sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | samtools 1.10-3 (mips64el) Sat, 21 Mar 2020 20:14:01 +0000 | +==============================================================================+ Package: samtools Version: 1.10-3 Source Version: 1.10-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-0121a7f8-b399-43df-b690-bf0129dc40ca' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-snwd5F/resolver-SsqKsq' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-21-0821.31.pdiff [4765 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-21-1424.32.pdiff [14.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-21-1424.32.pdiff [14.8 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-21-0821.31.pdiff [34.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-21-1424.32.pdiff [16.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-21-1424.32.pdiff [16.2 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [7900 kB] Fetched 8173 kB in 1s (5510 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After this operation, 60.4 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9 amd64 9.3.0-5 [10.0 MB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9 amd64 9.3.0-5 [9713 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5 amd64 9.3.0-5 [391 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev amd64 9.3.0-5 [2356 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-base amd64 9.3.0-5 [196 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.7 MB in 0s (96.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12837 files and directories currently installed.) Preparing to unpack .../gcc-9_9.3.0-5_amd64.deb ... Unpacking gcc-9 (9.3.0-5) over (9.3.0-3) ... Preparing to unpack .../cpp-9_9.3.0-5_amd64.deb ... Unpacking cpp-9 (9.3.0-5) over (9.3.0-3) ... Preparing to unpack .../libasan5_9.3.0-5_amd64.deb ... Unpacking libasan5:amd64 (9.3.0-5) over (9.3.0-3) ... Preparing to unpack .../libgcc-9-dev_9.3.0-5_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.3.0-5) over (9.3.0-3) ... Preparing to unpack .../gcc-9-base_9.3.0-5_amd64.deb ... Unpacking gcc-9-base:amd64 (9.3.0-5) over (9.3.0-3) ... Setting up gcc-9-base:amd64 (9.3.0-5) ... Setting up libasan5:amd64 (9.3.0-5) ... Setting up cpp-9 (9.3.0-5) ... Setting up libgcc-9-dev:amd64 (9.3.0-5) ... Setting up gcc-9 (9.3.0-5) ... Processing triggers for libc-bin (2.30-2) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/samtools.git Please use: git clone https://salsa.debian.org/med-team/samtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4480 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main samtools 1.10-3 (dsc) [2223 B] Get:2 http://debian.oregonstate.edu/debian unstable/main samtools 1.10-3 (tar) [4458 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main samtools 1.10-3 (diff) [20.2 kB] Fetched 4480 kB in 0s (72.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/samtools-snwd5F/samtools-1.10' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-snwd5F' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), bash-completion, libncurses5-dev, libhts-dev (>= 1.10), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 12), bash-completion, libncurses5-dev, libhts-dev (>= 1.10), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [497 B] Get:5 copy:/<>/apt_archive ./ Packages [571 B] Fetched 2025 B in 0s (79.3 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-8-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libbsd0 libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:mips64el libelf1 libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-8-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc1-mips64el-cross libgcrypt20:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgssapi-krb5-2:mips64el libhogweed5:mips64el libhts-dev:mips64el libhts3:mips64el libicu63 libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el libldap-common liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libncurses-dev:mips64el libncurses5-dev:mips64el libncurses6:mips64el libncursesw6:mips64el libnettle7:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libssh2-1:mips64el libssl1.1:mips64el libstdc++-8-dev:mips64el libstdc++-9-dev libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtinfo6:mips64el libtool libuchardet0 libunistring2:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db pkg-config po-debconf sensible-utils tabix:mips64el ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mips64el-linux-gnuabi64 gcc-9-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el rng-tools:mips64el gnutls-bin:mips64el krb5-doc:mips64el krb5-user:mips64el liblzma-doc:mips64el ncurses-doc:mips64el libstdc++-8-doc:mips64el libstdc++-9-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips64el ca-certificates:mips64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:mips64el krb5-locales:mips64el libgpm2:mips64el publicsuffix:mips64el libsasl2-modules:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-8-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libbsd0 libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate0:mips64el libelf1 libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-8-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc1-mips64el-cross libgcrypt20:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el libgssapi-krb5-2:mips64el libhogweed5:mips64el libhts-dev:mips64el libhts3:mips64el libicu63 libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el libldap-common liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libncurses-dev:mips64el libncurses5-dev:mips64el libncurses6:mips64el libncursesw6:mips64el libnettle7:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libssh2-1:mips64el libssl1.1:mips64el libstdc++-8-dev:mips64el libstdc++-9-dev libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtinfo6:mips64el libtool libuchardet0 libunistring2:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db pkg-config po-debconf sbuild-build-depends-main-dummy:mips64el sensible-utils tabix:mips64el ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 90.1 MB of archives. After this operation, 358 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1000 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf-archive all 20190106-2.1 [746 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10-20200312-2 [196 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 bash-completion all 1:2.10-1 [228 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.34-2cross5 [2313 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.15-1 [104 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-2 [2633 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-5 [1699 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-5 [10.7 MB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64-base amd64 9.2.1-24cross1 [195 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [6464 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [16.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.2.1-24cross1 [191 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.29-8cross1 [1324 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips64el-cross all 1:9.2.1-24cross1 [69.2 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 9.2.1-24cross1 [76.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 9.2.1-24cross1 [7436 B] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mips64el-cross all 9.2.1-24cross1 [247 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [6811 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1484 B] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 9.2.1-24cross1 [398 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.4.8-1cross1 [1139 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.29-8cross1 [2456 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mips64el-cross all 9.2.1-24cross1 [1725 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [7046 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1192 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-4 [709 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.8 [6704 B] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.1-1 [1341 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-8-base mips64el 8.4.0-1 [194 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10-20200312-2 [69.6 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.15-1 [95.5 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.30-2 [2553 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10-20200312-2 [7520 B] Get:85 http://debian.oregonstate.edu/debian unstable/main mips64el libbrotli1 mips64el 1.0.7-6 [273 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.8-2 [47.3 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.4.19-1 [1068 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.15-1 [118 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.30-2 [2475 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-dev mips64el 1.0.8-2 [33.2 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.45.5-2 [71.2 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libgmp10 mips64el 2:6.2.0+dfsg-4 [241 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libnettle7 mips64el 3.5.1+really3.5.1-2 [236 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el libhogweed5 mips64el 3.5.1+really3.5.1-2 [132 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libunistring2 mips64el 0.9.10-2 [376 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mips64el libidn2-0 mips64el 2.3.0-1 [84.5 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mips64el libffi7 mips64el 3.3-3 [22.5 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mips64el libp11-kit0 mips64el 0.23.20-1 [269 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mips64el libtasn1-6 mips64el 4.16.0-2 [52.6 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mips64el libgnutls30 mips64el 3.6.12-2 [1066 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6.1-2 [15.0 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.17-6 [62.6 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.17-6 [121 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1e-1 [1143 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.17-6 [333 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.17-6 [141 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mips64el libdb5.3 mips64el 5.3.28+dfsg1-0.6 [597 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-modules-db mips64el 2.1.27+dfsg-2 [68.3 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-2 mips64el 2.1.27+dfsg-2 [102 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.49+dfsg-2 [92.0 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mips64el libldap-2.4-2 mips64el 2.4.49+dfsg-2 [206 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main mips64el libnghttp2-14 mips64el 1.40.0-1 [80.8 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mips64el libpsl5 mips64el 0.21.0-1 [54.9 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b1 [56.0 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main mips64el libgpg-error0 mips64el 1.37-1 [68.9 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mips64el libgcrypt20 mips64el 1.8.5-5 [497 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main mips64el libssh2-1 mips64el 1.8.0-2.1 [134 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl3-gnutls mips64el 7.68.0-1 [296 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate0 mips64el 1.5-3 [50.2 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10-20200312-2 [89.5 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-8-dev mips64el 8.4.0-1 [235 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma5 mips64el 5.2.4-1+b1 [151 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main mips64el libhts3 mips64el 1.10.2-3 [346 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma-dev mips64el 5.2.4-1+b1 [214 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main mips64el libhts-dev mips64el 1.10.2-3 [4862 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main mips64el libtinfo6 mips64el 6.2-1 [328 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main mips64el libncurses6 mips64el 6.2-1 [89.9 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main mips64el libncursesw6 mips64el 6.2-1 [118 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main mips64el libncurses-dev mips64el 6.2-1 [357 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main mips64el libncurses5-dev mips64el 6.2-1 [932 B] Get:133 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10-20200312-2 [434 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-8-dev mips64el 8.4.0-1 [1582 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main mips64el tabix mips64el 1.10.2-3 [363 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 90.1 MB in 1s (92.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12828 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../006-autoconf-archive_20190106-2.1_all.deb ... Unpacking autoconf-archive (20190106-2.1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../007-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:mips64el. Preparing to unpack .../008-gcc-10-base_10-20200312-2_mips64el.deb ... Unpacking gcc-10-base:mips64el (10-20200312-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package bash-completion. Preparing to unpack .../010-bash-completion_1%3a2.10-1_all.deb ... Unpacking bash-completion (1:2.10-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../011-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../012-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../013-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../016-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../021-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-mips64el-linux-gnuabi64. Preparing to unpack .../022-binutils-mips64el-linux-gnuabi64_2.34-2cross5_amd64.deb ... Unpacking binutils-mips64el-linux-gnuabi64 (2.34-2cross5) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../023-libcrypt-dev_1%3a4.4.15-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.15-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../024-libc6-dev_2.30-2_amd64.deb ... Unpacking libc6-dev:amd64 (2.30-2) ... Selecting previously unselected package libstdc++-9-dev:amd64. Preparing to unpack .../025-libstdc++-9-dev_9.3.0-5_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.3.0-5) ... Selecting previously unselected package g++-9. Preparing to unpack .../026-g++-9_9.3.0-5_amd64.deb ... Unpacking g++-9 (9.3.0-5) ... Selecting previously unselected package g++. Preparing to unpack .../027-g++_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++ (4:9.2.1-3.1) ... Selecting previously unselected package build-essential. Preparing to unpack .../028-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-9-mips64el-linux-gnuabi64-base:amd64. Preparing to unpack .../029-gcc-9-mips64el-linux-gnuabi64-base_9.2.1-24cross1_amd64.deb ... Unpacking gcc-9-mips64el-linux-gnuabi64-base:amd64 (9.2.1-24cross1) ... Selecting previously unselected package cpp-9-mips64el-linux-gnuabi64. Preparing to unpack .../030-cpp-9-mips64el-linux-gnuabi64_9.2.1-24cross1_amd64.deb ... Unpacking cpp-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Selecting previously unselected package cpp-mips64el-linux-gnuabi64. Preparing to unpack .../031-cpp-mips64el-linux-gnuabi64_4%3a9.2.1-4.1_amd64.deb ... Unpacking cpp-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Selecting previously unselected package cross-config. Preparing to unpack .../032-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base-mipsen. Preparing to unpack .../033-gcc-9-cross-base-mipsen_9.2.1-24cross1_all.deb ... Unpacking gcc-9-cross-base-mipsen (9.2.1-24cross1) ... Selecting previously unselected package libc6-mips64el-cross. Preparing to unpack .../034-libc6-mips64el-cross_2.29-8cross1_all.deb ... Unpacking libc6-mips64el-cross (2.29-8cross1) ... Selecting previously unselected package libgcc1-mips64el-cross. Preparing to unpack .../035-libgcc1-mips64el-cross_1%3a9.2.1-24cross1_all.deb ... Unpacking libgcc1-mips64el-cross (1:9.2.1-24cross1) ... Selecting previously unselected package libgomp1-mips64el-cross. Preparing to unpack .../036-libgomp1-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libgomp1-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package libatomic1-mips64el-cross. Preparing to unpack .../037-libatomic1-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libatomic1-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package libgcc-9-dev-mips64el-cross. Preparing to unpack .../038-libgcc-9-dev-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libgcc-9-dev-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package gcc-9-mips64el-linux-gnuabi64. Preparing to unpack .../039-gcc-9-mips64el-linux-gnuabi64_9.2.1-24cross1_amd64.deb ... Unpacking gcc-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Selecting previously unselected package gcc-mips64el-linux-gnuabi64. Preparing to unpack .../040-gcc-mips64el-linux-gnuabi64_4%3a9.2.1-4.1_amd64.deb ... Unpacking gcc-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Selecting previously unselected package libstdc++6-mips64el-cross. Preparing to unpack .../041-libstdc++6-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libstdc++6-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package linux-libc-dev-mips64el-cross. Preparing to unpack .../042-linux-libc-dev-mips64el-cross_5.4.8-1cross1_all.deb ... Unpacking linux-libc-dev-mips64el-cross (5.4.8-1cross1) ... Selecting previously unselected package libc6-dev-mips64el-cross. Preparing to unpack .../043-libc6-dev-mips64el-cross_2.29-8cross1_all.deb ... Unpacking libc6-dev-mips64el-cross (2.29-8cross1) ... Selecting previously unselected package libstdc++-9-dev-mips64el-cross. Preparing to unpack .../044-libstdc++-9-dev-mips64el-cross_9.2.1-24cross1_all.deb ... Unpacking libstdc++-9-dev-mips64el-cross (9.2.1-24cross1) ... Selecting previously unselected package g++-9-mips64el-linux-gnuabi64. Preparing to unpack .../045-g++-9-mips64el-linux-gnuabi64_9.2.1-24cross1_amd64.deb ... Unpacking g++-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Selecting previously unselected package g++-mips64el-linux-gnuabi64. Preparing to unpack .../046-g++-mips64el-linux-gnuabi64_4%3a9.2.1-4.1_amd64.deb ... Unpacking g++-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../047-libconfig-inifiles-perl_3.000002-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000002-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../048-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../049-libicu63_63.2-3_amd64.deb ... Unpacking libicu63:amd64 (63.2-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../050-libxml2_2.9.10+dfsg-4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-4) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../051-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../052-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../053-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../054-libxml-libxml-perl_2.0134+dfsg-2_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../055-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../056-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../057-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../058-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../059-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../060-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../061-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-mips64el. Preparing to unpack .../062-crossbuild-essential-mips64el_12.8_all.deb ... Unpacking crossbuild-essential-mips64el (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../063-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../064-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../065-libdebhelper-perl_12.9_all.deb ... Unpacking libdebhelper-perl (12.9) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../066-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../067-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../068-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../069-dh-strip-nondeterminism_1.6.3-2_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-2) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../070-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../071-dwz_0.13-5_amd64.deb ... 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Preparing to unpack .../133-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package tabix:mips64el. Preparing to unpack .../134-tabix_1.10.2-3_mips64el.deb ... Unpacking tabix:mips64el (1.10.2-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy:mips64el. Preparing to unpack .../135-sbuild-build-depends-main-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000002-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.64.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.9) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gcc-9-mips64el-linux-gnuabi64-base:amd64 (9.2.1-24cross1) ... Setting up linux-libc-dev:mips64el (5.4.19-1) ... Setting up libc6-mips64el-cross (2.29-8cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up autoconf-archive (20190106-2.1) ... Setting up file (1:5.38-4) ... Setting up gcc-9-cross-base-mipsen (9.2.1-24cross1) ... Setting up libldap-common (2.4.49+dfsg-2) ... Setting up libyaml-perl (1.30-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.34-2cross5) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:mips64el (10-20200312-2) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up bash-completion (1:2.10-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mips64el (8.4.0-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up pkg-config (0.29-6) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.15-1) ... 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.3.0-5) ... Setting up autoconf (2.69-11.1) ... Setting up libstdc++6-mips64el-cross (9.2.1-24cross1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libgcc-9-dev-mips64el-cross (9.2.1-24cross1) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libstdc++-9-dev-mips64el-cross (9.2.1-24cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mips64el (12.8) ... Setting up libcrypt1:mips64el (1:4.4.15-1) ... Setting up libgcc-s1:mips64el (10-20200312-2) ... Setting up dh-autoreconf (19) ... Setting up libc6:mips64el (2.30-2) ... Setting up libnettle7:mips64el (3.5.1+really3.5.1-2) ... Setting up libcrypt-dev:mips64el (1:4.4.15-1) ... Setting up libtasn1-6:mips64el (4.16.0-2) ... Setting up libc6-dev:mips64el (2.30-2) ... Setting up libbz2-1.0:mips64el (1.0.8-2) ... Setting up libdb5.3:mips64el (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:mips64el (10-20200312-2) ... Setting up libtinfo6:mips64el (6.2-1) ... Setting up libbz2-dev:mips64el (1.0.8-2) ... Setting up libkeyutils1:mips64el (1.6.1-2) ... Setting up liblzma5:mips64el (5.2.4-1+b1) ... Setting up libgpg-error0:mips64el (1.37-1) ... Setting up libssl1.1:mips64el (1.1.1e-1) ... Setting up libbrotli1:mips64el (1.0.7-6) ... Setting up libffi7:mips64el (3.3-3) ... Setting up libnghttp2-14:mips64el (1.40.0-1) ... Setting up libunistring2:mips64el (0.9.10-2) ... Setting up libdeflate0:mips64el (1.5-3) ... Setting up libgcrypt20:mips64el (1.8.5-5) ... Setting up debhelper (12.9) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libidn2-0:mips64el (2.3.0-1) ... Setting up libcom-err2:mips64el (1.45.5-2) ... Setting up libgomp1:mips64el (10-20200312-2) ... Setting up libkrb5support0:mips64el (1.17-6) ... Setting up libsasl2-modules-db:mips64el (2.1.27+dfsg-2) ... Setting up libgmp10:mips64el (2:6.2.0+dfsg-4) ... Setting up libncurses6:mips64el (6.2-1) ... Setting up libp11-kit0:mips64el (0.23.20-1) ... Setting up libatomic1:mips64el (10-20200312-2) ... Setting up libncursesw6:mips64el (6.2-1) ... Setting up libk5crypto3:mips64el (1.17-6) ... Setting up libgcc-8-dev:mips64el (8.4.0-1) ... Setting up libsasl2-2:mips64el (2.1.27+dfsg-2) ... Setting up liblzma-dev:mips64el (5.2.4-1+b1) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Setting up libssh2-1:mips64el (1.8.0-2.1) ... Setting up libkrb5-3:mips64el (1.17-6) ... Setting up libstdc++-8-dev:mips64el (8.4.0-1) ... Setting up libncurses-dev:mips64el (6.2-1) ... Setting up libpsl5:mips64el (0.21.0-1) ... Setting up libhogweed5:mips64el (3.5.1+really3.5.1-2) ... Setting up libgnutls30:mips64el (3.6.12-2) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libgssapi-krb5-2:mips64el (1.17-6) ... Setting up libncurses5-dev:mips64el (6.2-1) ... Setting up libldap-2.4-2:mips64el (2.4.49+dfsg-2) ... Setting up libcurl3-gnutls:mips64el (7.68.0-1) ... Setting up tabix:mips64el (1.10.2-3) ... Setting up libhts3:mips64el (1.10.2-3) ... Setting up libhts-dev:mips64el (1.10.2-3) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.30-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-5 dpkg-dev_1.19.7 g++-9_9.3.0-5 gcc-8_8.4.0-1 gcc-9_9.3.0-5 libc6-dev_2.30-2 libstdc++-8-dev_8.4.0-1 libstdc++-9-dev_9.3.0-5 libstdc++-9-dev-mips64el-cross_9.2.1-24cross1 libstdc++6_10-20200312-2 libstdc++6-mips64el-cross_9.2.1-24cross1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_2.0.0 autoconf_2.69-11.1 autoconf-archive_20190106-2.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 bash-completion_1:2.10-1 binutils_2.34-5 binutils-common_2.34-5 binutils-mips64el-linux-gnuabi64_2.34-2cross5 binutils-x86-64-linux-gnu_2.34-5 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-1 cpp-9_9.3.0-5 cpp-9-mips64el-linux-gnuabi64_9.2.1-24cross1 cpp-mips64el-linux-gnuabi64_4:9.2.1-4.1 cross-config_2.6.15-3 crossbuild-essential-mips64el_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-5 g++-9-mips64el-linux-gnuabi64_9.2.1-24cross1 g++-mips64el-linux-gnuabi64_4:9.2.1-4.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200312-2 gcc-8_8.4.0-1 gcc-8-base_8.4.0-1 gcc-9_9.3.0-5 gcc-9-base_9.3.0-5 gcc-9-cross-base-mipsen_9.2.1-24cross1 gcc-9-mips64el-linux-gnuabi64_9.2.1-24cross1 gcc-9-mips64el-linux-gnuabi64-base_9.2.1-24cross1 gcc-mips64el-linux-gnuabi64_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-3 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.0.0 libarchive-zip-perl_1.68-1 libasan5_9.3.0-5 libatomic1_10-20200312-2 libatomic1-mips64el-cross_9.2.1-24cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-5 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.30-2 libc-dev-bin_2.30-2 libc6_2.30-2 libc6-dev_2.30-2 libc6-dev-mips64el-cross_2.29-8cross1 libc6-mips64el-cross_2.29-8cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10-20200312-2 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-5 libctf0_2.34-5 libcurl3-gnutls_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.5-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.4.0-1 libgcc-9-dev_9.3.0-5 libgcc-9-dev-mips64el-cross_9.2.1-24cross1 libgcc-s1_10-20200312-2 libgcc1_1:10-20200312-2 libgcc1-mips64el-cross_1:9.2.1-24cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200312-2 libgomp1-mips64el-cross_9.2.1-24cross1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-3 libhts3_1.10.2-3 libicu63_63.2-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10-20200312-2 libk5crypto3_1.17-6 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-2 liblocale-gettext-perl_1.07-4 liblsan0_10-20200312-2 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-1 libncurses-dev_6.2-1 libncurses5-dev_6.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpsl5_0.21.0-1 libquadmath0_10-20200312-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1 libselinux1_3.0-1+b2 libsemanage-common_3.0-1 libsemanage1_3.0-1+b2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1e-1 libstdc++-8-dev_8.4.0-1 libstdc++-9-dev_9.3.0-5 libstdc++-9-dev-mips64el-cross_9.2.1-24cross1 libstdc++6_10-20200312-2 libstdc++6-mips64el-cross_9.2.1-24cross1 libsub-override-perl_0.09-2 libsystemd0_245.2-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200312-2 libubsan1_10-20200312-2 libuchardet0_0.0.6-3 libudev1_245.2-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-4 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 linux-libc-dev-mips64el-cross_5.4.8-1cross1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tabix_1.10.2-3 tar_1.30+dfsg-7 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: samtools Binary: samtools, samtools-test Architecture: any all Version: 1.10-3 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://www.htslib.org/ Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/samtools Vcs-Git: https://salsa.debian.org/med-team/samtools.git Testsuite: autopkgtest Testsuite-Triggers: tabix Build-Depends: debhelper-compat (= 12), bash-completion, libio-pty-perl , libncurses5-dev, libhts-dev (>= 1.10), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev Package-List: samtools deb science optional arch=any samtools-test deb science optional arch=all Checksums-Sha1: 98b24393629d63f2203f59c108b840b1e046f209 4457760 samtools_1.10.orig.tar.gz d893631788621621c73c9a768ccf425768f4bd71 20216 samtools_1.10-3.debian.tar.xz Checksums-Sha256: 382843e85fdb55868cebaaf2585c43776762d099581341b5803677de5ed117a9 4457760 samtools_1.10.orig.tar.gz 2fd21c4903fbcf68d1992e5e82a03f16c0d67e650a3ff2c6dac2503be23046a4 20216 samtools_1.10-3.debian.tar.xz Files: dc147b46cabbb2c168529e474e947b1d 4457760 samtools_1.10.orig.tar.gz b86d60c5a9398e8b7bab1a8eb216f5e1 20216 samtools_1.10-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl4DlJMACgkQPCZ2P2xn 5uJs9A/+OqexnzvF5QfZNKlCV+cahS2sg9W0+xd1dI30OO8HQ93rd3X3Yg0MkvOP /02DWiEWYlcO/HG35ax9klms0gUrcp3Cv6KOP/VgrrIhgb9iWUrc10RrAGLaJUpN eVkNnGhHRNv/A7LegC5NEibl6kH5woIOIU+b0oaakmJCpRZwrWbzj9HblAi+tK3z iMZJy0+HfJeXh9tCL5CLl0aI2Z22pf0gNqCz1hkm14k19g73P1XoJPqgJLAy3yiU vViZHJWpJhdhi6DHzxWTffCyl2dUYJp8Fp17hiUvXodSeQ36fVbHVPycp1bj54KF g10a+ibbnLQFUlI3oNjvbDgm5AW+Yh6u+p1oC9aC41OmItUMCnfIokIrLNEzgUwK U64USSl9kzV/zHXddngnoiYRKGUhXJ5fcGnh6ACfW1X1u8SKIhrXBZgdXJ/AlCNZ RMzFefhBMrr+78o7sXuAm2WhRPDNid5uN6rjfTOLxogUHysKsCYbKVTZPOlk0oK8 EHRA2aojBgNMBLYLOu3BJunX06CPg0uE4FDz1O5nXz+32g9Q3t3MdhZLwknM2yWL f35joUtQgB/pWVHQhd/GLiyZo2b4D75MUmkNwKSnNogVW1+l/4h2HMLsR3Cn3O6l vZYqcMt8Ac9sEQ7I3WoXEoQW8oB035XJLkCgR7A+fP1w1HNonMU= =5f+U -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 25 16:55:47 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./samtools_1.10-3.dsc dpkg-source: info: extracting samtools in /<> dpkg-source: info: unpacking samtools_1.10.orig.tar.gz dpkg-source: info: unpacking samtools_1.10-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-0121a7f8-b399-43df-b690-bf0129dc40ca SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package samtools dpkg-buildpackage: info: source version 1.10-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el dpkg-source: info: using options from samtools-1.10/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f config.mk touch config.mk dh_auto_clean -- make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libbam.a libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview rm -f config.cache config.h config.log config.mk config.status rm -f TAGS rm -rf autom4te.cache make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/samtools.substvars debian/samtools-test.substvars debian/files rm -fr -- debian/samtools/ debian/tmp/ debian/samtools-test/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' touch config.mk aclocal --force -I debian/ -I /usr/share/aclocal configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level autoconf configure.ac:63: warning: AC_CONFIG_SUBDIRS: you should use literals ../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:63: the top level dh_auto_configure -- --with-htslib=system ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --with-htslib=system configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to accept ISO C89... none needed checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for htslib/sam.h... yes checking for hts_version in -lhts... no configure: error: HTSlib development files not found Samtools uses HTSlib to parse bioinformatics file formats etc. Building it requires an unpacked HTSlib source tree (which will be built in conjunction with samtools) or a previously-installed HTSlib. In either case you may need to configure --with-htslib=DIR to locate the appropriate HTSlib. FAILED. You must supply an HTSlib in order to build samtools successfully. tail -v -n \+0 config.log ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Samtools configure 1.10, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --with-htslib=system ## --------- ## ## Platform. ## ## --------- ## hostname = gcc131.bak.milne.osuosl.org uname -m = x86_64 uname -r = 4.19.0-6-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:1770: loading site script /etc/dpkg-cross/cross-config.mips64el | . `dirname $ac_site_file`/cross-config.cache configure:2155: checking for mips64el-linux-gnuabi64-gcc configure:2171: found /usr/bin/mips64el-linux-gnuabi64-gcc configure:2182: result: mips64el-linux-gnuabi64-gcc configure:2451: checking for C compiler version configure:2460: mips64el-linux-gnuabi64-gcc --version >&5 mips64el-linux-gnuabi64-gcc (Debian 9.2.1-24) 9.2.1 20200117 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2471: $? = 0 configure:2460: mips64el-linux-gnuabi64-gcc -v >&5 Using built-in specs. COLLECT_GCC=mips64el-linux-gnuabi64-gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc-cross/mips64el-linux-gnuabi64/9/lto-wrapper Target: mips64el-linux-gnuabi64 Configured with: ../src/configure -v --with-pkgversion='Debian 9.2.1-24' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --without-target-system-zlib --enable-libpth-m2 --enable-multiarch --disable-werror --enable-multilib --with-mips-plt --with-arch-64=mips64r2 --with-madd4=no --enable-targets=all --with-arch-32=mips32r2 --with-fp-32=xx --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mips64el-linux-gnuabi64 --program-prefix=mips64el-linux-gnuabi64- --includedir=/usr/mips64el-linux-gnuabi64/include --with-build-config=bootstrap-lto-lean --enable-link-mutex Thread model: posix gcc version 9.2.1 20200117 (Debian 9.2.1-24) configure:2471: $? = 0 configure:2460: mips64el-linux-gnuabi64-gcc -V >&5 mips64el-linux-gnuabi64-gcc: error: unrecognized command line option '-V' mips64el-linux-gnuabi64-gcc: fatal error: no input files compilation terminated. configure:2471: $? = 1 configure:2460: mips64el-linux-gnuabi64-gcc -qversion >&5 mips64el-linux-gnuabi64-gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? mips64el-linux-gnuabi64-gcc: fatal error: no input files compilation terminated. configure:2471: $? = 1 configure:2491: checking whether the C compiler works configure:2513: mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:2517: $? = 0 configure:2565: result: yes configure:2568: checking for C compiler default output file name configure:2570: result: a.out configure:2576: checking for suffix of executables configure:2583: mips64el-linux-gnuabi64-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5 configure:2587: $? = 0 configure:2609: result: configure:2631: checking whether we are cross compiling configure:2669: result: yes configure:2674: checking for suffix of object files configure:2696: mips64el-linux-gnuabi64-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:2700: $? = 0 configure:2721: result: o configure:2725: checking whether we are using the GNU C compiler configure:2744: mips64el-linux-gnuabi64-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:2744: $? = 0 configure:2753: result: yes configure:2762: checking whether mips64el-linux-gnuabi64-gcc accepts -g configure:2782: mips64el-linux-gnuabi64-gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:2782: $? = 0 configure:2823: result: yes configure:2840: checking for mips64el-linux-gnuabi64-gcc option to accept ISO C89 configure:2903: mips64el-linux-gnuabi64-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:2903: $? = 0 configure:2916: result: none needed configure:2937: checking for grep that handles long lines and -e configure:2995: result: /bin/grep configure:3020: checking for C compiler warning flags configure:3132: result: -Wall configure:3226: checking for special C compiler options needed for large files configure:3271: result: no configure:3277: checking for _FILE_OFFSET_BITS value needed for large files configure:3302: mips64el-linux-gnuabi64-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3302: $? = 0 configure:3334: result: no configure:3529: checking for htslib/sam.h configure:3529: mips64el-linux-gnuabi64-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3529: $? = 0 configure:3529: result: yes configure:3532: checking for hts_version in -lhts configure:3557: mips64el-linux-gnuabi64-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c -lhts >&5 /usr/lib/gcc-cross/mips64el-linux-gnuabi64/9/../../../../mips64el-linux-gnuabi64/bin/ld: /lib/mips64el-linux-gnuabi64/libpthread.so.0: undefined reference to `__twalk_r@GLIBC_PRIVATE' collect2: error: ld returned 1 exit status configure:3557: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Samtools" | #define PACKAGE_TARNAME "samtools" | #define PACKAGE_VERSION "1.10" | #define PACKAGE_STRING "Samtools 1.10" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char hts_version (); | int | main () | { | return hts_version (); | ; | return 0; | } configure:3566: result: no configure:3654: error: HTSlib development files not found Samtools uses HTSlib to parse bioinformatics file formats etc. Building it requires an unpacked HTSlib source tree (which will be built in conjunction with samtools) or a previously-installed HTSlib. In either case you may need to configure --with-htslib=DIR to locate the appropriate HTSlib. FAILED. You must supply an HTSlib in order to build samtools successfully. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CURSES_LIB_set=set ac_cv_env_CURSES_LIB_value=-lcurses ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-z,relro -Wl,-z,now' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=mips64el-linux-gnuabi64 ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_malloc_0_nonnull=yes ac_cv_func_realloc_0_nonnull=yes ac_cv_func_setpgrp_void=yes ac_cv_header_htslib_sam_h=yes ac_cv_lib_hts_hts_version=no ac_cv_objext=o ac_cv_path_GREP=/bin/grep ac_cv_prog_CC=mips64el-linux-gnuabi64-gcc ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no ax_cv_htslib=no ax_cv_htslib_which=install hts_cv_prog_cc_warnings=-Wall lt_cv_sys_lib_dlsearch_path_spec=' /lib/mips64el-linux-gnuabi64 /usr/lib/mips64el-linux-gnuabi64 /lib /usr/lib /usr/local/lib' ## ----------------- ## ## Output variables. ## ## ----------------- ## CC='mips64el-linux-gnuabi64-gcc' CFLAGS=' -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' CURSES_LIB='-lcurses' DEFS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EXEEXT='' GREP='/bin/grep' HTSDIR='' HTSLIB_CPPFLAGS='' HTSLIB_LDFLAGS='' Hinstall='' Hsource='' LDFLAGS='-Wl,-z,relro -Wl,-z,now' LIBOBJS='' LIBS='' LTLIBOBJS='' OBJEXT='o' PACKAGE_BUGREPORT='samtools-help@lists.sourceforge.net' PACKAGE_NAME='Samtools' PACKAGE_STRING='Samtools 1.10' PACKAGE_TARNAME='samtools' PACKAGE_URL='http://www.htslib.org/' PACKAGE_VERSION='1.10' PATH_SEPARATOR=':' SHELL='/bin/bash' ac_ct_CC='' bindir='${exec_prefix}/bin' build_alias='x86_64-linux-gnu' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host_alias='mips64el-linux-gnuabi64' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' libdir='${prefix}/lib/mips64el-linux-gnuabi64' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "Samtools" #define PACKAGE_TARNAME "samtools" #define PACKAGE_VERSION "1.10" #define PACKAGE_STRING "Samtools 1.10" #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" #define PACKAGE_URL "http://www.htslib.org/" configure: exit 1 dh_auto_configure: error: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --with-htslib=system returned exit code 1 make[1]: *** [debian/rules:23: override_dh_auto_configure] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:12: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-03-21T20:14:44Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 16956 Build-Time: 7 Distribution: unstable Fail-Stage: build Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 23 Job: samtools_1.10-3 Machine Architecture: amd64 Package: samtools Package-Time: 43 Source-Version: 1.10-3 Space: 16956 Status: attempted Version: 1.10-3 -------------------------------------------------------------------------------- Finished at 2020-03-21T20:14:44Z Build needed 00:00:43, 16956k disk space