sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | samtools 1.13-2 (armhf) Sat, 11 Sep 2021 21:48:58 +0000 | +==============================================================================+ Package: samtools Version: 1.13-2 Source Version: 1.13-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-84e9b373-812d-436e-bc40-276e11f9262c' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-kphQkN/resolver-tejiOF' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-09-11-2005.40-F-2021-09-11-0803.25.pdiff [31.2 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-09-11-2005.40-F-2021-09-11-0803.25.pdiff [31.2 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-09-11-2005.40-F-2021-09-11-0803.25.pdiff [52.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-09-11-2005.40-F-2021-09-11-0803.25.pdiff [52.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8480 kB] Fetched 8856 kB in 4s (2330 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgcrypt20 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 664 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libgcrypt20 amd64 1.9.4-3 [664 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 664 kB in 0s (11.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10514 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.9.4-3_amd64.deb ... Unpacking libgcrypt20:amd64 (1.9.4-3) over (1.9.4-2) ... Setting up libgcrypt20:amd64 (1.9.4-3) ... Processing triggers for libc-bin (2.32-2) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'samtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/samtools.git Please use: git clone https://salsa.debian.org/med-team/samtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4573 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main samtools 1.13-2 (dsc) [2290 B] Get:2 http://debian.oregonstate.edu/debian unstable/main samtools 1.13-2 (tar) [4550 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main samtools 1.13-2 (diff) [20.6 kB] Fetched 4573 kB in 0s (75.1 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/samtools-kphQkN/samtools-1.13' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-kphQkN' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), bash-completion, libncurses5-dev, libhts-dev (>= 1.13~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), bash-completion, libncurses5-dev, libhts-dev (>= 1.13~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [499 B] Get:5 copy:/<>/apt_archive ./ Packages [569 B] Fetched 2025 B in 0s (80.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-cross-base gcc-11-base:armhf gcc-11-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbz2-1.0:armhf libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libcurl3-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libdpkg-perl libelf1 libffi7:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libglib2.0-0 libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf libhts-dev:armhf libhts3:armhf libhtscodecs2:armhf libicu67 libidn2-0:armhf libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.4-2:armhf liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libncurses-dev:armhf libncurses5-dev:armhf libncurses6:armhf libncursesw6:armhf libnettle8:armhf libnghttp2-14:armhf libnsl-dev libnsl-dev:armhf libnsl2:armhf libp11-kit0:armhf libperl5.32 libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libsigsegv2 libssh2-1:armhf libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtinfo6:armhf libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf rpcsvc-proto sensible-utils tabix:armhf ucf zlib1g:armhf zlib1g-dev:armhf Suggested packages: gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf glibc-doc manpages-dev:armhf libcurl4-doc:armhf libgnutls28-dev:armhf libidn11-dev:armhf libkrb5-dev:armhf libldap2-dev:armhf librtmp-dev:armhf libssh2-1-dev:armhf gnupg git bzr gnutls-bin:armhf krb5-doc:armhf krb5-user:armhf liblzma-doc:armhf ncurses-doc:armhf libstdc++-10-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx bzip2-doc:armhf ca-certificates:armhf libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:armhf libldap-common:armhf libgpm2:armhf publicsuffix:armhf libsasl2-modules:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bash-completion binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-cross-base gcc-11-base:armhf gcc-11-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbz2-1.0:armhf libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libcurl3-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libdpkg-perl libelf1 libffi7:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libglib2.0-0 libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf libhts-dev:armhf libhts3:armhf libhtscodecs2:armhf libicu67 libidn2-0:armhf libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.4-2:armhf liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libncurses-dev:armhf libncurses5-dev:armhf libncurses6:armhf libncursesw6:armhf libnettle8:armhf libnghttp2-14:armhf libnsl-dev libnsl-dev:armhf libnsl2:armhf libp11-kit0:armhf libperl5.32 libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libsigsegv2 libssh2-1:armhf libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtinfo6:armhf libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 pkg-config po-debconf rpcsvc-proto sbuild-build-depends-main-dummy:armhf sensible-utils tabix:armhf ucf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 229 MB of archives. After this operation, 951 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [996 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-2 [142 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-5 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-5 [4125 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf-archive all 20210219-2 [767 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armhf gcc-11-base armhf 11.2.0-5 [205 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.4.0-3 [200 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 bash-completion all 1:2.11-3 [234 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-2 [819 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.37-5 [2864 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.32-2 [2255 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.3.0-10 [1751 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.3.0-10 [9435 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf-base amd64 10.3.0-8cross1 [205 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-arm-linux-gnueabihf amd64 10.3.0-8cross1 [44.1 MB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:10.2.1-1 [16.8 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.3.0-8cross1 [200 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-2cross1 [200 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.32-1cross4 [1100 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armhf-cross all 11.2.0-2cross1 [36.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 11.2.0-2cross1 [86.5 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 11.2.0-2cross1 [6672 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armhf-cross all 11.2.0-2cross1 [2059 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 11.2.0-2cross1 [439 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 11.2.0-2cross1 [795 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-armhf-cross all 10.3.0-8cross1 [690 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf amd64 10.3.0-8cross1 [50.4 MB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:10.2.1-1 [1468 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.10.46-4cross4 [1436 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.32-1cross4 [1762 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-armhf-cross all 10.3.0-8cross1 [1764 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-arm-linux-gnueabihf amd64 10.3.0-8cross1 [47.2 MB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:10.2.1-1 [1184 B] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-4 [696 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.9 [6708 B] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.1 [192 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.1 [1056 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 11.2.0-5 [36.4 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.32-2 [2338 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.4.0-3 [2778 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 11.2.0-5 [6908 B] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libbz2-1.0 armhf 1.0.8-4 [44.6 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.10.46-4 [1330 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.25-2 [96.8 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.25-2 [112 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libcom-err2 armhf 1.46.4-1 [74.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5support0 armhf 1.18.3-7 [62.5 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libk5crypto3 armhf 1.18.3-7 [110 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armhf libkeyutils1 armhf 1.6.1-2 [14.4 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armhf libssl1.1 armhf 1.1.1l-1 [1311 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5-3 armhf 1.18.3-7 [319 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armhf libgssapi-krb5-2 armhf 1.18.3-7 [143 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc3 armhf 1.3.2-2 [72.7 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc-dev armhf 1.3.2-2 [182 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.32-2 [1794 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armhf libbz2-dev armhf 1.0.8-4 [29.2 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armhf libgmp10 armhf 2:6.2.1+dfsg-2 [513 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armhf libnettle8 armhf 3.7.3-1 [284 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armhf libhogweed6 armhf 3.7.3-1 [308 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armhf libunistring2 armhf 0.9.10-6 [374 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armhf libidn2-0 armhf 2.3.2-2 [92.9 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armhf libffi7 armhf 3.3-6 [19.9 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armhf libp11-kit0 armhf 0.24.0-2 [324 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armhf libtasn1-6 armhf 4.17.0-2 [50.7 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armhf libgnutls30 armhf 3.7.2-2 [1292 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.8 [596 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armhf libldap-2.4-2 armhf 2.4.59+dfsg-1 [211 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-2 [85.4 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armhf libssh2-1 armhf 1.9.0-3 [154 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armhf libcurl3-gnutls armhf 7.74.0-1.3+b1 [306 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armhf libcurl4-gnutls-dev armhf 7.74.0-1.3+b1 [402 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main armhf libdeflate0 armhf 1.7-2 [43.3 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main armhf libdeflate-dev armhf 1.7-2 [39.9 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 11.2.0-5 [88.7 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 11.2.0-5 [479 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 11.2.0-5 [797 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.4.0-3 [658 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.68.4-1 [1390 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main armhf libhtscodecs2 armhf 1.1.1-3 [49.7 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main armhf liblzma5 armhf 5.2.5-2 [159 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main armhf libhts3 armhf 1.13+ds-2 [348 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main armhf liblzma-dev armhf 5.2.5-2 [220 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main armhf libhts-dev armhf 1.13+ds-2 [4050 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main armhf libtinfo6 armhf 6.2+20210905-1 [335 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main armhf libncurses6 armhf 6.2+20210905-1 [80.5 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main armhf libncursesw6 armhf 6.2+20210905-1 [107 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main armhf libncurses-dev armhf 6.2+20210905-1 [309 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main armhf libncurses5-dev armhf 6.2+20210905-1 [940 B] Get:149 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.4.0-3 [1773 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main armhf tabix armhf 1.13+ds-2 [316 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 229 MB in 2s (101 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10514 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-2_amd64.deb ... Unpacking bsdextrautils (2.37.2-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-5_all.deb ... Unpacking perl-modules-5.32 (5.32.1-5) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.1-5_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-5) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.1-5_amd64.deb ... Unpacking perl (5.32.1-5) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../008-autoconf-archive_20210219-2_all.deb ... Unpacking autoconf-archive (20210219-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../009-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-11-base:armhf. Preparing to unpack .../010-gcc-11-base_11.2.0-5_armhf.deb ... Unpacking gcc-11-base:armhf (11.2.0-5) ... Selecting previously unselected package gcc-9-base:armhf. Preparing to unpack .../011-gcc-9-base_9.4.0-3_armhf.deb ... Unpacking gcc-9-base:armhf (9.4.0-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../012-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package bash-completion. Preparing to unpack .../013-bash-completion_1%3a2.11-3_all.deb ... Unpacking bash-completion (1:2.11-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../014-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../015-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../016-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../017-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../018-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../019-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../020-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../021-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../022-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../023-automake_1%3a1.16.4-2_all.deb ... Unpacking automake (1:1.16.4-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../024-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package binutils-arm-linux-gnueabihf. Preparing to unpack .../025-binutils-arm-linux-gnueabihf_2.37-5_amd64.deb ... Unpacking binutils-arm-linux-gnueabihf (2.37-5) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../026-libcrypt-dev_1%3a4.4.25-2_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.25-2) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../027-libtirpc-dev_1.3.2-2_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.2-2) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../028-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../029-rpcsvc-proto_1.4.2-4_amd64.deb ... Unpacking rpcsvc-proto (1.4.2-4) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../030-libc6-dev_2.32-2_amd64.deb ... Unpacking libc6-dev:amd64 (2.32-2) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../031-libstdc++-10-dev_10.3.0-10_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.3.0-10) ... Selecting previously unselected package g++-10. Preparing to unpack .../032-g++-10_10.3.0-10_amd64.deb ... Unpacking g++-10 (10.3.0-10) ... Selecting previously unselected package g++. Preparing to unpack .../033-g++_4%3a10.2.1-1_amd64.deb ... Unpacking g++ (4:10.2.1-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../034-libdpkg-perl_1.20.9_all.deb ... Unpacking libdpkg-perl (1.20.9) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../035-dpkg-dev_1.20.9_all.deb ... Unpacking dpkg-dev (1.20.9) ... Selecting previously unselected package build-essential. Preparing to unpack .../036-build-essential_12.9_amd64.deb ... Unpacking build-essential (12.9) ... Selecting previously unselected package gcc-10-arm-linux-gnueabihf-base:amd64. Preparing to unpack .../037-gcc-10-arm-linux-gnueabihf-base_10.3.0-8cross1_amd64.deb ... Unpacking gcc-10-arm-linux-gnueabihf-base:amd64 (10.3.0-8cross1) ... Selecting previously unselected package cpp-10-arm-linux-gnueabihf. Preparing to unpack .../038-cpp-10-arm-linux-gnueabihf_10.3.0-8cross1_amd64.deb ... Unpacking cpp-10-arm-linux-gnueabihf (10.3.0-8cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabihf. Preparing to unpack .../039-cpp-arm-linux-gnueabihf_4%3a10.2.1-1_amd64.deb ... Unpacking cpp-arm-linux-gnueabihf (4:10.2.1-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../040-cross-config_2.6.18+nmu2_all.deb ... Unpacking cross-config (2.6.18+nmu2) ... Selecting previously unselected package gcc-10-cross-base. Preparing to unpack .../041-gcc-10-cross-base_10.3.0-8cross1_all.deb ... Unpacking gcc-10-cross-base (10.3.0-8cross1) ... Selecting previously unselected package gcc-11-cross-base. Preparing to unpack .../042-gcc-11-cross-base_11.2.0-2cross1_all.deb ... Unpacking gcc-11-cross-base (11.2.0-2cross1) ... Selecting previously unselected package libc6-armhf-cross. Preparing to unpack .../043-libc6-armhf-cross_2.32-1cross4_all.deb ... Unpacking libc6-armhf-cross (2.32-1cross4) ... Selecting previously unselected package libgcc-s1-armhf-cross. Preparing to unpack .../044-libgcc-s1-armhf-cross_11.2.0-2cross1_all.deb ... Unpacking libgcc-s1-armhf-cross (11.2.0-2cross1) ... Selecting previously unselected package libgomp1-armhf-cross. Preparing to unpack .../045-libgomp1-armhf-cross_11.2.0-2cross1_all.deb ... Unpacking libgomp1-armhf-cross (11.2.0-2cross1) ... Selecting previously unselected package libatomic1-armhf-cross. Preparing to unpack .../046-libatomic1-armhf-cross_11.2.0-2cross1_all.deb ... Unpacking libatomic1-armhf-cross (11.2.0-2cross1) ... Selecting previously unselected package libasan6-armhf-cross. Preparing to unpack .../047-libasan6-armhf-cross_11.2.0-2cross1_all.deb ... Unpacking libasan6-armhf-cross (11.2.0-2cross1) ... Selecting previously unselected package libstdc++6-armhf-cross. Preparing to unpack .../048-libstdc++6-armhf-cross_11.2.0-2cross1_all.deb ... Unpacking libstdc++6-armhf-cross (11.2.0-2cross1) ... Selecting previously unselected package libubsan1-armhf-cross. Preparing to unpack .../049-libubsan1-armhf-cross_11.2.0-2cross1_all.deb ... Unpacking libubsan1-armhf-cross (11.2.0-2cross1) ... Selecting previously unselected package libgcc-10-dev-armhf-cross. Preparing to unpack .../050-libgcc-10-dev-armhf-cross_10.3.0-8cross1_all.deb ... Unpacking libgcc-10-dev-armhf-cross (10.3.0-8cross1) ... Selecting previously unselected package gcc-10-arm-linux-gnueabihf. Preparing to unpack .../051-gcc-10-arm-linux-gnueabihf_10.3.0-8cross1_amd64.deb ... Unpacking gcc-10-arm-linux-gnueabihf (10.3.0-8cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabihf. Preparing to unpack .../052-gcc-arm-linux-gnueabihf_4%3a10.2.1-1_amd64.deb ... Unpacking gcc-arm-linux-gnueabihf (4:10.2.1-1) ... Selecting previously unselected package linux-libc-dev-armhf-cross. Preparing to unpack .../053-linux-libc-dev-armhf-cross_5.10.46-4cross4_all.deb ... Unpacking linux-libc-dev-armhf-cross (5.10.46-4cross4) ... Selecting previously unselected package libc6-dev-armhf-cross. Preparing to unpack .../054-libc6-dev-armhf-cross_2.32-1cross4_all.deb ... Unpacking libc6-dev-armhf-cross (2.32-1cross4) ... Selecting previously unselected package libstdc++-10-dev-armhf-cross. Preparing to unpack .../055-libstdc++-10-dev-armhf-cross_10.3.0-8cross1_all.deb ... Unpacking libstdc++-10-dev-armhf-cross (10.3.0-8cross1) ... Selecting previously unselected package g++-10-arm-linux-gnueabihf. Preparing to unpack .../056-g++-10-arm-linux-gnueabihf_10.3.0-8cross1_amd64.deb ... Unpacking g++-10-arm-linux-gnueabihf (10.3.0-8cross1) ... Selecting previously unselected package g++-arm-linux-gnueabihf. Preparing to unpack .../057-g++-arm-linux-gnueabihf_4%3a10.2.1-1_amd64.deb ... Unpacking g++-arm-linux-gnueabihf (4:10.2.1-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../058-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../059-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../060-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../061-libxml2_2.9.12+dfsg-4_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-4) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../062-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../063-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../064-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../065-libxml-libxml-perl_2.0134+dfsg-2+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../066-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../067-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... 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Setting up autoconf-archive (20210219-2) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up bash-completion (1:2.11-3) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up linux-libc-dev-armhf-cross (5.10.46-4cross4) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-5) ... Setting up gcc-10-cross-base (10.3.0-8cross1) ... Setting up gcc-11-cross-base (11.2.0-2cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.25-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.32-2) ... Setting up binutils-arm-linux-gnueabihf (2.37-5) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.12+dfsg-4) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-10-arm-linux-gnueabihf-base:amd64 (10.3.0-8cross1) ... Setting up gcc-9-base:armhf (9.4.0-3) ... Setting up libgomp1-armhf-cross (11.2.0-2cross1) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.3.0-10) ... Setting up g++-10 (10.3.0-10) ... Setting up libtool (2.4.6-15) ... Setting up libgcc-s1-armhf-cross (11.2.0-2cross1) ... Setting up libc6-dev-armhf-cross (2.32-1cross4) ... Setting up m4 (1.4.18-5) ... Setting up libatomic1-armhf-cross (11.2.0-2cross1) ... Setting up perl (5.32.1-5) ... Setting up libstdc++6-armhf-cross (11.2.0-2cross1) ... Setting up libasan6-armhf-cross (11.2.0-2cross1) ... Setting up cpp-10-arm-linux-gnueabihf (10.3.0-8cross1) ... Setting up libubsan1-armhf-cross (11.2.0-2cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.71-2) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgcc-10-dev-armhf-cross (10.3.0-8cross1) ... Setting up cpp-arm-linux-gnueabihf (4:10.2.1-1) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gcc-10-arm-linux-gnueabihf (10.3.0-8cross1) ... Setting up libstdc++-10-dev-armhf-cross (10.3.0-8cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up g++-10-arm-linux-gnueabihf (10.3.0-8cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up pkg-config (0.29.2-1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up gcc-arm-linux-gnueabihf (4:10.2.1-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up g++-arm-linux-gnueabihf (4:10.2.1-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up debhelper (13.5.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armhf (12.9) ... Setting up libgcc-s1:armhf (11.2.0-5) ... Setting up libc6:armhf (2.32-2) ... Setting up libtasn1-6:armhf (4.17.0-2) ... Setting up libbz2-1.0:armhf (1.0.8-4) ... Setting up libdb5.3:armhf (5.3.28+dfsg1-0.8) ... Setting up libstdc++6:armhf (11.2.0-5) ... Setting up libtinfo6:armhf (6.2+20210905-1) ... Setting up libhtscodecs2:armhf (1.1.1-3) ... Setting up libkeyutils1:armhf (1.6.1-2) ... Setting up liblzma5:armhf (5.2.5-2) ... Setting up libssl1.1:armhf (1.1.1l-1) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up libffi7:armhf (3.3-6) ... Setting up libnghttp2-14:armhf (1.43.0-1) ... Setting up libunistring2:armhf (0.9.10-6) ... Setting up libdeflate0:armhf (1.7-2) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-2) ... Setting up libcrypt1:armhf (1:4.4.25-2) ... Setting up libidn2-0:armhf (2.3.2-2) ... Setting up libcom-err2:armhf (1.46.4-1) ... Setting up libgomp1:armhf (11.2.0-5) ... Setting up libkrb5support0:armhf (1.18.3-7) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Setting up libasan5:armhf (9.4.0-3) ... Setting up libnettle8:armhf (3.7.3-1) ... Setting up libgmp10:armhf (2:6.2.1+dfsg-2) ... Setting up libncurses6:armhf (6.2+20210905-1) ... Setting up libp11-kit0:armhf (0.24.0-2) ... Setting up libatomic1:armhf (11.2.0-5) ... Setting up libncursesw6:armhf (6.2+20210905-1) ... Setting up libk5crypto3:armhf (1.18.3-7) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Setting up liblzma-dev:armhf (5.2.5-2) ... Setting up libubsan1:armhf (11.2.0-5) ... Setting up libcrypt-dev:armhf (1:4.4.25-2) ... Setting up libssh2-1:armhf (1.9.0-3) ... Setting up libkrb5-3:armhf (1.18.3-7) ... Setting up libdeflate-dev:armhf (1.7-2) ... Setting up tabix:armhf (1.13+ds-2) ... Setting up libpsl5:armhf (0.21.0-1.2) ... Setting up libhogweed6:armhf (3.7.3-1) ... Setting up libgcc-9-dev:armhf (9.4.0-3) ... Setting up libgnutls30:armhf (3.7.2-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:armhf (1.18.3-7) ... Setting up libtirpc3:armhf (1.3.2-2) ... Setting up libldap-2.4-2:armhf (2.4.59+dfsg-1) ... Setting up libcurl3-gnutls:armhf (7.74.0-1.3+b1) ... Setting up libcurl4-gnutls-dev:armhf (7.74.0-1.3+b1) ... Setting up libtirpc-dev:armhf (1.3.2-2) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libhts3:armhf (1.13+ds-2) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.32-2) ... Setting up libbz2-dev:armhf (1.0.8-4) ... Setting up libncurses-dev:armhf (6.2+20210905-1) ... Setting up libstdc++-9-dev:armhf (9.4.0-3) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ... Setting up libncurses5-dev:armhf (6.2+20210905-1) ... Setting up libhts-dev:armhf (1.13+ds-2) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.32-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-5 dpkg-dev_1.20.9 g++-10_10.3.0-10 gcc-10_10.3.0-10 libc6-dev_2.32-2 libstdc++-10-dev_10.3.0-10 libstdc++-10-dev-armhf-cross_10.3.0-8cross1 libstdc++-9-dev_9.4.0-3 libstdc++6_11.2.0-5 libstdc++6-armhf-cross_11.2.0-2cross1 linux-libc-dev_5.10.46-4 Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 autoconf-archive_20210219-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.51 bash_5.1-3+b1 bash-completion_1:2.11-3 binutils_2.37-5 binutils-arm-linux-gnueabihf_2.37-5 binutils-common_2.37-5 binutils-x86-64-linux-gnu_2.37-5 bsdextrautils_2.37.2-2 bsdutils_1:2.37.2-2 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.3.0-10 cpp-10-arm-linux-gnueabihf_10.3.0-8cross1 cpp-8_8.4.0-7 cpp-arm-linux-gnueabihf_4:10.2.1-1 cross-config_2.6.18+nmu2 crossbuild-essential-armhf_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.1 debian-archive-keyring_2021.1.1 debianutils_5.4-4 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 fdisk_2.37.2-2 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.3.0-10 g++-10-arm-linux-gnueabihf_10.3.0-8cross1 g++-arm-linux-gnueabihf_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.3.0-10 gcc-10-arm-linux-gnueabihf_10.3.0-8cross1 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libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_11.2.0-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-5 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncurses-dev_6.2+20210905-1 libncurses5-dev_6.2+20210905-1 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libquadmath0_11.2.0-5 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-2 libss2_1.46.4-1 libssh2-1_1.9.0-3 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-10 libstdc++-10-dev-armhf-cross_10.3.0-8cross1 libstdc++-9-dev_9.4.0-3 libstdc++6_11.2.0-5 libstdc++6-armhf-cross_11.2.0-2cross1 libsub-override-perl_0.09-2 libsystemd0_247.9-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-5 libubsan1_11.2.0-5 libubsan1-armhf-cross_11.2.0-2cross1 libuchardet0_0.0.7-1 libudev1_247.9-1 libunistring2_0.9.10-6 libuuid1_2.37.2-2 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-4 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.46-4 linux-libc-dev-armhf-cross_5.10.46-4cross4 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-2 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-5 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_2.96-7 tabix_1.13+ds-2 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.37.2-2 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: samtools Binary: samtools, samtools-test Architecture: any all Version: 1.13-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://www.htslib.org/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/samtools Vcs-Git: https://salsa.debian.org/med-team/samtools.git Testsuite: autopkgtest Testsuite-Triggers: tabix Build-Depends: debhelper-compat (= 13), bash-completion, libio-pty-perl , libncurses5-dev, libhts-dev (>= 1.13~), zlib1g-dev, automake, autoconf-archive, pkg-config, tabix (>= 1.0), liblzma-dev, libbz2-dev Package-List: samtools deb science optional arch=any samtools-test deb science optional arch=all Checksums-Sha1: 2bdca112372c85b9438213832c8531e7bf28c1fb 4550467 samtools_1.13.orig.tar.gz 83d77dce5c46721c7e15686aa06f5a57f910f46a 20600 samtools_1.13-2.debian.tar.xz Checksums-Sha256: 21621a2dd6f31b00c9184d31566e73a1c7fc0c1c2de62db125848fbdbc81448f 4550467 samtools_1.13.orig.tar.gz c032291accc4201d51dbffd3af6fba038522fc9102b6558de1700fcbd4920842 20600 samtools_1.13-2.debian.tar.xz Files: d6042c95145b32c044a3874ee6b0d026 4550467 samtools_1.13.orig.tar.gz 51058b7f72bb9ce3f16b510b17e280d2 20600 samtools_1.13-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmEs7L4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHLJw/+Nv1NNL6DTwotQg3fewjVn0nPCYldOX7w DDbpYEWVumNPiqm8T5mYXEu11VHpUm1anBBSM10qngQywJQCML+CwZRSDMjS4q+E muQL2CEMuoBtJmwVPcK/CsZR3e1+Qq0mBziwCFxLWzIpwD2vcY2bwMPdyB3RQBRL WTcuwOHr01QQ7/nb5s8xyC1KL8pO123WEW07ax13htVueqPTaGMLcqDqXntKOFFt FsLY+QDTFVrgvPPE6ZucLDgvPb2RhI4SN7hIzpQ3Z4dP/+Rxu+TP4OndrmcNfqnh CB7ZOnXpxDNT7b9un5dZ6iqkpBG94SQK7hLdCYmfdtBzXIdQXERAGk3rDoALfBMq qcN2onBb34jLTnHn1ZOp7pyODzlOyCRssa5nbTnV6ontOilXZ3zN15CjUS2SZGaM kFcT/5ZuB2RtgHcqox+pkG2lBdnQl4+EYd8b/pJqedLBVqTB0BC8AJpSl07Phwsd yMBHuMp84urpX5g9nmjRqCqMbYMHwSNknzSkmXI6cnuglY/HrBjWwNmWynGYAnMs oKIxYl7A2BNOP4EuVQT5LVuMyarQR1jfl/d9v9izOPTaNxqYR6Ed39kW/lW7uW9B 2CmITHsI3+2RIbLv867UbNApSd0V4zMI4htaT+W8ngAxdcNInE2BTYQNwrZaq0sO nk84NMEEdH0= =fmet -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Zl_UuaHq/trustedkeys.kbx': General error gpgv: Signature made Mon Aug 30 14:35:42 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./samtools_1.13-2.dsc dpkg-source: info: extracting samtools in /<> dpkg-source: info: unpacking samtools_1.13.orig.tar.gz dpkg-source: info: unpacking samtools_1.13-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-84e9b373-812d-436e-bc40-276e11f9262c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package samtools dpkg-buildpackage: info: source version 1.13-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from samtools-1.13/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis.*|README.md)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f config.mk touch config.mk dh_auto_clean -- install -d /<>/debian/.debhelper/generated/_source/home make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.new test/*.tmp test/*/*.new test/*/*.tmp test/*/*.tmp.* cd test/dat && rm -f test_input_*.bam.bai cd test/mpileup && rm -f FAIL-*.out* PASS-*.out* anomalous.[bc]*am indels.[bc]*am mpileup.*.[cs]*am mpileup.*.crai overlap50.[bc]*am expected/1.out xx#depth*.bam* rm -f *.o misc/*.o test/*.o test/*/*.o version.h ./lz4/lz4.o rm -f samtools libbam.a libst.a misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim test/merge/test_bam_translate test/merge/test_rtrans_build test/merge/test_trans_tbl_init test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args test/vcf-miniview rm -f config.cache config.h config.log config.mk config.status rm -f TAGS rm -rf autom4te.cache make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/samtools.substvars debian/samtools-test.substvars debian/files rm -fr -- debian/samtools/ debian/tmp/ debian/samtools-test/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:64: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:64: the top level find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' touch config.mk aclocal --force -I debian/ -I /usr/share/aclocal autoconf configure.ac:64: warning: _AC_CONFIG_SUBDIRS: you should use literals ./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from... m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from... configure.ac:64: the top level dh_auto_configure -- --with-htslib=system install -d /<>/debian/.debhelper/generated/_source/home ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf --with-htslib=system configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for gawk... no checking for mawk... mawk checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for htslib/sam.h... yes checking for hts_version in -lhts... yes checking for Curses library... yes checking for working curses.h... yes checking for X/Open Enhanced Curses conformance... no checking for Curses color functions... yes checking for obsolete Curses functions... yes checking for library containing cbreak... none required checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating config.h make[1]: Leaving directory '/<>' rm -f debian/samtools.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="\$(DFLAGS) \$(INCLUDES) $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" make -j1 "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=\$(DFLAGS) \$(INCLUDES) -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_index.o bam_index.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_plcmd.o bam_plcmd.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_view.o sam_view.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_fastq.o bam_fastq.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_cat.o bam_cat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_md.o bam_md.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_reheader.o bam_reheader.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_sort.o bam_sort.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdup.o bam_rmdup.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_rmdupse.o bam_rmdupse.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_mate.o bam_mate.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_stat.o bam_stat.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_color.o bam_color.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C echo '#define SAMTOOLS_VERSION "1.13"' > version.h echo '#define SAMTOOLS_CC "arm-linux-gnueabihf-gcc"' >> version.h echo '#define SAMTOOLS_CPPFLAGS "-frelease -Wdate-time -D_FORTIFY_SOURCE=2"' >> version.h echo '#define SAMTOOLS_CFLAGS "-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security"' >> version.h echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,-z,now"' >> version.h echo '#define SAMTOOLS_HTSDIR ""' >> version.h echo '#define SAMTOOLS_LIBS ""' >> version.h echo '#define SAMTOOLS_CURSES_LIB "-lcurses"' >> version.h sed -i -e 's@/<>@«BUILDPATH»@g' version.h arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamtk.o bamtk.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf.o bam2bcf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf_indel.o bam2bcf_indel.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample.o sample.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cut_target.o cut_target.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o phase.o phase.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2depth.o bam2depth.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o coverage.o coverage.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o padding.o padding.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bedcov.o bedcov.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bamshuf.o bamshuf.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dict.o dict.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats.o stats.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stats_isize.o stats_isize.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_flags.o bam_flags.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_split.o bam_split.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview.o bam_tview.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam_tview_curses.o bam_tview_curses.c cc1: warning: command-line option ‘-frelease’ is valid for D but not for C bam_tview_curses.c: In function ‘curses_mvprintw’: bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security] 88 | mvprintw(y,x,str); | ^~~~~~~~ cc1: some warnings being treated as errors make[2]: *** [Makefile:142: bam_tview_curses.o] Error 1 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=\$(DFLAGS) \$(INCLUDES) -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" returned exit code 2 make[1]: *** [debian/rules:26: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:12: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-09-11T21:50:16Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 20224 Build-Time: 26 Distribution: unstable Fail-Stage: build Foreign Architectures: armhf Host Architecture: armhf Install-Time: 38 Job: samtools_1.13-2 Machine Architecture: amd64 Package: samtools Package-Time: 78 Source-Version: 1.13-2 Space: 20224 Status: attempted Version: 1.13-2 -------------------------------------------------------------------------------- Finished at 2021-09-11T21:50:16Z Build needed 00:01:18, 20224k disk space