfsg-2) ... Setting up libkeyutils1:armel (1.6.3-6) ... Setting up libzstd-dev:armel (1.5.7+dfsg-2) ... Setting up liblzma5:armel (5.8.1-2) ... Setting up libbrotli1:armel (1.1.0-2+b7) ... Setting up libnghttp2-14:armel (1.64.0-1.1+b1) ... Setting up libdeflate0:armel (1.23-2) ... Setting up libevent-2.1-7t64:armel (2.1.12-stable-10+b1) ... Setting up zlib1g:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:armel (1:4.4.38-1) ... Setting up libcom-err2:armel (1.47.2-3+b3) ... Setting up libngtcp2-dev:armel (1.16.0-1) ... Setting up libgomp1:armel (15.2.0-4) ... Setting up libkrb5support0:armel (1.21.3-5) ... Setting up libsasl2-modules-db:armel (2.1.28+dfsg1-10) ... Setting up libnettle8t64:armel (3.10.2-1) ... Setting up libgmp10:armel (2:6.3.0+dfsg-5) ... Setting up libncurses6:armel (6.5+20250216-2) ... Setting up libp11-kit0:armel (0.25.9-2) ... Setting up libunistring5:armel (1.3-2) ... Setting up libatomic1:armel (15.2.0-4) ... Setting up libncursesw6:armel (6.5+20250216-2) ... Setting up libk5crypto3:armel (1.21.3-5) ... Setting up liblzma-dev:armel (5.8.1-2) ... Setting up libubsan1:armel (15.2.0-4) ... Setting up libhogweed6t64:armel (3.10.2-1) ... Setting up libcrypt-dev:armel (1:4.4.38-1) ... Setting up libc6-dev:armel (2.41-12) ... Setting up libgcc-14-dev:armel (14.3.0-8) ... Setting up libdeflate-dev:armel (1.23-2) ... Setting up libstdc++-14-dev:armel (14.3.0-8) ... Setting up libbrotli-dev:armel (1.1.0-2+b7) ... Setting up libp11-kit-dev:armel (0.25.9-2) ... Setting up libbz2-dev:armel (1.0.8-6) ... Setting up libnghttp2-dev:armel (1.64.0-1.1+b1) ... Setting up libboost1.83-dev:armel (1.83.0-5) ... Setting up libncurses-dev:armel (6.5+20250216-2) ... Setting up libssl3t64:armel (3.5.4-1) ... Setting up libidn2-0:armel (2.3.8-4) ... Setting up libunbound8:armel (1.24.0-2) ... Setting up libgmpxx4ldbl:armel (2:6.3.0+dfsg-5) ... Setting up comerr-dev:armel (2.1-1.47.2-3+b3) ... Setting up libssl-dev:armel (3.5.4-1) ... Setting up libidn2-dev:armel (2.3.8-4) ... Setting up libsasl2-2:armel (2.1.28+dfsg1-10) ... Setting up zlib1g-dev:armel (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libkrb5-3:armel (1.21.3-5) ... Setting up libboost-dev:armel (1.83.0.2+b2) ... Setting up libssh2-1t64:armel (1.11.1-1) ... Setting up libldap2:armel (2.6.10+dfsg-1) ... Setting up libgnutls30t64:armel (3.8.10-2) ... Setting up libgnutls-openssl27t64:armel (3.8.10-2) ... Setting up libgmp-dev:armel (2:6.3.0+dfsg-5) ... Setting up nettle-dev:armel (3.10.2-1) ... Setting up libpsl5t64:armel (0.21.2-1.1+b1) ... Setting up libpsl-dev:armel (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:armel (3.8.10-2) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-3) ... Setting up libldap-dev:armel (2.6.10+dfsg-1) ... Setting up libgssapi-krb5-2:armel (1.21.3-5) ... Setting up libssh2-1-dev:armel (1.11.1-1) ... Setting up libngtcp2-crypto-gnutls8:armel (1.16.0-1) ... Setting up libgnutls28-dev:armel (3.8.10-2) ... Setting up libcurl3t64-gnutls:armel (8.16.0-2) ... Setting up libngtcp2-crypto-gnutls-dev:armel (1.16.0-1) ... Setting up libgssrpc4t64:armel (1.21.3-5) ... Setting up librtmp-dev:armel (2.4+20151223.gitfa8646d.1-3) ... Setting up libhts3t64:armel (1.22.1+ds2-1) ... Setting up libkadm5clnt-mit12:armel (1.21.3-5) ... Setting up libkdb5-10t64:armel (1.21.3-5) ... Setting up libkadm5srv-mit12:armel (1.21.3-5) ... Setting up krb5-multidev:armel (1.21.3-5) ... Setting up libkrb5-dev:armel (1.21.3-5) ... Setting up libcurl4-gnutls-dev:armel (8.16.0-2) ... Setting up libhts-dev:armel (1.22.1+ds2-1) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.45-7 dpkg-dev_1.22.21 g++-15_15.2.0-4 gcc-15_15.2.0-4 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-8 libstdc++-15-dev_15.2.0-4 libstdc++-15-dev-armel-cross_15.2.0-4cross1 libstdc++6_15.2.0-4 libstdc++6-armel-cross_15.2.0-4cross1 linux-libc-dev_6.16.11-1 Package versions: apt_3.1.8 apt-utils_3.1.8 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 binutils_2.45-7 binutils-arm-linux-gnueabi_2.45-7 binutils-common_2.45-7 binutils-x86-64-linux-gnu_2.45-7 bowtie_1.3.1-3 bsdextrautils_2.41.2-3 bsdutils_1:2.41.2-3 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-3+b3 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-4 cpp-15-arm-linux-gnueabi_15.2.0-4cross1 cpp-15-x86-64-linux-gnu_15.2.0-4 cpp-arm-linux-gnueabi_4:15.2.0-4 cpp-x86-64-linux-gnu_4:15.2.0-4 crossbuild-essential-armel_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.10-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-4 g++-15-arm-linux-gnueabi_15.2.0-4cross1 g++-15-x86-64-linux-gnu_15.2.0-4 g++-arm-linux-gnueabi_4:15.2.0-4 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-14-base_14.3.0-8 gcc-15_15.2.0-4 gcc-15-arm-linux-gnueabi_15.2.0-4cross1 gcc-15-arm-linux-gnueabi-base_15.2.0-4cross1 gcc-15-base_15.2.0-4 gcc-15-cross-base-ports_15.2.0-4cross1 gcc-15-x86-64-linux-gnu_15.2.0-4 gcc-arm-linux-gnueabi_4:15.2.0-4 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.8 libarchive-zip-perl_1.68-1 libasan8_15.2.0-4 libasan8-armel-cross_15.2.0-4cross1 libatomic1_15.2.0-4 libatomic1-armel-cross_15.2.0-4cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-7 libblkid1_2.41.2-3 libboost-dev_1.83.0.2+b2 libboost1.83-dev_1.83.0-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-armel-cross_2.41-11cross1 libc6-dev_2.41-12 libc6-dev-armel-cross_2.41-11cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-4 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-7 libctf0_2.45-7 libcurl3t64-gnutls_8.16.0-2 libcurl4-gnutls-dev_8.16.0-2 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.280 libdebhelper-perl_13.28 libdeflate-dev_1.23-2 libdeflate0_1.23-2 libdpkg-perl_1.22.21 libelf1t64_0.193-3 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.3-1 libfakeroot_1.37.1.2-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-14-dev_14.3.0-8 libgcc-15-dev_15.2.0-4 libgcc-15-dev-armel-cross_15.2.0-4cross1 libgcc-s1_15.2.0-4 libgcc-s1-armel-cross_15.2.0-4cross1 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp-dev_2:6.3.0+dfsg-5 libgmp10_2:6.3.0+dfsg-5 libgmpxx4ldbl_2:6.3.0+dfsg-5 libgnutls-dane0t64_3.8.10-2 libgnutls-openssl27t64_3.8.10-2 libgnutls28-dev_3.8.10-2 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-4 libgomp1-armel-cross_15.2.0-4cross1 libgprofng0_2.45-7 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhogweed6t64_3.10.2-1 libhts-dev_1.22.1+ds2-1 libhts3t64_1.22.1+ds2-1 libhtscodecs2_1.6.1-2 libhwasan0_15.2.0-4 libidn2-0_2.3.8-4 libidn2-dev_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-4 libjansson4_2.14-2+b3 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 libldap-dev_2.6.10+dfsg-1 libldap2_2.6.10+dfsg-1 liblocale-gettext-perl_1.07-7+b1 liblsan0_15.2.0-4 liblz4-1_1.10.0-4 liblzma-dev_5.8.1-2 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-3 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncurses-dev_6.5+20250216-2 libncurses6_6.5+20250216-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp2-dev_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libnghttp3-dev_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-gnutls-dev_1.16.0-1 libngtcp2-crypto-gnutls8_1.16.0-1 libngtcp2-dev_1.16.0-1 libp11-kit-dev_0.25.9-2 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.13.7-1 libpython3.13-minimal_3.13.7-1 libpython3.13-stdlib_3.13.7-1 libquadmath0_15.2.0-4 libreadline8t64_8.3-3 librtmp-dev_2.4+20151223.gitfa8646d.1-3 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe2_2.45-7 libsmartcols1_2.41.2-3 libsqlite3-0_3.46.1-8 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.5.4-1 libssl3t64_3.5.4-1 libstdc++-14-dev_14.3.0-8 libstdc++-15-dev_15.2.0-4 libstdc++-15-dev-armel-cross_15.2.0-4cross1 libstdc++6_15.2.0-4 libstdc++6-armel-cross_15.2.0-4cross1 libsystemd0_258-1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-5 libtsan2_15.2.0-4 libubsan1_15.2.0-4 libubsan1-armel-cross_15.2.0-4cross1 libuchardet0_0.0.8-2 libudev1_258-1 libunbound8_1.24.0-2 libunistring5_1.3-2 libuuid1_2.41.2-3 libxml2-16_2.14.6+dfsg-0.1 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.16.11-1 linux-libc-dev-armel-cross_6.12.38-1cross1 login_1:4.16.0-2+really2.41.2-3 login.defs_1:4.18.0-1 m4_1.4.20-2 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_13.0.0 mount_2.41.2-3 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 nettle-dev_3.10.2-1 openssl-provider-legacy_3.5.4-1 passwd_1:4.18.0-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 python3_3.13.7-1 python3-minimal_3.13.7-1 python3.13_3.13.7-1 python3.13-minimal_3.13.7-1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-3 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: rsem Binary: rsem Architecture: any Version: 1.3.3+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://deweylab.github.io/RSEM/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/rsem Vcs-Git: https://salsa.debian.org/med-team/rsem.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libncurses-dev, libboost-dev, perl , python3:any, help2man, libhts-dev, hisat2 , bowtie | bowtie2 Package-List: rsem deb science optional arch=any Checksums-Sha1: 5565e925e1efe216153215392b623d655ab513bf 275380 rsem_1.3.3+dfsg.orig.tar.xz 05cea0dbf74cb2855055322ee7ec48f022ac1a9a 35660968 rsem_1.3.3+dfsg-3.debian.tar.xz Checksums-Sha256: 43037765382f8942a03595eb12ee2ed68081f9f828cb2832388354a12ee00990 275380 rsem_1.3.3+dfsg.orig.tar.xz 957be6fa620d1a09db0e41fe6207d56ee60a8e938f5a594176c068d78e063204 35660968 rsem_1.3.3+dfsg-3.debian.tar.xz Files: 59bba49e9d7bba287320c5125d84e8bd 275380 rsem_1.3.3+dfsg.orig.tar.xz 4371920046ae5a0f654c8cae94a84c0c 35660968 rsem_1.3.3+dfsg-3.debian.tar.xz Dgit: 87fe4c33d81e96bb4704a476dde491ef3207ab24 debian archive/debian/1.3.3+dfsg-3 https://git.dgit.debian.org/rsem -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWAQ20UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdokyQ//SNKe4BXEPLVFcAVF/7TrICkowWQ8 nzkIT5MS2BDq9HSbt3lb7XTbZ6g6gVQ5xLsBwgBLllWrcZPfipfuDrxSxku5gERB i9Fxyte8uqE97LX1AYiy4+Xbx/k8dOm97V3mwh6AVvV3zjP7OiUuhTR2xxTtV1A6 vv1YFYCph1kR91f2ZjzVr1NkKMGNxpe1UGQ002GNWgYVsp0Q36QfF5RJp8r18LWf bJn/j32atSIOO7IM28F8/x75OIBCgOPEDgAgEUWwl4S9lS+jxQCkXE5w9R+LAEl8 czo9H1iSAK9bAN+6SYQiL7pxkxUljaH8JhRoDJhKqDE3Df5mF51ATdwPzg7r7yam XFX5P9B5ViAd6CaOoWsF97M/FY1EnvL08ZxGILEgyliksi+1ye8UxT5T453yXwZm ajo2YBH/l0lm+/k861MMnssMcSkmeT5fTatn0g6RGUgdbMmjE5JnZxN5flJ+qNzC RobpHL4SLihWT7BDDogOSXMYnIByAMfrPiwSaG3do6/wa1+XfRMW5mzcA6Cyj+MY vFXjFL7i9FXJfYfyGNjSKOXrw3w2fw9QpP13QNkKawqoCfJ12EhrHni7oEqAg4J0 LNPU18sMMmki52BblJ4VN2rEimp0QxFGsZwBVvJvXqeUg0fdU0I97paVzcqFFMVT m+l1fDNky96/wR4= =j51B -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./rsem_1.3.3+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting rsem in /<> dpkg-source: info: unpacking rsem_1.3.3+dfsg.orig.tar.xz dpkg-source: info: unpacking rsem_1.3.3+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening dpkg-source: info: applying use_debian_packaged_samtools.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying stdgnu++11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.KNempJJGcQ/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-526a08a0-8e77-4a97-8b68-33507743cddc SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package rsem dpkg-buildpackage: info: source version 1.3.3+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f *.o *~ rsem-extract-reference-transcripts rsem-synthesis-reference-transcripts rsem-preref rsem-build-read-index rsem-simulate-reads rsem-parse-alignments rsem-run-em rsem-tbam2gbam rsem-bam2wig rsem-bam2readdepth rsem-get-unique rsem-sam-validator rsem-scan-for-paired-end-reads rsem-run-gibbs rsem-calculate-credibility-intervals cd EBSeq && make clean make[2]: Entering directory '/<>/EBSeq' rm -rf EBSeq rsem-for-ebseq-calculate-clustering-info blockmodeling gplots gtools gdata caTools bitops KernSmooth BiocInstaller *~ make[2]: Leaving directory '/<>/EBSeq' cd pRSEM && make clean make[2]: Entering directory '/<>/pRSEM' rm -fr bigWigSummary RLib filterSam2Bed *.pyc make[2]: Leaving directory '/<>/pRSEM' make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- BOOST=/usr/include prefix=debian/tmp make -j1 INSTALL="install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc BOOST=/usr/include prefix=debian/tmp make[2]: Entering directory '/<>' arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o extractRef.o extractRef.cpp arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -o rsem-extract-reference-transcripts extractRef.o arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o synthesisRef.o synthesisRef.cpp arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -o rsem-synthesis-reference-transcripts synthesisRef.o arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o preRef.o preRef.cpp arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -o rsem-preref preRef.o arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o buildReadIndex.o buildReadIndex.cpp arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -o rsem-build-read-index buildReadIndex.o arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -ffast-math -c -o simulation.o simulation.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from LenDist.h:10, from SingleModel.h:17, from simulation.cpp:22: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from simulation.cpp:13: utils.h: In member function ‘void PairedEndModel::estimateFromReads(const char*)’: utils.h:146:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 146 | sprintf(readFs[0], "%s_%s_1.%s", readFN, tags[tagType], suffix); | ^~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:970, from /usr/arm-linux-gnueabi/include/c++/15/cstdio:47, from simulation.cpp:3: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:146:10, inlined from ‘void PairedEndModel::estimateFromReads(const char*)’ at PairedEndModel.h:245:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 30021) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void PairedEndModel::estimateFromReads(const char*)’: utils.h:147:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 10004 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:147:10, inlined from ‘void PairedEndModel::estimateFromReads(const char*)’ at PairedEndModel.h:245:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void PairedEndQModel::estimateFromReads(const char*)’: utils.h:146:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 146 | sprintf(readFs[0], "%s_%s_1.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:146:10, inlined from ‘void PairedEndQModel::estimateFromReads(const char*)’ at PairedEndQModel.h:251:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 30021) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void PairedEndQModel::estimateFromReads(const char*)’: utils.h:147:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 10004 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:147:10, inlined from ‘void PairedEndQModel::estimateFromReads(const char*)’ at PairedEndQModel.h:251:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void SingleModel::estimateFromReads(const char*)’: utils.h:142:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:142:10, inlined from ‘void SingleModel::estimateFromReads(const char*)’ at SingleModel.h:284:20: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void SingleQModel::estimateFromReads(const char*)’: utils.h:142:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:142:10, inlined from ‘void SingleQModel::estimateFromReads(const char*)’ at SingleQModel.h:294:20: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -o rsem-simulate-reads simulation.o arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -c -o parseIt.o parseIt.cpp In file included from SamParser.h:13, from parseIt.cpp:27: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/15/map:64, from parseIt.cpp:11: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_tree.h:3080:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 3080 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/15/map:65: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void parseIt(SamParser*) [with ReadType = SingleRead; HitType = SingleHit]’ at parseIt.cpp:113:13: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_map.h:555:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 555 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void parseIt(SamParser*) [with ReadType = SingleRead; HitType = SingleHit]’ at parseIt.cpp:147:11: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_map.h:555:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 555 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void parseIt(SamParser*) [with ReadType = PairedEndRead; HitType = PairedEndHit]’ at parseIt.cpp:113:13: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_map.h:555:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 555 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void parseIt(SamParser*) [with ReadType = PairedEndRead; HitType = PairedEndHit]’ at parseIt.cpp:147:11: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_map.h:555:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 555 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void parseIt(SamParser*) [with ReadType = SingleReadQ; HitType = SingleHit]’ at parseIt.cpp:113:13: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_map.h:555:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 555 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void parseIt(SamParser*) [with ReadType = SingleReadQ; HitType = SingleHit]’ at parseIt.cpp:147:11: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_map.h:555:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 555 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void parseIt(SamParser*) [with ReadType = PairedEndReadQ; HitType = PairedEndHit]’ at parseIt.cpp:113:13: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_map.h:555:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 555 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = long long unsigned int; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void parseIt(SamParser*) [with ReadType = PairedEndReadQ; HitType = PairedEndHit]’ at parseIt.cpp:147:11: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_map.h:555:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 555 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 | std::tuple<>()); | ~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-parse-alignments parseIt.o -lhts -lz arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -ffast-math -c -o EM.o EM.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from LenDist.h:10, from SingleModel.h:17, from EM.cpp:28: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from BamWriter.h:14, from EM.cpp:45: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ BamWriter.h: In constructor ‘BamWriter::BamWriter(const char*, const char*, const char*, Transcripts&, int)’: BamWriter.h:70:16: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | sam_hdr_write(out, out_header); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BamWriter.h: In member function ‘void BamWriter::work(HitWrapper)’: BamWriter.h:101:27: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 101 | sam_write1(out, out_header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BamWriter.h: In member function ‘void BamWriter::work(HitWrapper)’: BamWriter.h:136:27: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | sam_write1(out, out_header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BamWriter.h:137:27: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 137 | sam_write1(out, out_header, b2); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘int main(int, char**)’: EM.cpp:635:31: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 635 | system(command); | ~~~~~~^~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/15/vector:74, from EM.cpp:8: /usr/arm-linux-gnueabi/include/c++/15/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/15/bits/vector.tcc:652:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 652 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/15/vector:68: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_vector.h:1167:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’: EM.cpp:127:26: warning: ‘.dat’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 127 | sprintf(datF, "%s.dat", imdName); | ^~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:970, from /usr/arm-linux-gnueabi/include/c++/15/cstdio:47, from EM.cpp:3: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’ at EM.cpp:127:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’: EM.cpp:435:45: warning: ‘.ofg’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 435 | sprintf(out_for_gibbs_F, "%s.ofg", imdName); | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’ at EM.cpp:435:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’: EM.cpp:484:28: warning: ‘.theta’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 484 | sprintf(thetaF, "%s.theta", statName); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’ at EM.cpp:484:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’: EM.cpp:282:22: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 282 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void writeResults(ModelType&, double*) [with ModelType = PairedEndQModel]’ at EM.cpp:282:10, inlined from ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’ at EM.cpp:502:25: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’: EM.cpp:505:37: warning: ‘.transcript.bam’ directive writing 15 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 505 | sprintf(outBamF, "%s.transcript.bam", outName); | ^~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’ at EM.cpp:505:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 16 and 10020 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void EM() [with ReadType = PairedEndReadQ; HitType = PairedEndHit; ModelType = PairedEndQModel]’ at EM.cpp:339:14: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_vector.h:1167:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’: EM.cpp:127:26: warning: ‘.dat’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 127 | sprintf(datF, "%s.dat", imdName); | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’ at EM.cpp:127:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’: EM.cpp:435:45: warning: ‘.ofg’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 435 | sprintf(out_for_gibbs_F, "%s.ofg", imdName); | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’ at EM.cpp:435:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’: EM.cpp:484:28: warning: ‘.theta’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 484 | sprintf(thetaF, "%s.theta", statName); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’ at EM.cpp:484:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’: EM.cpp:282:22: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 282 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void writeResults(ModelType&, double*) [with ModelType = SingleQModel]’ at EM.cpp:282:10, inlined from ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’ at EM.cpp:502:25: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’: EM.cpp:505:37: warning: ‘.transcript.bam’ directive writing 15 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 505 | sprintf(outBamF, "%s.transcript.bam", outName); | ^~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’ at EM.cpp:505:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 16 and 10020 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void EM() [with ReadType = SingleReadQ; HitType = SingleHit; ModelType = SingleQModel]’ at EM.cpp:339:14: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_vector.h:1167:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’: EM.cpp:127:26: warning: ‘.dat’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 127 | sprintf(datF, "%s.dat", imdName); | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’ at EM.cpp:127:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’: EM.cpp:435:45: warning: ‘.ofg’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 435 | sprintf(out_for_gibbs_F, "%s.ofg", imdName); | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’ at EM.cpp:435:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’: EM.cpp:484:28: warning: ‘.theta’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 484 | sprintf(thetaF, "%s.theta", statName); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’ at EM.cpp:484:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’: EM.cpp:282:22: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 282 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void writeResults(ModelType&, double*) [with ModelType = SingleModel]’ at EM.cpp:282:10, inlined from ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’ at EM.cpp:502:25: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’: EM.cpp:505:37: warning: ‘.transcript.bam’ directive writing 15 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 505 | sprintf(outBamF, "%s.transcript.bam", outName); | ^~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’ at EM.cpp:505:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 16 and 10020 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void EM() [with ReadType = SingleRead; HitType = SingleHit; ModelType = SingleModel]’ at EM.cpp:339:14: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_vector.h:1167:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’: EM.cpp:127:26: warning: ‘.dat’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 127 | sprintf(datF, "%s.dat", imdName); | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void init(ReadReader**&, HitContainer**&, double**&, ModelType**&) [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’ at EM.cpp:127:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’: EM.cpp:435:45: warning: ‘.ofg’ directive writing 4 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 435 | sprintf(out_for_gibbs_F, "%s.ofg", imdName); | ^~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’ at EM.cpp:435:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10009 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’: EM.cpp:484:28: warning: ‘.theta’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 484 | sprintf(thetaF, "%s.theta", statName); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’ at EM.cpp:484:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’: EM.cpp:282:22: warning: ‘.model’ directive writing 6 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 282 | sprintf(modelF, "%s.model", statName); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void writeResults(ModelType&, double*) [with ModelType = PairedEndModel]’ at EM.cpp:282:10, inlined from ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’ at EM.cpp:502:25: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 7 and 10011 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’: EM.cpp:505:37: warning: ‘.transcript.bam’ directive writing 15 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 505 | sprintf(outBamF, "%s.transcript.bam", outName); | ^~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’ at EM.cpp:505:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 16 and 10020 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void EM() [with ReadType = PairedEndRead; HitType = PairedEndHit; ModelType = PairedEndModel]’ at EM.cpp:339:14: /usr/arm-linux-gnueabi/include/c++/15/bits/stl_vector.h:1167:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EM.cpp: In function ‘int main(int, char**)’: EM.cpp:633:49: warning: ‘%s’ directive writing up to 10004 bytes into a region of size 1001 [-Wformat-overflow=] 633 | sprintf(command, "cp %s %s", inpSamF, outBamF); | ^~ ~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int main(int, char**)’ at EM.cpp:633:11: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 10009) into a destination of size 1005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o SamHeader.o SamHeader.cpp arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-run-em EM.o SamHeader.o -lhts -lz arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o tbam2gbam.o tbam2gbam.cpp In file included from BamConverter.h:12, from tbam2gbam.cpp:8: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ BamConverter.h: In constructor ‘BamConverter::BamConverter(const char*, const char*, const char*, Transcripts&, int, const std::string&)’: BamConverter.h:70:22: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | sam_hdr_write(out, out_header); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ BamConverter.h: In member function ‘void BamConverter::process()’: BamConverter.h:137:29: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 137 | sam_write1(out, out_header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ BamConverter.h:138:43: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 138 | if (isPaired) sam_write1(out, out_header, b2); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ BamConverter.h: In member function ‘void BamConverter::writeCollapsedLines()’: BamConverter.h:208:35: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 208 | sam_write1(out, out_header, tmp_b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ BamConverter.h:212:43: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | sam_write1(out, out_header, tmp_b2); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-tbam2gbam tbam2gbam.o SamHeader.o -lhts -lz arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o bam2wig.o bam2wig.cpp arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o wiggle.o wiggle.cpp In file included from wiggle.cpp:8: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-bam2wig bam2wig.o wiggle.o -lhts -lz arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o bam2readdepth.o bam2readdepth.cpp arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-bam2readdepth bam2readdepth.o wiggle.o -lhts -lz arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o getUnique.o getUnique.cpp In file included from getUnique.cpp:10: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ getUnique.cpp: In function ‘void output()’: getUnique.cpp:29:59: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 29 | for (size_t i = 0; i < arr.size(); ++i) sam_write1(out, header, arr[i]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ getUnique.cpp: In function ‘int main(int, char**)’: getUnique.cpp:45:22: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 45 | sam_hdr_write(out, header); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-get-unique getUnique.o -lhts -lz arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o samValidator.o samValidator.cpp In file included from samValidator.cpp:11: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ samValidator.cpp: In function ‘bool check_read(bam1_t*, bam_hdr_t*)’: samValidator.cpp:28:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 28 | for (int i = 0; i < b->core.n_cigar; ++i) { | ~~^~~~~~~~~~~~~~~~~ samValidator.cpp:53:38: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=] 53 | printf(" aligns to [%d, %d) of transcript %s, which exceeds the transcript's boundary [0, %d)!\n", | ~^ | | | int | %lld 54 | b->core.pos, bam_endpos(b), header->target_name[b->core.tid], header->target_len[b->core.tid]); | ~~~~~~~~~~~ | | | hts_pos_t {aka long long int} samValidator.cpp:53:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=] 53 | printf(" aligns to [%d, %d) of transcript %s, which exceeds the transcript's boundary [0, %d)!\n", | ~^ | | | int | %lld 54 | b->core.pos, bam_endpos(b), header->target_name[b->core.tid], header->target_len[b->core.tid]); | ~~~~~~~~~~~~~ | | | hts_pos_t {aka long long int} samValidator.cpp: In function ‘int main(int, char**)’: samValidator.cpp:145:82: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=] 145 | printf("\nPaired-end read %s aligns to [%d, %d) of transcript %s, which exceeds the transcript's boundary [0, %d)!\n", | ~^ | | | int | %lld 146 | bam_get_qname(b), tb->core.pos, tb->core.pos + abs(tb->core.isize), header->target_name[tb->core.tid], header->target_len[tb->core.tid]); | ~~~~~~~~~~~~ | | | hts_pos_t {aka long long int} samValidator.cpp:145:86: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=] 145 | printf("\nPaired-end read %s aligns to [%d, %d) of transcript %s, which exceeds the transcript's boundary [0, %d)!\n", | ~^ | | | int | %lld 146 | bam_get_qname(b), tb->core.pos, tb->core.pos + abs(tb->core.isize), header->target_name[tb->core.tid], header->target_len[tb->core.tid]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | hts_pos_t {aka long long int} arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-sam-validator samValidator.o -lhts -lz arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -c -o scanForPairedEndReads.o scanForPairedEndReads.cpp In file included from scanForPairedEndReads.cpp:11: sam_utils.h: In function ‘void expand_data_size(bam1_t*)’: sam_utils.h:34:17: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 34 | if (b->m_data < b->l_data) { | ~~~~~~~~~~^~~~~~~~~~~ scanForPairedEndReads.cpp: In function ‘int main(int, char**)’: scanForPairedEndReads.cpp:66:22: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const sam_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 66 | sam_hdr_write(out, header); | ~~~~~~~~~~~~~^~~~~~~~~~~~~ scanForPairedEndReads.cpp:94:72: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 94 | for (size_t i = 0; i < arr_both.size(); i++) { sam_write1(out, header, arr_both[i]); bam_destroy1(arr_both[i]); } | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:100:27: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | sam_write1(out, header, arr_partial_1.back()); bam_destroy1(arr_partial_1.back()); arr_partial_1.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:101:27: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 101 | sam_write1(out, header, arr_partial_2.back()); bam_destroy1(arr_partial_2.back()); arr_partial_2.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:104:27: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 104 | sam_write1(out, header, arr_partial_1.back()); bam_destroy1(arr_partial_1.back()); arr_partial_1.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:105:27: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 105 | sam_write1(out, header, arr_partial_unknown.back()); bam_destroy1(arr_partial_unknown.back()); arr_partial_unknown.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:108:27: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 108 | sam_write1(out, header, arr_partial_2.back()); bam_destroy1(arr_partial_2.back()); arr_partial_2.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:109:27: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 109 | sam_write1(out, header, arr_partial_unknown.back()); bam_destroy1(arr_partial_unknown.back()); arr_partial_unknown.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:114:25: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 114 | sam_write1(out, header, arr_partial_unknown.back()); bam_destroy1(arr_partial_unknown.back()); arr_partial_unknown.pop_back(); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:118:23: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 118 | sam_write1(out, header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ scanForPairedEndReads.cpp:120:25: warning: ignoring return value of ‘int sam_write1(samFile*, const sam_hdr_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 120 | sam_write1(out, header, b); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-scan-for-paired-end-reads scanForPairedEndReads.o -lhts -lz arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -ffast-math -c -o Gibbs.o Gibbs.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from LenDist.h:10, from SingleModel.h:17, from Gibbs.cpp:15: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ Gibbs.cpp: In function ‘void init()’: Gibbs.cpp:214:26: warning: ‘.countvectors’ directive writing 13 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 214 | sprintf(cvsF, "%s.countvectors", imdName); | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:970, from /usr/arm-linux-gnueabi/include/c++/15/cstdio:47, from Gibbs.cpp:1: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void init()’ at Gibbs.cpp:214:9: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 14 and 10018 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ Gibbs.cpp: In function ‘void init()’: Gibbs.cpp:225:34: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 225 | sprintf(outF, "%s%d", cvsF, i); | ^~ Gibbs.cpp:225:31: note: directive argument in the range [0, 2147483646] 225 | sprintf(outF, "%s%d", cvsF, i); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void init()’ at Gibbs.cpp:225:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from Gibbs.cpp:10: utils.h: In member function ‘void PairedEndModel::estimateFromReads(const char*)’: utils.h:146:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 146 | sprintf(readFs[0], "%s_%s_1.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:146:10, inlined from ‘void PairedEndModel::estimateFromReads(const char*)’ at PairedEndModel.h:245:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 30021) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void PairedEndModel::estimateFromReads(const char*)’: utils.h:147:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 10004 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:147:10, inlined from ‘void PairedEndModel::estimateFromReads(const char*)’ at PairedEndModel.h:245:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void PairedEndQModel::estimateFromReads(const char*)’: utils.h:146:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 146 | sprintf(readFs[0], "%s_%s_1.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:146:10, inlined from ‘void PairedEndQModel::estimateFromReads(const char*)’ at PairedEndQModel.h:251:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 30021) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void PairedEndQModel::estimateFromReads(const char*)’: utils.h:147:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 10004 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:147:10, inlined from ‘void PairedEndQModel::estimateFromReads(const char*)’ at PairedEndQModel.h:251:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void SingleModel::estimateFromReads(const char*)’: utils.h:142:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:142:10, inlined from ‘void SingleModel::estimateFromReads(const char*)’ at SingleModel.h:284:20: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void SingleQModel::estimateFromReads(const char*)’: utils.h:142:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:142:10, inlined from ‘void SingleQModel::estimateFromReads(const char*)’ at SingleQModel.h:294:20: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-run-gibbs Gibbs.o -lhts arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++11 -Wall -I. -I/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -ffast-math -c -o calcCI.o calcCI.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from LenDist.h:10, from SingleModel.h:17, from calcCI.cpp:16: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ calcCI.cpp: In function ‘void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndQModel]’: calcCI.cpp:183:34: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~ calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:970, from /usr/arm-linux-gnueabi/include/c++/15/cstdio:47, from calcCI.cpp:2: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndQModel]’ at calcCI.cpp:183:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ calcCI.cpp: In function ‘void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndQModel]’: calcCI.cpp:183:36: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndQModel]’ at calcCI.cpp:183:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10006 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ calcCI.cpp: In function ‘void sample_theta_vectors_from_count_vectors() [with ModelType = SingleModel]’: calcCI.cpp:183:34: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~ calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void sample_theta_vectors_from_count_vectors() [with ModelType = SingleModel]’ at calcCI.cpp:183:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ calcCI.cpp: In function ‘void sample_theta_vectors_from_count_vectors() [with ModelType = SingleQModel]’: calcCI.cpp:183:34: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~ calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void sample_theta_vectors_from_count_vectors() [with ModelType = SingleQModel]’ at calcCI.cpp:183:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ calcCI.cpp: In function ‘void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndModel]’: calcCI.cpp:183:34: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 1 and 10005 [-Wformat-overflow=] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~ calcCI.cpp:183:31: note: directive argument in the range [0, 2147483646] 183 | sprintf(inpF, "%s%d", cvsF, i); | ^~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void sample_theta_vectors_from_count_vectors() [with ModelType = PairedEndModel]’ at calcCI.cpp:183:10: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 10015 bytes into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from calcCI.cpp:11: utils.h: In member function ‘void PairedEndModel::estimateFromReads(const char*)’: utils.h:146:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 146 | sprintf(readFs[0], "%s_%s_1.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:146:10, inlined from ‘void PairedEndModel::estimateFromReads(const char*)’ at PairedEndModel.h:245:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 30021) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void PairedEndModel::estimateFromReads(const char*)’: utils.h:147:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 10004 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:147:10, inlined from ‘void PairedEndModel::estimateFromReads(const char*)’ at PairedEndModel.h:245:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void PairedEndQModel::estimateFromReads(const char*)’: utils.h:146:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 146 | sprintf(readFs[0], "%s_%s_1.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:146:10, inlined from ‘void PairedEndQModel::estimateFromReads(const char*)’ at PairedEndQModel.h:251:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 30021) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void PairedEndQModel::estimateFromReads(const char*)’: utils.h:147:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 10004 [-Wformat-overflow=] 147 | sprintf(readFs[1], "%s_%s_2.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:147:10, inlined from ‘void PairedEndQModel::estimateFromReads(const char*)’ at PairedEndQModel.h:251:23: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 10005 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void SingleModel::estimateFromReads(const char*)’: utils.h:142:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:142:10, inlined from ‘void SingleModel::estimateFromReads(const char*)’ at SingleModel.h:284:20: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utils.h: In member function ‘void SingleQModel::estimateFromReads(const char*)’: utils.h:142:40: warning: ‘%s’ directive writing up to 30014 bytes into a region of size 20009 [-Wformat-overflow=] 142 | sprintf(readFs[0], "%s_%s.%s", readFN, tags[tagType], suffix); | ^~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void genReadFileNames(const char*, int, int, int&, char (*)[10005])’ at utils.h:142:10, inlined from ‘void SingleQModel::estimateFromReads(const char*)’ at SingleQModel.h:294:20: /usr/arm-linux-gnueabi/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 5 or more bytes (assuming 30019) into a destination of size 20010 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-g++ -Wl,-z,relro -Wl,-z,now -pthread -o rsem-calculate-credibility-intervals calcCI.o -lhts make[2]: Leaving directory '/<>' for prog in convert-sam-for-rsem rsem-calculate-expression \ rsem-control-fdr rsem-generate-ngvector \ rsem-plot-transcript-wiggles rsem-prepare-reference \ rsem-run-ebseq; do pod2man ${prog} debian/${prog}.1; done help2man ./rsem-gff3-to-gtf --no-info --version-string="1.3.3+dfsg" \ --name 'Convert GFF3 files to GTF files.' > \ debian/rsem-gff3-to-gtf.1 help2man ./rsem-bam2wig --no-info --version-string="1.3.3+dfsg" \ --name 'Convert BAM files to wiggle files.' > \ debian/rsem-bam2wig.1 help2man: can't get `--help' info from ./rsem-bam2wig Try `--no-discard-stderr' if option outputs to stderr make[1]: *** [debian/rules:16: override_dh_auto_build] Error 126 make[1]: Leaving directory '/<>' make: *** [debian/rules:10: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-10-07T23:06:20Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ------------------------------------------ I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 90 Distribution: unstable Fail-Stage: build Foreign Architectures: armel Host Architecture: armel Install-Time: 17 Job: rsem_1.3.3+dfsg-3 Machine Architecture: amd64 Package: rsem Package-Time: 126 Source-Version: 1.3.3+dfsg-3 Space: n/a Status: attempted Version: 1.3.3+dfsg-3 -------------------------------------------------------------------------------- Finished at 2025-10-07T23:06:20Z Build needed 00:02:06, no disk space