sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | samtools 1.10-3 (armel) Fri, 27 Dec 2019 21:23:07 +0000 | +==============================================================================+ Package: samtools Version: 1.10-3 Source Version: 1.10-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-337ac70b-0829-4ae1-b5d4-dc0085bcd47a' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-OcBj9E/resolver-x0s4EZ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-27-0815.12.pdiff [9713 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-27-1417.09.pdiff [12.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-27-2015.57.pdiff [18.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-12-27-2015.57.pdiff [18.6 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-27-0815.12.pdiff [8159 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-27-1417.09.pdiff [11.0 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-27-2015.57.pdiff [22.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-12-27-2015.57.pdiff [22.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armel Packages [7889 kB] Fetched 8170 kB in 2s (4199 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: mawk 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 85.7 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 mawk amd64 1.3.3-18 [85.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.7 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15014 files and directories currently installed.) Preparing to unpack .../mawk_1.3.3-18_amd64.deb ... Unpacking mawk (1.3.3-18) over (1.3.3-17+b3) ... Setting up mawk (1.3.3-18) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/samtools.git Please use: git clone https://salsa.debian.org/med-team/samtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4480 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main samtools 1.10-3 (dsc) [2223 B] Get:2 http://debian.oregonstate.edu/debian unstable/main samtools 1.10-3 (tar) [4458 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main samtools 1.10-3 (diff) [20.2 kB] Fetched 4480 kB in 0s (48.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/samtools-OcBj9E/samtools-1.10' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-OcBj9E' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), bash-completion, libncurses5-dev, libhts-dev (>= 1.10), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 12), bash-completion, libncurses5-dev, libhts-dev (>= 1.10), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [495 B] Get:5 copy:/<>/apt_archive ./ Packages [565 B] Fetched 2017 B in 0s (116 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbsd0 libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt1:armel libcrypt1-dev:armel libcurl3-gnutls:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:armel libelf1 libffi6:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libgcrypt20:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgpg-error0:armel libgssapi-krb5-2:armel libhogweed5:armel libhts-dev:armel libhts3:armel libicu63 libidn2-0:armel libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.4-2:armel libldap-common liblocale-gettext-perl liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1 libncurses-dev:armel libncurses5-dev:armel libncurses6:armel libncursesw6:armel libnettle7:armel libnghttp2-14:armel libp11-kit0:armel libpipeline1 libpsl5:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsigsegv2 libssh2-1:armel libssl1.1:armel libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtinfo6:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db pkg-config po-debconf sensible-utils tabix:armel ucf zlib1g:armel zlib1g-dev:armel Suggested packages: gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel rng-tools:armel gnutls-bin:armel krb5-doc:armel krb5-user:armel liblzma-doc:armel ncurses-doc:armel libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:armel ca-certificates:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:armel krb5-locales:armel libgpm2:armel publicsuffix:armel libsasl2-modules:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1:armel libbsd0 libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt1:armel libcrypt1-dev:armel libcurl3-gnutls:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:armel libelf1 libffi6:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libgcrypt20:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgpg-error0:armel libgssapi-krb5-2:armel libhogweed5:armel libhts-dev:armel libhts3:armel libicu63 libidn2-0:armel libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.4-2:armel libldap-common liblocale-gettext-perl liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1 libncurses-dev:armel libncurses5-dev:armel libncurses6:armel libncursesw6:armel libnettle7:armel libnghttp2-14:armel libp11-kit0:armel libpipeline1 libpsl5:armel librtmp1:armel libsasl2-2:armel libsasl2-modules-db:armel libsigsegv2 libssh2-1:armel libssl1.1:armel libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtasn1-6:armel libtinfo6:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db pkg-config po-debconf sbuild-build-depends-main-dummy:armel sensible-utils tabix:armel ucf zlib1g:armel zlib1g-dev:armel 0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 76.9 MB of archives. After this operation, 283 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [996 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-3 [32.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf-archive all 20190106-2 [749 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.2.1-21 [194 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 bash-completion all 1:2.9-1 [224 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-6 [253 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-6 [119 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-6 [67.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.33.1-6 [2720 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.2.1-21cross1 [195 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.2.1-21cross1 [6813 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-21cross1 [190 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.29-1cross7 [1139 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.2.1-21cross1 [39.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.2.1-21cross1 [75.1 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.2.1-21cross1 [8880 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.2.1-21cross1 [341 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.2.1-21cross1 [376 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.2.1-21cross1 [110 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.2.1-21cross1 [644 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.2.1-21cross1 [7157 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.2.9-2cross7 [1312 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.29-1cross7 [2155 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.2.1-21cross1 [1709 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.2.1-21cross1 [7392 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.2 [174 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-1 [14.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.3-2 [1320 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.2 [1018 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.2.1-21 [39.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.10-7 [100 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.29-6 [2334 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.2.1-21 [347 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.2.1-21 [9080 B] Get:81 http://debian.oregonstate.edu/debian unstable/main armel libbrotli1 armel 1.0.7-5+b1 [261 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armel libbz2-1.0 armel 1.0.8-2 [45.3 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.3.15-1 [998 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1-dev armel 1:4.4.10-7 [120 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.29-6 [2185 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armel libbz2-dev armel 1.0.8-2 [28.2 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.45.4-1 [70.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libgmp10 armel 2:6.1.2+dfsg-4 [197 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel libnettle7 armel 3.5.1+really3.5.1-2 [232 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libhogweed5 armel 3.5.1+really3.5.1-2 [127 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel libunistring2 armel 0.9.10-2 [364 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libidn2-0 armel 2.2.0-2 [80.1 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libffi6 armel 3.2.1-9 [18.7 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armel libp11-kit0 armel 0.23.18.1-2 [305 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armel libtasn1-6 armel 4.15.0-2 [49.1 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel libgnutls30 armel 3.6.11.1-2 [1102 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.6-6 [14.0 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.17-6 [61.2 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.17-6 [112 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libssl1.1 armel 1.1.1d-2 [1274 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.17-6 [320 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.17-6 [134 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libdb5.3 armel 5.3.28+dfsg1-0.6 [572 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-modules-db armel 2.1.27+dfsg-2 [67.6 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-2 armel 2.1.27+dfsg-2 [98.7 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armel libldap-2.4-2 armel 2.4.48+dfsg-1+b2 [202 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libnghttp2-14 armel 1.40.0-1 [74.0 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armel libpsl5 armel 0.20.2-2 [52.5 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-1+b1 [84.7 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2+b1 [55.3 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armel libgpg-error0 armel 1.36-7 [62.4 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armel libgcrypt20 armel 1.8.5-3 [484 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armel libssh2-1 armel 1.8.0-2.1 [126 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armel libcurl3-gnutls armel 7.67.0-2 [284 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armel libdeflate0 armel 1.3-3 [69.1 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.2.1-21 [76.7 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.2.1-21 [415 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.2.1-21 [111 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.2.1-21 [645 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armel liblzma5 armel 5.2.4-1+b1 [144 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main armel libhts3 armel 1.10.2-2 [331 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armel liblzma-dev armel 5.2.4-1+b1 [204 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armel zlib1g-dev armel 1:1.2.11.dfsg-1+b1 [204 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armel libhts-dev armel 1.10.2-2 [4783 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armel libtinfo6 armel 6.1+20191019-1 [319 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armel libncurses6 armel 6.1+20191019-1 [81.3 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armel libncursesw6 armel 6.1+20191019-1 [106 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armel libncurses-dev armel 6.1+20191019-1 [297 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armel libncurses5-dev armel 6.1+20191019-1 [940 B] Get:131 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.2.1-21 [1708 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main armel tabix armel 1.10.2-2 [331 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 76.9 MB in 2s (45.9 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15013 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-3) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... 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Selecting previously unselected package librtmp1:armel. Preparing to unpack .../109-librtmp1_2.4+20151223.gitfa8646d.1-2+b1_armel.deb ... Unpacking librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b1) ... Selecting previously unselected package libgpg-error0:armel. Preparing to unpack .../110-libgpg-error0_1.36-7_armel.deb ... Unpacking libgpg-error0:armel (1.36-7) ... Selecting previously unselected package libgcrypt20:armel. Preparing to unpack .../111-libgcrypt20_1.8.5-3_armel.deb ... Unpacking libgcrypt20:armel (1.8.5-3) ... Selecting previously unselected package libssh2-1:armel. Preparing to unpack .../112-libssh2-1_1.8.0-2.1_armel.deb ... Unpacking libssh2-1:armel (1.8.0-2.1) ... Selecting previously unselected package libcurl3-gnutls:armel. Preparing to unpack .../113-libcurl3-gnutls_7.67.0-2_armel.deb ... Unpacking libcurl3-gnutls:armel (7.67.0-2) ... Selecting previously unselected package libdeflate0:armel. Preparing to unpack .../114-libdeflate0_1.3-3_armel.deb ... Unpacking libdeflate0:armel (1.3-3) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../115-libgomp1_9.2.1-21_armel.deb ... Unpacking libgomp1:armel (9.2.1-21) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../116-libstdc++6_9.2.1-21_armel.deb ... Unpacking libstdc++6:armel (9.2.1-21) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../117-libubsan1_9.2.1-21_armel.deb ... Unpacking libubsan1:armel (9.2.1-21) ... Selecting previously unselected package libgcc-9-dev:armel. Preparing to unpack .../118-libgcc-9-dev_9.2.1-21_armel.deb ... Unpacking libgcc-9-dev:armel (9.2.1-21) ... Selecting previously unselected package liblzma5:armel. Preparing to unpack .../119-liblzma5_5.2.4-1+b1_armel.deb ... Unpacking liblzma5:armel (5.2.4-1+b1) ... Selecting previously unselected package libhts3:armel. Preparing to unpack .../120-libhts3_1.10.2-2_armel.deb ... Unpacking libhts3:armel (1.10.2-2) ... Selecting previously unselected package liblzma-dev:armel. Preparing to unpack .../121-liblzma-dev_5.2.4-1+b1_armel.deb ... Unpacking liblzma-dev:armel (5.2.4-1+b1) ... Selecting previously unselected package zlib1g-dev:armel. Preparing to unpack .../122-zlib1g-dev_1%3a1.2.11.dfsg-1+b1_armel.deb ... Unpacking zlib1g-dev:armel (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package libhts-dev:armel. Preparing to unpack .../123-libhts-dev_1.10.2-2_armel.deb ... Unpacking libhts-dev:armel (1.10.2-2) ... Selecting previously unselected package libtinfo6:armel. Preparing to unpack .../124-libtinfo6_6.1+20191019-1_armel.deb ... Unpacking libtinfo6:armel (6.1+20191019-1) ... Selecting previously unselected package libncurses6:armel. Preparing to unpack .../125-libncurses6_6.1+20191019-1_armel.deb ... Unpacking libncurses6:armel (6.1+20191019-1) ... Selecting previously unselected package libncursesw6:armel. Preparing to unpack .../126-libncursesw6_6.1+20191019-1_armel.deb ... Unpacking libncursesw6:armel (6.1+20191019-1) ... Selecting previously unselected package libncurses-dev:armel. Preparing to unpack .../127-libncurses-dev_6.1+20191019-1_armel.deb ... Unpacking libncurses-dev:armel (6.1+20191019-1) ... Selecting previously unselected package libncurses5-dev:armel. Preparing to unpack .../128-libncurses5-dev_6.1+20191019-1_armel.deb ... Unpacking libncurses5-dev:armel (6.1+20191019-1) ... Selecting previously unselected package libstdc++-9-dev:armel. Preparing to unpack .../129-libstdc++-9-dev_9.2.1-21_armel.deb ... Unpacking libstdc++-9-dev:armel (9.2.1-21) ... Selecting previously unselected package pkg-config. Preparing to unpack .../130-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package tabix:armel. Preparing to unpack .../131-tabix_1.10.2-2_armel.deb ... Unpacking tabix:armel (1.10.2-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../132-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000002-1) ... Setting up libpipeline1:amd64 (1.5.1-3) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-arm-linux-gnueabi (2.33.1-6) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.3-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.2) ... Setting up libmagic1:amd64 (1:5.37-6) ... Setting up linux-libc-dev:armel (5.3.15-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up autoconf-archive (20190106-2) ... Setting up file (1:5.37-6) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up linux-libc-dev-armel-cross (5.2.9-2cross7) ... Setting up gcc-9-arm-linux-gnueabi-base:amd64 (9.2.1-21cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up bash-completion (1:2.9-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up cpp-9-arm-linux-gnueabi (9.2.1-21cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up pkg-config (0.29-6) ... Setting up gcc-9-cross-base (9.2.1-21cross1) ... Setting up libc6-armel-cross (2.29-1cross7) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev-armel-cross (2.29-1cross7) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:armel (9.2.1-21) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libgomp1-armel-cross (9.2.1-21cross1) ... Setting up libtool (2.4.6-11) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-armel-cross (9.2.1-21cross1) ... Setting up libgcc1-armel-cross (1:9.2.1-21cross1) ... Setting up libasan5-armel-cross (9.2.1-21cross1) ... Setting up cpp-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libstdc++6-armel-cross (9.2.1-21cross1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libubsan1-armel-cross (9.2.1-21cross1) ... Setting up libgcc-9-dev-armel-cross (9.2.1-21cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-armel-cross (9.2.1-21cross1) ... Setting up gcc-9-arm-linux-gnueabi (9.2.1-21cross1) ... Setting up g++-9-arm-linux-gnueabi (9.2.1-21cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.8) ... Setting up libcrypt1:armel (1:4.4.10-7) ... Setting up dh-autoreconf (19) ... Setting up libcrypt1-dev:armel (1:4.4.10-7) ... Setting up libc6:armel (2.29-6) ... Setting up libnettle7:armel (3.5.1+really3.5.1-2) ... Setting up libtasn1-6:armel (4.15.0-2) ... Setting up libc6-dev:armel (2.29-6) ... Setting up libbz2-1.0:armel (1.0.8-2) ... Setting up libdb5.3:armel (5.3.28+dfsg1-0.6) ... Setting up libtinfo6:armel (6.1+20191019-1) ... Setting up libbz2-dev:armel (1.0.8-2) ... Setting up libkeyutils1:armel (1.6-6) ... Setting up liblzma5:armel (5.2.4-1+b1) ... Setting up libgpg-error0:armel (1.36-7) ... Setting up libgcc1:armel (1:9.2.1-21) ... Setting up libssl1.1:armel (1.1.1d-2) ... Setting up libbrotli1:armel (1.0.7-5+b1) ... Setting up libnghttp2-14:armel (1.40.0-1) ... Setting up libunistring2:armel (0.9.10-2) ... Setting up libdeflate0:armel (1.3-3) ... Setting up libgcrypt20:armel (1.8.5-3) ... Setting up debhelper (12.7.2) ... Setting up zlib1g:armel (1:1.2.11.dfsg-1+b1) ... Setting up libffi6:armel (3.2.1-9) ... Setting up libidn2-0:armel (2.2.0-2) ... Setting up libcom-err2:armel (1.45.4-1) ... Setting up libgomp1:armel (9.2.1-21) ... Setting up libkrb5support0:armel (1.17-6) ... Setting up libsasl2-modules-db:armel (2.1.27+dfsg-2) ... Setting up libasan5:armel (9.2.1-21) ... Setting up libgmp10:armel (2:6.1.2+dfsg-4) ... Setting up libncurses6:armel (6.1+20191019-1) ... Setting up libp11-kit0:armel (0.23.18.1-2) ... Setting up libatomic1:armel (9.2.1-21) ... Setting up libncursesw6:armel (6.1+20191019-1) ... Setting up libk5crypto3:armel (1.17-6) ... Setting up libsasl2-2:armel (2.1.27+dfsg-2) ... Setting up liblzma-dev:armel (5.2.4-1+b1) ... Setting up zlib1g-dev:armel (1:1.2.11.dfsg-1+b1) ... Setting up libssh2-1:armel (1.8.0-2.1) ... Setting up libkrb5-3:armel (1.17-6) ... Setting up libstdc++6:armel (9.2.1-21) ... Setting up libncurses-dev:armel (6.1+20191019-1) ... Setting up libpsl5:armel (0.20.2-2) ... Setting up libhogweed5:armel (3.5.1+really3.5.1-2) ... Setting up libgnutls30:armel (3.6.11.1-2) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libgssapi-krb5-2:armel (1.17-6) ... Setting up libubsan1:armel (9.2.1-21) ... Setting up libncurses5-dev:armel (6.1+20191019-1) ... Setting up libldap-2.4-2:armel (2.4.48+dfsg-1+b2) ... Setting up libcurl3-gnutls:armel (7.67.0-2) ... Setting up libgcc-9-dev:armel (9.2.1-21) ... Setting up tabix:armel (1.10.2-2) ... Setting up libhts3:armel (1.10.2-2) ... Setting up libstdc++-9-dev:armel (9.2.1-21) ... Setting up libhts-dev:armel (1.10.2-2) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.29-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-6 dpkg-dev_1.19.7 g++-8_8.3.0-26 g++-9_9.2.1-21 gcc-8_8.3.0-26 gcc-9_9.2.1-21 libc6-dev_2.29-6 libstdc++-8-dev_8.3.0-26 libstdc++-9-dev_9.2.1-21 libstdc++-9-dev-armel-cross_9.2.1-21cross1 libstdc++6_9.2.1-21 libstdc++6-armel-cross_9.2.1-21cross1 linux-libc-dev_5.3.15-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 autoconf-archive_20190106-2 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 bash-completion_1:2.9-1 binutils_2.33.1-6 binutils-arm-linux-gnueabi_2.33.1-6 binutils-common_2.33.1-6 binutils-x86-64-linux-gnu_2.33.1-6 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-26 cpp-9_9.2.1-21 cpp-9-arm-linux-gnueabi_9.2.1-21cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armel_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.2 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-26 g++-9_9.2.1-21 g++-9-arm-linux-gnueabi_9.2.1-21cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-26 gcc-8-base_8.3.0-26 gcc-9_9.2.1-21 gcc-9-arm-linux-gnueabi_9.2.1-21cross1 gcc-9-arm-linux-gnueabi-base_9.2.1-21cross1 gcc-9-base_9.2.1-21 gcc-9-cross-base_9.2.1-21cross1 gcc-arm-linux-gnueabi_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-21 libasan5-armel-cross_9.2.1-21cross1 libatomic1_9.2.1-21 libatomic1-armel-cross_9.2.1-21cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6 libblkid1_2.34-0.1 libbrotli1_1.0.7-5+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-6 libc-dev-bin_2.29-6 libc6_2.29-6 libc6-armel-cross_2.29-1cross7 libc6-dev_2.29-6 libc6-dev-armel-cross_2.29-1cross7 libcap-ng0_0.7.9-2.1+b1 libcc1-0_9.2.1-21 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt1_1:4.4.10-7 libcrypt1-dev_1:4.4.10-7 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.2 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.3-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-26 libgcc-9-dev_9.2.1-21 libgcc-9-dev-armel-cross_9.2.1-21cross1 libgcc1_1:9.2.1-21 libgcc1-armel-cross_1:9.2.1-21cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-21 libgomp1-armel-cross_9.2.1-21cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-2 libhts3_1.10.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_9.2.1-21 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-4 liblsan0_9.2.1-21 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-26 libncurses-dev_6.1+20191019-1 libncurses5-dev_6.1+20191019-1 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libpsl5_0.20.2-2 libquadmath0_9.2.1-21 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.3.0-26 libstdc++-9-dev_9.2.1-21 libstdc++-9-dev-armel-cross_9.2.1-21cross1 libstdc++6_9.2.1-21 libstdc++6-armel-cross_9.2.1-21cross1 libsub-override-perl_0.09-2 libsystemd0_244-3 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-21 libubsan1_9.2.1-21 libubsan1-armel-cross_9.2.1-21cross1 libuchardet0_0.0.6-3 libudev1_244-3 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-8 libyaml-perl_1.29-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.15-1 linux-libc-dev-armel-cross_5.2.9-2cross7 login_1:4.8-1 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-18 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tabix_1.10.2-2 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: samtools Binary: samtools, samtools-test Architecture: any all Version: 1.10-3 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://www.htslib.org/ Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/samtools Vcs-Git: https://salsa.debian.org/med-team/samtools.git Testsuite: autopkgtest Testsuite-Triggers: tabix Build-Depends: debhelper-compat (= 12), bash-completion, libio-pty-perl , libncurses5-dev, libhts-dev (>= 1.10), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev Package-List: samtools deb science optional arch=any samtools-test deb science optional arch=all Checksums-Sha1: 98b24393629d63f2203f59c108b840b1e046f209 4457760 samtools_1.10.orig.tar.gz d893631788621621c73c9a768ccf425768f4bd71 20216 samtools_1.10-3.debian.tar.xz Checksums-Sha256: 382843e85fdb55868cebaaf2585c43776762d099581341b5803677de5ed117a9 4457760 samtools_1.10.orig.tar.gz 2fd21c4903fbcf68d1992e5e82a03f16c0d67e650a3ff2c6dac2503be23046a4 20216 samtools_1.10-3.debian.tar.xz Files: dc147b46cabbb2c168529e474e947b1d 4457760 samtools_1.10.orig.tar.gz b86d60c5a9398e8b7bab1a8eb216f5e1 20216 samtools_1.10-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl4DlJMACgkQPCZ2P2xn 5uJs9A/+OqexnzvF5QfZNKlCV+cahS2sg9W0+xd1dI30OO8HQ93rd3X3Yg0MkvOP /02DWiEWYlcO/HG35ax9klms0gUrcp3Cv6KOP/VgrrIhgb9iWUrc10RrAGLaJUpN eVkNnGhHRNv/A7LegC5NEibl6kH5woIOIU+b0oaakmJCpRZwrWbzj9HblAi+tK3z iMZJy0+HfJeXh9tCL5CLl0aI2Z22pf0gNqCz1hkm14k19g73P1XoJPqgJLAy3yiU vViZHJWpJhdhi6DHzxWTffCyl2dUYJp8Fp17hiUvXodSeQ36fVbHVPycp1bj54KF g10a+ibbnLQFUlI3oNjvbDgm5AW+Yh6u+p1oC9aC41OmItUMCnfIokIrLNEzgUwK U64USSl9kzV/zHXddngnoiYRKGUhXJ5fcGnh6ACfW1X1u8SKIhrXBZgdXJ/AlCNZ RMzFefhBMrr+78o7sXuAm2WhRPDNid5uN6rjfTOLxogUHysKsCYbKVTZPOlk0oK8 EHRA2aojBgNMBLYLOu3BJunX06CPg0uE4FDz1O5nXz+32g9Q3t3MdhZLwknM2yWL f35joUtQgB/pWVHQhd/GLiyZo2b4D75MUmkNwKSnNogVW1+l/4h2HMLsR3Cn3O6l vZYqcMt8Ac9sEQ7I3WoXEoQW8oB035XJLkCgR7A+fP1w1HNonMU= =5f+U -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 25 16:55:47 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./samtools_1.10-3.dsc dpkg-source: info: extracting samtools in /<> dpkg-source: info: unpacking samtools_1.10.orig.tar.gz dpkg-source: info: unpacking samtools_1.10-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-337ac70b-0829-4ae1-b5d4-dc0085bcd47a SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package samtools dpkg-buildpackage: info: source version 1.10-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel dpkg-source: info: using options from samtools-1.10/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f config.mk touch config.mk dh_auto_clean -- make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libbam.a libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview rm -f config.cache config.h config.log config.mk config.status rm -f TAGS rm -rf autom4te.cache make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/samtools.substvars debian/samtools-test.substvars debian/files rm -fr -- debian/samtools/ debian/tmp/ debian/samtools-test/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' touch config.mk aclocal --force -I debian/ -I /usr/share/aclocal configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level autoconf configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level dh_auto_configure -- --with-htslib=system ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --with-htslib=system configure: loading site script /etc/dpkg-cross/cross-config.armel checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to accept ISO C89... none needed checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for htslib/sam.h... yes checking for hts_version in -lhts... yes checking for Curses library... yes checking for working curses.h... yes checking for X/Open Enhanced Curses conformance... no checking for Curses color functions... yes checking for obsolete Curses functions... yes checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating config.h make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="\$(DFLAGS) \$(INCLUDES) $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" make -j1 "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=\$(DFLAGS) \$(INCLUDES) -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_index.o bam_index.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plcmd.o bam_plcmd.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_view.o sam_view.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_fastq.o bam_fastq.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_cat.o bam_cat.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_md.o bam_md.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_reheader.o bam_reheader.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_sort.o bam_sort.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedidx.o bedidx.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdup.o bam_rmdup.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdupse.o bam_rmdupse.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_mate.o bam_mate.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_stat.o bam_stat.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_color.o bam_color.c echo '#define SAMTOOLS_VERSION "1.10"' > version.h arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamtk.o bamtk.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf.o bam2bcf.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf_indel.o bam2bcf_indel.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample.o sample.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cut_target.o cut_target.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o phase.o phase.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2depth.o bam2depth.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o coverage.o coverage.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o padding.o padding.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedcov.o bedcov.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamshuf.o bamshuf.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dict.o dict.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats.o stats.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats_isize.o stats_isize.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_flags.o bam_flags.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_split.o bam_split.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview.o bam_tview.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_curses.o bam_tview_curses.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_html.o bam_tview_html.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_lpileup.o bam_lpileup.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_quickcheck.o bam_quickcheck.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_addrprg.o bam_addrprg.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_markdup.o bam_markdup.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp_file.o tmp_file.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lz4/lz4.o lz4/lz4.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_aux.o bam_aux.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam.o bam.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plbuf.o bam_plbuf.c ar -csru libbam.a bam_aux.o bam.o sam.o bam_plbuf.o ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_opts.o sam_opts.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_utils.o sam_utils.c ar -rcs libst.a sam_opts.o sam_utils.o arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o samtools bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_reheader.o bam_sort.o bedidx.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o bam2bcf_indel.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o ./lz4/lz4.o libbam.a libst.a -lhts -lcurses -lm -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/ace2sam.o misc/ace2sam.c arm-linux-gnueabi-gcc -Wl,-z,relro -Wl,-z,now -o misc/ace2sam misc/ace2sam.o -lz arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DMAQ_LONGREADS -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-long.o misc/maq2sam.c arm-linux-gnueabi-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-long misc/maq2sam-long.o -lz arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/maq2sam-short.o misc/maq2sam.c arm-linux-gnueabi-gcc -Wl,-z,relro -Wl,-z,now -o misc/maq2sam-short misc/maq2sam-short.o -lz arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5fa.o misc/md5fa.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5fa misc/md5fa.o -lhts -lz arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/md5sum-lite.o misc/md5sum-lite.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc/wgsim.o misc/wgsim.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o misc/wgsim misc/wgsim.o -lm -lhts -lz arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test.o test/test.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_count_rg.o test/split/test_count_rg.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/split/test_parse_args.o test/split/test_parse_args.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz -lpthread arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/vcf-miniview.o test/vcf-miniview.c arm-linux-gnueabi-gcc -L./lz4 -Wl,-z,relro -Wl,-z,now -o test/vcf-miniview test/vcf-miniview.o -lhts -lz -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/samtools.substvars rm -fr -- debian/.debhelper/generated/samtools/ debian/samtools/ debian/tmp/ rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- \ prefix=/usr install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/share/man/man1 install -p samtools /<>/debian/tmp/usr/bin install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /<>/debian/tmp/usr/bin install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /<>/debian/tmp/usr/bin install -p -m 644 doc/samtools*.1 misc/wgsim.1 /<>/debian/tmp/usr/share/man/man1 make[2]: Leaving directory '/<>' make clean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libbam.a libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install install -d debian/samtools//usr cp --reflink=auto -a debian/tmp/usr/bin debian/samtools//usr/ install -d debian/samtools//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/samtools//usr/share/man/ install -d debian/samtools/usr/share/commonwl/ cp --reflink=auto -a ./debian/samtools-faidx.cwl ./debian/samtools-index.cwl ./debian/samtools-rmdup.cwl ./debian/samtools-sort.cwl ./debian/samtools-view.cwl debian/samtools/usr/share/commonwl// cp --reflink=auto -a ./debian/mans/ace2sam.1 ./debian/mans/samtools.pl.1 ./debian/mans/wgsim.1 debian/samtools/usr/share/man/man1/ install -d debian/.debhelper/generated/samtools install -d debian/.debhelper/generated/samtools-test # Fix Perl interpreter PATH for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \ sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' ${pscript} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a install -d debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./AUTHORS debian/samtools/usr/share/doc/samtools cp --reflink=auto -a ./README debian/samtools/usr/share/doc/samtools chown -R 0:0 debian/samtools/usr/share/doc chmod -R u\+rw,go=rX debian/samtools/usr/share/doc install -p -m0644 debian/README.Debian debian/samtools/usr/share/doc/samtools/README.Debian install -p -m0644 debian/copyright debian/samtools/usr/share/doc/samtools/copyright rm -f debian/samtools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/samtools/usr/share/doc/samtools/changelog.Debian install -p -m0644 debian/NEWS debian/samtools/usr/share/doc/samtools/NEWS.Debian install -p -m0644 NEWS debian/samtools/usr/share/doc/samtools/changelog make[1]: Leaving directory '/<>' dh_installexamples -a install -d debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/00README.txt debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/ex1.sam.gz debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.fa debian/samtools/usr/share/doc/samtools/examples cp --reflink=auto -a ./examples/toy.sam debian/samtools/usr/share/doc/samtools/examples dh_installman -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 mv debian/samtools/usr/share/man/man1/ace2sam.1.dh-new debian/samtools/usr/share/man/man1/ace2sam.1 mv debian/samtools/usr/share/man/man1/samtools-addreplacerg.1.dh-new debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 mv debian/samtools/usr/share/man/man1/samtools-bedcov.1.dh-new debian/samtools/usr/share/man/man1/samtools-bedcov.1 mv debian/samtools/usr/share/man/man1/samtools-calmd.1.dh-new debian/samtools/usr/share/man/man1/samtools-calmd.1 mv debian/samtools/usr/share/man/man1/samtools-cat.1.dh-new debian/samtools/usr/share/man/man1/samtools-cat.1 mv debian/samtools/usr/share/man/man1/samtools-collate.1.dh-new debian/samtools/usr/share/man/man1/samtools-collate.1 mv debian/samtools/usr/share/man/man1/samtools-depad.1.dh-new debian/samtools/usr/share/man/man1/samtools-depad.1 mv debian/samtools/usr/share/man/man1/samtools-depth.1.dh-new debian/samtools/usr/share/man/man1/samtools-depth.1 mv debian/samtools/usr/share/man/man1/samtools-dict.1.dh-new debian/samtools/usr/share/man/man1/samtools-dict.1 mv debian/samtools/usr/share/man/man1/samtools-faidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-faidx.1 mv debian/samtools/usr/share/man/man1/samtools-fasta.1.dh-new debian/samtools/usr/share/man/man1/samtools-fasta.1 mv debian/samtools/usr/share/man/man1/samtools-fixmate.1.dh-new debian/samtools/usr/share/man/man1/samtools-fixmate.1 mv debian/samtools/usr/share/man/man1/samtools-flags.1.dh-new debian/samtools/usr/share/man/man1/samtools-flags.1 mv debian/samtools/usr/share/man/man1/samtools-flagstat.1.dh-new debian/samtools/usr/share/man/man1/samtools-flagstat.1 mv debian/samtools/usr/share/man/man1/samtools-fqidx.1.dh-new debian/samtools/usr/share/man/man1/samtools-fqidx.1 mv debian/samtools/usr/share/man/man1/samtools-idxstats.1.dh-new debian/samtools/usr/share/man/man1/samtools-idxstats.1 mv debian/samtools/usr/share/man/man1/samtools-index.1.dh-new debian/samtools/usr/share/man/man1/samtools-index.1 mv debian/samtools/usr/share/man/man1/samtools-markdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-markdup.1 mv debian/samtools/usr/share/man/man1/samtools-merge.1.dh-new debian/samtools/usr/share/man/man1/samtools-merge.1 mv debian/samtools/usr/share/man/man1/samtools-mpileup.1.dh-new debian/samtools/usr/share/man/man1/samtools-mpileup.1 mv debian/samtools/usr/share/man/man1/samtools-phase.1.dh-new debian/samtools/usr/share/man/man1/samtools-phase.1 mv debian/samtools/usr/share/man/man1/samtools-quickcheck.1.dh-new debian/samtools/usr/share/man/man1/samtools-quickcheck.1 mv debian/samtools/usr/share/man/man1/samtools-reheader.1.dh-new debian/samtools/usr/share/man/man1/samtools-reheader.1 mv debian/samtools/usr/share/man/man1/samtools-rmdup.1.dh-new debian/samtools/usr/share/man/man1/samtools-rmdup.1 mv debian/samtools/usr/share/man/man1/samtools-sort.1.dh-new debian/samtools/usr/share/man/man1/samtools-sort.1 mv debian/samtools/usr/share/man/man1/samtools-split.1.dh-new debian/samtools/usr/share/man/man1/samtools-split.1 mv debian/samtools/usr/share/man/man1/samtools-stats.1.dh-new debian/samtools/usr/share/man/man1/samtools-stats.1 mv debian/samtools/usr/share/man/man1/samtools-targetcut.1.dh-new debian/samtools/usr/share/man/man1/samtools-targetcut.1 mv debian/samtools/usr/share/man/man1/samtools-tview.1.dh-new debian/samtools/usr/share/man/man1/samtools-tview.1 mv debian/samtools/usr/share/man/man1/samtools-view.1.dh-new debian/samtools/usr/share/man/man1/samtools-view.1 mv debian/samtools/usr/share/man/man1/samtools.1.dh-new debian/samtools/usr/share/man/man1/samtools.1 mv debian/samtools/usr/share/man/man1/samtools.pl.1.dh-new debian/samtools/usr/share/man/man1/samtools.pl.1 mv debian/samtools/usr/share/man/man1/wgsim.1.dh-new debian/samtools/usr/share/man/man1/wgsim.1 chmod 0644 -- debian/samtools/usr/share/man/man1/ace2sam.1 debian/samtools/usr/share/man/man1/samtools-addreplacerg.1 debian/samtools/usr/share/man/man1/samtools-bedcov.1 debian/samtools/usr/share/man/man1/samtools-calmd.1 debian/samtools/usr/share/man/man1/samtools-cat.1 debian/samtools/usr/share/man/man1/samtools-collate.1 debian/samtools/usr/share/man/man1/samtools-depad.1 debian/samtools/usr/share/man/man1/samtools-depth.1 debian/samtools/usr/share/man/man1/samtools-dict.1 debian/samtools/usr/share/man/man1/samtools-faidx.1 debian/samtools/usr/share/man/man1/samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fixmate.1 debian/samtools/usr/share/man/man1/samtools-flags.1 debian/samtools/usr/share/man/man1/samtools-flagstat.1 debian/samtools/usr/share/man/man1/samtools-fqidx.1 debian/samtools/usr/share/man/man1/samtools-idxstats.1 debian/samtools/usr/share/man/man1/samtools-index.1 debian/samtools/usr/share/man/man1/samtools-markdup.1 debian/samtools/usr/share/man/man1/samtools-merge.1 debian/samtools/usr/share/man/man1/samtools-mpileup.1 debian/samtools/usr/share/man/man1/samtools-phase.1 debian/samtools/usr/share/man/man1/samtools-quickcheck.1 debian/samtools/usr/share/man/man1/samtools-reheader.1 debian/samtools/usr/share/man/man1/samtools-rmdup.1 debian/samtools/usr/share/man/man1/samtools-sort.1 debian/samtools/usr/share/man/man1/samtools-split.1 debian/samtools/usr/share/man/man1/samtools-stats.1 debian/samtools/usr/share/man/man1/samtools-targetcut.1 debian/samtools/usr/share/man/man1/samtools-tview.1 debian/samtools/usr/share/man/man1/samtools-view.1 debian/samtools/usr/share/man/man1/samtools.1 debian/samtools/usr/share/man/man1/samtools.pl.1 debian/samtools/usr/share/man/man1/wgsim.1 dh_lintian -a install -d debian/samtools/usr/share/lintian/overrides install -p -m0644 debian/samtools.lintian-overrides debian/samtools/usr/share/lintian/overrides/samtools dh_perl -a (grep -a -s -v perl:Depends debian/samtools.substvars; echo perl:Depends=perl:any) > debian/samtools.substvars.new mv debian/samtools.substvars.new debian/samtools.substvars dh_link -a rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 ln -s samtools-fasta.1 debian/samtools/usr/share/man/man1/samtools-fastq.1 dh_strip_nondeterminism -a Using 1577290523 as canonical time Normalizing debian/samtools/usr/share/doc/samtools/examples/ex1.sam.gz using File::StripNondeterminism::handlers::gzip dh_compress -a cd debian/samtools chmod a-x usr/share/doc/samtools/NEWS.Debian usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 gzip -9nf usr/share/doc/samtools/NEWS.Debian usr/share/doc/samtools/changelog usr/share/doc/samtools/changelog.Debian usr/share/man/man1/ace2sam.1 usr/share/man/man1/samtools-addreplacerg.1 usr/share/man/man1/samtools-bedcov.1 usr/share/man/man1/samtools-calmd.1 usr/share/man/man1/samtools-cat.1 usr/share/man/man1/samtools-collate.1 usr/share/man/man1/samtools-depad.1 usr/share/man/man1/samtools-depth.1 usr/share/man/man1/samtools-dict.1 usr/share/man/man1/samtools-faidx.1 usr/share/man/man1/samtools-fasta.1 usr/share/man/man1/samtools-fixmate.1 usr/share/man/man1/samtools-flags.1 usr/share/man/man1/samtools-flagstat.1 usr/share/man/man1/samtools-fqidx.1 usr/share/man/man1/samtools-idxstats.1 usr/share/man/man1/samtools-index.1 usr/share/man/man1/samtools-markdup.1 usr/share/man/man1/samtools-merge.1 usr/share/man/man1/samtools-mpileup.1 usr/share/man/man1/samtools-phase.1 usr/share/man/man1/samtools-quickcheck.1 usr/share/man/man1/samtools-reheader.1 usr/share/man/man1/samtools-rmdup.1 usr/share/man/man1/samtools-sort.1 usr/share/man/man1/samtools-split.1 usr/share/man/man1/samtools-stats.1 usr/share/man/man1/samtools-targetcut.1 usr/share/man/man1/samtools-tview.1 usr/share/man/man1/samtools-view.1 usr/share/man/man1/samtools.1 usr/share/man/man1/samtools.pl.1 usr/share/man/man1/wgsim.1 cd '/<>' rm -f debian/samtools/usr/share/man/man1/samtools-fastq.1 debian/samtools/usr/share/man/man1/samtools-fastq.1.gz ln -s samtools-fasta.1.gz debian/samtools/usr/share/man/man1/samtools-fastq.1.gz dh_fixperms -a find debian/samtools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/samtools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/samtools/usr/share/doc -type f -a -true -a ! -regex 'debian/samtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/samtools/usr/share/man debian/samtools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/samtools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a install -d debian/samtools/usr/lib/debug/.dwz/arm-linux-gnueabi dwz -mdebian/samtools/usr/lib/debug/.dwz/arm-linux-gnueabi/samtools.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabi/samtools.debug -- debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/samtools debian/samtools/usr/bin/wgsim dwz: debian/samtools/usr/bin/samtools: DWARF compression not beneficial - old size 568294 new size 587600 arm-linux-gnueabi-objcopy --compress-debug-sections debian/samtools/usr/lib/debug/.dwz/arm-linux-gnueabi/samtools.debug dh_strip -a install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/90 arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/wgsim debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/90/28b659a8198a25de6f294460147a812844d7a1.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/90/28b659a8198a25de6f294460147a812844d7a1.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/90/28b659a8198a25de6f294460147a812844d7a1.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/wgsim arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/90/28b659a8198a25de6f294460147a812844d7a1.debug debian/samtools/usr/bin/wgsim install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8b arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5sum-lite debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8b/2bb616d09e3b57cdb8f000e960891401ea16a2.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8b/2bb616d09e3b57cdb8f000e960891401ea16a2.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8b/2bb616d09e3b57cdb8f000e960891401ea16a2.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5sum-lite arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/8b/2bb616d09e3b57cdb8f000e960891401ea16a2.debug debian/samtools/usr/bin/md5sum-lite install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/ec arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/md5fa debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/ec/ce9caa5434ec1ee48dfc3f5b212b85e26e19b3.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/ec/ce9caa5434ec1ee48dfc3f5b212b85e26e19b3.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/ec/ce9caa5434ec1ee48dfc3f5b212b85e26e19b3.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/md5fa arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/ec/ce9caa5434ec1ee48dfc3f5b212b85e26e19b3.debug debian/samtools/usr/bin/md5fa install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/49 arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-short debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/49/b0652fee01ad47a6c2cbb90be0d8a479de713d.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/49/b0652fee01ad47a6c2cbb90be0d8a479de713d.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/49/b0652fee01ad47a6c2cbb90be0d8a479de713d.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-short arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/49/b0652fee01ad47a6c2cbb90be0d8a479de713d.debug debian/samtools/usr/bin/maq2sam-short install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/eb arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/maq2sam-long debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/eb/12ebfc1fcedf2e96a217bc9975fb2fc66e3f89.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/eb/12ebfc1fcedf2e96a217bc9975fb2fc66e3f89.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/eb/12ebfc1fcedf2e96a217bc9975fb2fc66e3f89.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/maq2sam-long arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/eb/12ebfc1fcedf2e96a217bc9975fb2fc66e3f89.debug debian/samtools/usr/bin/maq2sam-long install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/c5 arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/ace2sam debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/c5/f0951131c2caff5d2f143f9f6825b8a3eb9357.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/c5/f0951131c2caff5d2f143f9f6825b8a3eb9357.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/c5/f0951131c2caff5d2f143f9f6825b8a3eb9357.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/ace2sam arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/c5/f0951131c2caff5d2f143f9f6825b8a3eb9357.debug debian/samtools/usr/bin/ace2sam install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e5 arm-linux-gnueabi-objcopy --only-keep-debug --compress-debug-sections debian/samtools/usr/bin/samtools debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e5/da970941d5af2d6ac0e0bef1315770396abbb2.debug chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e5/da970941d5af2d6ac0e0bef1315770396abbb2.debug chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e5/da970941d5af2d6ac0e0bef1315770396abbb2.debug arm-linux-gnueabi-strip --remove-section=.comment --remove-section=.note debian/samtools/usr/bin/samtools arm-linux-gnueabi-objcopy --add-gnu-debuglink debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.build-id/e5/da970941d5af2d6ac0e0bef1315770396abbb2.debug debian/samtools/usr/bin/samtools install -d debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/samtools/usr/lib/debug/.dwz/arm-linux-gnueabi debian/.debhelper/samtools/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/samtools/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/samtools/usr/lib/debug install -d debian/.debhelper/samtools/dbgsym-root/usr/share/doc ln -s samtools debian/.debhelper/samtools/dbgsym-root/usr/share/doc/samtools-dbgsym dh_makeshlibs -a rm -f debian/samtools/DEBIAN/shlibs dh_shlibdeps -a install -d debian/samtools/DEBIAN dpkg-shlibdeps -Tdebian/samtools.substvars debian/samtools/usr/bin/samtools debian/samtools/usr/bin/ace2sam debian/samtools/usr/bin/maq2sam-long debian/samtools/usr/bin/maq2sam-short debian/samtools/usr/bin/md5fa debian/samtools/usr/bin/md5sum-lite debian/samtools/usr/bin/wgsim dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/samtools.substvars echo misc:Pre-Depends= >> debian/samtools.substvars install -d debian/.debhelper/samtools/dbgsym-root/DEBIAN dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/.debhelper/samtools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=samtools-dbgsym "-DDepends=samtools (= \${binary:Version})" "-DDescription=debug symbols for samtools" "-DBuild-Ids=49b0652fee01ad47a6c2cbb90be0d8a479de713d 8b2bb616d09e3b57cdb8f000e960891401ea16a2 9028b659a8198a25de6f294460147a812844d7a1 c5f0951131c2caff5d2f143f9f6825b8a3eb9357 e5da970941d5af2d6ac0e0bef1315770396abbb2 eb12ebfc1fcedf2e96a217bc9975fb2fc66e3f89 ecce9caa5434ec1ee48dfc3f5b212b85e26e19b3" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/control dpkg-gencontrol -psamtools -ldebian/changelog -Tdebian/samtools.substvars -Pdebian/samtools -UMulti-Arch dpkg-gencontrol: warning: package samtools: substitution variable ${perl:Depends} unused, but is defined chmod 0644 -- debian/samtools/DEBIAN/control chown 0:0 -- debian/samtools/DEBIAN/control dh_md5sums -a cd debian/samtools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/samtools/DEBIAN/md5sums chown 0:0 -- debian/samtools/DEBIAN/md5sums cd debian/.debhelper/samtools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/samtools/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/samtools .. dpkg-deb: building package 'samtools' in '../samtools_1.10-3_armel.deb'. dpkg-deb --build debian/.debhelper/samtools/dbgsym-root .. dpkg-deb: building package 'samtools-dbgsym' in '../samtools-dbgsym_1.10-3_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../samtools_1.10-3_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from samtools-1.10/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-12-27T21:24:51Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ samtools_1.10-3_armel.changes: ------------------------------ Format: 1.8 Date: Wed, 25 Dec 2019 17:15:23 +0100 Source: samtools Binary: samtools samtools-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.10-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: samtools - processing sequence alignments in SAM, BAM and CRAM formats Changes: samtools (1.10-3) unstable; urgency=medium . * Team upload. * Allow tests to fail on mipsel due to lack of memory Checksums-Sha1: 150ef6c27b4bdb100bf17df25e56cc92688ab481 754104 samtools-dbgsym_1.10-3_armel.deb 379b2d8ba3423ae8583238beb7057ea9cae01686 5746 samtools_1.10-3_armel.buildinfo ad533378ab883d8e85bfd2e6e952c8ed1d685684 489548 samtools_1.10-3_armel.deb Checksums-Sha256: 5a2eeacb67523c6deb7c543c297547a0367438fe31b2347fdea3dc2ae2c098a1 754104 samtools-dbgsym_1.10-3_armel.deb e34f54f5ec2b56706fa192942afde5173cd05a9a213e45e13a1937c4d38136dc 5746 samtools_1.10-3_armel.buildinfo 6fc72896ed7caf2a2608b6c66d24b6579e23528fc6b7b188f9b890743018c274 489548 samtools_1.10-3_armel.deb Files: d2d3fcd21eaf748674763707c3a2278b 754104 debug optional samtools-dbgsym_1.10-3_armel.deb 9e62db5da345e2287d51d4bb8700df19 5746 science optional samtools_1.10-3_armel.buildinfo 31a181fb37d02004d4ebeeb3adc4753f 489548 science optional samtools_1.10-3_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: samtools Binary: samtools samtools-test Architecture: armel Version: 1.10-3 Checksums-Md5: d2d3fcd21eaf748674763707c3a2278b 754104 samtools-dbgsym_1.10-3_armel.deb 31a181fb37d02004d4ebeeb3adc4753f 489548 samtools_1.10-3_armel.deb Checksums-Sha1: 150ef6c27b4bdb100bf17df25e56cc92688ab481 754104 samtools-dbgsym_1.10-3_armel.deb ad533378ab883d8e85bfd2e6e952c8ed1d685684 489548 samtools_1.10-3_armel.deb Checksums-Sha256: 5a2eeacb67523c6deb7c543c297547a0367438fe31b2347fdea3dc2ae2c098a1 754104 samtools-dbgsym_1.10-3_armel.deb 6fc72896ed7caf2a2608b6c66d24b6579e23528fc6b7b188f9b890743018c274 489548 samtools_1.10-3_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 27 Dec 2019 21:24:51 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), autoconf-archive (= 20190106-2), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-5), bash-completion (= 1:2.9-1), binutils (= 2.33.1-6), binutils-common (= 2.33.1-6), binutils-x86-64-linux-gnu (= 2.33.1-6), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-26), cpp-9 (= 9.2.1-21), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.7.2), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.37-6), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-21), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-26), gcc-8-base (= 8.3.0-26), gcc-9 (= 9.2.1-21), gcc-9-base (= 9.2.1-21), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.3-1), groff-base (= 1.22.4-4), gzip (= 1.9-3+b1), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-21), libatomic1 (= 9.2.1-21), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.33.1-6), libblkid1 (= 2.34-0.1), libbrotli1 (= 1.0.7-5+b1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libbz2-dev (= 1.0.8-2), libc-bin (= 2.29-6), libc-dev-bin (= 2.29-6), libc6 (= 2.29-6), libc6-dev (= 2.29-6), libcap-ng0 (= 0.7.9-2.1+b1), libcc1-0 (= 9.2.1-21), libcom-err2 (= 1.45.4-1), libcroco3 (= 0.6.13-1), libcrypt1 (= 1:4.4.10-7), libcrypt1-dev (= 1:4.4.10-7), libcurl3-gnutls (= 7.67.0-2), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.250), libdebhelper-perl (= 12.7.2), libdeflate0 (= 1.3-3), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.3-1), libgcc-8-dev (= 8.3.0-26), libgcc-9-dev (= 9.2.1-21), libgcc1 (= 1:9.2.1-21), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.3-2), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.11.1-2), libgomp1 (= 9.2.1-21), libgpg-error0 (= 1.36-7), libgssapi-krb5-2 (= 1.17-6), libhogweed5 (= 3.5.1+really3.5.1-2), libhts-dev (= 1.10.2-2), libhts3 (= 1.10.2-2), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-2), libisl22 (= 0.22-2), libitm1 (= 9.2.1-21), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.48+dfsg-1+b2), libldap-common (= 2.4.48+dfsg-1), liblsan0 (= 9.2.1-21), liblz4-1 (= 1.9.2-2), liblzma-dev (= 5.2.4-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-6), libmagic1 (= 1:5.37-6), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-26), libncurses-dev (= 6.1+20191019-1), libncurses5-dev (= 6.1+20191019-1), libncurses6 (= 6.1+20191019-1), libncursesw6 (= 6.1+20191019-1), libnettle7 (= 3.5.1+really3.5.1-2), libnghttp2-14 (= 1.40.0-1), libp11-kit0 (= 0.23.18.1-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.1-3), libpsl5 (= 0.20.2-2), libquadmath0 (= 9.2.1-21), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b1), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1d-2), libstdc++-9-dev (= 9.2.1-21), libstdc++6 (= 9.2.1-21), libsub-override-perl (= 0.09-2), libsystemd0 (= 244-3), libtasn1-6 (= 4.15.0-2), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-21), libubsan1 (= 9.2.1-21), libuchardet0 (= 0.0.6-3), libudev1 (= 244-3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-8), linux-libc-dev (= 5.3.15-1), login (= 1:4.8-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-2), mawk (= 1.3.3-18), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), pkg-config (= 0.29-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-1), tabix (= 1.10.2-2), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1577290523" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ samtools-dbgsym_1.10-3_armel.deb -------------------------------- new Debian package, version 2.0. size 754104 bytes: control archive=900 bytes. 618 bytes, 12 lines control 828 bytes, 8 lines md5sums Package: samtools-dbgsym Source: samtools Version: 1.10-3 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 826 Depends: samtools (= 1.10-3) Section: debug Priority: optional Description: debug symbols for samtools Build-Ids: 49b0652fee01ad47a6c2cbb90be0d8a479de713d 8b2bb616d09e3b57cdb8f000e960891401ea16a2 9028b659a8198a25de6f294460147a812844d7a1 c5f0951131c2caff5d2f143f9f6825b8a3eb9357 e5da970941d5af2d6ac0e0bef1315770396abbb2 eb12ebfc1fcedf2e96a217bc9975fb2fc66e3f89 ecce9caa5434ec1ee48dfc3f5b212b85e26e19b3 drwxr-xr-x root/root 0 2019-12-25 16:15 ./ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.build-id/49/ -rw-r--r-- root/root 11220 2019-12-25 16:15 ./usr/lib/debug/.build-id/49/b0652fee01ad47a6c2cbb90be0d8a479de713d.debug drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.build-id/8b/ -rw-r--r-- root/root 7420 2019-12-25 16:15 ./usr/lib/debug/.build-id/8b/2bb616d09e3b57cdb8f000e960891401ea16a2.debug drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.build-id/90/ -rw-r--r-- root/root 22400 2019-12-25 16:15 ./usr/lib/debug/.build-id/90/28b659a8198a25de6f294460147a812844d7a1.debug drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.build-id/c5/ -rw-r--r-- root/root 24900 2019-12-25 16:15 ./usr/lib/debug/.build-id/c5/f0951131c2caff5d2f143f9f6825b8a3eb9357.debug drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.build-id/e5/ -rw-r--r-- root/root 733752 2019-12-25 16:15 ./usr/lib/debug/.build-id/e5/da970941d5af2d6ac0e0bef1315770396abbb2.debug drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.build-id/eb/ -rw-r--r-- root/root 11216 2019-12-25 16:15 ./usr/lib/debug/.build-id/eb/12ebfc1fcedf2e96a217bc9975fb2fc66e3f89.debug drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.build-id/ec/ -rw-r--r-- root/root 10140 2019-12-25 16:15 ./usr/lib/debug/.build-id/ec/ce9caa5434ec1ee48dfc3f5b212b85e26e19b3.debug drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/lib/debug/.dwz/arm-linux-gnueabi/ -rw-r--r-- root/root 3472 2019-12-25 16:15 ./usr/lib/debug/.dwz/arm-linux-gnueabi/samtools.debug drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-12-25 16:15 ./usr/share/doc/samtools-dbgsym -> samtools samtools_1.10-3_armel.deb ------------------------- new Debian package, version 2.0. size 489548 bytes: control archive=2688 bytes. 902 bytes, 18 lines control 4792 bytes, 71 lines md5sums Package: samtools Version: 1.10-3 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1063 Depends: libc6 (>= 2.29), libhts3 (>= 1.10), libncurses6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.2.3.3) Recommends: python3, cwltool Breaks: bio-tradis (<= 1.4.5+dfsg-1), iva (<= 1.0.9+ds-6) Section: science Priority: optional Homepage: http://www.htslib.org/ Description: processing sequence alignments in SAM, BAM and CRAM formats Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server. drwxr-xr-x root/root 0 2019-12-25 16:15 ./ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/bin/ -rwxr-xr-x root/root 17952 2019-12-25 16:15 ./usr/bin/ace2sam -rwxr-xr-x root/root 5437 2019-12-25 16:15 ./usr/bin/blast2sam.pl -rwxr-xr-x root/root 3360 2019-12-25 16:15 ./usr/bin/bowtie2sam.pl -rwxr-xr-x root/root 17996 2019-12-25 16:15 ./usr/bin/export2sam.pl -rwxr-xr-x root/root 6121 2019-12-25 16:15 ./usr/bin/interpolate_sam.pl -rwxr-xr-x root/root 9760 2019-12-25 16:15 ./usr/bin/maq2sam-long -rwxr-xr-x root/root 9760 2019-12-25 16:15 ./usr/bin/maq2sam-short -rwxr-xr-x root/root 9760 2019-12-25 16:15 ./usr/bin/md5fa -rwxr-xr-x root/root 5664 2019-12-25 16:15 ./usr/bin/md5sum-lite -rwxr-xr-x root/root 7969 2019-12-25 16:15 ./usr/bin/novo2sam.pl -rwxr-xr-x root/root 50473 2019-12-25 16:15 ./usr/bin/plot-bamstats -rwxr-xr-x root/root 3204 2019-12-25 16:15 ./usr/bin/psl2sam.pl -rwxr-xr-x root/root 8957 2019-12-25 16:15 ./usr/bin/sam2vcf.pl -rwxr-xr-x root/root 562808 2019-12-25 16:15 ./usr/bin/samtools -rwxr-xr-x root/root 16474 2019-12-25 16:15 ./usr/bin/samtools.pl -rwxr-xr-x root/root 11101 2019-12-25 16:15 ./usr/bin/seq_cache_populate.pl -rwxr-xr-x root/root 3905 2019-12-25 16:15 ./usr/bin/soap2sam.pl -rwxr-xr-x root/root 22088 2019-12-25 16:15 ./usr/bin/wgsim -rwxr-xr-x root/root 12536 2019-12-25 16:15 ./usr/bin/wgsim_eval.pl -rwxr-xr-x root/root 3579 2019-12-25 16:15 ./usr/bin/zoom2sam.pl drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/commonwl/ -rwxr-xr-x root/root 1906 2019-12-11 10:52 ./usr/share/commonwl/samtools-faidx.cwl -rwxr-xr-x root/root 1979 2019-12-11 10:52 ./usr/share/commonwl/samtools-index.cwl -rwxr-xr-x root/root 1627 2019-12-11 10:52 ./usr/share/commonwl/samtools-rmdup.cwl -rwxr-xr-x root/root 2834 2019-12-11 10:52 ./usr/share/commonwl/samtools-sort.cwl -rwxr-xr-x root/root 6224 2019-12-11 10:52 ./usr/share/commonwl/samtools-view.cwl drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/doc/samtools/ -rw-r--r-- root/root 828 2019-12-06 16:40 ./usr/share/doc/samtools/AUTHORS -rw-r--r-- root/root 369 2019-12-11 10:52 ./usr/share/doc/samtools/NEWS.Debian.gz -rw-r--r-- root/root 4030 2019-12-06 16:40 ./usr/share/doc/samtools/README -rw-r--r-- root/root 497 2019-12-11 10:52 ./usr/share/doc/samtools/README.Debian -rw-r--r-- root/root 5432 2019-12-25 16:15 ./usr/share/doc/samtools/changelog.Debian.gz -rw-r--r-- root/root 21669 2019-12-06 16:40 ./usr/share/doc/samtools/changelog.gz -rw-r--r-- root/root 2250 2019-12-11 10:55 ./usr/share/doc/samtools/copyright drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/doc/samtools/examples/ -rw-r--r-- root/root 1315 2019-12-06 16:40 ./usr/share/doc/samtools/examples/00README.txt -rw-r--r-- root/root 3225 2019-12-06 16:40 ./usr/share/doc/samtools/examples/ex1.fa -rw-r--r-- root/root 114565 2019-12-25 16:15 ./usr/share/doc/samtools/examples/ex1.sam.gz -rw-r--r-- root/root 98 2019-12-06 16:40 ./usr/share/doc/samtools/examples/toy.fa -rw-r--r-- root/root 786 2019-12-06 16:40 ./usr/share/doc/samtools/examples/toy.sam drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/lintian/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 220 2019-12-11 10:52 ./usr/share/lintian/overrides/samtools drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/man/ drwxr-xr-x root/root 0 2019-12-25 16:15 ./usr/share/man/man1/ -rw-r--r-- root/root 462 2019-12-25 16:15 ./usr/share/man/man1/ace2sam.1.gz -rw-r--r-- root/root 1498 2019-12-25 16:15 ./usr/share/man/man1/samtools-addreplacerg.1.gz -rw-r--r-- root/root 1451 2019-12-25 16:15 ./usr/share/man/man1/samtools-bedcov.1.gz -rw-r--r-- root/root 1797 2019-12-25 16:15 ./usr/share/man/man1/samtools-calmd.1.gz -rw-r--r-- root/root 1485 2019-12-25 16:15 ./usr/share/man/man1/samtools-cat.1.gz -rw-r--r-- root/root 2259 2019-12-25 16:15 ./usr/share/man/man1/samtools-collate.1.gz -rw-r--r-- root/root 1750 2019-12-25 16:15 ./usr/share/man/man1/samtools-depad.1.gz -rw-r--r-- root/root 2330 2019-12-25 16:15 ./usr/share/man/man1/samtools-depth.1.gz -rw-r--r-- root/root 1376 2019-12-25 16:15 ./usr/share/man/man1/samtools-dict.1.gz -rw-r--r-- root/root 2026 2019-12-25 16:15 ./usr/share/man/man1/samtools-faidx.1.gz -rw-r--r-- root/root 3451 2019-12-25 16:15 ./usr/share/man/man1/samtools-fasta.1.gz lrwxrwxrwx root/root 0 2019-12-25 16:15 ./usr/share/man/man1/samtools-fastq.1.gz -> samtools-fasta.1.gz -rw-r--r-- root/root 1436 2019-12-25 16:15 ./usr/share/man/man1/samtools-fixmate.1.gz -rw-r--r-- root/root 1378 2019-12-25 16:15 ./usr/share/man/man1/samtools-flags.1.gz -rw-r--r-- root/root 2438 2019-12-25 16:15 ./usr/share/man/man1/samtools-flagstat.1.gz -rw-r--r-- root/root 2077 2019-12-25 16:15 ./usr/share/man/man1/samtools-fqidx.1.gz -rw-r--r-- root/root 1413 2019-12-25 16:15 ./usr/share/man/man1/samtools-idxstats.1.gz -rw-r--r-- root/root 1546 2019-12-25 16:15 ./usr/share/man/man1/samtools-index.1.gz -rw-r--r-- root/root 2711 2019-12-25 16:15 ./usr/share/man/man1/samtools-markdup.1.gz -rw-r--r-- root/root 2692 2019-12-25 16:15 ./usr/share/man/man1/samtools-merge.1.gz -rw-r--r-- root/root 6288 2019-12-25 16:15 ./usr/share/man/man1/samtools-mpileup.1.gz -rw-r--r-- root/root 1424 2019-12-25 16:15 ./usr/share/man/man1/samtools-phase.1.gz -rw-r--r-- root/root 1675 2019-12-25 16:15 ./usr/share/man/man1/samtools-quickcheck.1.gz -rw-r--r-- root/root 1954 2019-12-25 16:15 ./usr/share/man/man1/samtools-reheader.1.gz -rw-r--r-- root/root 1468 2019-12-25 16:15 ./usr/share/man/man1/samtools-rmdup.1.gz -rw-r--r-- root/root 3096 2019-12-25 16:15 ./usr/share/man/man1/samtools-sort.1.gz -rw-r--r-- root/root 1592 2019-12-25 16:15 ./usr/share/man/man1/samtools-split.1.gz -rw-r--r-- root/root 5927 2019-12-25 16:15 ./usr/share/man/man1/samtools-stats.1.gz -rw-r--r-- root/root 1425 2019-12-25 16:15 ./usr/share/man/man1/samtools-targetcut.1.gz -rw-r--r-- root/root 1630 2019-12-25 16:15 ./usr/share/man/man1/samtools-tview.1.gz -rw-r--r-- root/root 4612 2019-12-25 16:15 ./usr/share/man/man1/samtools-view.1.gz -rw-r--r-- root/root 11236 2019-12-25 16:15 ./usr/share/man/man1/samtools.1.gz -rw-r--r-- root/root 410 2019-12-25 16:15 ./usr/share/man/man1/samtools.pl.1.gz -rw-r--r-- root/root 518 2019-12-25 16:15 ./usr/share/man/man1/wgsim.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [630 B] Get:5 copy:/<>/apt_archive ./ Packages [700 B] Fetched 2293 B in 0s (120 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armel t1utils 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 9287 kB of archives. After this operation, 26.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.0 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.30.1-1 [649 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libberkeleydb-perl amd64 0.62-1+b1 [124 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b4 [105 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.43-2 [15.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.21-1 [368 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-5 [26.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.42-1 [82.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.008000-1 [332 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-2+b1 [34.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.42.0 [1304 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9287 kB in 0s (29.1 MB/s) Selecting previously unselected package readline-common. (Reading database ... 23241 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.0_all.deb ... Unpacking netbase (6.0) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up lintian (2.42.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.29-6) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 23492 Build-Time: 67 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 25 Job: samtools_1.10-3 Lintian: pass Machine Architecture: amd64 Package: samtools Package-Time: 104 Source-Version: 1.10-3 Space: 23492 Status: successful Version: 1.10-3 -------------------------------------------------------------------------------- Finished at 2019-12-27T21:24:51Z Build needed 00:01:44, 23492k disk space